Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120800 | XP_003590392.1 | 99.414 | 512 | 2 | 1 | 1 | 511 | 1 | 512 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120800 | sp|Q9LSA9|PUMPK_ARATH | 53.906 | 256 | 113 | 2 | 254 | 507 | 78 | 330 | 9.13e-90 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120800 | A7UQU8 | 99.414 | 512 | 2 | 1 | 1 | 511 | 1 | 512 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0120800 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072530 | Msa0120800 | 0.906546 | 1.322297e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120800 | MtrunA17_Chr1g0179531 | 99.414 | 512 | 2 | 1 | 1 | 511 | 1 | 512 | 0.0 | 1061 |
| Msa0120800 | MtrunA17_Chr8g0384081 | 50.758 | 264 | 120 | 3 | 251 | 507 | 56 | 316 | 1.97e-87 | 271 |
| Msa0120800 | MtrunA17_Chr2g0283871 | 35.644 | 101 | 59 | 3 | 132 | 227 | 23 | 122 | 1.16e-15 | 78.2 |
| Msa0120800 | MtrunA17_Chr4g0041151 | 36.275 | 102 | 58 | 3 | 132 | 227 | 31 | 131 | 1.29e-15 | 77.8 |
| Msa0120800 | MtrunA17_Chr1g0164461 | 41.346 | 104 | 51 | 4 | 120 | 220 | 27 | 123 | 1.60e-15 | 75.1 |
| Msa0120800 | MtrunA17_Chr6g0485241 | 37.255 | 102 | 61 | 2 | 130 | 229 | 128 | 228 | 2.26e-15 | 77.8 |
| Msa0120800 | MtrunA17_Chr3g0082261 | 41.346 | 104 | 51 | 4 | 120 | 220 | 27 | 123 | 1.74e-14 | 74.7 |
| Msa0120800 | MtrunA17_Chr5g0402321 | 34.000 | 100 | 60 | 2 | 132 | 225 | 22 | 121 | 1.46e-13 | 70.1 |
| Msa0120800 | MtrunA17_Chr4g0066271 | 38.000 | 100 | 58 | 2 | 132 | 227 | 117 | 216 | 3.54e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120800 | AT3G10030.1 | 56.909 | 550 | 183 | 7 | 1 | 508 | 1 | 538 | 0.0 | 591 |
| Msa0120800 | AT3G10030.2 | 55.086 | 521 | 180 | 7 | 1 | 479 | 1 | 509 | 0.0 | 543 |
| Msa0120800 | AT3G18680.1 | 53.906 | 256 | 113 | 2 | 254 | 507 | 78 | 330 | 9.28e-91 | 281 |
| Msa0120800 | AT3G18680.2 | 47.751 | 289 | 113 | 3 | 254 | 507 | 78 | 363 | 1.57e-83 | 263 |
| Msa0120800 | AT3G54390.2 | 36.441 | 118 | 65 | 3 | 126 | 241 | 48 | 157 | 3.46e-17 | 82.8 |
| Msa0120800 | AT3G54390.1 | 36.441 | 118 | 65 | 3 | 126 | 241 | 32 | 141 | 3.47e-17 | 82.8 |
| Msa0120800 | AT3G58630.1 | 30.872 | 149 | 78 | 3 | 132 | 255 | 26 | 174 | 2.73e-16 | 80.5 |
| Msa0120800 | AT3G58630.2 | 30.872 | 149 | 78 | 3 | 132 | 255 | 26 | 174 | 3.10e-16 | 80.1 |
| Msa0120800 | AT3G14180.1 | 37.607 | 117 | 66 | 4 | 111 | 223 | 63 | 176 | 6.12e-16 | 80.5 |
| Msa0120800 | AT3G24490.1 | 31.667 | 120 | 73 | 3 | 104 | 220 | 64 | 177 | 1.36e-12 | 69.3 |
| Msa0120800 | AT2G44730.1 | 38.043 | 92 | 53 | 2 | 132 | 219 | 64 | 155 | 2.32e-12 | 68.9 |
Find 175 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATACGAAAACGGAATT+TGG | 0.135590 | 1_3:+45994089 | None:intergenic |
| CCCAGGAGGACATGTTTATT+TGG | 0.142511 | 1_3:+45998312 | None:intergenic |
| AAAGGAAGAGTTGTTATATT+TGG | 0.225653 | 1_3:-45995020 | Msa0120800:CDS |
| TTGACAATGCTTTGGACTTC+AGG | 0.272821 | 1_3:+45996529 | None:intergenic |
| CAACAAATTCAATTATTGTT+AGG | 0.282934 | 1_3:-45994170 | Msa0120800:three_prime_UTR |
| CGACATATCTGCTGCTCTTC+GGG | 0.289993 | 1_3:-45994958 | Msa0120800:CDS |
| ATATTTGGTGGCATTGGTTT+TGG | 0.302206 | 1_3:-45995005 | Msa0120800:CDS |
| CCAGGAGGACATGTTTATTT+GGG | 0.322318 | 1_3:+45998313 | None:intergenic |
| CTTTCGAGCACATATCCTTC+AGG | 0.327576 | 1_3:-45994722 | Msa0120800:CDS |
| GAACAACTCTCCGCCATCTA+AGG | 0.331588 | 1_3:+45996505 | None:intergenic |
| CGGTAAAATGCGAACAGATA+TGG | 0.336097 | 1_3:-45993944 | Msa0120800:three_prime_UTR |
| GGGTTTGAAGGAACGGCGTT+AGG | 0.354168 | 1_3:+45998164 | None:intergenic |
| TGCGAGGAAAATGCCATTCC+TGG | 0.369901 | 1_3:-45994648 | Msa0120800:intron |
| CCGACATATCTGCTGCTCTT+CGG | 0.371066 | 1_3:-45994959 | Msa0120800:CDS |
| TATTGTTGGGAATTCGCTTC+CGG | 0.371702 | 1_3:-45997460 | Msa0120800:CDS |
| GTGGCAAGTATCCAACTTAA+TGG | 0.380113 | 1_3:+45994138 | None:intergenic |
| CGAAGGTTTGGTGGAGGTGG+TGG | 0.380551 | 1_3:+45998045 | None:intergenic |
| TCAATCAACTTTAGAGAAGA+TGG | 0.381962 | 1_3:-45995129 | Msa0120800:CDS |
| AACCTTAGGGTCAATATTGC+AGG | 0.385341 | 1_3:+45996446 | None:intergenic |
| GTCTAGAGGTGTCACCTCTA+TGG | 0.386263 | 1_3:-45994691 | Msa0120800:CDS |
| TCTAAGGTTTGACAATGCTT+TGG | 0.391295 | 1_3:+45996521 | None:intergenic |
| TTTCTGCTAGTCATTGGCCT+TGG | 0.394011 | 1_3:-45997500 | Msa0120800:CDS |
| AGGTTTGGTGGAGGTGGTGG+TGG | 0.399667 | 1_3:+45998048 | None:intergenic |
| TAGCAGTAGCCTTCCTTTGT+CGG | 0.402109 | 1_3:-45993964 | Msa0120800:three_prime_UTR |
| GGAGGTGGTGGTGGTGAGAG+TGG | 0.404152 | 1_3:+45998057 | None:intergenic |
| AGCATACGAAAACGGAATTT+GGG | 0.404272 | 1_3:+45994090 | None:intergenic |
| GTTGCATTTCTGCTAGTCAT+TGG | 0.405063 | 1_3:-45997506 | Msa0120800:CDS |
| GGCACACTTATTGACCAAAC+TGG | 0.406605 | 1_3:-45994220 | Msa0120800:CDS |
| CCCAAATAAACATGTCCTCC+TGG | 0.411154 | 1_3:-45998313 | Msa0120800:five_prime_UTR |
| GGTGGTGAGGTGCGAAGGTT+TGG | 0.411349 | 1_3:+45998033 | None:intergenic |
| GTTTACTTGACCTCCACTGC+TGG | 0.412531 | 1_3:+45996554 | None:intergenic |
| GTTAGCTTATTGCTCCAGTT+TGG | 0.414252 | 1_3:+45994206 | None:intergenic |
| AAGCATTGTCAAACCTTAGA+TGG | 0.420124 | 1_3:-45996518 | Msa0120800:CDS |
| GGAAATTAGAACCATTAAGT+TGG | 0.422247 | 1_3:-45994149 | Msa0120800:three_prime_UTR |
| ATTAGTGGATCGGCACTTAC+CGG | 0.426477 | 1_3:-45996477 | Msa0120800:CDS |
| CTTCAGGTAGCAATTGTTGT+TGG | 0.428109 | 1_3:-45996140 | Msa0120800:intron |
| AAGCAGATGGAACATATTGT+TGG | 0.431908 | 1_3:-45997474 | Msa0120800:CDS |
| GGTGAGGTGCGAAGGTTTGG+TGG | 0.432109 | 1_3:+45998036 | None:intergenic |
| GTGCGAAGGTTTGGTGGAGG+TGG | 0.433564 | 1_3:+45998042 | None:intergenic |
| GGAAGAGTTGTTATATTTGG+TGG | 0.436188 | 1_3:-45995017 | Msa0120800:CDS |
| GGTGGTGAGAGTGGTGGTTG+TGG | 0.437072 | 1_3:+45998012 | None:intergenic |
| CTCAAAGGTACCAACGTAGA+TGG | 0.437085 | 1_3:-45994780 | Msa0120800:CDS |
| CGTTTGCTGAACCGTACAAT+AGG | 0.437374 | 1_3:-45995067 | Msa0120800:CDS |
| GTTGTTATATTTGGTGGCAT+TGG | 0.439242 | 1_3:-45995011 | Msa0120800:CDS |
| AGCAGATGGAACATATTGTT+GGG | 0.444247 | 1_3:-45997473 | Msa0120800:CDS |
| GACGGAGGTGGTGATGTGTT+TGG | 0.447470 | 1_3:+45997965 | None:intergenic |
| CAACAACAAACGGTCAAAAC+CGG | 0.450346 | 1_3:-45997808 | Msa0120800:CDS |
| CTGCTCTGCAGTTAATGCTC+AGG | 0.451851 | 1_3:-45994808 | Msa0120800:intron |
| AGGTTGATAATTTGAAGAAA+AGG | 0.452877 | 1_3:-45997560 | Msa0120800:CDS |
| GATGTACTGCATACCAAGTT+GGG | 0.454334 | 1_3:-45996064 | Msa0120800:intron |
| GTCGTCGTCGGCGACGGCGG+CGG | 0.456922 | 1_3:+45997941 | None:intergenic |
| CTTCTCCGCCGTTAATCTCA+TGG | 0.457893 | 1_3:-45998132 | Msa0120800:exon |
| TTTATCATCATCAGCAAACT+TGG | 0.459547 | 1_3:+45997437 | None:intergenic |
| CATCTACGTTGGTACCTTTG+AGG | 0.460201 | 1_3:+45994781 | None:intergenic |
| CCAAATAAACATGTCCTCCT+GGG | 0.465076 | 1_3:-45998312 | Msa0120800:five_prime_UTR |
| GAGAGACATAGAATGAATAA+TGG | 0.466819 | 1_3:-45997528 | Msa0120800:CDS |
| TGTGATGCAACGACGTCGTA+TGG | 0.469790 | 1_3:-45997834 | Msa0120800:CDS |
| TCCTTTCTCAAGATGCCTGA+TGG | 0.470108 | 1_3:+45995037 | None:intergenic |
| GTCGGCGACGGCGGCGGAGA+CGG | 0.470366 | 1_3:+45997947 | None:intergenic |
| ACAATAGGCAACGGGCCATC+AGG | 0.470864 | 1_3:-45995052 | Msa0120800:CDS |
| GTTGTGGTGGTGAGGTGCGA+AGG | 0.471059 | 1_3:+45998028 | None:intergenic |
| ACGGCGGAGAAGACGGTGAA+AGG | 0.471614 | 1_3:+45998143 | None:intergenic |
| TTGGCCTTGGTTTAAGCAGA+TGG | 0.477301 | 1_3:-45997487 | Msa0120800:CDS |
| CGGCGGAGAAGACGGTGAAA+GGG | 0.479455 | 1_3:+45998144 | None:intergenic |
| GTTGCAATGGCTTCCCGTCT+TGG | 0.480588 | 1_3:-45996254 | Msa0120800:CDS |
| GTCTCCGTCGTCGTCGGCGA+CGG | 0.482206 | 1_3:+45997935 | None:intergenic |
| ATAGAAAGGATCGAGAAGAA+TGG | 0.483589 | 1_3:-45997740 | Msa0120800:CDS |
| GGAATCTAAGAGGAAGAGAC+TGG | 0.484398 | 1_3:-45997653 | Msa0120800:CDS |
| CCACCGTTACCGCTAGAAAC+CGG | 0.484968 | 1_3:+45997789 | None:intergenic |
| GAGATTAACGGCGGAGAAGA+CGG | 0.487166 | 1_3:+45998136 | None:intergenic |
| TCTATACTCTGCTCCTACTC+CGG | 0.487389 | 1_3:+45997758 | None:intergenic |
| CAGGTAGCAATTGTTGTTGG+AGG | 0.488440 | 1_3:-45996137 | Msa0120800:CDS |
| ATTTCTTCTGTGGTGATGCA+TGG | 0.491743 | 1_3:-45996109 | Msa0120800:CDS |
| CTGGGAAGAAGTAGCTTCAA+TGG | 0.493185 | 1_3:-45997634 | Msa0120800:CDS |
| TGGAGAAGTGGTGGTGAGAG+TGG | 0.496490 | 1_3:+45998003 | None:intergenic |
| GGTGAGAGTGGTGGTTGTGG+TGG | 0.497086 | 1_3:+45998015 | None:intergenic |
| TGCTGCTCTTCGGGCTTCAG+AGG | 0.502112 | 1_3:-45994949 | Msa0120800:CDS |
| GATGCATGGGTAACTGCAAC+AGG | 0.506168 | 1_3:-45996095 | Msa0120800:CDS |
| TTTCGAGCACATATCCTTCA+GGG | 0.508101 | 1_3:-45994721 | Msa0120800:CDS |
| GACGGCGGCGGAGACGGAGG+TGG | 0.510775 | 1_3:+45997953 | None:intergenic |
| TAAAGTTGATTGAAGCAGTA+AGG | 0.510796 | 1_3:+45995139 | None:intergenic |
| TCTTAAATTTGTCAGCATGA+TGG | 0.513943 | 1_3:-45995177 | Msa0120800:intron |
| ATAGTATTGCTTACCAGGAA+TGG | 0.515872 | 1_3:+45994635 | None:intergenic |
| CGTTAGGGAAAGAGAGAAGA+AGG | 0.517486 | 1_3:+45998180 | None:intergenic |
| GTGATTAATCTTACCCAACT+TGG | 0.518834 | 1_3:+45996051 | None:intergenic |
| GGTTTGAAGGAACGGCGTTA+GGG | 0.520358 | 1_3:+45998165 | None:intergenic |
| ACAACATAAGCATACGAAAA+CGG | 0.521147 | 1_3:+45994082 | None:intergenic |
| GCCATCAGGCATCTTGAGAA+AGG | 0.521422 | 1_3:-45995038 | Msa0120800:CDS |
| GGTGGTGGTGGTGAGAGTGG+TGG | 0.521909 | 1_3:+45998060 | None:intergenic |
| CTGTACCTCCACACCAAGAC+GGG | 0.522588 | 1_3:+45996241 | None:intergenic |
| GCAAGAAGCCATGAGATTAA+CGG | 0.522956 | 1_3:+45998124 | None:intergenic |
| ATGGCCCGTTGCCTATTGTA+CGG | 0.527865 | 1_3:+45995056 | None:intergenic |
| TTACCACGTAGGAGAGATAG+AGG | 0.529914 | 1_3:+45998285 | None:intergenic |
| GGCTTCCCGTCTTGGTGTGG+AGG | 0.530692 | 1_3:-45996246 | Msa0120800:intron |
| TCCGTCGTCGTCGGCGACGG+CGG | 0.535708 | 1_3:+45997938 | None:intergenic |
| AGATGTACTGCATACCAAGT+TGG | 0.537226 | 1_3:-45996065 | Msa0120800:CDS |
| AACATTTCAAAAGCTTTGTG+TGG | 0.537883 | 1_3:-45994253 | Msa0120800:CDS |
| TCATCATCAGCAAACTTGGC+CGG | 0.538573 | 1_3:+45997441 | None:intergenic |
| AATATTGCAGGTATCGGATC+CGG | 0.539941 | 1_3:+45996458 | None:intergenic |
| TACCTGCAATATTGACCCTA+AGG | 0.540236 | 1_3:-45996448 | Msa0120800:intron |
| CTACCAGCGTCATCGTCGAA+TGG | 0.542605 | 1_3:+45997891 | None:intergenic |
| CAATCAACTTTAGAGAAGAT+GGG | 0.544338 | 1_3:-45995128 | Msa0120800:CDS |
| AAGACGGTGAAAGGGTTTGA+AGG | 0.545461 | 1_3:+45998152 | None:intergenic |
| TGCCTAGGTGAAATTGAAGC+AGG | 0.547449 | 1_3:+45997405 | None:intergenic |
| AGGGTCAATATTGCAGGTAT+CGG | 0.548147 | 1_3:+45996452 | None:intergenic |
| TTTCTTCTGTGGTGATGCAT+GGG | 0.549335 | 1_3:-45996108 | Msa0120800:CDS |
| AGGTGGTGATGTGTTTGGAT+TGG | 0.554894 | 1_3:+45997970 | None:intergenic |
| GTTTCTAGCGGTAACGGTGG+AGG | 0.557012 | 1_3:-45997786 | Msa0120800:CDS |
| TTTCACCTAGGCAATCTAAG+AGG | 0.557596 | 1_3:-45997395 | Msa0120800:intron |
| GAGTGGTGGTTGTGGTGGTG+AGG | 0.558400 | 1_3:+45998020 | None:intergenic |
| CTGAATCGAGGGAATCTAAG+AGG | 0.560567 | 1_3:-45997663 | Msa0120800:CDS |
| TGAACCGTACAATAGGCAAC+GGG | 0.562366 | 1_3:-45995060 | Msa0120800:CDS |
| GATATGTCGGTTGAGAAAAG+TGG | 0.562539 | 1_3:+45994972 | None:intergenic |
| GGCGACGGCGGCGGAGACGG+AGG | 0.562987 | 1_3:+45997950 | None:intergenic |
| AGTTTCAAATGAAGTTGCAA+TGG | 0.565412 | 1_3:-45996267 | Msa0120800:CDS |
| GCTCTACAATTTCCTAGTGG+TGG | 0.567609 | 1_3:+45994119 | None:intergenic |
| AATGCTCAGGCTGTCCTCAA+AGG | 0.568956 | 1_3:-45994795 | Msa0120800:CDS |
| AAACCGGTTTCTAGCGGTAA+CGG | 0.569854 | 1_3:-45997792 | Msa0120800:CDS |
| GCTGCTCTTCGGGCTTCAGA+GGG | 0.570088 | 1_3:-45994948 | Msa0120800:intron |
| CGTATGGATTCAACAACAAA+CGG | 0.572327 | 1_3:-45997818 | Msa0120800:CDS |
| AGTAGGAGCAGAGTATAGAA+AGG | 0.577390 | 1_3:-45997754 | Msa0120800:CDS |
| ACAAACTTCAGTTTCAATGC+AGG | 0.580585 | 1_3:-45995090 | Msa0120800:CDS |
| GGTGGAGGAAGCGCCGGAGT+AGG | 0.580586 | 1_3:-45997771 | Msa0120800:CDS |
| GGTGAAAGGGTTTGAAGGAA+CGG | 0.581304 | 1_3:+45998157 | None:intergenic |
| GGTGTCGTCTCCGTCGTCGT+CGG | 0.581790 | 1_3:+45997929 | None:intergenic |
| AACTTCATTTGAAACTAACA+TGG | 0.586306 | 1_3:+45996274 | None:intergenic |
| GTCATATACGCCATCTACGT+TGG | 0.587713 | 1_3:+45994770 | None:intergenic |
| GGAGGTCGTAATTTCTTCTG+TGG | 0.589587 | 1_3:-45996119 | Msa0120800:CDS |
| TTAAACCTCTTAGATTGCCT+AGG | 0.591137 | 1_3:+45997390 | None:intergenic |
| CAAATAAACATGTCCTCCTG+GGG | 0.591141 | 1_3:-45998311 | Msa0120800:five_prime_UTR |
| GCCGCCGTCGCCGACGACGA+CGG | 0.592641 | 1_3:-45997939 | Msa0120800:CDS |
| GTGGCTACGTCCAGCAGTGG+AGG | 0.596879 | 1_3:-45996564 | Msa0120800:CDS |
| AAATTTACGCAGCTGAATCG+AGG | 0.599706 | 1_3:-45997675 | Msa0120800:CDS |
| AATCCATTCGACGATGACGC+TGG | 0.603457 | 1_3:-45997894 | Msa0120800:CDS |
| GGTAACGGTGGAGGAAGCGC+CGG | 0.603519 | 1_3:-45997777 | Msa0120800:CDS |
| TGAGAATCAATCAAAGAGTG+TGG | 0.603965 | 1_3:-45997598 | Msa0120800:CDS |
| GAGGTGCGAAGGTTTGGTGG+AGG | 0.605729 | 1_3:+45998039 | None:intergenic |
| TTCAGGGAGCTAGTGTCTAG+AGG | 0.610453 | 1_3:-45994705 | Msa0120800:CDS |
| CAGGGCTGACATATCCATAG+AGG | 0.610631 | 1_3:+45994677 | None:intergenic |
| CTGAACCGTACAATAGGCAA+CGG | 0.610750 | 1_3:-45995061 | Msa0120800:CDS |
| AGAAGTGGTGGTGAGAGTGG+TGG | 0.614183 | 1_3:+45998006 | None:intergenic |
| TGTTCCATCTGCTTAAACCA+AGG | 0.614998 | 1_3:+45997483 | None:intergenic |
| TAGCTTCAATGGTGAGTGAA+CGG | 0.616747 | 1_3:-45997623 | Msa0120800:CDS |
| CGGTCAAAACCGGTTTCTAG+CGG | 0.616950 | 1_3:-45997798 | Msa0120800:CDS |
| AATTTACGCAGCTGAATCGA+GGG | 0.619923 | 1_3:-45997674 | Msa0120800:CDS |
| GGAGACGACACCGATGACTA+CGG | 0.620045 | 1_3:-45997918 | Msa0120800:CDS |
| GGAGTGGCTACGTCCAGCAG+TGG | 0.623352 | 1_3:-45996567 | Msa0120800:CDS |
| GTTGGATACTTGCCACCACT+AGG | 0.624726 | 1_3:-45994131 | Msa0120800:three_prime_UTR |
| GAATGGATTACCGTAGTCAT+CGG | 0.625254 | 1_3:+45997908 | None:intergenic |
| CCGAAGAGCAGCAGATATGT+CGG | 0.627184 | 1_3:+45994959 | None:intergenic |
| GGACTGAAGCTGTGGAGAAG+TGG | 0.627526 | 1_3:+45997991 | None:intergenic |
| GAATCTAAGAGGAAGAGACT+GGG | 0.629032 | 1_3:-45997652 | Msa0120800:CDS |
| TCTAGACACTAGCTCCCTGA+AGG | 0.629448 | 1_3:+45994707 | None:intergenic |
| ACTGTACCTCCACACCAAGA+CGG | 0.637094 | 1_3:+45996240 | None:intergenic |
| TTTGGATTGGACTGAAGCTG+TGG | 0.637149 | 1_3:+45997983 | None:intergenic |
| CATCTGTGAATAATTTACAG+AGG | 0.639365 | 1_3:+45994008 | None:intergenic |
| TGCTTATGTTGTTTACGTGG+TGG | 0.643523 | 1_3:-45994071 | Msa0120800:three_prime_UTR |
| GCTTTGTGTGGAGAACAAGT+TGG | 0.647871 | 1_3:-45994241 | Msa0120800:CDS |
| AATGGCTTCCCGTCTTGGTG+TGG | 0.649204 | 1_3:-45996249 | Msa0120800:CDS |
| CCGGTTTCTAGCGGTAACGG+TGG | 0.652211 | 1_3:-45997789 | Msa0120800:CDS |
| CTGAAGCTGTGGAGAAGTGG+TGG | 0.656134 | 1_3:+45997994 | None:intergenic |
| TGCTTTATTTATTACCACGT+AGG | 0.660728 | 1_3:+45998274 | None:intergenic |
| TTCCTGCTTCAATTTCACCT+AGG | 0.664237 | 1_3:-45997407 | Msa0120800:CDS |
| GGTGGTTGTTATCGTCGTGG+AGG | 0.671957 | 1_3:+45998078 | None:intergenic |
| GTATGCTTATGTTGTTTACG+TGG | 0.678478 | 1_3:-45994074 | Msa0120800:three_prime_UTR |
| CATTGTCAAACCTTAGATGG+CGG | 0.680970 | 1_3:-45996515 | Msa0120800:CDS |
| AAATAAACATGTCCTCCTGG+GGG | 0.683919 | 1_3:-45998310 | Msa0120800:five_prime_UTR |
| TGTGGAACAGTGTAAGAACA+AGG | 0.689866 | 1_3:-45997580 | Msa0120800:CDS |
| TCAGCTCTACAATTTCCTAG+TGG | 0.689993 | 1_3:+45994116 | None:intergenic |
| AGTGGTGGTTGTTATCGTCG+TGG | 0.691782 | 1_3:+45998075 | None:intergenic |
| GAAGATGAGTGATAACGTTG+TGG | 0.699211 | 1_3:+45998204 | None:intergenic |
| AATAAACATGTCCTCCTGGG+GGG | 0.713178 | 1_3:-45998309 | Msa0120800:five_prime_UTR |
| GTCAGCCCTGACATTCTGCG+AGG | 0.718203 | 1_3:-45994664 | Msa0120800:CDS |
| AGAAGCCATGAGATTAACGG+CGG | 0.721002 | 1_3:+45998127 | None:intergenic |
| GGTCCTCTATCTCTCCTACG+TGG | 0.769421 | 1_3:-45998288 | Msa0120800:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGAAAATTATATAGAA+AGG | + | chr1_3:45997306-45997325 | None:intergenic | 10.0% |
| !!! | ATTTTACAGAAATATAATAA+AGG | + | chr1_3:45998177-45998196 | None:intergenic | 10.0% |
| !!! | AAACATAAAATTTTCAGATT+CGG | + | chr1_3:45995001-45995020 | None:intergenic | 15.0% |
| !!! | GAAAATTTTATGTTTTGTTT+AGG | - | chr1_3:45995006-45995025 | Msa0120800:CDS | 15.0% |
| !! | CATGTTTACTTTATTAATTA+TGG | - | chr1_3:45995213-45995232 | Msa0120800:intron | 15.0% |
| !! | TTCAATGTATATTCTATTTA+TGG | - | chr1_3:45996195-45996214 | Msa0120800:intron | 15.0% |
| !!! | TTCTTTTATTTTCTTTTTGA+TGG | + | chr1_3:45996242-45996261 | None:intergenic | 15.0% |
| !!! | CTCATTTTAAAAAAGAAAAT+TGG | - | chr1_3:45996492-45996511 | Msa0120800:CDS | 15.0% |
| !! | TAAAGATTAAAAAGATCTTA+TGG | + | chr1_3:45996951-45996970 | None:intergenic | 15.0% |
| !!! | TAAGATCTTTTTAATCTTTA+TGG | - | chr1_3:45996951-45996970 | Msa0120800:intron | 15.0% |
| !! | TTGATTTAGTTAAATGCTTA+TGG | - | chr1_3:45994866-45994885 | Msa0120800:intron | 20.0% |
| !!! | TTTGCTGTTTTTGTTTTAAT+CGG | - | chr1_3:45995038-45995057 | Msa0120800:CDS | 20.0% |
| !! | TTTGATGTGCTAAAAAATAA+GGG | - | chr1_3:45995094-45995113 | Msa0120800:CDS | 20.0% |
| !! | TCTAATTGTAATAATGAACA+AGG | + | chr1_3:45995300-45995319 | None:intergenic | 20.0% |
| !!! | TAATTTGTGAACTTGAAATA+TGG | + | chr1_3:45995439-45995458 | None:intergenic | 20.0% |
| !! | ATATTACAAGAATAAGAACA+AGG | + | chr1_3:45995591-45995610 | None:intergenic | 20.0% |
| !! | AATAAATTTAAGAAAGCGAA+TGG | + | chr1_3:45995914-45995933 | None:intergenic | 20.0% |
| !!! | AATTGGAAATTTGAACTTTT+AGG | - | chr1_3:45996509-45996528 | Msa0120800:CDS | 20.0% |
| !!! | TATATTATTTCTTTTCCAAC+TGG | - | chr1_3:45996596-45996615 | Msa0120800:intron | 20.0% |
| !!! | TTACGACAATGATTTATTTT+TGG | - | chr1_3:45996750-45996769 | Msa0120800:intron | 20.0% |
| !!! | TGCTAGTATTTTCTTTTATA+TGG | - | chr1_3:45997792-45997811 | Msa0120800:CDS | 20.0% |
| !!! | AGTTGTAGTTTTTAATCTAT+TGG | - | chr1_3:45997933-45997952 | Msa0120800:CDS | 20.0% |
| !! | CAACAAATTCAATTATTGTT+AGG | - | chr1_3:45998047-45998066 | Msa0120800:CDS | 20.0% |
| !!! | AGGTTGATAATTTGAAGAAA+AGG | - | chr1_3:45994657-45994676 | Msa0120800:CDS | 25.0% |
| ! | TTAGTTAAATGCTTATGGAT+TGG | - | chr1_3:45994871-45994890 | Msa0120800:intron | 25.0% |
| !! | TTCGATACGTTTAGATTTTA+GGG | - | chr1_3:45994937-45994956 | Msa0120800:intron | 25.0% |
| ! | GTTTGATGTGCTAAAAAATA+AGG | - | chr1_3:45995093-45995112 | Msa0120800:CDS | 25.0% |
| ! | TCAAATGAAAAACAAAACTG+TGG | + | chr1_3:45995274-45995293 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTCACAAATTACA+TGG | - | chr1_3:45995441-45995460 | Msa0120800:intron | 25.0% |
| !! | TTCAAGTTCACAAATTACAT+GGG | - | chr1_3:45995442-45995461 | Msa0120800:intron | 25.0% |
| ! | GAATGACATTCAAACTATAA+TGG | + | chr1_3:45995553-45995572 | None:intergenic | 25.0% |
| ! | CATATCTAAAAATAAAGGAG+GGG | + | chr1_3:45995631-45995650 | None:intergenic | 25.0% |
| ! | CCATATCTAAAAATAAAGGA+GGG | + | chr1_3:45995632-45995651 | None:intergenic | 25.0% |
| ! | TCCATATCTAAAAATAAAGG+AGG | + | chr1_3:45995633-45995652 | None:intergenic | 25.0% |
| ! | CACTCCATATCTAAAAATAA+AGG | + | chr1_3:45995636-45995655 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTAGATATGGAG+TGG | - | chr1_3:45995634-45995653 | Msa0120800:intron | 25.0% |
| !!! | AGAGTTGTTCTAAAAATTAG+TGG | - | chr1_3:45995725-45995744 | Msa0120800:intron | 25.0% |
| !!! | TGTTCTAAAAATTAGTGGAT+CGG | - | chr1_3:45995730-45995749 | Msa0120800:intron | 25.0% |
| ! | GTCTGGTTATATTATATATG+TGG | - | chr1_3:45995828-45995847 | Msa0120800:intron | 25.0% |
| ! | GCTTTCTTAAATTTATTGTC+AGG | - | chr1_3:45995917-45995936 | Msa0120800:intron | 25.0% |
| !! | AACTTCATTTGAAACTAACA+TGG | + | chr1_3:45995946-45995965 | None:intergenic | 25.0% |
| !!! | GAAATTTGAACTTTTAGGTA+GGG | - | chr1_3:45996514-45996533 | Msa0120800:CDS | 25.0% |
| ! | CAAGCATCAAAAATTCATTT+AGG | + | chr1_3:45996827-45996846 | None:intergenic | 25.0% |
| !! | TTTTGATGCTTGAACTTTAT+TGG | - | chr1_3:45996835-45996854 | Msa0120800:intron | 25.0% |
| ! | AAAGGAAGAGTTGTTATATT+TGG | - | chr1_3:45997197-45997216 | Msa0120800:intron | 25.0% |
| ! | TAGATATTTAAATATGCGAC+AGG | + | chr1_3:45997722-45997741 | None:intergenic | 25.0% |
| ! | TGTCGCATATTTAAATATCT+AGG | - | chr1_3:45997721-45997740 | Msa0120800:CDS | 25.0% |
| ! | CTAAGCACTACAAAAATTTA+TGG | + | chr1_3:45997757-45997776 | None:intergenic | 25.0% |
| ! | CAGTTTATGAAAATAACCTT+GGG | + | chr1_3:45997830-45997849 | None:intergenic | 25.0% |
| ! | TCAGTTTATGAAAATAACCT+TGG | + | chr1_3:45997831-45997850 | None:intergenic | 25.0% |
| !! | TGCTTTATTTATTACCACGT+AGG | + | chr1_3:45993946-45993965 | None:intergenic | 30.0% |
| GAGAGACATAGAATGAATAA+TGG | - | chr1_3:45994689-45994708 | Msa0120800:CDS | 30.0% | |
| TTTATCATCATCAGCAAACT+TGG | + | chr1_3:45994783-45994802 | None:intergenic | 30.0% | |
| ! | CTTCGATACGTTTAGATTTT+AGG | - | chr1_3:45994936-45994955 | Msa0120800:intron | 30.0% |
| !!! | ATACGTTTAGATTTTAGGGT+AGG | - | chr1_3:45994941-45994960 | Msa0120800:intron | 30.0% |
| !!! | AGATTTTAGGGTAGGATTTT+TGG | - | chr1_3:45994949-45994968 | Msa0120800:CDS | 30.0% |
| AAAGTAAACATGTAAGTCCT+GGG | + | chr1_3:45995205-45995224 | None:intergenic | 30.0% | |
| TAAAGTAAACATGTAAGTCC+TGG | + | chr1_3:45995206-45995225 | None:intergenic | 30.0% | |
| TTGATTGTGTTGTCATTGTT+TGG | - | chr1_3:45995526-45995545 | Msa0120800:intron | 30.0% | |
| !!! | CCCTCCTTTATTTTTAGATA+TGG | - | chr1_3:45995629-45995648 | Msa0120800:intron | 30.0% |
| ! | CTGCAACTGTATTTCATTTT+AGG | + | chr1_3:45995809-45995828 | None:intergenic | 30.0% |
| AGTTTCAAATGAAGTTGCAA+TGG | - | chr1_3:45995950-45995969 | Msa0120800:intron | 30.0% | |
| ATTTGTAATCAGGATGTTCA+TGG | + | chr1_3:45996286-45996305 | None:intergenic | 30.0% | |
| ATGAACATCCTGATTACAAA+TGG | - | chr1_3:45996285-45996304 | Msa0120800:intron | 30.0% | |
| TGAACATCCTGATTACAAAT+GGG | - | chr1_3:45996286-45996305 | Msa0120800:intron | 30.0% | |
| !! | GGAAATTTGAACTTTTAGGT+AGG | - | chr1_3:45996513-45996532 | Msa0120800:CDS | 30.0% |
| TTCAATATGCTGCTAAACAA+AGG | + | chr1_3:45996683-45996702 | None:intergenic | 30.0% | |
| ! | ATATGAGATCAGTGTTTTCA+TGG | - | chr1_3:45996888-45996907 | Msa0120800:intron | 30.0% |
| TCTTAAATTTGTCAGCATGA+TGG | - | chr1_3:45997040-45997059 | Msa0120800:intron | 30.0% | |
| ! | TAAAGTTGATTGAAGCAGTA+AGG | + | chr1_3:45997081-45997100 | None:intergenic | 30.0% |
| ! | TCAATCAACTTTAGAGAAGA+TGG | - | chr1_3:45997088-45997107 | Msa0120800:intron | 30.0% |
| ! | CAATCAACTTTAGAGAAGAT+GGG | - | chr1_3:45997089-45997108 | Msa0120800:intron | 30.0% |
| ! | ATCAACCACATGGATATTTT+TGG | - | chr1_3:45997363-45997382 | Msa0120800:intron | 30.0% |
| !! | TATTGCATCTGGTCTTTTTA+TGG | - | chr1_3:45997602-45997621 | Msa0120800:CDS | 30.0% |
| !! | ATTGCATCTGGTCTTTTTAT+GGG | - | chr1_3:45997603-45997622 | Msa0120800:CDS | 30.0% |
| TTATGAATAGTCTGCTTCAT+TGG | + | chr1_3:45997875-45997894 | None:intergenic | 30.0% | |
| ACTACAACTGCACAAAAAAA+TGG | + | chr1_3:45997922-45997941 | None:intergenic | 30.0% | |
| ! | AACATTTCAAAAGCTTTGTG+TGG | - | chr1_3:45997964-45997983 | Msa0120800:CDS | 30.0% |
| GGAAATTAGAACCATTAAGT+TGG | - | chr1_3:45998068-45998087 | Msa0120800:CDS | 30.0% | |
| ACAACATAAGCATACGAAAA+CGG | + | chr1_3:45998138-45998157 | None:intergenic | 30.0% | |
| CATCTGTGAATAATTTACAG+AGG | + | chr1_3:45998212-45998231 | None:intergenic | 30.0% | |
| CGTATGGATTCAACAACAAA+CGG | - | chr1_3:45994399-45994418 | Msa0120800:intron | 35.0% | |
| ATAGAAAGGATCGAGAAGAA+TGG | - | chr1_3:45994477-45994496 | Msa0120800:intron | 35.0% | |
| TGAGAATCAATCAAAGAGTG+TGG | - | chr1_3:45994619-45994638 | Msa0120800:intron | 35.0% | |
| AAGCAGATGGAACATATTGT+TGG | - | chr1_3:45994743-45994762 | Msa0120800:CDS | 35.0% | |
| AGCAGATGGAACATATTGTT+GGG | - | chr1_3:45994744-45994763 | Msa0120800:CDS | 35.0% | |
| TTAAACCTCTTAGATTGCCT+AGG | + | chr1_3:45994830-45994849 | None:intergenic | 35.0% | |
| TGTGCTAAAAAATAAGGGAC+CGG | - | chr1_3:45995099-45995118 | Msa0120800:CDS | 35.0% | |
| ! | CTAGTGTGTGTTCAGTTTTA+CGG | + | chr1_3:45995328-45995347 | None:intergenic | 35.0% |
| ! | CACACTAGGATTTGAAACTA+AGG | - | chr1_3:45995340-45995359 | Msa0120800:intron | 35.0% |
| CGAATTGGAATTAAGAGCTT+AGG | + | chr1_3:45995470-45995489 | None:intergenic | 35.0% | |
| ! | CAATGCTAAGTAGTGTTACT+TGG | - | chr1_3:45995490-45995509 | Msa0120800:intron | 35.0% |
| TCTAAAAATAAAGGAGGGGA+AGG | + | chr1_3:45995627-45995646 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTGACAATGCTT+TGG | + | chr1_3:45995699-45995718 | None:intergenic | 35.0% |
| ! | AAGCATTGTCAAACCTTAGA+TGG | - | chr1_3:45995699-45995718 | Msa0120800:intron | 35.0% |
| AATATTGACCCTAAGGTTTG+TGG | - | chr1_3:45995776-45995795 | Msa0120800:intron | 35.0% | |
| GTACATTACCACAAACCTTA+GGG | + | chr1_3:45995787-45995806 | None:intergenic | 35.0% | |
| AATGAAATACAGTTGCAGTC+TGG | - | chr1_3:45995811-45995830 | Msa0120800:intron | 35.0% | |
| ! | AGTTCTCATGATTTTCCTCT+AGG | - | chr1_3:45995997-45996016 | Msa0120800:intron | 35.0% |
| ! | GTTCTCATGATTTTCCTCTA+GGG | - | chr1_3:45995998-45996017 | Msa0120800:intron | 35.0% |
| AAGCTTCAGCTAAACTGAAT+AGG | + | chr1_3:45996040-45996059 | None:intergenic | 35.0% | |
| CTTCTTCTTTGTGATACTTC+AGG | - | chr1_3:45996061-45996080 | Msa0120800:intron | 35.0% | |
| GTGATTAATCTTACCCAACT+TGG | + | chr1_3:45996169-45996188 | None:intergenic | 35.0% | |
| ! | TAGCTGTTCTATGTTTTCCT+TGG | + | chr1_3:45996316-45996335 | None:intergenic | 35.0% |
| ATAGAACAGCTAGTTGAAGT+TGG | - | chr1_3:45996324-45996343 | Msa0120800:intron | 35.0% | |
| TAGAACAGCTAGTTGAAGTT+GGG | - | chr1_3:45996325-45996344 | Msa0120800:intron | 35.0% | |
| !! | GAGTGAACTTTGACTTGTAT+GGG | - | chr1_3:45996399-45996418 | Msa0120800:intron | 35.0% |
| !! | AACTTTGACTTGTATGGGAT+TGG | - | chr1_3:45996404-45996423 | Msa0120800:intron | 35.0% |
| CATGTGCAATACATGAAGAT+GGG | + | chr1_3:45996864-45996883 | None:intergenic | 35.0% | |
| CATCTTCATGTATTGCACAT+GGG | - | chr1_3:45996863-45996882 | Msa0120800:intron | 35.0% | |
| GCTGACAAATTTAAGAACTC+AGG | + | chr1_3:45997036-45997055 | None:intergenic | 35.0% | |
| ACAAACTTCAGTTTCAATGC+AGG | - | chr1_3:45997127-45997146 | Msa0120800:intron | 35.0% | |
| GGAAGAGTTGTTATATTTGG+TGG | - | chr1_3:45997200-45997219 | Msa0120800:intron | 35.0% | |
| ! | GTTGTTATATTTGGTGGCAT+TGG | - | chr1_3:45997206-45997225 | Msa0120800:intron | 35.0% |
| !!! | ATATTTGGTGGCATTGGTTT+TGG | - | chr1_3:45997212-45997231 | Msa0120800:intron | 35.0% |
| GGAAAGAGTAATAGATGATG+CGG | + | chr1_3:45997338-45997357 | None:intergenic | 35.0% | |
| ! | AATATCCATGTGGTTGATGT+GGG | + | chr1_3:45997361-45997380 | None:intergenic | 35.0% |
| ! | AAATATCCATGTGGTTGATG+TGG | + | chr1_3:45997362-45997381 | None:intergenic | 35.0% |
| ATAGTATTGCTTACCAGGAA+TGG | + | chr1_3:45997585-45997604 | None:intergenic | 35.0% | |
| ATGCAATAGTATTGCTTACC+AGG | + | chr1_3:45997590-45997609 | None:intergenic | 35.0% | |
| GTAAGCAATACTATTGCATC+TGG | - | chr1_3:45997591-45997610 | Msa0120800:CDS | 35.0% | |
| !! | TTGCATCTGGTCTTTTTATG+GGG | - | chr1_3:45997604-45997623 | Msa0120800:CDS | 35.0% |
| ! | CTTATTTGAAATCCACTGCA+AGG | + | chr1_3:45997698-45997717 | None:intergenic | 35.0% |
| ! | ATGGAAGTTTTTGTAACCCA+AGG | - | chr1_3:45997811-45997830 | Msa0120800:CDS | 35.0% |
| ACAACTGCACAAAAAAATGG+TGG | + | chr1_3:45997919-45997938 | None:intergenic | 35.0% | |
| ! | GTTTTTAATCTATTGGCACC+CGG | - | chr1_3:45997940-45997959 | Msa0120800:CDS | 35.0% |
| ! | TTTTTAATCTATTGGCACCC+GGG | - | chr1_3:45997941-45997960 | Msa0120800:CDS | 35.0% |
| !!! | AAAGCTTTTGAAATGTTCCC+GGG | + | chr1_3:45997961-45997980 | None:intergenic | 35.0% |
| !!! | CAAAGCTTTTGAAATGTTCC+CGG | + | chr1_3:45997962-45997981 | None:intergenic | 35.0% |
| AGCATACGAAAACGGAATTT+GGG | + | chr1_3:45998130-45998149 | None:intergenic | 35.0% | |
| AAGCATACGAAAACGGAATT+TGG | + | chr1_3:45998131-45998150 | None:intergenic | 35.0% | |
| ! | GTATGCTTATGTTGTTTACG+TGG | - | chr1_3:45998143-45998162 | Msa0120800:five_prime_UTR | 35.0% |
| CCAGGAGGACATGTTTATTT+GGG | + | chr1_3:45993907-45993926 | None:intergenic | 40.0% | |
| CCAAATAAACATGTCCTCCT+GGG | - | chr1_3:45993905-45993924 | Msa0120800:three_prime_UTR | 40.0% | |
| CAAATAAACATGTCCTCCTG+GGG | - | chr1_3:45993906-45993925 | Msa0120800:three_prime_UTR | 40.0% | |
| AAATAAACATGTCCTCCTGG+GGG | - | chr1_3:45993907-45993926 | Msa0120800:three_prime_UTR | 40.0% | |
| ! | GAAGATGAGTGATAACGTTG+TGG | + | chr1_3:45994016-45994035 | None:intergenic | 40.0% |
| GCAAGAAGCCATGAGATTAA+CGG | + | chr1_3:45994096-45994115 | None:intergenic | 40.0% | |
| !! | GAATGGATTACCGTAGTCAT+CGG | + | chr1_3:45994312-45994331 | None:intergenic | 40.0% |
| CAACAACAAACGGTCAAAAC+CGG | - | chr1_3:45994409-45994428 | Msa0120800:intron | 40.0% | |
| AGTAGGAGCAGAGTATAGAA+AGG | - | chr1_3:45994463-45994482 | Msa0120800:intron | 40.0% | |
| AAATTTACGCAGCTGAATCG+AGG | - | chr1_3:45994542-45994561 | Msa0120800:intron | 40.0% | |
| AATTTACGCAGCTGAATCGA+GGG | - | chr1_3:45994543-45994562 | Msa0120800:intron | 40.0% | |
| GAATCTAAGAGGAAGAGACT+GGG | - | chr1_3:45994565-45994584 | Msa0120800:intron | 40.0% | |
| TAGCTTCAATGGTGAGTGAA+CGG | - | chr1_3:45994594-45994613 | Msa0120800:intron | 40.0% | |
| TGTGGAACAGTGTAAGAACA+AGG | - | chr1_3:45994637-45994656 | Msa0120800:intron | 40.0% | |
| GTTGCATTTCTGCTAGTCAT+TGG | - | chr1_3:45994711-45994730 | Msa0120800:CDS | 40.0% | |
| TGTTCCATCTGCTTAAACCA+AGG | + | chr1_3:45994737-45994756 | None:intergenic | 40.0% | |
| TATTGTTGGGAATTCGCTTC+CGG | - | chr1_3:45994757-45994776 | Msa0120800:CDS | 40.0% | |
| TTCCTGCTTCAATTTCACCT+AGG | - | chr1_3:45994810-45994829 | Msa0120800:intron | 40.0% | |
| TTTCACCTAGGCAATCTAAG+AGG | - | chr1_3:45994822-45994841 | Msa0120800:intron | 40.0% | |
| ! | ATGCTCCATTACTCCTTTTC+CGG | - | chr1_3:45995172-45995191 | Msa0120800:intron | 40.0% |
| CGTAAAACTGAACACACACT+AGG | - | chr1_3:45995326-45995345 | Msa0120800:intron | 40.0% | |
| ! | GATTTGAAACTAAGGTCTGC+AGG | - | chr1_3:45995348-45995367 | Msa0120800:intron | 40.0% |
| TCTGCAGGTGAGACTAAATA+TGG | - | chr1_3:45995363-45995382 | Msa0120800:intron | 40.0% | |
| CACTACTTAGCATTGCGAAT+TGG | + | chr1_3:45995485-45995504 | None:intergenic | 40.0% | |
| !! | GCTAAGTAGTGTTACTTGGA+TGG | - | chr1_3:45995494-45995513 | Msa0120800:intron | 40.0% |
| ! | TTGACAATGCTTTGGACTTC+AGG | + | chr1_3:45995691-45995710 | None:intergenic | 40.0% |
| CATTGTCAAACCTTAGATGG+CGG | - | chr1_3:45995702-45995721 | Msa0120800:intron | 40.0% | |
| !! | AATATTGCAGGTATCGGATC+CGG | + | chr1_3:45995762-45995781 | None:intergenic | 40.0% |
| AGGGTCAATATTGCAGGTAT+CGG | + | chr1_3:45995768-45995787 | None:intergenic | 40.0% | |
| TACCTGCAATATTGACCCTA+AGG | - | chr1_3:45995769-45995788 | Msa0120800:intron | 40.0% | |
| AACCTTAGGGTCAATATTGC+AGG | + | chr1_3:45995774-45995793 | None:intergenic | 40.0% | |
| GGTACATTACCACAAACCTT+AGG | + | chr1_3:45995788-45995807 | None:intergenic | 40.0% | |
| AGCAAAATACAAGACCCTAG+AGG | + | chr1_3:45996015-45996034 | None:intergenic | 40.0% | |
| CTTCAGGTAGCAATTGTTGT+TGG | - | chr1_3:45996077-45996096 | Msa0120800:CDS | 40.0% | |
| ! | ATTTCTTCTGTGGTGATGCA+TGG | - | chr1_3:45996108-45996127 | Msa0120800:CDS | 40.0% |
| ! | TTTCTTCTGTGGTGATGCAT+GGG | - | chr1_3:45996109-45996128 | Msa0120800:CDS | 40.0% |
| AGATGTACTGCATACCAAGT+TGG | - | chr1_3:45996152-45996171 | Msa0120800:intron | 40.0% | |
| GATGTACTGCATACCAAGTT+GGG | - | chr1_3:45996153-45996172 | Msa0120800:intron | 40.0% | |
| TGGATCACCCATTTGTAATC+AGG | + | chr1_3:45996296-45996315 | None:intergenic | 40.0% | |
| GATTACAAATGGGTGATCCA+AGG | - | chr1_3:45996296-45996315 | Msa0120800:intron | 40.0% | |
| !! | GGAGTGAACTTTGACTTGTA+TGG | - | chr1_3:45996398-45996417 | Msa0120800:intron | 40.0% |
| TTTAGGTAGGGCTGTAAATG+TGG | - | chr1_3:45996526-45996545 | Msa0120800:CDS | 40.0% | |
| CCATGTGCAATACATGAAGA+TGG | + | chr1_3:45996865-45996884 | None:intergenic | 40.0% | |
| CCATCTTCATGTATTGCACA+TGG | - | chr1_3:45996862-45996881 | Msa0120800:intron | 40.0% | |
| ! | GATATGTCGGTTGAGAAAAG+TGG | + | chr1_3:45997248-45997267 | None:intergenic | 40.0% |
| AGAGTAATAGATGATGCGGA+GGG | + | chr1_3:45997334-45997353 | None:intergenic | 40.0% | |
| AAGAGTAATAGATGATGCGG+AGG | + | chr1_3:45997335-45997354 | None:intergenic | 40.0% | |
| ! | ATATCCATGTGGTTGATGTG+GGG | + | chr1_3:45997360-45997379 | None:intergenic | 40.0% |
| GCTTGCCAAAAATATCCATG+TGG | + | chr1_3:45997371-45997390 | None:intergenic | 40.0% | |
| TTTCGAGCACATATCCTTCA+GGG | - | chr1_3:45997496-45997515 | Msa0120800:CDS | 40.0% | |
| ! | ATTTTCCTCGCAGAATGTCA+GGG | + | chr1_3:45997561-45997580 | None:intergenic | 40.0% |
| !! | TGCATCTGGTCTTTTTATGG+GGG | - | chr1_3:45997605-45997624 | Msa0120800:CDS | 40.0% |
| !!! | TCTTTTTATGGGGGTGTTTC+AGG | - | chr1_3:45997614-45997633 | Msa0120800:CDS | 40.0% |
| ! | GTTAGCTTATTGCTCCAGTT+TGG | + | chr1_3:45998014-45998033 | None:intergenic | 40.0% |
| GTGGCAAGTATCCAACTTAA+TGG | + | chr1_3:45998082-45998101 | None:intergenic | 40.0% | |
| TCAGCTCTACAATTTCCTAG+TGG | + | chr1_3:45998104-45998123 | None:intergenic | 40.0% | |
| ! | TGCTTATGTTGTTTACGTGG+TGG | - | chr1_3:45998146-45998165 | Msa0120800:five_prime_UTR | 40.0% |
| ! | TGTTCGCATTTTACCGACAA+AGG | + | chr1_3:45998269-45998288 | None:intergenic | 40.0% |
| CGGTAAAATGCGAACAGATA+TGG | - | chr1_3:45998273-45998292 | Msa0120800:five_prime_UTR | 40.0% | |
| CCCAAATAAACATGTCCTCC+TGG | - | chr1_3:45993904-45993923 | Msa0120800:three_prime_UTR | 45.0% | |
| CCCAGGAGGACATGTTTATT+TGG | + | chr1_3:45993908-45993927 | None:intergenic | 45.0% | |
| AATAAACATGTCCTCCTGGG+GGG | - | chr1_3:45993908-45993927 | Msa0120800:three_prime_UTR | 45.0% | |
| TTACCACGTAGGAGAGATAG+AGG | + | chr1_3:45993935-45993954 | None:intergenic | 45.0% | |
| CGTTAGGGAAAGAGAGAAGA+AGG | + | chr1_3:45994040-45994059 | None:intergenic | 45.0% | |
| GGTGAAAGGGTTTGAAGGAA+CGG | + | chr1_3:45994063-45994082 | None:intergenic | 45.0% | |
| AAGACGGTGAAAGGGTTTGA+AGG | + | chr1_3:45994068-45994087 | None:intergenic | 45.0% | |
| AGAAGCCATGAGATTAACGG+CGG | + | chr1_3:45994093-45994112 | None:intergenic | 45.0% | |
| ! | TTTGGATTGGACTGAAGCTG+TGG | + | chr1_3:45994237-45994256 | None:intergenic | 45.0% |
| ! | AGGTGGTGATGTGTTTGGAT+TGG | + | chr1_3:45994250-45994269 | None:intergenic | 45.0% |
| !! | AAACCGGTTTCTAGCGGTAA+CGG | - | chr1_3:45994425-45994444 | Msa0120800:intron | 45.0% |
| TCTATACTCTGCTCCTACTC+CGG | + | chr1_3:45994462-45994481 | None:intergenic | 45.0% | |
| CTGAATCGAGGGAATCTAAG+AGG | - | chr1_3:45994554-45994573 | Msa0120800:intron | 45.0% | |
| GGAATCTAAGAGGAAGAGAC+TGG | - | chr1_3:45994564-45994583 | Msa0120800:intron | 45.0% | |
| CTGGGAAGAAGTAGCTTCAA+TGG | - | chr1_3:45994583-45994602 | Msa0120800:intron | 45.0% | |
| ! | TTTCTGCTAGTCATTGGCCT+TGG | - | chr1_3:45994717-45994736 | Msa0120800:CDS | 45.0% |
| !! | TTGGCCTTGGTTTAAGCAGA+TGG | - | chr1_3:45994730-45994749 | Msa0120800:CDS | 45.0% |
| TCATCATCAGCAAACTTGGC+CGG | + | chr1_3:45994779-45994798 | None:intergenic | 45.0% | |
| TGCCTAGGTGAAATTGAAGC+AGG | + | chr1_3:45994815-45994834 | None:intergenic | 45.0% | |
| ! | TGCTCCATTACTCCTTTTCC+GGG | - | chr1_3:45995173-45995192 | Msa0120800:intron | 45.0% |
| CAATCCCGGAAAAGGAGTAA+TGG | + | chr1_3:45995180-45995199 | None:intergenic | 45.0% | |
| !! | GTAGTGTTACTTGGATGGAG+TGG | - | chr1_3:45995499-45995518 | Msa0120800:intron | 45.0% |
| ! | ATTAGTGGATCGGCACTTAC+CGG | - | chr1_3:45995740-45995759 | Msa0120800:intron | 45.0% |
| ! | CAGGTAGCAATTGTTGTTGG+AGG | - | chr1_3:45996080-45996099 | Msa0120800:CDS | 45.0% |
| GGAGGTCGTAATTTCTTCTG+TGG | - | chr1_3:45996098-45996117 | Msa0120800:CDS | 45.0% | |
| AGCTAGTTGAAGTTGGGATG+TGG | - | chr1_3:45996331-45996350 | Msa0120800:intron | 45.0% | |
| GCTAGTTGAAGTTGGGATGT+GGG | - | chr1_3:45996332-45996351 | Msa0120800:intron | 45.0% | |
| !! | ATGTGGGAAAGAGAGCATCT+TGG | - | chr1_3:45996348-45996367 | Msa0120800:intron | 45.0% |
| !! | AAAGAGAGCATCTTGGTGAC+AGG | - | chr1_3:45996355-45996374 | Msa0120800:intron | 45.0% |
| !! | GATTGGTAGTGCCAATTGCA+TGG | - | chr1_3:45996421-45996440 | Msa0120800:intron | 45.0% |
| TTTGCACTCCAATGATCCAG+AGG | + | chr1_3:45996456-45996475 | None:intergenic | 45.0% | |
| TGGATCATTGGAGTGCAAAG+AGG | - | chr1_3:45996457-45996476 | Msa0120800:CDS | 45.0% | |
| ACAGTGCCAATTTAACCTCC+CGG | + | chr1_3:45996568-45996587 | None:intergenic | 45.0% | |
| ATCAGCAAAGCACATCCAGT+TGG | + | chr1_3:45996614-45996633 | None:intergenic | 45.0% | |
| ! | TCAGATGTGCAACTCTAGGA+AGG | + | chr1_3:45996660-45996679 | None:intergenic | 45.0% |
| AAGGTCAGATGTGCAACTCT+AGG | + | chr1_3:45996664-45996683 | None:intergenic | 45.0% | |
| ! | CGTTTGCTGAACCGTACAAT+AGG | - | chr1_3:45997150-45997169 | Msa0120800:intron | 45.0% |
| CTGAACCGTACAATAGGCAA+CGG | - | chr1_3:45997156-45997175 | Msa0120800:intron | 45.0% | |
| TGAACCGTACAATAGGCAAC+GGG | - | chr1_3:45997157-45997176 | Msa0120800:intron | 45.0% | |
| TCCTTTCTCAAGATGCCTGA+TGG | + | chr1_3:45997183-45997202 | None:intergenic | 45.0% | |
| ! | TATCCATGTGGTTGATGTGG+GGG | + | chr1_3:45997359-45997378 | None:intergenic | 45.0% |
| CATCTACGTTGGTACCTTTG+AGG | + | chr1_3:45997439-45997458 | None:intergenic | 45.0% | |
| !! | CTCAAAGGTACCAACGTAGA+TGG | - | chr1_3:45997437-45997456 | Msa0120800:CDS | 45.0% |
| GTCATATACGCCATCTACGT+TGG | + | chr1_3:45997450-45997469 | None:intergenic | 45.0% | |
| CTTTCGAGCACATATCCTTC+AGG | - | chr1_3:45997495-45997514 | Msa0120800:CDS | 45.0% | |
| ! | CATTTTCCTCGCAGAATGTC+AGG | + | chr1_3:45997562-45997581 | None:intergenic | 45.0% |
| ATTCTCCATGTTCCTTGCAG+TGG | - | chr1_3:45997683-45997702 | Msa0120800:CDS | 45.0% | |
| GAAATCCACTGCAAGGAACA+TGG | + | chr1_3:45997691-45997710 | None:intergenic | 45.0% | |
| GCTTTGTGTGGAGAACAAGT+TGG | - | chr1_3:45997976-45997995 | Msa0120800:CDS | 45.0% | |
| GGCACACTTATTGACCAAAC+TGG | - | chr1_3:45997997-45998016 | Msa0120800:CDS | 45.0% | |
| GCTCTACAATTTCCTAGTGG+TGG | + | chr1_3:45998101-45998120 | None:intergenic | 45.0% | |
| TAGCAGTAGCCTTCCTTTGT+CGG | - | chr1_3:45998253-45998272 | Msa0120800:five_prime_UTR | 45.0% | |
| ! | CGCATTTTACCGACAAAGGA+AGG | + | chr1_3:45998265-45998284 | None:intergenic | 45.0% |
| GGTTTGAAGGAACGGCGTTA+GGG | + | chr1_3:45994055-45994074 | None:intergenic | 50.0% | |
| GAGATTAACGGCGGAGAAGA+CGG | + | chr1_3:45994084-45994103 | None:intergenic | 50.0% | |
| CTTCTCCGCCGTTAATCTCA+TGG | - | chr1_3:45994085-45994104 | Msa0120800:three_prime_UTR | 50.0% | |
| AGTGGTGGTTGTTATCGTCG+TGG | + | chr1_3:45994145-45994164 | None:intergenic | 50.0% | |
| AATCCATTCGACGATGACGC+TGG | - | chr1_3:45994323-45994342 | Msa0120800:intron | 50.0% | |
| TGTGATGCAACGACGTCGTA+TGG | - | chr1_3:45994383-45994402 | Msa0120800:intron | 50.0% | |
| ! | CGGTCAAAACCGGTTTCTAG+CGG | - | chr1_3:45994419-45994438 | Msa0120800:intron | 50.0% |
| CACGAACATCTGACGTTGTC+CGG | + | chr1_3:45995121-45995140 | None:intergenic | 50.0% | |
| GTAAGTCCTGGGTTCAATCC+CGG | + | chr1_3:45995194-45995213 | None:intergenic | 50.0% | |
| GTTTACTTGACCTCCACTGC+TGG | + | chr1_3:45995666-45995685 | None:intergenic | 50.0% | |
| GAACAACTCTCCGCCATCTA+AGG | + | chr1_3:45995715-45995734 | None:intergenic | 50.0% | |
| ACTGTACCTCCACACCAAGA+CGG | + | chr1_3:45995980-45995999 | None:intergenic | 50.0% | |
| GATGCATGGGTAACTGCAAC+AGG | - | chr1_3:45996122-45996141 | Msa0120800:CDS | 50.0% | |
| AACTGCCTCCTCTGGATCAT+TGG | - | chr1_3:45996445-45996464 | Msa0120800:intron | 50.0% | |
| AGGGCTGTAAATGTGGAGTG+AGG | - | chr1_3:45996533-45996552 | Msa0120800:CDS | 50.0% | |
| GAACCACCGGGAGGTTAAAT+TGG | - | chr1_3:45996559-45996578 | Msa0120800:CDS | 50.0% | |
| ATGGCCCGTTGCCTATTGTA+CGG | + | chr1_3:45997164-45997183 | None:intergenic | 50.0% | |
| GCCATCAGGCATCTTGAGAA+AGG | - | chr1_3:45997179-45997198 | Msa0120800:intron | 50.0% | |
| CCGAAGAGCAGCAGATATGT+CGG | + | chr1_3:45997261-45997280 | None:intergenic | 50.0% | |
| CCGACATATCTGCTGCTCTT+CGG | - | chr1_3:45997258-45997277 | Msa0120800:intron | 50.0% | |
| CGACATATCTGCTGCTCTTC+GGG | - | chr1_3:45997259-45997278 | Msa0120800:intron | 50.0% | |
| TTTCCCCCACATCAACCACA+TGG | - | chr1_3:45997353-45997372 | Msa0120800:intron | 50.0% | |
| CTGCTCTGCAGTTAATGCTC+AGG | - | chr1_3:45997409-45997428 | Msa0120800:CDS | 50.0% | |
| AATGCTCAGGCTGTCCTCAA+AGG | - | chr1_3:45997422-45997441 | Msa0120800:CDS | 50.0% | |
| TCTAGACACTAGCTCCCTGA+AGG | + | chr1_3:45997513-45997532 | None:intergenic | 50.0% | |
| TTCAGGGAGCTAGTGTCTAG+AGG | - | chr1_3:45997512-45997531 | Msa0120800:CDS | 50.0% | |
| !! | GTCTAGAGGTGTCACCTCTA+TGG | - | chr1_3:45997526-45997545 | Msa0120800:CDS | 50.0% |
| CAGGGCTGACATATCCATAG+AGG | + | chr1_3:45997543-45997562 | None:intergenic | 50.0% | |
| TGCGAGGAAAATGCCATTCC+TGG | - | chr1_3:45997569-45997588 | Msa0120800:CDS | 50.0% | |
| GTTGGATACTTGCCACCACT+AGG | - | chr1_3:45998086-45998105 | Msa0120800:CDS | 50.0% | |
| GGTCCTCTATCTCTCCTACG+TGG | - | chr1_3:45993929-45993948 | Msa0120800:three_prime_UTR | 55.0% | |
| GGGTTTGAAGGAACGGCGTT+AGG | + | chr1_3:45994056-45994075 | None:intergenic | 55.0% | |
| GGTGGTTGTTATCGTCGTGG+AGG | + | chr1_3:45994142-45994161 | None:intergenic | 55.0% | |
| ! | AGAAGTGGTGGTGAGAGTGG+TGG | + | chr1_3:45994214-45994233 | None:intergenic | 55.0% |
| ! | TGGAGAAGTGGTGGTGAGAG+TGG | + | chr1_3:45994217-45994236 | None:intergenic | 55.0% |
| CTGAAGCTGTGGAGAAGTGG+TGG | + | chr1_3:45994226-45994245 | None:intergenic | 55.0% | |
| GGACTGAAGCTGTGGAGAAG+TGG | + | chr1_3:45994229-45994248 | None:intergenic | 55.0% | |
| ! | GACGGAGGTGGTGATGTGTT+TGG | + | chr1_3:45994255-45994274 | None:intergenic | 55.0% |
| GGAGACGACACCGATGACTA+CGG | - | chr1_3:45994299-45994318 | Msa0120800:intron | 55.0% | |
| CTACCAGCGTCATCGTCGAA+TGG | + | chr1_3:45994329-45994348 | None:intergenic | 55.0% | |
| CCACCGTTACCGCTAGAAAC+CGG | + | chr1_3:45994431-45994450 | None:intergenic | 55.0% | |
| !! | GTTTCTAGCGGTAACGGTGG+AGG | - | chr1_3:45994431-45994450 | Msa0120800:intron | 55.0% |
| CCTGGGTTCAATCCCGGAAA+AGG | + | chr1_3:45995188-45995207 | None:intergenic | 55.0% | |
| ! | CCTTTTCCGGGATTGAACCC+AGG | - | chr1_3:45995185-45995204 | Msa0120800:intron | 55.0% |
| GTTGCAATGGCTTCCCGTCT+TGG | - | chr1_3:45995963-45995982 | Msa0120800:intron | 55.0% | |
| AATGGCTTCCCGTCTTGGTG+TGG | - | chr1_3:45995968-45995987 | Msa0120800:intron | 55.0% | |
| CTGTACCTCCACACCAAGAC+GGG | + | chr1_3:45995979-45995998 | None:intergenic | 55.0% | |
| ! | AGCATCTTGGTGACAGGCCA+GGG | - | chr1_3:45996361-45996380 | Msa0120800:intron | 55.0% |
| CAAAGTTCACTCCCCAGCTG+TGG | + | chr1_3:45996391-45996410 | None:intergenic | 55.0% | |
| GGAGGCAGTTGCCATGCAAT+TGG | + | chr1_3:45996435-45996454 | None:intergenic | 55.0% | |
| GCACTCCAATGATCCAGAGG+AGG | + | chr1_3:45996453-45996472 | None:intergenic | 55.0% | |
| TGGAGTGAGGTCAGAACCAC+CGG | - | chr1_3:45996546-45996565 | Msa0120800:CDS | 55.0% | |
| GTGCCAATTTAACCTCCCGG+TGG | + | chr1_3:45996565-45996584 | None:intergenic | 55.0% | |
| ACAATAGGCAACGGGCCATC+AGG | - | chr1_3:45997165-45997184 | Msa0120800:intron | 55.0% | |
| !!! | GGTGGCATTGGTTTTGGTGC+TGG | - | chr1_3:45997218-45997237 | Msa0120800:intron | 55.0% |
| CGGCGGAGAAGACGGTGAAA+GGG | + | chr1_3:45994076-45994095 | None:intergenic | 60.0% | |
| ACGGCGGAGAAGACGGTGAA+AGG | + | chr1_3:45994077-45994096 | None:intergenic | 60.0% | |
| !! | AGGTTTGGTGGAGGTGGTGG+TGG | + | chr1_3:45994172-45994191 | None:intergenic | 60.0% |
| !! | CGAAGGTTTGGTGGAGGTGG+TGG | + | chr1_3:45994175-45994194 | None:intergenic | 60.0% |
| !! | GTGCGAAGGTTTGGTGGAGG+TGG | + | chr1_3:45994178-45994197 | None:intergenic | 60.0% |
| !! | GAGGTGCGAAGGTTTGGTGG+AGG | + | chr1_3:45994181-45994200 | None:intergenic | 60.0% |
| GGTGAGGTGCGAAGGTTTGG+TGG | + | chr1_3:45994184-45994203 | None:intergenic | 60.0% | |
| GGTGGTGAGGTGCGAAGGTT+TGG | + | chr1_3:45994187-45994206 | None:intergenic | 60.0% | |
| ! | GTTGTGGTGGTGAGGTGCGA+AGG | + | chr1_3:45994192-45994211 | None:intergenic | 60.0% |
| ! | GAGTGGTGGTTGTGGTGGTG+AGG | + | chr1_3:45994200-45994219 | None:intergenic | 60.0% |
| GGTGAGAGTGGTGGTTGTGG+TGG | + | chr1_3:45994205-45994224 | None:intergenic | 60.0% | |
| GGTGGTGAGAGTGGTGGTTG+TGG | + | chr1_3:45994154-45994173 | None:intergenic | 60.0% | |
| !! | CCGGTTTCTAGCGGTAACGG+TGG | - | chr1_3:45994428-45994447 | Msa0120800:intron | 60.0% |
| ! | GAGCATCTTGGTGACAGGCC+AGG | - | chr1_3:45996360-45996379 | Msa0120800:intron | 60.0% |
| ! | TCTTGGTGACAGGCCAGGGA+AGG | - | chr1_3:45996365-45996384 | Msa0120800:intron | 60.0% |
| TGCATGGCAACTGCCTCCTC+TGG | - | chr1_3:45996437-45996456 | Msa0120800:intron | 60.0% | |
| GGAGTGAGGTCAGAACCACC+GGG | - | chr1_3:45996547-45996566 | Msa0120800:CDS | 60.0% | |
| TGCTGCTCTTCGGGCTTCAG+AGG | - | chr1_3:45997268-45997287 | Msa0120800:intron | 60.0% | |
| GCTGCTCTTCGGGCTTCAGA+GGG | - | chr1_3:45997269-45997288 | Msa0120800:intron | 60.0% | |
| GTCAGCCCTGACATTCTGCG+AGG | - | chr1_3:45997553-45997572 | Msa0120800:CDS | 60.0% | |
| GAGATAGAGGACCCCCCAGG+AGG | + | chr1_3:45993922-45993941 | None:intergenic | 65.0% | |
| GGAGAGATAGAGGACCCCCC+AGG | + | chr1_3:45993925-45993944 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGGTGAGAGTGG+TGG | + | chr1_3:45994160-45994179 | None:intergenic | 65.0% |
| !! | GGAGGTGGTGGTGGTGAGAG+TGG | + | chr1_3:45994163-45994182 | None:intergenic | 65.0% |
| ! | GGTGTCGTCTCCGTCGTCGT+CGG | + | chr1_3:45994291-45994310 | None:intergenic | 65.0% |
| ! | GGTAACGGTGGAGGAAGCGC+CGG | - | chr1_3:45994440-45994459 | Msa0120800:intron | 65.0% |
| GGAGTGGCTACGTCCAGCAG+TGG | - | chr1_3:45995650-45995669 | Msa0120800:intron | 65.0% | |
| GTGGCTACGTCCAGCAGTGG+AGG | - | chr1_3:45995653-45995672 | Msa0120800:intron | 65.0% | |
| ! | GGCTTCCCGTCTTGGTGTGG+AGG | - | chr1_3:45995971-45995990 | Msa0120800:intron | 65.0% |
| GTGAGGTCAGAACCACCGGG+AGG | - | chr1_3:45996550-45996569 | Msa0120800:CDS | 65.0% | |
| GTCTCCGTCGTCGTCGGCGA+CGG | + | chr1_3:45994285-45994304 | None:intergenic | 70.0% | |
| !! | GGTGGAGGAAGCGCCGGAGT+AGG | - | chr1_3:45994446-45994465 | Msa0120800:intron | 70.0% |
| AGGCCAGGGAAGGCCACAGC+TGG | - | chr1_3:45996375-45996394 | Msa0120800:intron | 70.0% | |
| GGCCAGGGAAGGCCACAGCT+GGG | - | chr1_3:45996376-45996395 | Msa0120800:intron | 70.0% | |
| GCCAGGGAAGGCCACAGCTG+GGG | - | chr1_3:45996377-45996396 | Msa0120800:intron | 70.0% | |
| TCCCCAGCTGTGGCCTTCCC+TGG | + | chr1_3:45996381-45996400 | None:intergenic | 70.0% | |
| TCCGTCGTCGTCGGCGACGG+CGG | + | chr1_3:45994282-45994301 | None:intergenic | 75.0% | |
| ! | GACGGCGGCGGAGACGGAGG+TGG | + | chr1_3:45994267-45994286 | None:intergenic | 80.0% |
| ! | GTCGGCGACGGCGGCGGAGA+CGG | + | chr1_3:45994273-45994292 | None:intergenic | 80.0% |
| ! | GTCGTCGTCGGCGACGGCGG+CGG | + | chr1_3:45994279-45994298 | None:intergenic | 80.0% |
| ! | GCCGCCGTCGCCGACGACGA+CGG | - | chr1_3:45994278-45994297 | Msa0120800:CDS | 80.0% |
| ! | GGCGACGGCGGCGGAGACGG+AGG | + | chr1_3:45994270-45994289 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 45993899 | 45998340 | 45993899 | ID=Msa0120800;Name=Msa0120800 |
| chr1_3 | mRNA | 45993899 | 45998340 | 45993899 | ID=Msa0120800-mRNA-1;Parent=Msa0120800;Name=Msa0120800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=205|1|1|1|1|1|7|308|511 |
| chr1_3 | exon | 45993899 | 45994304 | 45993899 | ID=Msa0120800-mRNA-1:exon:13858;Parent=Msa0120800-mRNA-1 |
| chr1_3 | exon | 45994649 | 45994819 | 45994649 | ID=Msa0120800-mRNA-1:exon:13857;Parent=Msa0120800-mRNA-1 |
| chr1_3 | exon | 45994949 | 45995184 | 45994949 | ID=Msa0120800-mRNA-1:exon:13856;Parent=Msa0120800-mRNA-1 |
| chr1_3 | exon | 45996065 | 45996156 | 45996065 | ID=Msa0120800-mRNA-1:exon:13855;Parent=Msa0120800-mRNA-1 |
| chr1_3 | exon | 45996247 | 45996300 | 45996247 | ID=Msa0120800-mRNA-1:exon:13854;Parent=Msa0120800-mRNA-1 |
| chr1_3 | exon | 45996449 | 45996593 | 45996449 | ID=Msa0120800-mRNA-1:exon:13853;Parent=Msa0120800-mRNA-1 |
| chr1_3 | exon | 45997396 | 45998340 | 45997396 | ID=Msa0120800-mRNA-1:exon:13852;Parent=Msa0120800-mRNA-1 |
| chr1_3 | five_prime_UTR | 45998136 | 45998340 | 45998136 | ID=Msa0120800-mRNA-1:five_prime_utr;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45997396 | 45998135 | 45997396 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45996449 | 45996593 | 45996449 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45996247 | 45996300 | 45996247 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45996065 | 45996156 | 45996065 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45994949 | 45995184 | 45994949 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45994649 | 45994819 | 45994649 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | CDS | 45994207 | 45994304 | 45994207 | ID=Msa0120800-mRNA-1:cds;Parent=Msa0120800-mRNA-1 |
| chr1_3 | three_prime_UTR | 45993899 | 45994206 | 45993899 | ID=Msa0120800-mRNA-1:three_prime_utr;Parent=Msa0120800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
