AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120760 MtrunA17_Chr1g0179461 97.275 367 8 2 1 366 1 366 0.0 718
Msa0120760 MtrunA17_Chr7g0245841 43.465 329 146 10 47 365 35 333 4.90e-59 194
Msa0120760 MtrunA17_Chr8g0349091 50.235 213 95 3 69 281 89 290 1.45e-51 175
Msa0120760 MtrunA17_Chr8g0351761 41.615 322 137 10 64 365 66 356 1.47e-48 167
Msa0120760 MtrunA17_Chr1g0188211 40.836 311 142 11 69 356 49 340 9.94e-47 162
Msa0120760 MtrunA17_Chr4g0056761 48.485 231 108 6 58 284 61 284 2.53e-46 160
Msa0120760 MtrunA17_Chr5g0397551 45.631 206 98 3 69 274 70 261 2.68e-46 160
Msa0120760 MtrunA17_Chr4g0054661 41.379 261 126 7 61 308 65 311 3.72e-46 160
Msa0120760 MtrunA17_Chr7g0247431 43.299 194 101 2 69 262 89 273 2.93e-43 153
Msa0120760 MtrunA17_Chr8g0386741 43.478 230 112 5 69 289 97 317 1.86e-42 151
Msa0120760 MtrunA17_Chr5g0398621 40.889 225 103 5 68 288 45 243 4.90e-41 144
Msa0120760 MtrunA17_Chr6g0476061 40.613 261 121 8 69 314 51 292 8.93e-37 135
Msa0120760 MtrunA17_Chr1g0190011 39.151 212 112 5 53 261 25 222 2.06e-31 121
Msa0120760 MtrunA17_Chr4g0027371 45.399 163 77 5 134 293 8 161 2.29e-30 116
Msa0120760 MtrunA17_Chr4g0027351 54.237 118 50 3 140 256 14 128 1.18e-27 105
Msa0120760 MtrunA17_Chr7g0274821 41.176 204 89 5 69 262 74 256 1.59e-27 111
Msa0120760 MtrunA17_Chr1g0165101 35.075 268 127 8 16 267 48 284 6.19e-27 109
Msa0120760 MtrunA17_Chr4g0027331 52.101 119 53 3 140 255 14 131 3.74e-26 102
Msa0120760 MtrunA17_Chr3g0133051 34.109 129 85 0 145 273 101 229 1.82e-20 90.5
Msa0120760 MtrunA17_Chr5g0427311 34.109 129 82 2 146 273 81 207 1.48e-19 86.7
Msa0120760 MtrunA17_Chr6g0476241 36.735 196 95 9 69 262 120 288 5.97e-19 86.3
Msa0120760 MtrunA17_Chr4g0027301 40.800 125 70 3 135 256 16 139 1.76e-18 81.3
Msa0120760 MtrunA17_Chr5g0417581 41.985 131 59 4 146 261 20 148 2.14e-18 82.4
Msa0120760 MtrunA17_Chr3g0086021 38.211 123 69 2 157 276 118 236 2.62e-18 84.3
Msa0120760 MtrunA17_Chr3g0112131 40.800 125 70 2 148 272 109 229 1.11e-17 82.8
Msa0120760 MtrunA17_Chr5g0398531 41.600 125 69 2 148 272 130 250 5.25e-16 78.2
Msa0120760 MtrunA17_Chr5g0443311 37.500 184 99 5 90 272 33 201 1.03e-15 76.3
Msa0120760 MtrunA17_Chr4g0054651 39.259 135 78 2 148 282 106 236 1.60e-15 76.3
Msa0120760 MtrunA17_Chr1g0168121 39.516 124 71 2 148 271 72 191 3.24e-15 75.1
Msa0120760 MtrunA17_Chr8g0351651 41.600 125 69 2 148 272 116 236 5.10e-15 75.1
Msa0120760 MtrunA17_Chr7g0250031 41.935 124 68 2 148 271 87 206 1.45e-14 73.2
Msa0120760 MtrunA17_Chr1g0190051 44.348 115 58 3 148 261 104 213 8.30e-13 68.6
Msa0120760 MtrunA17_Chr5g0435681 38.261 115 67 2 149 263 120 230 6.18e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120760 AT4G12080.1 48.548 241 110 4 69 304 89 320 1.82e-63 206
Msa0120760 AT4G25320.1 46.058 241 107 6 69 296 86 316 5.91e-55 186
Msa0120760 AT2G45850.1 46.009 213 102 3 69 281 98 297 6.81e-54 181
Msa0120760 AT2G45850.2 46.009 213 102 3 69 281 98 297 6.81e-54 181
Msa0120760 AT5G62260.1 45.413 218 102 4 69 274 76 288 2.89e-53 181
Msa0120760 AT5G62260.3 45.413 218 102 4 69 274 76 288 2.89e-53 181
Msa0120760 AT2G33620.1 48.804 209 72 6 69 265 97 282 3.10e-50 172
Msa0120760 AT2G33620.4 48.804 209 72 6 69 265 97 282 3.10e-50 172
Msa0120760 AT2G33620.2 48.804 209 72 6 69 265 97 282 3.10e-50 172
Msa0120760 AT2G33620.3 48.804 209 72 6 69 265 97 282 3.10e-50 172
Msa0120760 AT5G62260.2 46.500 200 90 4 69 256 76 270 4.02e-50 170
Msa0120760 AT4G22770.2 48.444 225 98 7 69 284 72 287 2.75e-49 169
Msa0120760 AT4G22770.1 48.444 225 98 7 69 284 72 287 2.75e-49 169
Msa0120760 AT4G00200.2 47.619 252 94 5 43 283 36 260 3.84e-49 168
Msa0120760 AT4G00200.1 47.619 252 94 5 43 283 36 260 3.84e-49 168
Msa0120760 AT2G45850.3 47.872 188 85 3 69 256 98 272 8.59e-49 166
Msa0120760 AT1G63470.1 46.667 195 96 4 69 262 105 292 8.63e-46 161
Msa0120760 AT5G51590.1 44.978 229 81 6 69 263 78 295 1.27e-45 161
Msa0120760 AT3G61310.1 45.238 210 101 3 69 278 101 296 5.30e-44 155
Msa0120760 AT1G63480.2 41.121 214 103 5 69 276 99 295 5.15e-43 153
Msa0120760 AT1G63480.1 41.121 214 103 5 69 276 99 295 5.15e-43 153
Msa0120760 AT1G63480.5 41.121 214 103 5 69 276 93 289 5.49e-43 153
Msa0120760 AT1G63480.7 41.121 214 103 5 69 276 93 289 5.49e-43 153
Msa0120760 AT1G63480.4 41.121 214 103 5 69 276 93 289 5.49e-43 153
Msa0120760 AT1G63480.3 41.121 214 103 5 69 276 93 289 5.49e-43 153
Msa0120760 AT1G63480.6 41.121 214 103 5 69 276 93 289 5.49e-43 153
Msa0120760 AT4G17950.1 39.916 238 115 5 69 286 131 360 5.99e-40 147
Msa0120760 AT5G46640.1 40.639 219 95 6 69 269 102 303 1.86e-34 131
Msa0120760 AT3G04590.1 42.714 199 88 5 69 261 105 283 2.66e-34 129
Msa0120760 AT3G04590.2 42.714 199 88 5 69 261 105 283 2.19e-33 128
Msa0120760 AT2G36560.1 35.577 208 114 7 144 347 104 295 1.94e-26 110
Msa0120760 AT3G60870.1 41.026 117 63 2 145 261 86 196 2.95e-20 89.7
Msa0120760 AT2G45430.1 41.727 139 75 2 148 283 119 254 3.92e-18 84.7
Msa0120760 AT1G14490.2 34.559 136 86 2 145 277 49 184 1.80e-17 80.9
Msa0120760 AT1G14490.1 34.815 135 85 2 146 277 31 165 2.75e-17 80.1
Msa0120760 AT4G12050.1 40.000 125 72 1 148 272 148 269 5.99e-17 81.3
Msa0120760 AT5G49700.1 36.585 123 69 3 145 261 83 202 9.44e-17 80.1
Msa0120760 AT2G42940.1 43.966 116 59 3 148 262 83 193 9.32e-16 76.6
Msa0120760 AT1G76500.1 36.066 122 67 2 148 261 102 220 3.72e-15 75.9
Msa0120760 AT4G22810.1 39.370 127 72 2 148 272 135 258 4.48e-15 75.9
Msa0120760 AT5G28590.1 40.678 118 43 3 145 261 30 121 2.55e-14 72.0
Msa0120760 AT2G35270.1 37.594 133 79 2 148 280 108 236 3.63e-13 69.7
Msa0120760 AT3G55560.1 38.793 116 68 2 148 263 118 230 4.84e-13 69.7
Msa0120760 AT4G35390.1 38.261 115 67 2 148 261 93 204 8.54e-13 68.6
Msa0120760 AT4G17800.1 38.889 126 73 2 148 273 112 233 1.56e-12 67.8
Msa0120760 AT3G04570.1 39.695 131 69 2 148 271 110 237 3.22e-12 67.0
Msa0120760 AT4G14465.1 35.433 127 78 2 148 274 97 219 2.44e-11 64.3

Find 101 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCAAGCTTTCCATTTC+TGG 0.001701 1_3:-45916912 Msa0120760:five_prime_UTR
CGTGCTGCTGTGACTATTTC+TGG 0.182840 1_3:+45913449 None:intergenic
TCTTCTTGTAACTTGGATTT+AGG 0.193712 1_3:+45916587 None:intergenic
CGCCATTTGAATACTCTTCT+TGG 0.220102 1_3:-45916974 Msa0120760:five_prime_UTR
CAGAAATTAGAATATTATTA+TGG 0.279807 1_3:-45912647 Msa0120760:three_prime_UTR
GGTCCTGACGGTCGAGTAAT+TGG 0.293984 1_3:-45914543 Msa0120760:CDS
AACAACAACACCAGGAAGTT+TGG 0.299197 1_3:-45916665 Msa0120760:CDS
TGCTTCAATTCTTCTCTTAG+TGG 0.311696 1_3:-45916997 Msa0120760:five_prime_UTR
AACAGTATTGTAACTACTAT+TGG 0.316379 1_3:-45916727 Msa0120760:CDS
TTCTTTGCCTGATGAATAGA+TGG 0.316756 1_3:-45913231 Msa0120760:exon
ACAACAACAAGCCTCTTAAA+AGG 0.320963 1_3:-45913517 Msa0120760:CDS
TGAATATTTGCTTGTGAGAT+AGG 0.357972 1_3:+45913425 None:intergenic
AAGAAAATATCATACTTGTA+TGG 0.364052 1_3:+45914485 None:intergenic
GCCTGATGAATAGATGGTTT+TGG 0.366145 1_3:-45913225 Msa0120760:intron
CCAGGAAGTTTGGATTTGTT+TGG 0.373812 1_3:-45916655 Msa0120760:CDS
CCAAACAAATCCAAACTTCC+TGG 0.377742 1_3:+45916655 None:intergenic
TTTGAGATTCTATCTTTGTC+TGG 0.383251 1_3:-45914633 Msa0120760:CDS
AAGGGTCGTGGTAAATCAAC+CGG 0.384847 1_3:-45916490 Msa0120760:CDS
GGAAGCTGATGAGACATAAT+AGG 0.397317 1_3:+45913383 None:intergenic
ATCTCACAAGCAAATATTCA+TGG 0.403263 1_3:-45913422 Msa0120760:CDS
GGCAAAGAAATATTGATGTC+AGG 0.404726 1_3:+45913245 None:intergenic
AAACATTGATAGATTCTCTC+TGG 0.408364 1_3:+45913351 None:intergenic
AAACTTCCTGGTGTTGTTGT+TGG 0.414109 1_3:+45916667 None:intergenic
CTAGGTCAACCTGGTTCTAC+TGG 0.416830 1_3:-45915654 Msa0120760:CDS
GCTGGTGTTCTTATAGCTGC+TGG 0.429689 1_3:-45914510 Msa0120760:CDS
GTAATTGGAGGTGCTGTTGC+TGG 0.430460 1_3:-45914528 Msa0120760:CDS
TTAACAATCTTCTTGTAACT+TGG 0.437261 1_3:+45916580 None:intergenic
CCACTCCTGATGATGATACT+TGG 0.440882 1_3:-45913304 Msa0120760:CDS
AGAAAATATCATACTTGTAT+GGG 0.443003 1_3:+45914486 None:intergenic
GATTCTCTCTGGATTTGATC+AGG 0.443447 1_3:+45913362 None:intergenic
TCTTTATATATTGTTTCTCA+TGG 0.446469 1_3:-45916854 Msa0120760:exon
CACCAAAAGAAGAAAAGGTT+TGG 0.447442 1_3:+45916455 None:intergenic
ACCAAAACCATCTATTCATC+AGG 0.449295 1_3:+45913224 None:intergenic
AACCAAGAAGAGTATTCAAA+TGG 0.450734 1_3:+45916972 None:intergenic
AACTTTAGAGATTGCTCCAT+TGG 0.453949 1_3:+45915680 None:intergenic
GTGGCTTCTCCAACTTCAAC+TGG 0.454329 1_3:-45913473 Msa0120760:CDS
GAAAGAATGCATATTCCTCT+TGG 0.455886 1_3:+45915705 None:intergenic
CGGAATTTGTGATGGCAACT+AGG 0.458037 1_3:-45912694 Msa0120760:three_prime_UTR
AAACTCACCAAAAGAAGAAA+AGG 0.466047 1_3:+45916450 None:intergenic
AAGAATTGAAGCAGTAGTAC+TGG 0.466129 1_3:+45917007 None:intergenic
GGATTGAGTGTCTCACTAGC+TGG 0.467914 1_3:-45914564 Msa0120760:CDS
CTTTCCATTTCTGGAAACAA+AGG 0.471831 1_3:-45916903 Msa0120760:five_prime_UTR
AAATCCACAGCAGCTGTGCT+TGG 0.476159 1_3:+45915939 None:intergenic
CTGTTCCAAGTATCATCATC+AGG 0.478067 1_3:+45913299 None:intergenic
TCTTGGTTTCAGATTGTAGT+GGG 0.483076 1_3:-45913560 Msa0120760:intron
AACATTGCTGTTGTTGTGCA+TGG 0.483243 1_3:+45916825 None:intergenic
TTTGTCACTTTGTAGGATGT+TGG 0.483338 1_3:-45915759 Msa0120760:intron
ATTTCTGGACCAGTTGAAGT+TGG 0.494397 1_3:+45913464 None:intergenic
GTTGTTGTTGGTGTGACTGT+TGG 0.501545 1_3:+45916679 None:intergenic
CAGTAGTACTGGTAGGGAAG+AGG 0.501800 1_3:+45917018 None:intergenic
AACAACAGCAATGTTTCAGT+TGG 0.502217 1_3:-45916817 Msa0120760:CDS
ATATGCATTCTTTCTGCCAA+TGG 0.504376 1_3:-45915696 Msa0120760:CDS
GTGGGGAGCTTCGTGTCAAA+TGG 0.505548 1_3:-45913542 Msa0120760:CDS
ATGTTCATGTTCATTTCTTG+AGG 0.510057 1_3:+45916760 None:intergenic
GTCACACCAACAACAACACC+AGG 0.516153 1_3:-45916673 Msa0120760:CDS
GTTTCCAAGCACAGCTGCTG+TGG 0.518458 1_3:-45915943 Msa0120760:CDS
GCAAAGAAATATTGATGTCA+GGG 0.519620 1_3:+45913246 None:intergenic
ATCTTTGTCTGGATCTTACA+CGG 0.521033 1_3:-45914622 Msa0120760:CDS
CCTCCAATTACTCGACCGTC+AGG 0.528246 1_3:+45914540 None:intergenic
CCTGGTGGTGATGTTAGTAT+TGG 0.530826 1_3:+45916547 None:intergenic
ACAACAGCAATGTTTCAGTT+GGG 0.533238 1_3:-45916816 Msa0120760:CDS
GGTGATGTTAGTATTGGTGT+TGG 0.537464 1_3:+45916553 None:intergenic
ATGAACATGAACATAAGTGT+TGG 0.538632 1_3:-45916751 Msa0120760:CDS
CCAAGAAAATATGACGCTGA+TGG 0.541079 1_3:-45916613 Msa0120760:CDS
TACACGGCTTCTGACAATAG+TGG 0.542066 1_3:-45914606 Msa0120760:CDS
TGAAATGAGAGAAAAGTGAA+AGG 0.550103 1_3:+45916928 None:intergenic
GTCACTTTGTAGGATGTTGG+TGG 0.552302 1_3:-45915756 Msa0120760:intron
TTTGTAGACAAAGTGAATCC+TGG 0.553687 1_3:+45916529 None:intergenic
ATTGAAGCAGTAGTACTGGT+AGG 0.553919 1_3:+45917011 None:intergenic
CATGTAATCACAGTTTATGC+AGG 0.557312 1_3:-45915909 Msa0120760:CDS
TTGAAGCAGTAGTACTGGTA+GGG 0.558052 1_3:+45917012 None:intergenic
CTGATGAATATTCAGATCAA+AGG 0.560465 1_3:-45913274 Msa0120760:CDS
GTCTCACTAGCTGGTCCTGA+CGG 0.568347 1_3:-45914555 Msa0120760:CDS
CCTGACGGTCGAGTAATTGG+AGG 0.569335 1_3:-45914540 Msa0120760:CDS
TTTGTTGTTGCTAGTTCTTG+TGG 0.587630 1_3:+45916790 None:intergenic
GGCATAAGAACTCGAGAGGG+TGG 0.588092 1_3:-45914585 Msa0120760:CDS
TTCTTGGTTTCAGATTGTAG+TGG 0.588884 1_3:-45913561 Msa0120760:intron
GAAAATATCATACTTGTATG+GGG 0.602829 1_3:+45914487 None:intergenic
AGGTAATGGAGAGGCTGACA+TGG 0.609701 1_3:-45912737 Msa0120760:three_prime_UTR
CTTGGTTTCAGATTGTAGTG+GGG 0.614189 1_3:-45913559 Msa0120760:intron
AAAGTTGCACTAGGTCAACC+TGG 0.616623 1_3:-45915663 Msa0120760:CDS
TGGAGAGGCTGACATGGTAA+CGG 0.618201 1_3:-45912731 Msa0120760:three_prime_UTR
ACTAACAGCGGAATTTGTGA+TGG 0.629061 1_3:-45912702 Msa0120760:three_prime_UTR
AATCACAGTTTATGCAGGAG+AGG 0.637801 1_3:-45915904 Msa0120760:intron
CCAAGTATCATCATCAGGAG+TGG 0.638537 1_3:+45913304 None:intergenic
GCAATCTCTAAAGTTGCACT+AGG 0.638595 1_3:-45915672 Msa0120760:CDS
GGTTTGGTAATTAACAAACC+CGG 0.641927 1_3:+45916471 None:intergenic
TAGTGGCATAAGAACTCGAG+AGG 0.642518 1_3:-45914589 Msa0120760:CDS
CAAAGAAATATTGATGTCAG+GGG 0.647438 1_3:+45913247 None:intergenic
CCAATACTAACATCACCACC+AGG 0.647483 1_3:-45916547 Msa0120760:CDS
TCTGATTTCAGGTAATGGAG+AGG 0.652237 1_3:-45912746 Msa0120760:intron
AAGCCACTGTTTGTTCACGT+TGG 0.653220 1_3:+45913489 None:intergenic
ATGCTACCACCAGTAGAACC+AGG 0.659895 1_3:+45915645 None:intergenic
TTTGCACAGAAGAGTCCAAG+AGG 0.677413 1_3:-45915720 Msa0120760:CDS
GGTCAACCTGGTTCTACTGG+TGG 0.677585 1_3:-45915651 Msa0120760:CDS
AGGGTCGTGGTAAATCAACC+GGG 0.682669 1_3:-45916489 Msa0120760:CDS
GCATAAACTGTGATTACATG+TGG 0.695853 1_3:+45915912 None:intergenic
AGTGGCATAAGAACTCGAGA+GGG 0.696985 1_3:-45914588 Msa0120760:CDS
GTACCAACGTGAACAAACAG+TGG 0.714692 1_3:-45913492 Msa0120760:CDS
TAACGGAATGAAACTAACAG+CGG 0.790419 1_3:-45912714 Msa0120760:three_prime_UTR
GTAGACAAAGTGAATCCTGG+TGG 0.798474 1_3:+45916532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTATTCATAACAA+TGG - chr1_3:45915261-45915280 Msa0120760:intron 10.0%
!! AAATAATTATTCATAACAAT+GGG - chr1_3:45915262-45915281 Msa0120760:intron 10.0%
!!! CAAATCTTTTTTTTTTTTTT+GGG + chr1_3:45915363-45915382 None:intergenic 10.0%
!!! TCAAATCTTTTTTTTTTTTT+TGG + chr1_3:45915364-45915383 None:intergenic 10.0%
!!! AATATTATATATGCTTTATT+TGG + chr1_3:45916062-45916081 None:intergenic 10.0%
!!! TTTTTTCTTTTTCATCTTTT+TGG - chr1_3:45913420-45913439 Msa0120760:CDS 15.0%
!!! ATAACTAGTTTACATTATTA+GGG + chr1_3:45913515-45913534 None:intergenic 15.0%
!!! GATTTATTTTTTACTTGTAA+TGG - chr1_3:45913554-45913573 Msa0120760:intron 15.0%
!! GTTTGTGAAATAATTAATTT+GGG - chr1_3:45913674-45913693 Msa0120760:intron 15.0%
!! TTATATATTTATTTCAGCTT+TGG + chr1_3:45916109-45916128 None:intergenic 15.0%
!! CAGAAATTAGAATATTATTA+TGG - chr1_3:45917065-45917084 Msa0120760:five_prime_UTR 15.0%
!!! TCTTTATATATTGTTTCTCA+TGG - chr1_3:45912858-45912877 Msa0120760:intron 20.0%
!! AAAAAGAAGAAGAAAAACAT+GGG + chr1_3:45913327-45913346 None:intergenic 20.0%
!!! TTTTCATCTTTTTGGTTTAT+AGG - chr1_3:45913428-45913447 Msa0120760:CDS 20.0%
!!! TTTCATCTTTTTGGTTTATA+GGG - chr1_3:45913429-45913448 Msa0120760:CDS 20.0%
!!! CATAACTAGTTTACATTATT+AGG + chr1_3:45913516-45913535 None:intergenic 20.0%
!! CGTTTGTGAAATAATTAATT+TGG - chr1_3:45913673-45913692 Msa0120760:intron 20.0%
!!! ATATTATTTTGTCACTTTGT+AGG - chr1_3:45913946-45913965 Msa0120760:intron 20.0%
!!! ATATTTTTCCCTTTAATTGT+TGG - chr1_3:45914138-45914157 Msa0120760:intron 20.0%
!! AAATTGAACCAACAATTAAA+GGG + chr1_3:45914149-45914168 None:intergenic 20.0%
!! AAAATTGAACCAACAATTAA+AGG + chr1_3:45914150-45914169 None:intergenic 20.0%
!!! AACATTTTTAGCTAACAAAT+AGG + chr1_3:45914329-45914348 None:intergenic 20.0%
!!! ACATTTTGCAATTTTATACT+AGG + chr1_3:45914468-45914487 None:intergenic 20.0%
!! TAATAACAAATTCTGACAAA+GGG + chr1_3:45914504-45914523 None:intergenic 20.0%
!! AGAAAATATCATACTTGTAT+GGG + chr1_3:45915229-45915248 None:intergenic 20.0%
!! AAGAAAATATCATACTTGTA+TGG + chr1_3:45915230-45915249 None:intergenic 20.0%
!! ACCAACTGATAAATATAAAA+TGG + chr1_3:45915746-45915765 None:intergenic 20.0%
!! AAAATTGGATATAAAGTGAT+TGG + chr1_3:45915785-45915804 None:intergenic 20.0%
!! GCATATATAATATTTGATTG+AGG - chr1_3:45916068-45916087 Msa0120760:intron 20.0%
!!! TGTTTTTTAATTCTGATTTC+AGG - chr1_3:45916955-45916974 Msa0120760:five_prime_UTR 20.0%
! AACAGTATTGTAACTACTAT+TGG - chr1_3:45912985-45913004 Msa0120760:intron 25.0%
! TTAACAATCTTCTTGTAACT+TGG + chr1_3:45913135-45913154 None:intergenic 25.0%
! GAAAAAGAAGAAGAAAAACA+TGG + chr1_3:45913328-45913347 None:intergenic 25.0%
!! CTTCTTCTTTTTCTTTACAA+TGG - chr1_3:45913335-45913354 Msa0120760:CDS 25.0%
! TTGTACTCAAAATGTTTGAT+GGG - chr1_3:45913376-45913395 Msa0120760:CDS 25.0%
!!! TTTTTGGTTTATAGGGTTTT+GGG - chr1_3:45913436-45913455 Msa0120760:CDS 25.0%
!!! AATGGCTAAATTTTTCAGTT+AGG - chr1_3:45913572-45913591 Msa0120760:intron 25.0%
!!! ATGGCTAAATTTTTCAGTTA+GGG - chr1_3:45913573-45913592 Msa0120760:intron 25.0%
!! TTTTGTGTCTGTAATTTTGA+AGG - chr1_3:45913740-45913759 Msa0120760:intron 25.0%
!!! TGAAGTTTTAACAGATCTAT+AGG - chr1_3:45913902-45913921 Msa0120760:intron 25.0%
! TTTAACAGATCTATAGGATT+TGG - chr1_3:45913908-45913927 Msa0120760:intron 25.0%
! CTAGAAAATAATAGTGTTCA+AGG + chr1_3:45914185-45914204 None:intergenic 25.0%
! TATGTTTGTCTCTATTTGAA+GGG - chr1_3:45914286-45914305 Msa0120760:intron 25.0%
! TGAGAACTAATTCTACTAAA+TGG - chr1_3:45914378-45914397 Msa0120760:intron 25.0%
! GAGAACTAATTCTACTAAAT+GGG - chr1_3:45914379-45914398 Msa0120760:intron 25.0%
! CTAATAACAAATTCTGACAA+AGG + chr1_3:45914505-45914524 None:intergenic 25.0%
!! AAATTGCAGGACTAATATTT+TGG + chr1_3:45914557-45914576 None:intergenic 25.0%
! TCAAGTATTACAACACTAAA+AGG - chr1_3:45914738-45914757 Msa0120760:intron 25.0%
!!! ATTTAGTGCATATTGATTTG+TGG - chr1_3:45914829-45914848 Msa0120760:intron 25.0%
!!! TTGATTTGTGGATCATTTAT+TGG - chr1_3:45914841-45914860 Msa0120760:intron 25.0%
! GAAAATATCATACTTGTATG+GGG + chr1_3:45915228-45915247 None:intergenic 25.0%
!! ATTATTCATAACAATGGGTT+TGG - chr1_3:45915267-45915286 Msa0120760:intron 25.0%
!! GGTATGAGATGAAAATTTTA+TGG - chr1_3:45915288-45915307 Msa0120760:intron 25.0%
!! TGCATAATATGTAGAGTATT+TGG - chr1_3:45915477-45915496 Msa0120760:intron 25.0%
!! GCATAATATGTAGAGTATTT+GGG - chr1_3:45915478-45915497 Msa0120760:intron 25.0%
! TGATTTCATTCATAACACTA+TGG - chr1_3:45915504-45915523 Msa0120760:intron 25.0%
!!! GCCATTTTATATTTATCAGT+TGG - chr1_3:45915742-45915761 Msa0120760:CDS 25.0%
! TACTGAATAAGCTAGAAAAT+TGG + chr1_3:45915800-45915819 None:intergenic 25.0%
! TAATCTTCTTAACACATTCT+TGG - chr1_3:45916135-45916154 Msa0120760:intron 25.0%
!! TTAATTCTGATTTCAGGTAA+TGG - chr1_3:45916961-45916980 Msa0120760:five_prime_UTR 25.0%
!! AACCAAGAAGAGTATTCAAA+TGG + chr1_3:45912743-45912762 None:intergenic 30.0%
TGAAATGAGAGAAAAGTGAA+AGG + chr1_3:45912787-45912806 None:intergenic 30.0%
!! TTTTCCTTTGTTTCCAGAAA+TGG + chr1_3:45912816-45912835 None:intergenic 30.0%
ATGTTCATGTTCATTTCTTG+AGG + chr1_3:45912955-45912974 None:intergenic 30.0%
ATGAACATGAACATAAGTGT+TGG - chr1_3:45912961-45912980 Msa0120760:intron 30.0%
TTGTTTGGTAAGAAAAAGAG+AGG - chr1_3:45913072-45913091 Msa0120760:intron 30.0%
TCTTCTTGTAACTTGGATTT+AGG + chr1_3:45913128-45913147 None:intergenic 30.0%
! AAATGAGTTTTCCTCCAAAA+AGG - chr1_3:45913203-45913222 Msa0120760:intron 30.0%
! AATGAGTTTTCCTCCAAAAA+GGG - chr1_3:45913204-45913223 Msa0120760:intron 30.0%
! TACCAAACCTTTTCTTCTTT+TGG - chr1_3:45913255-45913274 Msa0120760:CDS 30.0%
AAACTCACCAAAAGAAGAAA+AGG + chr1_3:45913265-45913284 None:intergenic 30.0%
CTTGTACTCAAAATGTTTGA+TGG - chr1_3:45913375-45913394 Msa0120760:CDS 30.0%
!!! CTTTTTGGTTTATAGGGTTT+TGG - chr1_3:45913435-45913454 Msa0120760:CDS 30.0%
!! AATTTTTCAGTTAGGGTTCA+AGG - chr1_3:45913580-45913599 Msa0120760:intron 30.0%
CTAAGAATAGAGTATGGATA+TGG - chr1_3:45914222-45914241 Msa0120760:intron 30.0%
TACCTACTGTTGACATATAT+GGG + chr1_3:45914248-45914267 None:intergenic 30.0%
CTATGTTTGTCTCTATTTGA+AGG - chr1_3:45914285-45914304 Msa0120760:intron 30.0%
ATATTAGTCCTGCAATTTCA+AGG - chr1_3:45914559-45914578 Msa0120760:CDS 30.0%
AAATTGTTCCTTGAAATTGC+AGG + chr1_3:45914570-45914589 None:intergenic 30.0%
TGCAATTTCAAGGAACAATT+TGG - chr1_3:45914569-45914588 Msa0120760:CDS 30.0%
GCAATTTCAAGGAACAATTT+GGG - chr1_3:45914570-45914589 Msa0120760:CDS 30.0%
AATTGTTCCTTGAAATTGCA+GGG + chr1_3:45914569-45914588 None:intergenic 30.0%
AAATTGTTCCTTGAAATTGC+AGG + chr1_3:45914570-45914589 None:intergenic 30.0%
TGCAATTTCAAGGAACAATT+TGG - chr1_3:45914569-45914588 Msa0120760:CDS 30.0%
AATTCCAAAAAGCAATGCAA+TGG - chr1_3:45914670-45914689 Msa0120760:intron 30.0%
TATTGGATGCACTATTTATC+TGG - chr1_3:45914858-45914877 Msa0120760:intron 30.0%
! TCAATGTCATGCATCATTTT+CGG - chr1_3:45914939-45914958 Msa0120760:intron 30.0%
TCAATGTCTCATTTACTTTC+AGG - chr1_3:45915051-45915070 Msa0120760:intron 30.0%
CAATGTCTCATTTACTTTCA+GGG - chr1_3:45915052-45915071 Msa0120760:intron 30.0%
! TTTGAGATTCTATCTTTGTC+TGG - chr1_3:45915079-45915098 Msa0120760:intron 30.0%
TGAATATTTGCTTGTGAGAT+AGG + chr1_3:45916290-45916309 None:intergenic 30.0%
ATCTCACAAGCAAATATTCA+TGG - chr1_3:45916290-45916309 Msa0120760:intron 30.0%
AAACATTGATAGATTCTCTC+TGG + chr1_3:45916364-45916383 None:intergenic 30.0%
CTGATGAATATTCAGATCAA+AGG - chr1_3:45916438-45916457 Msa0120760:intron 30.0%
CAAAGAAATATTGATGTCAG+GGG + chr1_3:45916468-45916487 None:intergenic 30.0%
GCAAAGAAATATTGATGTCA+GGG + chr1_3:45916469-45916488 None:intergenic 30.0%
GTTTCATGTCACTAATATGA+CGG - chr1_3:45916534-45916553 Msa0120760:CDS 30.0%
TACTATAAGCTTCTACCTAA+AGG + chr1_3:45916619-45916638 None:intergenic 30.0%
TATAGTATTACTCGTCTTCA+CGG - chr1_3:45916632-45916651 Msa0120760:CDS 30.0%
AAACAGTTACAATAAGACGA+CGG + chr1_3:45916940-45916959 None:intergenic 30.0%
AAGAATTGAAGCAGTAGTAC+TGG + chr1_3:45912708-45912727 None:intergenic 35.0%
TGCTTCAATTCTTCTCTTAG+TGG - chr1_3:45912715-45912734 Msa0120760:three_prime_UTR 35.0%
CATTTCAAGCTTTCCATTTC+TGG - chr1_3:45912800-45912819 Msa0120760:intron 35.0%
! CTTTCCATTTCTGGAAACAA+AGG - chr1_3:45912809-45912828 Msa0120760:intron 35.0%
AACAACAGCAATGTTTCAGT+TGG - chr1_3:45912895-45912914 Msa0120760:intron 35.0%
ACAACAGCAATGTTTCAGTT+GGG - chr1_3:45912896-45912915 Msa0120760:intron 35.0%
!! TTTGTTGTTGCTAGTTCTTG+TGG + chr1_3:45912925-45912944 None:intergenic 35.0%
TTTGTAGACAAAGTGAATCC+TGG + chr1_3:45913186-45913205 None:intergenic 35.0%
! GGTTTGGTAATTAACAAACC+CGG + chr1_3:45913244-45913263 None:intergenic 35.0%
CACCAAAAGAAGAAAAGGTT+TGG + chr1_3:45913260-45913279 None:intergenic 35.0%
GAAGAAGAAAAACATGGGTA+AGG + chr1_3:45913322-45913341 None:intergenic 35.0%
!! TGTCTGTAATTTTGAAGGTG+AGG - chr1_3:45913745-45913764 Msa0120760:intron 35.0%
GCATAAACTGTGATTACATG+TGG + chr1_3:45913803-45913822 None:intergenic 35.0%
CATGTAATCACAGTTTATGC+AGG - chr1_3:45913803-45913822 Msa0120760:intron 35.0%
!! TTTGTCACTTTGTAGGATGT+TGG - chr1_3:45913953-45913972 Msa0120760:intron 35.0%
GAAAGAATGCATATTCCTCT+TGG + chr1_3:45914010-45914029 None:intergenic 35.0%
ATATGCATTCTTTCTGCCAA+TGG - chr1_3:45914016-45914035 Msa0120760:intron 35.0%
! AACTTTAGAGATTGCTCCAT+TGG + chr1_3:45914035-45914054 None:intergenic 35.0%
!!! TGGTAGCATTTTGACTTATG+AGG - chr1_3:45914081-45914100 Msa0120760:intron 35.0%
CTTCTGCTAAGAATAGAGTA+TGG - chr1_3:45914216-45914235 Msa0120760:intron 35.0%
GTACCTACTGTTGACATATA+TGG + chr1_3:45914249-45914268 None:intergenic 35.0%
TTTGTCTCTATTTGAAGGGT+TGG - chr1_3:45914290-45914309 Msa0120760:intron 35.0%
ATAATAGCCCTGCAATTTCA+AGG - chr1_3:45914619-45914638 Msa0120760:CDS 35.0%
!! CTTACCATTGCATTGCTTTT+TGG + chr1_3:45914677-45914696 None:intergenic 35.0%
CAAAAAGCAATGCAATGGTA+AGG - chr1_3:45914675-45914694 Msa0120760:intron 35.0%
! AAGTAAAGCTTTTCGTCTCT+TGG - chr1_3:45914775-45914794 Msa0120760:intron 35.0%
ATCTTTGTCTGGATCTTACA+CGG - chr1_3:45915090-45915109 Msa0120760:intron 35.0%
ATGATCGAAGTACAACTGTT+TGG - chr1_3:45915572-45915591 Msa0120760:intron 35.0%
GAAGTACAACTGTTTGGTAA+TGG - chr1_3:45915578-45915597 Msa0120760:intron 35.0%
TTACTTATCCATCATCCTCA+TGG - chr1_3:45915865-45915884 Msa0120760:intron 35.0%
TACTTATCCATCATCCTCAT+GGG - chr1_3:45915866-45915885 Msa0120760:intron 35.0%
!!! AGGGATATTTTTTGACTCGT+GGG + chr1_3:45915919-45915938 None:intergenic 35.0%
!!! TAGGGATATTTTTTGACTCG+TGG + chr1_3:45915920-45915939 None:intergenic 35.0%
!!! AATCGCAAGTTTTGATTCAC+AGG + chr1_3:45915968-45915987 None:intergenic 35.0%
TTCTTGGTTTCAGATTGTAG+TGG - chr1_3:45916151-45916170 Msa0120760:intron 35.0%
TCTTGGTTTCAGATTGTAGT+GGG - chr1_3:45916152-45916171 Msa0120760:intron 35.0%
ACAACAACAAGCCTCTTAAA+AGG - chr1_3:45916195-45916214 Msa0120760:intron 35.0%
GGCAAAGAAATATTGATGTC+AGG + chr1_3:45916470-45916489 None:intergenic 35.0%
TTCTTTGCCTGATGAATAGA+TGG - chr1_3:45916481-45916500 Msa0120760:CDS 35.0%
ACCAAAACCATCTATTCATC+AGG + chr1_3:45916491-45916510 None:intergenic 35.0%
TCACTAATATGACGGCTTTA+AGG - chr1_3:45916542-45916561 Msa0120760:CDS 35.0%
! CACTAATATGACGGCTTTAA+GGG - chr1_3:45916543-45916562 Msa0120760:CDS 35.0%
! TGCTTGATGTCATTTCCTTT+AGG - chr1_3:45916601-45916620 Msa0120760:CDS 35.0%
GAATGAGATGATGATCTAGT+TGG - chr1_3:45916659-45916678 Msa0120760:CDS 35.0%
AATGTAAGCAATTGCTTGGA+TGG + chr1_3:45916905-45916924 None:intergenic 35.0%
TAGGAATGTAAGCAATTGCT+TGG + chr1_3:45916909-45916928 None:intergenic 35.0%
AACAGTTACAATAAGACGAC+GGG + chr1_3:45916939-45916958 None:intergenic 35.0%
TAACGGAATGAAACTAACAG+CGG - chr1_3:45916998-45917017 Msa0120760:five_prime_UTR 35.0%
!! TTGAAGCAGTAGTACTGGTA+GGG + chr1_3:45912703-45912722 None:intergenic 40.0%
!! ATTGAAGCAGTAGTACTGGT+AGG + chr1_3:45912704-45912723 None:intergenic 40.0%
CGCCATTTGAATACTCTTCT+TGG - chr1_3:45912738-45912757 Msa0120760:three_prime_UTR 40.0%
! AACATTGCTGTTGTTGTGCA+TGG + chr1_3:45912890-45912909 None:intergenic 40.0%
!! AAACTTCCTGGTGTTGTTGT+TGG + chr1_3:45913048-45913067 None:intergenic 40.0%
AACAACAACACCAGGAAGTT+TGG - chr1_3:45913047-45913066 Msa0120760:intron 40.0%
CCAAACAAATCCAAACTTCC+TGG + chr1_3:45913060-45913079 None:intergenic 40.0%
! CCAGGAAGTTTGGATTTGTT+TGG - chr1_3:45913057-45913076 Msa0120760:intron 40.0%
! CCATCAGCGTCATATTTTCT+TGG + chr1_3:45913102-45913121 None:intergenic 40.0%
CCAAGAAAATATGACGCTGA+TGG - chr1_3:45913099-45913118 Msa0120760:intron 40.0%
!! GGTGATGTTAGTATTGGTGT+TGG + chr1_3:45913162-45913181 None:intergenic 40.0%
! TGATTTACCACGACCCTTTT+TGG + chr1_3:45913220-45913239 None:intergenic 40.0%
TTTCAGTTAGGGTTCAAGGT+CGG - chr1_3:45913584-45913603 Msa0120760:intron 40.0%
AATCACAGTTTATGCAGGAG+AGG - chr1_3:45913808-45913827 Msa0120760:intron 40.0%
!! GCAATCTCTAAAGTTGCACT+AGG - chr1_3:45914040-45914059 Msa0120760:intron 40.0%
!!! GCATTTTGACTTATGAGGCA+TGG - chr1_3:45914086-45914105 Msa0120760:intron 40.0%
CACTTGAGCTAATCTCATGA+TGG + chr1_3:45914356-45914375 None:intergenic 40.0%
! TAGCTAGTGGACAATGTCTA+TGG + chr1_3:45914705-45914724 None:intergenic 40.0%
TACGCTATACGCTAGTTGTT+TGG + chr1_3:45915545-45915564 None:intergenic 40.0%
AATTTGACCCATGAGGATGA+TGG + chr1_3:45915876-45915895 None:intergenic 40.0%
GGAACAAAATTTGACCCATG+AGG + chr1_3:45915883-45915902 None:intergenic 40.0%
ATAATTCGCGTGGCATTTGT+GGG + chr1_3:45916003-45916022 None:intergenic 40.0%
AATAATTCGCGTGGCATTTG+TGG + chr1_3:45916004-45916023 None:intergenic 40.0%
CTTGGTTTCAGATTGTAGTG+GGG - chr1_3:45916153-45916172 Msa0120760:intron 40.0%
! CGTTGGTACTTCCTTTTAAG+AGG + chr1_3:45916209-45916228 None:intergenic 40.0%
! ATTTCTGGACCAGTTGAAGT+TGG + chr1_3:45916251-45916270 None:intergenic 40.0%
GGAAGCTGATGAGACATAAT+AGG + chr1_3:45916332-45916351 None:intergenic 40.0%
GATTCTCTCTGGATTTGATC+AGG + chr1_3:45916353-45916372 None:intergenic 40.0%
CTGTTCCAAGTATCATCATC+AGG + chr1_3:45916416-45916435 None:intergenic 40.0%
! GCCTGATGAATAGATGGTTT+TGG - chr1_3:45916487-45916506 Msa0120760:CDS 40.0%
GACATGAAACGTCATGTCAT+AGG + chr1_3:45916524-45916543 None:intergenic 40.0%
!! TAATATGACGGCTTTAAGGG+TGG - chr1_3:45916546-45916565 Msa0120760:CDS 40.0%
!! TGATCTAGTTGGTGTCAGTT+CGG - chr1_3:45916670-45916689 Msa0120760:CDS 40.0%
ACAGTTACAATAAGACGACG+GGG + chr1_3:45916938-45916957 None:intergenic 40.0%
!! TCTGATTTCAGGTAATGGAG+AGG - chr1_3:45916966-45916985 Msa0120760:five_prime_UTR 40.0%
ACTAACAGCGGAATTTGTGA+TGG - chr1_3:45917010-45917029 Msa0120760:five_prime_UTR 40.0%
! GTTGTTGTTGGTGTGACTGT+TGG + chr1_3:45913036-45913055 None:intergenic 45.0%
! CCTGGTGGTGATGTTAGTAT+TGG + chr1_3:45913168-45913187 None:intergenic 45.0%
CCAATACTAACATCACCACC+AGG - chr1_3:45913165-45913184 Msa0120760:intron 45.0%
GTAGACAAAGTGAATCCTGG+TGG + chr1_3:45913183-45913202 None:intergenic 45.0%
! TTTTCCTCCAAAAAGGGTCG+TGG - chr1_3:45913210-45913229 Msa0120760:intron 45.0%
! TTTACCACGACCCTTTTTGG+AGG + chr1_3:45913217-45913236 None:intergenic 45.0%
AAGGGTCGTGGTAAATCAAC+CGG - chr1_3:45913222-45913241 Msa0120760:intron 45.0%
! GTCACTTTGTAGGATGTTGG+TGG - chr1_3:45913956-45913975 Msa0120760:intron 45.0%
TTTGCACAGAAGAGTCCAAG+AGG - chr1_3:45913992-45914011 Msa0120760:intron 45.0%
AAAGTTGCACTAGGTCAACC+TGG - chr1_3:45914049-45914068 Msa0120760:intron 45.0%
GGCCCATATATGTCAACAGT+AGG - chr1_3:45914243-45914262 Msa0120760:intron 45.0%
GTGACAACTTCTCTAGCTAG+TGG + chr1_3:45914718-45914737 None:intergenic 45.0%
TACACGGCTTCTGACAATAG+TGG - chr1_3:45915106-45915125 Msa0120760:intron 45.0%
TAGTGGCATAAGAACTCGAG+AGG - chr1_3:45915123-45915142 Msa0120760:intron 45.0%
AGTGGCATAAGAACTCGAGA+GGG - chr1_3:45915124-45915143 Msa0120760:intron 45.0%
! CACTATGGCTCTGTTTGTCA+AGG - chr1_3:45915519-45915538 Msa0120760:intron 45.0%
GCATTTGTGGGTGATTTGAG+TGG + chr1_3:45915991-45916010 None:intergenic 45.0%
AGCTTGAGCAATAATTCGCG+TGG + chr1_3:45916013-45916032 None:intergenic 45.0%
GTACCAACGTGAACAAACAG+TGG - chr1_3:45916220-45916239 Msa0120760:intron 45.0%
AAGCCACTGTTTGTTCACGT+TGG + chr1_3:45916226-45916245 None:intergenic 45.0%
CCAAGTATCATCATCAGGAG+TGG + chr1_3:45916411-45916430 None:intergenic 45.0%
! CCACTCCTGATGATGATACT+TGG - chr1_3:45916408-45916427 Msa0120760:intron 45.0%
CATCAAGCATTAGTCCGACA+TGG + chr1_3:45916590-45916609 None:intergenic 45.0%
TAAGACGACGGGGAAAATGT+AGG + chr1_3:45916928-45916947 None:intergenic 45.0%
CGGAATTTGTGATGGCAACT+AGG - chr1_3:45917018-45917037 Msa0120760:five_prime_UTR 45.0%
!! CAGTAGTACTGGTAGGGAAG+AGG + chr1_3:45912697-45912716 None:intergenic 50.0%
GTCACACCAACAACAACACC+AGG - chr1_3:45913039-45913058 Msa0120760:intron 50.0%
AGGGTCGTGGTAAATCAACC+GGG - chr1_3:45913223-45913242 Msa0120760:intron 50.0%
AAATCCACAGCAGCTGTGCT+TGG + chr1_3:45913776-45913795 None:intergenic 50.0%
!! CTAGGTCAACCTGGTTCTAC+TGG - chr1_3:45914058-45914077 Msa0120760:intron 50.0%
ATGCTACCACCAGTAGAACC+AGG + chr1_3:45914070-45914089 None:intergenic 50.0%
TCTGTCTGTCTGTCTGTCTC+AGG - chr1_3:45914916-45914935 Msa0120760:intron 50.0%
GGATTGAGTGTCTCACTAGC+TGG - chr1_3:45915148-45915167 Msa0120760:intron 50.0%
!! GTAATTGGAGGTGCTGTTGC+TGG - chr1_3:45915184-45915203 Msa0120760:intron 50.0%
GCTGGTGTTCTTATAGCTGC+TGG - chr1_3:45915202-45915221 Msa0120760:intron 50.0%
!!! AAGCGAGGCGTGGTTTTGTA+GGG + chr1_3:45915938-45915957 None:intergenic 50.0%
TTCACAGGTCATGACAAGCG+AGG + chr1_3:45915953-45915972 None:intergenic 50.0%
GTGGCTTCTCCAACTTCAAC+TGG - chr1_3:45916239-45916258 Msa0120760:intron 50.0%
! CGTGCTGCTGTGACTATTTC+TGG + chr1_3:45916266-45916285 None:intergenic 50.0%
GTGTCTCGCATAGTCCATGT+CGG - chr1_3:45916573-45916592 Msa0120760:CDS 50.0%
!! GGATGGAGAAGTGTCTCATG+TGG + chr1_3:45916888-45916907 None:intergenic 50.0%
!! AGGTAATGGAGAGGCTGACA+TGG - chr1_3:45916975-45916994 Msa0120760:five_prime_UTR 50.0%
TGGAGAGGCTGACATGGTAA+CGG - chr1_3:45916981-45917000 Msa0120760:five_prime_UTR 50.0%
GTTTCCAAGCACAGCTGCTG+TGG - chr1_3:45913769-45913788 Msa0120760:intron 55.0%
!! GGTCAACCTGGTTCTACTGG+TGG - chr1_3:45914061-45914080 Msa0120760:intron 55.0%
GGCATAAGAACTCGAGAGGG+TGG - chr1_3:45915127-45915146 Msa0120760:intron 55.0%
GTCTCACTAGCTGGTCCTGA+CGG - chr1_3:45915157-45915176 Msa0120760:intron 55.0%
GGTCCTGACGGTCGAGTAAT+TGG - chr1_3:45915169-45915188 Msa0120760:intron 55.0%
CCTCCAATTACTCGACCGTC+AGG + chr1_3:45915175-45915194 None:intergenic 55.0%
CCTGACGGTCGAGTAATTGG+AGG - chr1_3:45915172-45915191 Msa0120760:intron 55.0%
CTCGTGGGTCGTTGCTTACT+CGG + chr1_3:45915904-45915923 None:intergenic 55.0%
!!! CAAGCGAGGCGTGGTTTTGT+AGG + chr1_3:45915939-45915958 None:intergenic 55.0%
GTGGGGAGCTTCGTGTCAAA+TGG - chr1_3:45916170-45916189 Msa0120760:intron 55.0%
GTGTCTCATGTGGTCTGCAG+CGG + chr1_3:45916878-45916897 None:intergenic 55.0%
AGGTCATGACAAGCGAGGCG+TGG + chr1_3:45915948-45915967 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 45912615 45917119 45912615 ID=Msa0120760;Name=Msa0120760
chr1_3 mRNA 45912615 45917119 45912615 ID=Msa0120760-mRNA-1;Parent=Msa0120760;Name=Msa0120760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=262|1|1|1|0.8|0.66|6|152|366
chr1_3 exon 45912615 45912757 45912615 ID=Msa0120760-mRNA-1:exon:13768;Parent=Msa0120760-mRNA-1
chr1_3 exon 45913226 45913570 45913226 ID=Msa0120760-mRNA-1:exon:13767;Parent=Msa0120760-mRNA-1
chr1_3 exon 45914500 45914661 45914500 ID=Msa0120760-mRNA-1:exon:13766;Parent=Msa0120760-mRNA-1
chr1_3 exon 45915632 45915766 45915632 ID=Msa0120760-mRNA-1:exon:13765;Parent=Msa0120760-mRNA-1
chr1_3 exon 45915905 45915972 45915905 ID=Msa0120760-mRNA-1:exon:13764;Parent=Msa0120760-mRNA-1
chr1_3 exon 45916458 45917119 45916458 ID=Msa0120760-mRNA-1:exon:13763;Parent=Msa0120760-mRNA-1
chr1_3 five_prime_UTR 45916858 45917119 45916858 ID=Msa0120760-mRNA-1:five_prime_utr;Parent=Msa0120760-mRNA-1
chr1_3 CDS 45916458 45916857 45916458 ID=Msa0120760-mRNA-1:cds;Parent=Msa0120760-mRNA-1
chr1_3 CDS 45915905 45915972 45915905 ID=Msa0120760-mRNA-1:cds;Parent=Msa0120760-mRNA-1
chr1_3 CDS 45915632 45915766 45915632 ID=Msa0120760-mRNA-1:cds;Parent=Msa0120760-mRNA-1
chr1_3 CDS 45914500 45914661 45914500 ID=Msa0120760-mRNA-1:cds;Parent=Msa0120760-mRNA-1
chr1_3 CDS 45913235 45913570 45913235 ID=Msa0120760-mRNA-1:cds;Parent=Msa0120760-mRNA-1
chr1_3 three_prime_UTR 45913226 45913234 45913226 ID=Msa0120760-mRNA-1:three_prime_utr;Parent=Msa0120760-mRNA-1
chr1_3 three_prime_UTR 45912615 45912757 45912615 ID=Msa0120760-mRNA-1:three_prime_utr;Parent=Msa0120760-mRNA-1
Gene Sequence

>Msa0120760

ATGGAACAAACCATGCACAACAACAGCAATGTTTCAGTTGGGTCACCACAAGAACTAGCAACAACAAACACATTACCTCAAGAAATGAACATGAACATAAGTGTTGGAAACAGTATTGTAACTACTATTGGAACATCAATAGTTGCTTTAGAAGCACCAACAGTCACACCAACAACAACACCAGGAAGTTTGGATTTGTTTGGTAAGAAAAAGAGAGGTAGACCAAGAAAATATGACGCTGATGGAAACCTAAATCCAAGTTACAAGAAGATTGTTAAAACACCAACACCAATACTAACATCACCACCAGGATTCACTTTGTCTACAAATGAGTTTTCCTCCAAAAAGGGTCGTGGTAAATCAACCGGGTTTGTTAATTACCAAACCTTTTCTTCTTTTGGTGAGGTGTTTCCAAGCACAGCTGCTGTGGATTTTACACCACATGTAATCACAGTTTATGCAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGGAATATGCATTCTTTCTGCCAATGGAGCAATCTCTAAAGTTGCACTAGGTCAACCTGGTTCTACTGGTGGTAGCATTTTGACTTATGAGGGTCGATTTGAGATTCTATCTTTGTCTGGATCTTACACGGCTTCTGACAATAGTGGCATAAGAACTCGAGAGGGTGGATTGAGTGTCTCACTAGCTGGTCCTGACGGTCGAGTAATTGGAGGTGCTGTTGCTGGTGTTCTTATAGCTGCTGGCCCCATACAAATTGTAGTGGGGAGCTTCGTGTCAAATGGTAACAACAACAAGCCTCTTAAAAGGAAGTACCAACGTGAACAAACAGTGGCTTCTCCAACTTCAACTGGTCCAGAAATAGTCACAGCAGCACGACCTATCTCACAAGCAAATATTCATGGTGAAAACTTTATGATACCTATTATGTCTCATCAGCTTCCTGATCAAATCCAGAGAGAATCTATCAATGTTTCAAGTGATAAACTGAACTTAGATGCCACTCCTGATGATGATACTTGGAACAGTTCTGATGAATATTCAGATCAAAGGACATCCCCTGACATCAATATTTCTTTGCCTGATGAATAG
Protein sequence

>Msa0120760

MEQTMHNNSNVSVGSPQELATTNTLPQEMNMNISVGNSIVTTIGTSIVALEAPTVTPTTTPGSLDLFGKKKRGRPRKYDADGNLNPSYKKIVKTPTPILTSPPGFTLSTNEFSSKKGRGKSTGFVNYQTFSSFGEVFPSTAAVDFTPHVITVYAGEDVGGKILSFAQKSPRGICILSANGAISKVALGQPGSTGGSILTYEGRFEILSLSGSYTASDNSGIRTREGGLSVSLAGPDGRVIGGAVAGVLIAAGPIQIVVGSFVSNGNNNKPLKRKYQREQTVASPTSTGPEIVTAARPISQANIHGENFMIPIMSHQLPDQIQRESINVSSDKLNLDATPDDDTWNSSDEYSDQRTSPDINISLPDE*