AlfalfaGEDB | Msa0161890

M. sativa cultivar zhongmu-4 / Msa0161890

KEGG: -
GO: -
PFAM: PF03479.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161890	XP_003590386.2	97.003	367	9	2	1	366	1	366	0.0	716

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161890	sp\|Q8VYJ2\|AHL1_ARATH	48.548	241	110	4	69	304	89	320	1.99e-62	206

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161890	A0A396JTT3	97.003	367	9	2	1	366	1	366	0.0	716

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0041790	Msa0161890	0.811341	7.350288e-51	-8.615850e-47
Msa0120760	Msa0161890	0.830422	2.963954e-55	-8.615850e-47
Msa0125590	Msa0161890	0.809793	1.587093e-50	-8.615850e-47
Msa0140380	Msa0161890	0.801887	7.282442e-49	-8.615850e-47
Msa0161890	Msa0165830	0.804022	2.636760e-49	-8.615850e-47
Msa0161890	Msa0168380	0.806928	6.481019e-50	-8.615850e-47
Msa0161890	Msa0314870	0.810768	9.782437e-51	-8.615850e-47
Msa0161890	Msa0373170	0.800696	1.277089e-48	-8.615850e-47
Msa0161890	Msa0382230	0.842900	1.949554e-58	-8.615850e-47
Msa0161890	Msa0431740	0.814480	1.508081e-51	-8.615850e-47
Msa0161890	Msa0467690	0.802291	6.016268e-49	-8.615850e-47
Msa0161890	Msa0468620	0.804794	1.820588e-49	-8.615850e-47
Msa0161890	Msa0477630	0.801883	7.297483e-49	-8.615850e-47
Msa0161890	Msa0500570	0.818038	2.415004e-52	-8.615850e-47
Msa0161890	Msa0506540	0.807574	4.730772e-50	-8.615850e-47
Msa0161890	Msa0514020	0.807589	4.695090e-50	-8.615850e-47
Msa0161890	Msa0514500	0.806174	9.351708e-50	-8.615850e-47
Msa0161890	Msa0520680	0.834902	2.290852e-56	-8.615850e-47
Msa0161890	Msa0553750	0.801097	1.057401e-48	-8.615850e-47
Msa0161890	Msa0572830	0.817227	3.677768e-52	-8.615850e-47
Msa0161890	Msa0607800	0.805886	1.075105e-49	-8.615850e-47
Msa0161890	Msa0640800	0.808714	2.704121e-50	-8.615850e-47
Msa0161890	Msa0648040	0.820807	5.643318e-53	-8.615850e-47
Msa0161890	Msa0690740	0.826119	3.230774e-54	-8.615850e-47
Msa0161890	Msa0707260	0.827848	1.247205e-54	-8.615850e-47
Msa0161890	Msa0717900	0.801424	9.065197e-49	-8.615850e-47
Msa0161890	Msa0816080	0.802561	5.291321e-49	-8.615850e-47
Msa0161890	Msa0900760	0.805397	1.361627e-49	-8.615850e-47
Msa0161890	Msa0909760	0.806687	7.287478e-50	-8.615850e-47
Msa0161890	Msa0926310	0.810878	9.258216e-51	-8.615850e-47
Msa0161890	Msa1000780	0.826779	2.249230e-54	-8.615850e-47
Msa0161890	Msa1339230	0.803411	3.530970e-49	-8.615850e-47
Msa0161890	Msa1393560	0.800793	1.220016e-48	-8.615850e-47
Msa0161890	Msa1399190	0.832597	8.631257e-56	-8.615850e-47
Msa0161890	Msa1426320	0.804762	1.849072e-49	-8.615850e-47
Msa0161890	Msa1435100	0.834892	2.304351e-56	-8.615850e-47
Msa0161890	Msa1439730	0.843436	1.402794e-58	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161890	MtrunA17_Chr1g0179461	97.003	367	9	2	1	366	1	366	0.0	716
Msa0161890	MtrunA17_Chr7g0245841	43.769	329	145	10	47	365	35	333	3.45e-60	197
Msa0161890	MtrunA17_Chr8g0349091	50.235	213	95	3	69	281	89	290	1.29e-51	175
Msa0161890	MtrunA17_Chr8g0351761	41.615	322	137	10	64	365	66	356	2.32e-48	167
Msa0161890	MtrunA17_Chr1g0188211	40.836	311	142	11	69	356	49	340	1.31e-46	162
Msa0161890	MtrunA17_Chr5g0397551	45.631	206	98	3	69	274	70	261	2.57e-46	160
Msa0161890	MtrunA17_Chr4g0056761	48.485	231	108	6	58	284	61	284	2.59e-46	160
Msa0161890	MtrunA17_Chr4g0054661	41.379	261	126	7	61	308	65	311	3.56e-46	160
Msa0161890	MtrunA17_Chr7g0247431	43.299	194	101	2	69	262	89	273	3.28e-43	153
Msa0161890	MtrunA17_Chr8g0386741	43.478	230	112	5	69	289	97	317	1.77e-42	151
Msa0161890	MtrunA17_Chr5g0398621	40.889	225	103	5	68	288	45	243	5.62e-41	144
Msa0161890	MtrunA17_Chr6g0476061	40.613	261	121	8	69	314	51	292	1.07e-36	135
Msa0161890	MtrunA17_Chr1g0190011	39.151	212	112	5	53	261	25	222	2.01e-31	121
Msa0161890	MtrunA17_Chr4g0027371	45.399	163	77	5	134	293	8	161	2.44e-30	116
Msa0161890	MtrunA17_Chr4g0027351	54.237	118	50	3	140	256	14	128	1.15e-27	105
Msa0161890	MtrunA17_Chr7g0274821	41.176	204	89	5	69	262	74	256	1.68e-27	111
Msa0161890	MtrunA17_Chr1g0165101	35.075	268	127	8	16	267	48	284	7.64e-27	109
Msa0161890	MtrunA17_Chr4g0027331	52.101	119	53	3	140	255	14	131	3.94e-26	102
Msa0161890	MtrunA17_Chr3g0133051	34.109	129	85	0	145	273	101	229	1.94e-20	90.1
Msa0161890	MtrunA17_Chr5g0427311	34.109	129	82	2	146	273	81	207	1.62e-19	86.7
Msa0161890	MtrunA17_Chr6g0476241	36.735	196	95	9	69	262	120	288	6.08e-19	86.3
Msa0161890	MtrunA17_Chr4g0027301	40.800	125	70	3	135	256	16	139	1.85e-18	81.3
Msa0161890	MtrunA17_Chr5g0417581	41.985	131	59	4	146	261	20	148	2.18e-18	82.4
Msa0161890	MtrunA17_Chr3g0086021	38.211	123	69	2	157	276	118	236	2.80e-18	84.3
Msa0161890	MtrunA17_Chr3g0112131	40.800	125	70	2	148	272	109	229	1.15e-17	82.8
Msa0161890	MtrunA17_Chr5g0398531	41.600	125	69	2	148	272	130	250	5.25e-16	78.2
Msa0161890	MtrunA17_Chr5g0443311	37.500	184	99	5	90	272	33	201	1.10e-15	76.3
Msa0161890	MtrunA17_Chr4g0054651	39.259	135	78	2	148	282	106	236	1.59e-15	76.3
Msa0161890	MtrunA17_Chr1g0168121	39.516	124	71	2	148	271	72	191	3.21e-15	75.1
Msa0161890	MtrunA17_Chr8g0351651	41.600	125	69	2	148	272	116	236	5.10e-15	75.1
Msa0161890	MtrunA17_Chr7g0250031	41.935	124	68	2	148	271	87	206	1.60e-14	73.2
Msa0161890	MtrunA17_Chr1g0190051	44.348	115	58	3	148	261	104	213	7.85e-13	68.6
Msa0161890	MtrunA17_Chr5g0435681	38.261	115	67	2	149	263	120	230	6.59e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161890	AT4G12080.1	48.548	241	110	4	69	304	89	320	2.02e-63	206
Msa0161890	AT4G25320.1	46.058	241	107	6	69	296	86	316	5.15e-55	186
Msa0161890	AT2G45850.1	46.009	213	102	3	69	281	98	297	7.11e-54	181
Msa0161890	AT2G45850.2	46.009	213	102	3	69	281	98	297	7.11e-54	181
Msa0161890	AT5G62260.1	45.413	218	102	4	69	274	76	288	2.96e-53	181
Msa0161890	AT5G62260.3	45.413	218	102	4	69	274	76	288	2.96e-53	181
Msa0161890	AT2G33620.1	48.804	209	72	6	69	265	97	282	3.79e-50	172
Msa0161890	AT2G33620.4	48.804	209	72	6	69	265	97	282	3.79e-50	172
Msa0161890	AT2G33620.2	48.804	209	72	6	69	265	97	282	3.79e-50	172
Msa0161890	AT2G33620.3	48.804	209	72	6	69	265	97	282	3.79e-50	172
Msa0161890	AT5G62260.2	46.500	200	90	4	69	256	76	270	3.98e-50	170
Msa0161890	AT4G22770.2	48.444	225	98	7	69	284	72	287	2.99e-49	169
Msa0161890	AT4G22770.1	48.444	225	98	7	69	284	72	287	2.99e-49	169
Msa0161890	AT4G00200.2	47.619	252	94	5	43	283	36	260	4.64e-49	168
Msa0161890	AT4G00200.1	47.619	252	94	5	43	283	36	260	4.64e-49	168
Msa0161890	AT2G45850.3	47.872	188	85	3	69	256	98	272	8.23e-49	166
Msa0161890	AT1G63470.1	46.667	195	96	4	69	262	105	292	7.69e-46	161
Msa0161890	AT5G51590.1	44.978	229	81	6	69	263	78	295	1.26e-45	161
Msa0161890	AT3G61310.1	45.238	210	101	3	69	278	101	296	5.08e-44	155
Msa0161890	AT1G63480.2	41.121	214	103	5	69	276	99	295	5.15e-43	153
Msa0161890	AT1G63480.1	41.121	214	103	5	69	276	99	295	5.15e-43	153
Msa0161890	AT1G63480.5	41.121	214	103	5	69	276	93	289	6.63e-43	152
Msa0161890	AT1G63480.7	41.121	214	103	5	69	276	93	289	6.63e-43	152
Msa0161890	AT1G63480.4	41.121	214	103	5	69	276	93	289	6.63e-43	152
Msa0161890	AT1G63480.3	41.121	214	103	5	69	276	93	289	6.63e-43	152
Msa0161890	AT1G63480.6	41.121	214	103	5	69	276	93	289	6.63e-43	152
Msa0161890	AT4G17950.1	39.916	238	115	5	69	286	131	360	5.40e-40	147
Msa0161890	AT5G46640.1	40.639	219	95	6	69	269	102	303	1.94e-34	131
Msa0161890	AT3G04590.1	42.714	199	88	5	69	261	105	283	2.52e-34	129
Msa0161890	AT3G04590.2	42.714	199	88	5	69	261	105	283	2.04e-33	129
Msa0161890	AT2G36560.1	35.577	208	114	7	144	347	104	295	2.25e-26	110
Msa0161890	AT3G60870.1	41.026	117	63	2	145	261	86	196	3.16e-20	89.7
Msa0161890	AT2G45430.1	41.727	139	75	2	148	283	119	254	3.77e-18	84.7
Msa0161890	AT1G14490.2	34.559	136	86	2	145	277	49	184	1.82e-17	80.9
Msa0161890	AT1G14490.1	34.815	135	85	2	146	277	31	165	2.78e-17	80.1
Msa0161890	AT4G12050.1	40.000	125	72	1	148	272	148	269	6.40e-17	81.3
Msa0161890	AT5G49700.1	36.585	123	69	3	145	261	83	202	9.09e-17	80.1
Msa0161890	AT2G42940.1	43.966	116	59	3	148	262	83	193	9.23e-16	76.6
Msa0161890	AT1G76500.1	36.066	122	67	2	148	261	102	220	3.79e-15	75.9
Msa0161890	AT4G22810.1	39.370	127	72	2	148	272	135	258	4.61e-15	75.9
Msa0161890	AT5G28590.1	40.678	118	43	3	145	261	30	121	2.57e-14	71.6
Msa0161890	AT2G35270.1	37.594	133	79	2	148	280	108	236	3.67e-13	69.7
Msa0161890	AT3G55560.1	38.793	116	68	2	148	263	118	230	5.02e-13	69.7
Msa0161890	AT4G35390.1	38.261	115	67	2	148	261	93	204	9.20e-13	68.6
Msa0161890	AT4G17800.1	38.889	126	73	2	148	273	112	233	1.40e-12	68.2
Msa0161890	AT3G04570.1	39.695	131	69	2	148	271	110	237	3.05e-12	67.4
Msa0161890	AT4G14465.1	35.433	127	78	2	148	274	97	219	2.04e-11	64.3

Find 100 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTTCAAGCTTTCCATTTC+TGG	0.001701	1_4:-37990346	Msa0161890:five_prime_UTR
CGTGCTGCTGTGACTATTTC+TGG	0.182840	1_4:+37986856	None:intergenic
TCTTCTTGTAACTTGGATTT+AGG	0.193712	1_4:+37990022	None:intergenic
CGCCATTTGAATACTCTTCT+TGG	0.220102	1_4:-37990408	Msa0161890:five_prime_UTR
ATTAGAAAGCAGTATTATTA+TGG	0.265227	1_4:-37986049	Msa0161890:three_prime_UTR
AAATACAAATTAAATGAAAA+AGG	0.292668	1_4:-37990537	None:intergenic
GGTCCTGACGGTCGAGTAAT+TGG	0.293984	1_4:-37987974	Msa0161890:CDS
AACAACAACACCAGGAAGTT+TGG	0.299197	1_4:-37990100	Msa0161890:CDS
TGCTTCAATTCTTCTCTTAG+TGG	0.311696	1_4:-37990431	Msa0161890:five_prime_UTR
AACAGTATTGTAACTACTAT+TGG	0.316379	1_4:-37990162	Msa0161890:CDS
TTCTTTGCCTGATGAATAGA+TGG	0.316756	1_4:-37986638	Msa0161890:exon
ACAACAACAAGCCTCTTAAA+AGG	0.320963	1_4:-37986924	Msa0161890:CDS
AAGGGTCGTGGTAAATCAAC+TGG	0.351381	1_4:-37989925	Msa0161890:CDS
TGAATATTTGCTTGTGAGAT+AGG	0.357972	1_4:+37986832	None:intergenic
AAGAAAATATCATACTTGTA+TGG	0.364052	1_4:+37987916	None:intergenic
GCCTGATGAATAGATGGTTT+TGG	0.366145	1_4:-37986632	Msa0161890:intron
CCAGGAAGTTTGGATTTGTT+TGG	0.373812	1_4:-37990090	Msa0161890:CDS
CCAAACAAATCCAAACTTCC+TGG	0.377742	1_4:+37990090	None:intergenic
TTTGAGATTCTATCTTTGTC+TGG	0.383251	1_4:-37988064	Msa0161890:CDS
GGAAGGTGATGAGACATAAT+AGG	0.397317	1_4:+37986790	None:intergenic
ATCTCACAAGCAAATATTCA+TGG	0.403263	1_4:-37986829	Msa0161890:CDS
GGCAAAGAAATATTGATGTC+AGG	0.404726	1_4:+37986652	None:intergenic
AAACATTGATAGATTCTCTC+TGG	0.408364	1_4:+37986758	None:intergenic
AAACTTCCTGGTGTTGTTGT+TGG	0.414109	1_4:+37990102	None:intergenic
CTAGGTCAACCTGGTTCTAC+TGG	0.416830	1_4:-37989087	Msa0161890:CDS
CACCAAAAGAAGAAAATGTT+TGG	0.425017	1_4:+37989890	None:intergenic
GCTGGTGTTCTTATAGCTGC+TGG	0.429689	1_4:-37987941	Msa0161890:CDS
GTAATTGGAGGTGCTGTTGC+TGG	0.430460	1_4:-37987959	Msa0161890:CDS
TTAACAATCTTCTTGTAACT+TGG	0.437261	1_4:+37990015	None:intergenic
CCACTCCTGATGATGATACT+TGG	0.440882	1_4:-37986711	Msa0161890:CDS
AGAAAATATCATACTTGTAT+GGG	0.443003	1_4:+37987917	None:intergenic
GATTCTCTCTGGATTTGATC+AGG	0.443447	1_4:+37986769	None:intergenic
TCTTTATATATTGTTTCTCA+TGG	0.446469	1_4:-37990289	Msa0161890:exon
ACCAAAACCATCTATTCATC+AGG	0.449295	1_4:+37986631	None:intergenic
AACCAAGAAGAGTATTCAAA+TGG	0.450734	1_4:+37990406	None:intergenic
AACTTTAGAGATTGCTCCAT+TGG	0.453949	1_4:+37989113	None:intergenic
GTGGCTTCTCCAACTTCAAC+TGG	0.454329	1_4:-37986880	Msa0161890:CDS
GAAAGAATGCATATTCCTCT+TGG	0.455886	1_4:+37989138	None:intergenic
AAGAATTGAAGCAGTAGTAC+TGG	0.466129	1_4:+37990441	None:intergenic
GGATTGAGTGTCTCACTAGC+TGG	0.467914	1_4:-37987995	Msa0161890:CDS
CTTTCCATTTCTGGAAACAA+AGG	0.471831	1_4:-37990337	Msa0161890:five_prime_UTR
AAATCCACAGCAGCTGTGCT+TGG	0.476159	1_4:+37989374	None:intergenic
CTGTTCCAAGTATCATCATC+AGG	0.478067	1_4:+37986706	None:intergenic
TCTTGGTTTCAGATTGTAGT+GGG	0.483076	1_4:-37986967	Msa0161890:intron
AACATTGCTGTTGTTGTGCA+TGG	0.483243	1_4:+37990260	None:intergenic
TTTGTCACTTTGTAGGATGT+TGG	0.483338	1_4:-37989192	Msa0161890:intron
ATTTCTGGACCAGTTGAAGT+TGG	0.494397	1_4:+37986871	None:intergenic
CGGAATTTGTGATGACAACT+AGG	0.496503	1_4:-37986101	Msa0161890:three_prime_UTR
GTTGTTGTTGGTGTGACTGT+TGG	0.501545	1_4:+37990114	None:intergenic
CAGTAGTACTGGTAGGGAAG+AGG	0.501800	1_4:+37990452	None:intergenic
AACAACAGCAATGTTTCAGT+TGG	0.502217	1_4:-37990252	Msa0161890:CDS
ATATGCATTCTTTCTGCCAA+TGG	0.504376	1_4:-37989129	Msa0161890:CDS
GTGGGGAGCTTCGTGTCAAA+TGG	0.505548	1_4:-37986949	Msa0161890:CDS
ATGTTCATGTTCATTTCTTG+AGG	0.510057	1_4:+37990195	None:intergenic
CCAAGAAAATATGATGCTGA+TGG	0.513931	1_4:-37990048	Msa0161890:CDS
GTCACACCAACAACAACACC+AGG	0.516153	1_4:-37990108	Msa0161890:CDS
GTTTCCAAGCACAGCTGCTG+TGG	0.518458	1_4:-37989378	Msa0161890:CDS
GCAAAGAAATATTGATGTCA+GGG	0.519620	1_4:+37986653	None:intergenic
ATCTTTGTCTGGATCTTACA+CGG	0.521033	1_4:-37988053	Msa0161890:CDS
CCTCCAATTACTCGACCGTC+AGG	0.528246	1_4:+37987971	None:intergenic
CCTGGTGGTGATGTTAGTAT+TGG	0.530826	1_4:+37989982	None:intergenic
ACAACAGCAATGTTTCAGTT+GGG	0.533238	1_4:-37990251	Msa0161890:CDS
GGTGATGTTAGTATTGGTGT+TGG	0.537464	1_4:+37989988	None:intergenic
ATGAACATGAACATAAGTGT+TGG	0.538632	1_4:-37990186	Msa0161890:CDS
TACACGGCTTCTGACAATAG+TGG	0.542066	1_4:-37988037	Msa0161890:CDS
TGAAATGAGAGAAAAGTGAA+AGG	0.550103	1_4:+37990362	None:intergenic
GTCACTTTGTAGGATGTTGG+TGG	0.552302	1_4:-37989189	Msa0161890:intron
TTTGTAGACAAAGTGAATCC+TGG	0.553687	1_4:+37989964	None:intergenic
ATTGAAGCAGTAGTACTGGT+AGG	0.553919	1_4:+37990445	None:intergenic
CTCTCTGGATTTGATCAGGA+AGG	0.554977	1_4:+37986773	None:intergenic
CATGTAATCACAGTTTATGC+AGG	0.557312	1_4:-37989344	Msa0161890:CDS
TTGAAGCAGTAGTACTGGTA+GGG	0.558052	1_4:+37990446	None:intergenic
CTGATGAATATTCAGATCAA+AGG	0.560465	1_4:-37986681	Msa0161890:CDS
GTCTCACTAGCTGGTCCTGA+CGG	0.568347	1_4:-37987986	Msa0161890:CDS
CCTGACGGTCGAGTAATTGG+AGG	0.569335	1_4:-37987971	Msa0161890:CDS
TTTGTTGTTGCTAGTTCTTG+TGG	0.587630	1_4:+37990225	None:intergenic
GGCATAAGAACTCGAGAGGG+TGG	0.588092	1_4:-37988016	Msa0161890:CDS
TTCTTGGTTTCAGATTGTAG+TGG	0.588884	1_4:-37986968	Msa0161890:intron
GAAAATATCATACTTGTATG+GGG	0.602829	1_4:+37987918	None:intergenic
AGGTAATGGAGAGGCTGACA+TGG	0.609701	1_4:-37986144	Msa0161890:three_prime_UTR
CTTGGTTTCAGATTGTAGTG+GGG	0.614189	1_4:-37986966	Msa0161890:intron
AAAGTTGCACTAGGTCAACC+TGG	0.616623	1_4:-37989096	Msa0161890:CDS
TGGAGAGGCTGACATGGTAA+CGG	0.618201	1_4:-37986138	Msa0161890:three_prime_UTR
AATCACAGTTTATGCAGGAG+AGG	0.637801	1_4:-37989339	Msa0161890:intron
CCAAGTATCATCATCAGGAG+TGG	0.638537	1_4:+37986711	None:intergenic
GCAATCTCTAAAGTTGCACT+AGG	0.638595	1_4:-37989105	Msa0161890:CDS
TAGTGGCATAAGAACTCGAG+AGG	0.642518	1_4:-37988020	Msa0161890:CDS
CAAAGAAATATTGATGTCAG+GGG	0.647438	1_4:+37986654	None:intergenic
CCAATACTAACATCACCACC+AGG	0.647483	1_4:-37989982	Msa0161890:CDS
TCTGATTTCAGGTAATGGAG+AGG	0.652237	1_4:-37986153	Msa0161890:intron
AAGCCACTGTTTGTTCACGT+TGG	0.653220	1_4:+37986896	None:intergenic
ATGCTACCACCAGTAGAACC+AGG	0.659895	1_4:+37989078	None:intergenic
TTTGCACAGAAGAGTCCAAG+AGG	0.677413	1_4:-37989153	Msa0161890:CDS
GGTCAACCTGGTTCTACTGG+TGG	0.677585	1_4:-37989084	Msa0161890:CDS
GCATAAACTGTGATTACATG+TGG	0.695853	1_4:+37989347	None:intergenic
AGTGGCATAAGAACTCGAGA+GGG	0.696985	1_4:-37988019	Msa0161890:CDS
AGGGTCGTGGTAAATCAACT+GGG	0.700074	1_4:-37989924	Msa0161890:CDS
GTACCAACGTGAACAAACAG+TGG	0.714692	1_4:-37986899	Msa0161890:CDS
TAACGGAATGAAACTAACAG+CGG	0.790419	1_4:-37986121	Msa0161890:three_prime_UTR
GTAGACAAAGTGAATCCTGG+TGG	0.798474	1_4:+37989967	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATAATTATTCATAACAA+TGG	-	chr1_4:37988664-37988683	Msa0161890:intron	10.0%
!!	AAATAATTATTCATAACAAT+GGG	-	chr1_4:37988665-37988684	Msa0161890:intron	10.0%
!!!	TTTTTTCTTTTTCATCTTTT+TGG	-	chr1_4:37986817-37986836	Msa0161890:CDS	15.0%
!!!	ATAACTAGTTTACATTATTA+GGG	+	chr1_4:37986912-37986931	None:intergenic	15.0%
!!!	GATTTATTTTTTACTTGTAA+TGG	-	chr1_4:37986951-37986970	Msa0161890:CDS	15.0%
!!	GTTTGTGAAATAATTAATTT+AGG	-	chr1_4:37987071-37987090	Msa0161890:intron	15.0%
!!!	AGTCAAATCTTTTTTTTTTT+TGG	+	chr1_4:37988766-37988785	None:intergenic	15.0%
!!!	AATACTATATATGCTTTATT+TGG	+	chr1_4:37989489-37989508	None:intergenic	15.0%
!!	AGATAAAAAAAAATAATGCA+AGG	+	chr1_4:37990523-37990542	None:intergenic	15.0%
!!!	TCTTTATATATTGTTTCTCA+TGG	-	chr1_4:37986257-37986276	Msa0161890:intron	20.0%
!!	AAAAAGAAGAAGAAAAACAT+GGG	+	chr1_4:37986725-37986744	None:intergenic	20.0%
!!!	TTTTCATCTTTTTGGTTTAT+AGG	-	chr1_4:37986825-37986844	Msa0161890:CDS	20.0%
!!!	TTTCATCTTTTTGGTTTATA+GGG	-	chr1_4:37986826-37986845	Msa0161890:CDS	20.0%
!!!	CATAACTAGTTTACATTATT+AGG	+	chr1_4:37986913-37986932	None:intergenic	20.0%
!!!	TGAATTTTTAACAGATCTAT+AGG	-	chr1_4:37987301-37987320	Msa0161890:intron	20.0%
!!!	ATATTTTTCCCTTTAATTGT+TGG	-	chr1_4:37987539-37987558	Msa0161890:intron	20.0%
!!	AAATTGAACCAACAATTAAA+GGG	+	chr1_4:37987550-37987569	None:intergenic	20.0%
!!	AAAATTGAACCAACAATTAA+AGG	+	chr1_4:37987551-37987570	None:intergenic	20.0%
!!!	ACATTTTGCAATTTTATACT+AGG	+	chr1_4:37987866-37987885	None:intergenic	20.0%
!!	TAATAACAAATTCTGACAAA+GGG	+	chr1_4:37987902-37987921	None:intergenic	20.0%
!!	AGAAAATATCATACTTGTAT+GGG	+	chr1_4:37988632-37988651	None:intergenic	20.0%
!!	AAGAAAATATCATACTTGTA+TGG	+	chr1_4:37988633-37988652	None:intergenic	20.0%
!!	ACCAACTGATAAATATAAAA+TGG	+	chr1_4:37989170-37989189	None:intergenic	20.0%
!!	AAAATTGGATATAAAGTGAT+AGG	+	chr1_4:37989209-37989228	None:intergenic	20.0%
!!	TTATGTATTTATTTCAGCTA+TGG	+	chr1_4:37989536-37989555	None:intergenic	20.0%
!!!	TGTTTTATAATTCTGATTTC+AGG	-	chr1_4:37990382-37990401	Msa0161890:five_prime_UTR	20.0%
!!	ATTAGAAAGCAGTATTATTA+TGG	-	chr1_4:37990497-37990516	Msa0161890:five_prime_UTR	20.0%
!	AACAGTATTGTAACTACTAT+TGG	-	chr1_4:37986384-37986403	Msa0161890:intron	25.0%
!	TTAACAATCTTCTTGTAACT+TGG	+	chr1_4:37986534-37986553	None:intergenic	25.0%
!!	TACCAAACATTTTCTTCTTT+TGG	-	chr1_4:37986654-37986673	Msa0161890:CDS	25.0%
!	GAAAAAGAAGAAGAAAAACA+TGG	+	chr1_4:37986726-37986745	None:intergenic	25.0%
!!	CTTCTTCTTTTTCTTTACAA+TGG	-	chr1_4:37986733-37986752	Msa0161890:CDS	25.0%
!	TTGTACTCAAAATGTTTGAT+GGG	-	chr1_4:37986774-37986793	Msa0161890:CDS	25.0%
!!!	TTTTTGGTTTATAGGGTTTT+GGG	-	chr1_4:37986833-37986852	Msa0161890:CDS	25.0%
!!!	AATGGCTAAATTTTTCAGTT+AGG	-	chr1_4:37986969-37986988	Msa0161890:intron	25.0%
!!!	ATGGCTAAATTTTTCAGTTA+GGG	-	chr1_4:37986970-37986989	Msa0161890:intron	25.0%
!!	TTTGTGTGTTGTAATTTTGA+AGG	-	chr1_4:37987139-37987158	Msa0161890:intron	25.0%
!	TTTAACAGATCTATAGGATT+TGG	-	chr1_4:37987307-37987326	Msa0161890:intron	25.0%
!!!	ATGTTATTTTGTCACTTTGT+AGG	-	chr1_4:37987347-37987366	Msa0161890:intron	25.0%
!	TATGTTTGTCTCTATTTGAA+GGG	-	chr1_4:37987691-37987710	Msa0161890:intron	25.0%
!	TGAGAACTAATTCTACTAAA+TGG	-	chr1_4:37987776-37987795	Msa0161890:intron	25.0%
!	GAGAACTAATTCTACTAAAT+GGG	-	chr1_4:37987777-37987796	Msa0161890:intron	25.0%
!	CTTAGAGTAATTACTCAATT+TGG	-	chr1_4:37987814-37987833	Msa0161890:intron	25.0%
!	CTAATAACAAATTCTGACAA+AGG	+	chr1_4:37987903-37987922	None:intergenic	25.0%
!!	AAATTGCAGGACTAATATTT+TGG	+	chr1_4:37987964-37987983	None:intergenic	25.0%
!	TCAAGTATTACAACACTAAA+AGG	-	chr1_4:37988145-37988164	Msa0161890:intron	25.0%
!!!	ATTTAGTGCATATTGATTTG+TGG	-	chr1_4:37988236-37988255	Msa0161890:intron	25.0%
!!!	TTGATTTGTGGATCATTTAT+TGG	-	chr1_4:37988248-37988267	Msa0161890:intron	25.0%
!	AGAGTAATAACAATAACAAG+AGG	+	chr1_4:37988383-37988402	None:intergenic	25.0%
!	GAAAATATCATACTTGTATG+GGG	+	chr1_4:37988631-37988650	None:intergenic	25.0%
!!	ATTATTCATAACAATGGGTT+TGG	-	chr1_4:37988670-37988689	Msa0161890:intron	25.0%
!!	GGTATGAGATGAAAATTTTA+TGG	-	chr1_4:37988691-37988710	Msa0161890:intron	25.0%
!!	TGCATAATATGTAGAGTATT+TGG	-	chr1_4:37988901-37988920	Msa0161890:intron	25.0%
!!	GCATAATATGTAGAGTATTT+GGG	-	chr1_4:37988902-37988921	Msa0161890:intron	25.0%
!	TGATTTCATTCATAACACTA+TGG	-	chr1_4:37988928-37988947	Msa0161890:intron	25.0%
!!!	GCCATTTTATATTTATCAGT+TGG	-	chr1_4:37989166-37989185	Msa0161890:CDS	25.0%
!	TAGTGAATAAGCTAGAAAAT+TGG	+	chr1_4:37989224-37989243	None:intergenic	25.0%
!!!	TTTTCTAGCTTATTCACTAT+CGG	-	chr1_4:37989225-37989244	Msa0161890:intron	25.0%
!	GCATATATAGTATTTGATTG+AGG	-	chr1_4:37989495-37989514	Msa0161890:intron	25.0%
!	TAATCTTCTTAACACATTCT+TGG	-	chr1_4:37989562-37989581	Msa0161890:intron	25.0%
!	AACAGTTACAATAAGATGAA+GGG	+	chr1_4:37990366-37990385	None:intergenic	25.0%
!	AAACAGTTACAATAAGATGA+AGG	+	chr1_4:37990367-37990386	None:intergenic	25.0%
!!	ATAATTCTGATTTCAGGTAA+TGG	-	chr1_4:37990388-37990407	Msa0161890:five_prime_UTR	25.0%
!!	AACCAAGAAGAGTATTCAAA+TGG	+	chr1_4:37986143-37986162	None:intergenic	30.0%
	TGAAATGAGAGAAAAGTGAA+AGG	+	chr1_4:37986187-37986206	None:intergenic	30.0%
!!	TTTTCCTTTGTTTCCAGAAA+TGG	+	chr1_4:37986216-37986235	None:intergenic	30.0%
	ATGTTCATGTTCATTTCTTG+AGG	+	chr1_4:37986354-37986373	None:intergenic	30.0%
	ATGAACATGAACATAAGTGT+TGG	-	chr1_4:37986360-37986379	Msa0161890:intron	30.0%
	TTGTTTGGTAAGAAAAAGAG+AGG	-	chr1_4:37986471-37986490	Msa0161890:intron	30.0%
	TCTTCTTGTAACTTGGATTT+AGG	+	chr1_4:37986527-37986546	None:intergenic	30.0%
!	AAATGAGTTTTCCTCCAAAA+AGG	-	chr1_4:37986602-37986621	Msa0161890:intron	30.0%
!	AATGAGTTTTCCTCCAAAAA+GGG	-	chr1_4:37986603-37986622	Msa0161890:intron	30.0%
	CACCAAAAGAAGAAAATGTT+TGG	+	chr1_4:37986659-37986678	None:intergenic	30.0%
	CTTGTACTCAAAATGTTTGA+TGG	-	chr1_4:37986773-37986792	Msa0161890:CDS	30.0%
!!!	CTTTTTGGTTTATAGGGTTT+TGG	-	chr1_4:37986832-37986851	Msa0161890:CDS	30.0%
!!	AATTTTTCAGTTAGGGTTCA+AGG	-	chr1_4:37986977-37986996	Msa0161890:intron	30.0%
	CCAGAAAATAATAGTGTTCA+AGG	+	chr1_4:37987586-37987605	None:intergenic	30.0%
!	CCTTGAACACTATTATTTTC+TGG	-	chr1_4:37987583-37987602	Msa0161890:intron	30.0%
	CTAAGAATAGAGTATGGATA+TGG	-	chr1_4:37987623-37987642	Msa0161890:intron	30.0%
	TACCTACTGTTGACATATAT+GGG	+	chr1_4:37987649-37987668	None:intergenic	30.0%
	CTATGTTTGTCTCTATTTGA+AGG	-	chr1_4:37987690-37987709	Msa0161890:intron	30.0%
	ATATTAGTCCTGCAATTTCA+AGG	-	chr1_4:37987966-37987985	Msa0161890:CDS	30.0%
	AAATTGTTCCTTGAAATTGC+AGG	+	chr1_4:37987977-37987996	None:intergenic	30.0%
	TGCAATTTCAAGGAACAATT+TGG	-	chr1_4:37987976-37987995	Msa0161890:CDS	30.0%
	GCAATTTCAAGGAACAATTT+GGG	-	chr1_4:37987977-37987996	Msa0161890:CDS	30.0%
	AATTGTTCCTTGAAATTGCA+GGG	+	chr1_4:37987976-37987995	None:intergenic	30.0%
	AAATTGTTCCTTGAAATTGC+AGG	+	chr1_4:37987977-37987996	None:intergenic	30.0%
	TGCAATTTCAAGGAACAATT+TGG	-	chr1_4:37987976-37987995	Msa0161890:CDS	30.0%
	AATTCCAAAAAGCAATGCAA+TGG	-	chr1_4:37988077-37988096	Msa0161890:intron	30.0%
	TATTGGATGCACTATTTATC+TGG	-	chr1_4:37988265-37988284	Msa0161890:intron	30.0%
!	TCAATGTCATGCATCATTTT+CGG	-	chr1_4:37988342-37988361	Msa0161890:intron	30.0%
	TCAATGTCTCATTTACTTTC+AGG	-	chr1_4:37988454-37988473	Msa0161890:intron	30.0%
	CAATGTCTCATTTACTTTCA+GGG	-	chr1_4:37988455-37988474	Msa0161890:intron	30.0%
!	TTTGAGATTCTATCTTTGTC+TGG	-	chr1_4:37988482-37988501	Msa0161890:intron	30.0%
!!!	CAAGCTTATAGTGTTTTTTG+AGG	-	chr1_4:37989033-37989052	Msa0161890:intron	30.0%
!!!	AATCGTAAGTTTTGATTCAC+GGG	+	chr1_4:37989393-37989412	None:intergenic	30.0%
!!!	GAATCGTAAGTTTTGATTCA+CGG	+	chr1_4:37989394-37989413	None:intergenic	30.0%
	TGAATATTTGCTTGTGAGAT+AGG	+	chr1_4:37989717-37989736	None:intergenic	30.0%
	ATCTCACAAGCAAATATTCA+TGG	-	chr1_4:37989717-37989736	Msa0161890:intron	30.0%
	AAACATTGATAGATTCTCTC+TGG	+	chr1_4:37989791-37989810	None:intergenic	30.0%
	CTGATGAATATTCAGATCAA+AGG	-	chr1_4:37989865-37989884	Msa0161890:intron	30.0%
	CAAAGAAATATTGATGTCAG+GGG	+	chr1_4:37989895-37989914	None:intergenic	30.0%
	GCAAAGAAATATTGATGTCA+GGG	+	chr1_4:37989896-37989915	None:intergenic	30.0%
	GTTTCATGTCACTAATATGA+CGG	-	chr1_4:37989961-37989980	Msa0161890:CDS	30.0%
	TACTATAAGCTTCTACCTAA+AGG	+	chr1_4:37990046-37990065	None:intergenic	30.0%
	TATAGTATTACTCGTCTTCA+CGG	-	chr1_4:37990059-37990078	Msa0161890:CDS	30.0%
	ACAGTTACAATAAGATGAAG+GGG	+	chr1_4:37990365-37990384	None:intergenic	30.0%
	AAGAATTGAAGCAGTAGTAC+TGG	+	chr1_4:37986108-37986127	None:intergenic	35.0%
	TGCTTCAATTCTTCTCTTAG+TGG	-	chr1_4:37986115-37986134	Msa0161890:three_prime_UTR	35.0%
	CATTTCAAGCTTTCCATTTC+TGG	-	chr1_4:37986200-37986219	Msa0161890:intron	35.0%
!	CTTTCCATTTCTGGAAACAA+AGG	-	chr1_4:37986209-37986228	Msa0161890:intron	35.0%
	AACAACAGCAATGTTTCAGT+TGG	-	chr1_4:37986294-37986313	Msa0161890:intron	35.0%
	ACAACAGCAATGTTTCAGTT+GGG	-	chr1_4:37986295-37986314	Msa0161890:intron	35.0%
!!	TTTGTTGTTGCTAGTTCTTG+TGG	+	chr1_4:37986324-37986343	None:intergenic	35.0%
!	CCATCAGCATCATATTTTCT+TGG	+	chr1_4:37986501-37986520	None:intergenic	35.0%
	CCAAGAAAATATGATGCTGA+TGG	-	chr1_4:37986498-37986517	Msa0161890:intron	35.0%
	TTTGTAGACAAAGTGAATCC+TGG	+	chr1_4:37986585-37986604	None:intergenic	35.0%
	GAAGAAGAAAAACATGGGTA+AGG	+	chr1_4:37986720-37986739	None:intergenic	35.0%
!!	GTGTTGTAATTTTGAAGGTG+AGG	-	chr1_4:37987144-37987163	Msa0161890:intron	35.0%
	GCATAAACTGTGATTACATG+TGG	+	chr1_4:37987202-37987221	None:intergenic	35.0%
	CATGTAATCACAGTTTATGC+AGG	-	chr1_4:37987202-37987221	Msa0161890:intron	35.0%
!!	TTTGTCACTTTGTAGGATGT+TGG	-	chr1_4:37987354-37987373	Msa0161890:intron	35.0%
	GAAAGAATGCATATTCCTCT+TGG	+	chr1_4:37987411-37987430	None:intergenic	35.0%
	ATATGCATTCTTTCTGCCAA+TGG	-	chr1_4:37987417-37987436	Msa0161890:intron	35.0%
!	AACTTTAGAGATTGCTCCAT+TGG	+	chr1_4:37987436-37987455	None:intergenic	35.0%
!!!	TGGTAGCATTTTGACTTATG+AGG	-	chr1_4:37987482-37987501	Msa0161890:intron	35.0%
	CTTCTGCTAAGAATAGAGTA+TGG	-	chr1_4:37987617-37987636	Msa0161890:intron	35.0%
	GTACCTACTGTTGACATATA+TGG	+	chr1_4:37987650-37987669	None:intergenic	35.0%
	TTTGTCTCTATTTGAAGGGT+TGG	-	chr1_4:37987695-37987714	Msa0161890:intron	35.0%
	ATAATAGCCCTGCAATTTCA+AGG	-	chr1_4:37988026-37988045	Msa0161890:CDS	35.0%
!!	CTTACCATTGCATTGCTTTT+TGG	+	chr1_4:37988084-37988103	None:intergenic	35.0%
	CAAAAAGCAATGCAATGGTA+AGG	-	chr1_4:37988082-37988101	Msa0161890:intron	35.0%
!	AAGTAAAGCTTTTCGTCTCT+TGG	-	chr1_4:37988182-37988201	Msa0161890:intron	35.0%
	ATCTTTGTCTGGATCTTACA+CGG	-	chr1_4:37988493-37988512	Msa0161890:intron	35.0%
	ATGATCGAAGTACAACTGTT+TGG	-	chr1_4:37988996-37989015	Msa0161890:intron	35.0%
	GAAGTACAACTGTTTGGTAA+TGG	-	chr1_4:37989002-37989021	Msa0161890:intron	35.0%
	TAACTTATCCATCATCCTCA+CGG	-	chr1_4:37989289-37989308	Msa0161890:intron	35.0%
!!!	AGGGATATTTTTTGACTCGT+GGG	+	chr1_4:37989344-37989363	None:intergenic	35.0%
	TTCTTGGTTTCAGATTGTAG+TGG	-	chr1_4:37989578-37989597	Msa0161890:intron	35.0%
	TCTTGGTTTCAGATTGTAGT+GGG	-	chr1_4:37989579-37989598	Msa0161890:intron	35.0%
	ACAACAACAAGCCTCTTAAA+AGG	-	chr1_4:37989622-37989641	Msa0161890:intron	35.0%
	GGCAAAGAAATATTGATGTC+AGG	+	chr1_4:37989897-37989916	None:intergenic	35.0%
	TTCTTTGCCTGATGAATAGA+TGG	-	chr1_4:37989908-37989927	Msa0161890:CDS	35.0%
	ACCAAAACCATCTATTCATC+AGG	+	chr1_4:37989918-37989937	None:intergenic	35.0%
	TCACTAATATGACGGCTTTA+AGG	-	chr1_4:37989969-37989988	Msa0161890:CDS	35.0%
!	CACTAATATGACGGCTTTAA+GGG	-	chr1_4:37989970-37989989	Msa0161890:CDS	35.0%
!	TGCTTGATGTCATTTCCTTT+AGG	-	chr1_4:37990028-37990047	Msa0161890:CDS	35.0%
	GAATGAGATGATGATCTAGT+TGG	-	chr1_4:37990086-37990105	Msa0161890:CDS	35.0%
	AATGTAAGCAATTGCTTGGA+TGG	+	chr1_4:37990332-37990351	None:intergenic	35.0%
	TAGGAATGTAAGCAATTGCT+TGG	+	chr1_4:37990336-37990355	None:intergenic	35.0%
	TAAGATGAAGGGGAAAATGT+AGG	+	chr1_4:37990355-37990374	None:intergenic	35.0%
	TAACGGAATGAAACTAACAG+CGG	-	chr1_4:37990425-37990444	Msa0161890:five_prime_UTR	35.0%
!!	TTGAAGCAGTAGTACTGGTA+GGG	+	chr1_4:37986103-37986122	None:intergenic	40.0%
!!	ATTGAAGCAGTAGTACTGGT+AGG	+	chr1_4:37986104-37986123	None:intergenic	40.0%
	CGCCATTTGAATACTCTTCT+TGG	-	chr1_4:37986138-37986157	Msa0161890:three_prime_UTR	40.0%
!	AACATTGCTGTTGTTGTGCA+TGG	+	chr1_4:37986289-37986308	None:intergenic	40.0%
!!	AAACTTCCTGGTGTTGTTGT+TGG	+	chr1_4:37986447-37986466	None:intergenic	40.0%
	AACAACAACACCAGGAAGTT+TGG	-	chr1_4:37986446-37986465	Msa0161890:intron	40.0%
	CCAAACAAATCCAAACTTCC+TGG	+	chr1_4:37986459-37986478	None:intergenic	40.0%
!	CCAGGAAGTTTGGATTTGTT+TGG	-	chr1_4:37986456-37986475	Msa0161890:intron	40.0%
!!	GGTGATGTTAGTATTGGTGT+TGG	+	chr1_4:37986561-37986580	None:intergenic	40.0%
!	TGATTTACCACGACCCTTTT+TGG	+	chr1_4:37986619-37986638	None:intergenic	40.0%
	TTTCAGTTAGGGTTCAAGGT+CGG	-	chr1_4:37986981-37987000	Msa0161890:intron	40.0%
	AATCACAGTTTATGCAGGAG+AGG	-	chr1_4:37987207-37987226	Msa0161890:intron	40.0%
!!	GCAATCTCTAAAGTTGCACT+AGG	-	chr1_4:37987441-37987460	Msa0161890:intron	40.0%
!!!	GCATTTTGACTTATGAGGCA+TGG	-	chr1_4:37987487-37987506	Msa0161890:intron	40.0%
	CACTTGAGCTAATCTCATGA+TGG	+	chr1_4:37987754-37987773	None:intergenic	40.0%
!	TAGCTAGTGGACAATGTCTA+TGG	+	chr1_4:37988112-37988131	None:intergenic	40.0%
	TTCGCTATACGCTAGTTGTT+TGG	+	chr1_4:37988969-37988988	None:intergenic	40.0%
	AACTTATCCATCATCCTCAC+GGG	-	chr1_4:37989290-37989309	Msa0161890:intron	40.0%
!!!	CAGGGATATTTTTTGACTCG+TGG	+	chr1_4:37989345-37989364	None:intergenic	40.0%
	ATAATTCGCGTGGCATTTGT+GGG	+	chr1_4:37989430-37989449	None:intergenic	40.0%
	AATAATTCGCGTGGCATTTG+TGG	+	chr1_4:37989431-37989450	None:intergenic	40.0%
	CTTGGTTTCAGATTGTAGTG+GGG	-	chr1_4:37989580-37989599	Msa0161890:intron	40.0%
!	CGTTGGTACTTCCTTTTAAG+AGG	+	chr1_4:37989636-37989655	None:intergenic	40.0%
!	ATTTCTGGACCAGTTGAAGT+TGG	+	chr1_4:37989678-37989697	None:intergenic	40.0%
	GGAAGGTGATGAGACATAAT+AGG	+	chr1_4:37989759-37989778	None:intergenic	40.0%
	GATTCTCTCTGGATTTGATC+AGG	+	chr1_4:37989780-37989799	None:intergenic	40.0%
	CTGTTCCAAGTATCATCATC+AGG	+	chr1_4:37989843-37989862	None:intergenic	40.0%
!	GCCTGATGAATAGATGGTTT+TGG	-	chr1_4:37989914-37989933	Msa0161890:CDS	40.0%
	GACATGAAACGTCATGTCAT+AGG	+	chr1_4:37989951-37989970	None:intergenic	40.0%
!!	TAATATGACGGCTTTAAGGG+TGG	-	chr1_4:37989973-37989992	Msa0161890:CDS	40.0%
!!	TGATCTAGTTGGTGTCAGTT+CGG	-	chr1_4:37990097-37990116	Msa0161890:CDS	40.0%
!!	TCTGATTTCAGGTAATGGAG+AGG	-	chr1_4:37990393-37990412	Msa0161890:five_prime_UTR	40.0%
	CGGAATTTGTGATGACAACT+AGG	-	chr1_4:37990445-37990464	Msa0161890:five_prime_UTR	40.0%
!	GTTGTTGTTGGTGTGACTGT+TGG	+	chr1_4:37986435-37986454	None:intergenic	45.0%
!	CCTGGTGGTGATGTTAGTAT+TGG	+	chr1_4:37986567-37986586	None:intergenic	45.0%
	CCAATACTAACATCACCACC+AGG	-	chr1_4:37986564-37986583	Msa0161890:intron	45.0%
	GTAGACAAAGTGAATCCTGG+TGG	+	chr1_4:37986582-37986601	None:intergenic	45.0%
!	TTTTCCTCCAAAAAGGGTCG+TGG	-	chr1_4:37986609-37986628	Msa0161890:intron	45.0%
!	TTTACCACGACCCTTTTTGG+AGG	+	chr1_4:37986616-37986635	None:intergenic	45.0%
	AAGGGTCGTGGTAAATCAAC+TGG	-	chr1_4:37986621-37986640	Msa0161890:intron	45.0%
	AGGGTCGTGGTAAATCAACT+GGG	-	chr1_4:37986622-37986641	Msa0161890:intron	45.0%
!	GTCACTTTGTAGGATGTTGG+TGG	-	chr1_4:37987357-37987376	Msa0161890:intron	45.0%
	TTTGCACAGAAGAGTCCAAG+AGG	-	chr1_4:37987393-37987412	Msa0161890:intron	45.0%
	AAAGTTGCACTAGGTCAACC+TGG	-	chr1_4:37987450-37987469	Msa0161890:intron	45.0%
	GGCCCATATATGTCAACAGT+AGG	-	chr1_4:37987644-37987663	Msa0161890:intron	45.0%
	GTGACAACTTCTCTAGCTAG+TGG	+	chr1_4:37988125-37988144	None:intergenic	45.0%
	TACACGGCTTCTGACAATAG+TGG	-	chr1_4:37988509-37988528	Msa0161890:intron	45.0%
	TAGTGGCATAAGAACTCGAG+AGG	-	chr1_4:37988526-37988545	Msa0161890:intron	45.0%
	AGTGGCATAAGAACTCGAGA+GGG	-	chr1_4:37988527-37988546	Msa0161890:intron	45.0%
!	CACTATGGCTCTGTTTGTCA+AGG	-	chr1_4:37988943-37988962	Msa0161890:intron	45.0%
	AATTTGACCCGTGAGGATGA+TGG	+	chr1_4:37989300-37989319	None:intergenic	45.0%
	GGAACAAAATTTGACCCGTG+AGG	+	chr1_4:37989307-37989326	None:intergenic	45.0%
	AGCTTGAGCAATAATTCGCG+TGG	+	chr1_4:37989440-37989459	None:intergenic	45.0%
	GTACCAACGTGAACAAACAG+TGG	-	chr1_4:37989647-37989666	Msa0161890:intron	45.0%
	AAGCCACTGTTTGTTCACGT+TGG	+	chr1_4:37989653-37989672	None:intergenic	45.0%
	CTCTCTGGATTTGATCAGGA+AGG	+	chr1_4:37989776-37989795	None:intergenic	45.0%
	CCAAGTATCATCATCAGGAG+TGG	+	chr1_4:37989838-37989857	None:intergenic	45.0%
!	CCACTCCTGATGATGATACT+TGG	-	chr1_4:37989835-37989854	Msa0161890:intron	45.0%
!!	CAGTAGTACTGGTAGGGAAG+AGG	+	chr1_4:37986097-37986116	None:intergenic	50.0%
	GTCACACCAACAACAACACC+AGG	-	chr1_4:37986438-37986457	Msa0161890:intron	50.0%
	AAATCCACAGCAGCTGTGCT+TGG	+	chr1_4:37987175-37987194	None:intergenic	50.0%
!!	CTAGGTCAACCTGGTTCTAC+TGG	-	chr1_4:37987459-37987478	Msa0161890:intron	50.0%
	ATGCTACCACCAGTAGAACC+AGG	+	chr1_4:37987471-37987490	None:intergenic	50.0%
	ATCGTCTGTCTGTCTGTCTC+AGG	-	chr1_4:37988319-37988338	Msa0161890:intron	50.0%
	GGATTGAGTGTCTCACTAGC+TGG	-	chr1_4:37988551-37988570	Msa0161890:intron	50.0%
!!	GTAATTGGAGGTGCTGTTGC+TGG	-	chr1_4:37988587-37988606	Msa0161890:intron	50.0%
	GCTGGTGTTCTTATAGCTGC+TGG	-	chr1_4:37988605-37988624	Msa0161890:intron	50.0%
!!	AAGCGAGGTGTGGTTTTGCA+GGG	+	chr1_4:37989363-37989382	None:intergenic	50.0%
	GTGGCTTCTCCAACTTCAAC+TGG	-	chr1_4:37989666-37989685	Msa0161890:intron	50.0%
!	CGTGCTGCTGTGACTATTTC+TGG	+	chr1_4:37989693-37989712	None:intergenic	50.0%
	CATCAAGCATTAGTCCGACG+TGG	+	chr1_4:37990017-37990036	None:intergenic	50.0%
!!	GGATGGAGAAGTGTCTCATG+TGG	+	chr1_4:37990315-37990334	None:intergenic	50.0%
!!	AGGTAATGGAGAGGCTGACA+TGG	-	chr1_4:37990402-37990421	Msa0161890:five_prime_UTR	50.0%
	TGGAGAGGCTGACATGGTAA+CGG	-	chr1_4:37990408-37990427	Msa0161890:five_prime_UTR	50.0%
	GTTTCCAAGCACAGCTGCTG+TGG	-	chr1_4:37987168-37987187	Msa0161890:intron	55.0%
!!	GGTCAACCTGGTTCTACTGG+TGG	-	chr1_4:37987462-37987481	Msa0161890:intron	55.0%
	GGCATAAGAACTCGAGAGGG+TGG	-	chr1_4:37988530-37988549	Msa0161890:intron	55.0%
	GTCTCACTAGCTGGTCCTGA+CGG	-	chr1_4:37988560-37988579	Msa0161890:intron	55.0%
	GGTCCTGACGGTCGAGTAAT+TGG	-	chr1_4:37988572-37988591	Msa0161890:intron	55.0%
	CCTCCAATTACTCGACCGTC+AGG	+	chr1_4:37988578-37988597	None:intergenic	55.0%
	CCTGACGGTCGAGTAATTGG+AGG	-	chr1_4:37988575-37988594	Msa0161890:intron	55.0%
	TCGTGGGTCGTTGCTTACTC+GGG	+	chr1_4:37989328-37989347	None:intergenic	55.0%
	CTCGTGGGTCGTTGCTTACT+CGG	+	chr1_4:37989329-37989348	None:intergenic	55.0%
!!	CAAGCGAGGTGTGGTTTTGC+AGG	+	chr1_4:37989364-37989383	None:intergenic	55.0%
	GTGGGGAGCTTCGTGTCAAA+TGG	-	chr1_4:37989597-37989616	Msa0161890:intron	55.0%
	GTGTCTCGCATAGTCCACGT+CGG	-	chr1_4:37990000-37990019	Msa0161890:CDS	55.0%
	GTGTCTCATGTGGTCTGCAG+CGG	+	chr1_4:37990305-37990324	None:intergenic	55.0%
	TTCACGGGTCGTGACAAGCG+AGG	+	chr1_4:37989378-37989397	None:intergenic	60.0%
	GGGTCGTGACAAGCGAGGTG+TGG	+	chr1_4:37989373-37989392	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	37986016	37990552	37986016	ID=Msa0161890;Name=Msa0161890
chr1_4	mRNA	37986016	37990552	37986016	ID=Msa0161890-mRNA-1;Parent=Msa0161890;Name=Msa0161890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=260\|1\|1\|1\|0.8\|0.66\|6\|158\|366
chr1_4	exon	37986016	37986164	37986016	ID=Msa0161890-mRNA-1:exon:11152;Parent=Msa0161890-mRNA-1
chr1_4	exon	37986633	37986977	37986633	ID=Msa0161890-mRNA-1:exon:11151;Parent=Msa0161890-mRNA-1
chr1_4	exon	37987931	37988092	37987931	ID=Msa0161890-mRNA-1:exon:11150;Parent=Msa0161890-mRNA-1
chr1_4	exon	37989065	37989199	37989065	ID=Msa0161890-mRNA-1:exon:11149;Parent=Msa0161890-mRNA-1
chr1_4	exon	37989340	37989407	37989340	ID=Msa0161890-mRNA-1:exon:11148;Parent=Msa0161890-mRNA-1
chr1_4	exon	37989893	37990552	37989893	ID=Msa0161890-mRNA-1:exon:11147;Parent=Msa0161890-mRNA-1
chr1_4	five_prime_UTR	37990293	37990552	37990293	ID=Msa0161890-mRNA-1:five_prime_utr;Parent=Msa0161890-mRNA-1
chr1_4	CDS	37989893	37990292	37989893	ID=Msa0161890-mRNA-1:cds;Parent=Msa0161890-mRNA-1
chr1_4	CDS	37989340	37989407	37989340	ID=Msa0161890-mRNA-1:cds;Parent=Msa0161890-mRNA-1
chr1_4	CDS	37989065	37989199	37989065	ID=Msa0161890-mRNA-1:cds;Parent=Msa0161890-mRNA-1
chr1_4	CDS	37987931	37988092	37987931	ID=Msa0161890-mRNA-1:cds;Parent=Msa0161890-mRNA-1
chr1_4	CDS	37986642	37986977	37986642	ID=Msa0161890-mRNA-1:cds;Parent=Msa0161890-mRNA-1
chr1_4	three_prime_UTR	37986633	37986641	37986633	ID=Msa0161890-mRNA-1:three_prime_utr;Parent=Msa0161890-mRNA-1
chr1_4	three_prime_UTR	37986016	37986164	37986016	ID=Msa0161890-mRNA-1:three_prime_utr;Parent=Msa0161890-mRNA-1

Gene Sequence

>Msa0161890

ATGGAACAAACCATGCACAACAACAGCAATGTTTCAGTTGGGTCACCACAAGAACTAGCAACAACAAACACATTACCTCAAGAAATGAACATGAACATAAGTGTTGGAAACAGTATTGTAACTACTATTGGAACATCAATAGTTGCTTTAGAAGCACCAACAGTCACACCAACAACAACACCAGGAAGTTTGGATTTGTTTGGTAAGAAAAAGAGAGGAAGACCAAGAAAATATGATGCTGATGGAAACCTAAATCCAAGTTACAAGAAGATTGTTAAAACACCAACACCAATACTAACATCACCACCAGGATTCACTTTGTCTACAAATGAGTTTTCCTCCAAAAAGGGTCGTGGTAAATCAACTGGGTTTGTTAATTACCAAACATTTTCTTCTTTTGGTGAGGTGTTTCCAAGCACAGCTGCTGTGGATTTTACACCACATGTAATCACAGTTTATGCAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGGAATATGCATTCTTTCTGCCAATGGAGCAATCTCTAAAGTTGCACTAGGTCAACCTGGTTCTACTGGTGGTAGCATTTTGACTTATGAGGGTCGATTTGAGATTCTATCTTTGTCTGGATCTTACACGGCTTCTGACAATAGTGGCATAAGAACTCGAGAGGGTGGATTGAGTGTCTCACTAGCTGGTCCTGACGGTCGAGTAATTGGAGGTGCTGTTGCTGGTGTTCTTATAGCTGCTGGCCCCATACAAATTGTAGTGGGGAGCTTCGTGTCAAATGGTAACAACAACAAGCCTCTTAAAAGGAAGTACCAACGTGAACAAACAGTGGCTTCTCCAACTTCAACTGGTCCAGAAATAGTCACAGCAGCACGACCTATCTCACAAGCAAATATTCATGGTGAAAACTTTATGATACCTATTATGTCTCATCACCTTCCTGATCAAATCCAGAGAGAATCTATCAATGTTTCAAGTGATAAACTGAACTTAGATGCCACTCCTGATGATGATACTTGGAACAGTTCTGATGAATATTCAGATCAAAGGACATCCCCTGACATCAATATTTCTTTGCCTGATGAATAG

Protein sequence

>Msa0161890

MEQTMHNNSNVSVGSPQELATTNTLPQEMNMNISVGNSIVTTIGTSIVALEAPTVTPTTTPGSLDLFGKKKRGRPRKYDADGNLNPSYKKIVKTPTPILTSPPGFTLSTNEFSSKKGRGKSTGFVNYQTFSSFGEVFPSTAAVDFTPHVITVYAGEDVGGKILSFAQKSPRGICILSANGAISKVALGQPGSTGGSILTYEGRFEILSLSGSYTASDNSGIRTREGGLSVSLAGPDGRVIGGAVAGVLIAAGPIQIVVGSFVSNGNNNKPLKRKYQREQTVASPTSTGPEIVTAARPISQANIHGENFMIPIMSHHLPDQIQRESINVSSDKLNLDATPDDDTWNSSDEYSDQRTSPDINISLPDE*