Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072530 | XP_003590392.1 | 99.023 | 512 | 2 | 1 | 1 | 509 | 1 | 512 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072530 | sp|Q9LSA9|PUMPK_ARATH | 53.906 | 256 | 113 | 2 | 252 | 505 | 78 | 330 | 9.80e-90 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072530 | A7UQU8 | 99.023 | 512 | 2 | 1 | 1 | 509 | 1 | 512 | 0.0 | 1056 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0072530 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072530 | Msa0120800 | 0.906546 | 1.322297e-80 | -8.615850e-47 |
| Msa0072530 | Msa0910620 | 0.801896 | 7.252794e-49 | -8.615850e-47 |
| Msa0072530 | Msa1042660 | 0.801138 | 1.037132e-48 | -8.615850e-47 |
| Msa0072530 | Msa1400930 | 0.806667 | 7.359428e-50 | -8.615850e-47 |
| Msa0072530 | Msa1428780 | 0.800640 | 1.310737e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072530 | MtrunA17_Chr1g0179531 | 99.023 | 512 | 2 | 1 | 1 | 509 | 1 | 512 | 0.0 | 1056 |
| Msa0072530 | MtrunA17_Chr8g0384081 | 50.758 | 264 | 120 | 3 | 249 | 505 | 56 | 316 | 1.62e-87 | 272 |
| Msa0072530 | MtrunA17_Chr2g0283871 | 35.644 | 101 | 59 | 3 | 130 | 225 | 23 | 122 | 1.13e-15 | 78.2 |
| Msa0072530 | MtrunA17_Chr4g0041151 | 36.275 | 102 | 58 | 3 | 130 | 225 | 31 | 131 | 1.28e-15 | 77.8 |
| Msa0072530 | MtrunA17_Chr1g0164461 | 41.346 | 104 | 51 | 4 | 118 | 218 | 27 | 123 | 1.58e-15 | 75.1 |
| Msa0072530 | MtrunA17_Chr6g0485241 | 37.255 | 102 | 61 | 2 | 128 | 227 | 128 | 228 | 2.43e-15 | 77.8 |
| Msa0072530 | MtrunA17_Chr3g0082261 | 41.346 | 104 | 51 | 4 | 118 | 218 | 27 | 123 | 1.76e-14 | 74.7 |
| Msa0072530 | MtrunA17_Chr5g0402321 | 34.000 | 100 | 60 | 2 | 130 | 223 | 22 | 121 | 1.40e-13 | 70.5 |
| Msa0072530 | MtrunA17_Chr4g0066271 | 38.000 | 100 | 58 | 2 | 130 | 225 | 117 | 216 | 3.48e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072530 | AT3G10030.1 | 56.364 | 550 | 184 | 7 | 1 | 506 | 1 | 538 | 0.0 | 590 |
| Msa0072530 | AT3G10030.2 | 55.086 | 521 | 178 | 7 | 1 | 477 | 1 | 509 | 0.0 | 542 |
| Msa0072530 | AT3G18680.1 | 53.906 | 256 | 113 | 2 | 252 | 505 | 78 | 330 | 9.97e-91 | 281 |
| Msa0072530 | AT3G18680.2 | 47.751 | 289 | 113 | 3 | 252 | 505 | 78 | 363 | 1.64e-83 | 263 |
| Msa0072530 | AT3G54390.1 | 36.441 | 118 | 65 | 3 | 124 | 239 | 32 | 141 | 3.35e-17 | 82.8 |
| Msa0072530 | AT3G54390.2 | 36.441 | 118 | 65 | 3 | 124 | 239 | 48 | 157 | 3.76e-17 | 82.8 |
| Msa0072530 | AT3G58630.1 | 30.872 | 149 | 78 | 3 | 130 | 253 | 26 | 174 | 2.71e-16 | 80.5 |
| Msa0072530 | AT3G58630.2 | 30.872 | 149 | 78 | 3 | 130 | 253 | 26 | 174 | 3.07e-16 | 80.1 |
| Msa0072530 | AT3G14180.1 | 37.607 | 117 | 66 | 4 | 109 | 221 | 63 | 176 | 5.91e-16 | 80.5 |
| Msa0072530 | AT3G24490.1 | 31.667 | 120 | 73 | 3 | 102 | 218 | 64 | 177 | 1.42e-12 | 69.3 |
| Msa0072530 | AT2G44730.1 | 38.043 | 92 | 53 | 2 | 130 | 217 | 64 | 155 | 2.44e-12 | 68.9 |
Find 174 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATACGAAAACGGAATT+TGG | 0.135590 | 1_2:+45553312 | None:intergenic |
| GACCCCAGGGCATGTTTATT+TGG | 0.171514 | 1_2:+45557524 | None:intergenic |
| AAAGGAAGAGTTGTTATATT+TGG | 0.225653 | 1_2:-45554243 | Msa0072530:CDS |
| TTGACAATGCTTTGGACTTC+AGG | 0.272821 | 1_2:+45555752 | None:intergenic |
| CAACAAATTCAATTATTGTT+AGG | 0.282934 | 1_2:-45553393 | Msa0072530:three_prime_UTR |
| CGACATATCTGCTGCTCTTC+GGG | 0.289993 | 1_2:-45554181 | Msa0072530:CDS |
| ATATTTGGTGGCATTGGTTT+TGG | 0.302206 | 1_2:-45554228 | Msa0072530:CDS |
| CTTTCGAGCACATATCCTTC+AGG | 0.327576 | 1_2:-45553945 | Msa0072530:CDS |
| GAACAACTCTCCGCCATCTA+AGG | 0.331588 | 1_2:+45555728 | None:intergenic |
| CGGTAAAATGCGAACAGATA+TGG | 0.336097 | 1_2:-45553167 | Msa0072530:three_prime_UTR |
| GGTGGTGAGGTGCGAAGGTT+TGG | 0.337687 | 1_2:+45557250 | None:intergenic |
| ACCCCAGGGCATGTTTATTT+GGG | 0.341925 | 1_2:+45557525 | None:intergenic |
| TGCGAGGAAAATGCCATTCC+TGG | 0.369901 | 1_2:-45553871 | Msa0072530:intron |
| CCGACATATCTGCTGCTCTT+CGG | 0.371066 | 1_2:-45554182 | Msa0072530:CDS |
| TATTGTTGGGAATTCGCTTC+CGG | 0.371702 | 1_2:-45556683 | Msa0072530:CDS |
| GTGGCAAGTATCCAACTTAA+TGG | 0.380113 | 1_2:+45553361 | None:intergenic |
| CGAAGGTTTGGTGGAGGTGG+TGG | 0.380551 | 1_2:+45557262 | None:intergenic |
| TCAATCAACTTTAGAGAAGA+TGG | 0.381962 | 1_2:-45554352 | Msa0072530:CDS |
| AACCTTAGGGTCAATATTGC+AGG | 0.385341 | 1_2:+45555669 | None:intergenic |
| GTCTAGAGGTGTCACCTCTA+TGG | 0.386263 | 1_2:-45553914 | Msa0072530:CDS |
| TCTAAGGTTTGACAATGCTT+TGG | 0.391295 | 1_2:+45555744 | None:intergenic |
| TTTCTGCTAGTCATTGGCCT+TGG | 0.394011 | 1_2:-45556723 | Msa0072530:CDS |
| AGGTTTGGTGGAGGTGGTGG+TGG | 0.399667 | 1_2:+45557265 | None:intergenic |
| TAGCAGTAGCCTTCCTTTGT+CGG | 0.402109 | 1_2:-45553187 | Msa0072530:three_prime_UTR |
| GGAGGTGGTGGTGGTGAGAG+TGG | 0.404152 | 1_2:+45557274 | None:intergenic |
| AGCATACGAAAACGGAATTT+GGG | 0.404272 | 1_2:+45553313 | None:intergenic |
| GTTGCATTTCTGCTAGTCAT+TGG | 0.405063 | 1_2:-45556729 | Msa0072530:CDS |
| GGCACACTTATTGACCAAAC+TGG | 0.406605 | 1_2:-45553443 | Msa0072530:CDS |
| GTTTACTTGACCTCCACTGC+TGG | 0.412531 | 1_2:+45555777 | None:intergenic |
| GTTAGCTTATTGCTCCAGTT+TGG | 0.414252 | 1_2:+45553429 | None:intergenic |
| AAGCATTGTCAAACCTTAGA+TGG | 0.420124 | 1_2:-45555741 | Msa0072530:CDS |
| GGAAATTAGAACCATTAAGT+TGG | 0.422247 | 1_2:-45553372 | Msa0072530:three_prime_UTR |
| ATTAGTGGATCGGCACTTAC+CGG | 0.426477 | 1_2:-45555700 | Msa0072530:CDS |
| CTTCAGGTAGCAATTGTTGT+TGG | 0.428109 | 1_2:-45555363 | Msa0072530:intron |
| AAGCAGATGGAACATATTGT+TGG | 0.431908 | 1_2:-45556697 | Msa0072530:CDS |
| GGTGAGGTGCGAAGGTTTGG+TGG | 0.432109 | 1_2:+45557253 | None:intergenic |
| GTGCGAAGGTTTGGTGGAGG+TGG | 0.433564 | 1_2:+45557259 | None:intergenic |
| GGGTTTGAAGGAACGGCGTT+AGG | 0.435162 | 1_2:+45557381 | None:intergenic |
| GGAAGAGTTGTTATATTTGG+TGG | 0.436188 | 1_2:-45554240 | Msa0072530:CDS |
| CTCAAAGGTACCAACGTAGA+TGG | 0.437085 | 1_2:-45554003 | Msa0072530:CDS |
| CGTTTGCTGAACCGTACAAT+AGG | 0.437374 | 1_2:-45554290 | Msa0072530:CDS |
| GTTGTTATATTTGGTGGCAT+TGG | 0.439242 | 1_2:-45554234 | Msa0072530:CDS |
| AGCAGATGGAACATATTGTT+GGG | 0.444247 | 1_2:-45556696 | Msa0072530:CDS |
| GACGGAGGTGGTGATGTGTT+TGG | 0.447470 | 1_2:+45557188 | None:intergenic |
| CAACAACAAACGGTCAAAAC+CGG | 0.450346 | 1_2:-45557031 | Msa0072530:CDS |
| CTGCTCTGCAGTTAATGCTC+AGG | 0.451851 | 1_2:-45554031 | Msa0072530:intron |
| AGGTTGATAATTTGAAGAAA+AGG | 0.452877 | 1_2:-45556783 | Msa0072530:CDS |
| CCACCGTTACCGCTTGAAAC+CGG | 0.453955 | 1_2:+45557012 | None:intergenic |
| GATGTACTGCATACCAAGTT+GGG | 0.454334 | 1_2:-45555287 | Msa0072530:intron |
| GTCGTCGTCGGCGACGGCGG+CGG | 0.456922 | 1_2:+45557164 | None:intergenic |
| CTTCTCCGCCGTTAATCTCA+TGG | 0.457893 | 1_2:-45557349 | Msa0072530:exon |
| TTTATCATCATCAGCAAACT+TGG | 0.459547 | 1_2:+45556660 | None:intergenic |
| CATCTACGTTGGTACCTTTG+AGG | 0.460201 | 1_2:+45554004 | None:intergenic |
| GAGAGACATAGAATGAATAA+TGG | 0.466819 | 1_2:-45556751 | Msa0072530:CDS |
| TGTGATGCAACGACGTCGTA+TGG | 0.469790 | 1_2:-45557057 | Msa0072530:CDS |
| TCCTTTCTCAAGATGCCTGA+TGG | 0.470108 | 1_2:+45554260 | None:intergenic |
| GTCGGCGACGGCGGCGGAGA+CGG | 0.470366 | 1_2:+45557170 | None:intergenic |
| ACAATAGGCAACGGGCCATC+AGG | 0.470864 | 1_2:-45554275 | Msa0072530:CDS |
| ACGGCGGAGAAGACGGTGAA+AGG | 0.471614 | 1_2:+45557360 | None:intergenic |
| TGGCCCAAATAAACATGCCC+TGG | 0.473463 | 1_2:-45557528 | Msa0072530:five_prime_UTR |
| TTGGCCTTGGTTTAAGCAGA+TGG | 0.477301 | 1_2:-45556710 | Msa0072530:CDS |
| CGGCGGAGAAGACGGTGAAA+GGG | 0.479455 | 1_2:+45557361 | None:intergenic |
| GTTGCAATGGCTTCCCGTCT+TGG | 0.480588 | 1_2:-45555477 | Msa0072530:CDS |
| GTCTCCGTCGTCGTCGGCGA+CGG | 0.482206 | 1_2:+45557158 | None:intergenic |
| ATAGAAAGGATCGAGAAGAA+TGG | 0.483589 | 1_2:-45556963 | Msa0072530:CDS |
| GGAATCTAAGAGGAAGAGAC+TGG | 0.484398 | 1_2:-45556876 | Msa0072530:CDS |
| GAGATTAACGGCGGAGAAGA+CGG | 0.487166 | 1_2:+45557353 | None:intergenic |
| TCTATACTCTGCTCCTACTC+CGG | 0.487389 | 1_2:+45556981 | None:intergenic |
| CAGGTAGCAATTGTTGTTGG+AGG | 0.488440 | 1_2:-45555360 | Msa0072530:CDS |
| TGGTGAGAGTGGTGGTGGTG+AGG | 0.490505 | 1_2:+45557237 | None:intergenic |
| ATTTCTTCTGTGGTGATGCA+TGG | 0.491743 | 1_2:-45555332 | Msa0072530:CDS |
| CTGGGAAGAAGTAGCTTCAA+TGG | 0.493185 | 1_2:-45556857 | Msa0072530:CDS |
| TGGAGAAGTGGTGGTGAGAG+TGG | 0.496490 | 1_2:+45557226 | None:intergenic |
| TGCTGCTCTTCGGGCTTCAG+AGG | 0.502112 | 1_2:-45554172 | Msa0072530:CDS |
| TAGGAGTGATGGAGGACCCC+AGG | 0.503695 | 1_2:+45557510 | None:intergenic |
| GATGCATGGGTAACTGCAAC+AGG | 0.506168 | 1_2:-45555318 | Msa0072530:CDS |
| TTTCGAGCACATATCCTTCA+GGG | 0.508101 | 1_2:-45553944 | Msa0072530:CDS |
| GACGGCGGCGGAGACGGAGG+TGG | 0.510775 | 1_2:+45557176 | None:intergenic |
| TAAAGTTGATTGAAGCAGTA+AGG | 0.510796 | 1_2:+45554362 | None:intergenic |
| GGCCCAAATAAACATGCCCT+GGG | 0.512704 | 1_2:-45557527 | Msa0072530:five_prime_UTR |
| TCTTAAATTTGTCAGCATGA+TGG | 0.513943 | 1_2:-45554400 | Msa0072530:intron |
| ATAGTATTGCTTACCAGGAA+TGG | 0.515872 | 1_2:+45553858 | None:intergenic |
| GTGATTAATCTTACCCAACT+TGG | 0.518834 | 1_2:+45555274 | None:intergenic |
| ACAACATAAGCATACGAAAA+CGG | 0.521147 | 1_2:+45553305 | None:intergenic |
| GCCATCAGGCATCTTGAGAA+AGG | 0.521422 | 1_2:-45554261 | Msa0072530:CDS |
| AAACCGGTTTCAAGCGGTAA+CGG | 0.521565 | 1_2:-45557015 | Msa0072530:CDS |
| GGTGGTGGTGGTGAGAGTGG+TGG | 0.521909 | 1_2:+45557277 | None:intergenic |
| CTGTACCTCCACACCAAGAC+GGG | 0.522588 | 1_2:+45555464 | None:intergenic |
| GCAAGAAGCCATGAGATTAA+CGG | 0.522956 | 1_2:+45557341 | None:intergenic |
| ATGGCCCGTTGCCTATTGTA+CGG | 0.527865 | 1_2:+45554279 | None:intergenic |
| TTATTACCACGTAGGAGTGA+TGG | 0.529462 | 1_2:+45557499 | None:intergenic |
| GGCTTCCCGTCTTGGTGTGG+AGG | 0.530692 | 1_2:-45555469 | Msa0072530:intron |
| TCCGTCGTCGTCGGCGACGG+CGG | 0.535708 | 1_2:+45557161 | None:intergenic |
| AGATGTACTGCATACCAAGT+TGG | 0.537226 | 1_2:-45555288 | Msa0072530:CDS |
| AACATTTCAAAAGCTTTGTG+TGG | 0.537883 | 1_2:-45553476 | Msa0072530:CDS |
| TCATCATCAGCAAACTTGGC+CGG | 0.538573 | 1_2:+45556664 | None:intergenic |
| AATATTGCAGGTATCGGATC+CGG | 0.539941 | 1_2:+45555681 | None:intergenic |
| TACCTGCAATATTGACCCTA+AGG | 0.540236 | 1_2:-45555671 | Msa0072530:intron |
| CTACCAGCGTCATCGTCGAA+TGG | 0.542605 | 1_2:+45557114 | None:intergenic |
| CAATCAACTTTAGAGAAGAT+GGG | 0.544338 | 1_2:-45554351 | Msa0072530:CDS |
| AAGACGGTGAAAGGGTTTGA+AGG | 0.545461 | 1_2:+45557369 | None:intergenic |
| CGTTAGGTAAAGAGAGAAGA+AGG | 0.546751 | 1_2:+45557397 | None:intergenic |
| TGCCTAGGTGAAATTGAAGC+AGG | 0.547449 | 1_2:+45556628 | None:intergenic |
| AGTGGTGGTGAGAGTGGTGG+TGG | 0.547464 | 1_2:+45557232 | None:intergenic |
| AGGGTCAATATTGCAGGTAT+CGG | 0.548147 | 1_2:+45555675 | None:intergenic |
| TTTCTTCTGTGGTGATGCAT+GGG | 0.549335 | 1_2:-45555331 | Msa0072530:CDS |
| AGGTGGTGATGTGTTTGGAT+TGG | 0.554894 | 1_2:+45557193 | None:intergenic |
| GTTTCAAGCGGTAACGGTGG+AGG | 0.557012 | 1_2:-45557009 | Msa0072530:CDS |
| TTTCACCTAGGCAATCTAAG+AGG | 0.557596 | 1_2:-45556618 | Msa0072530:intron |
| CTGAATCGAGGGAATCTAAG+AGG | 0.560567 | 1_2:-45556886 | Msa0072530:CDS |
| AGAAGTGGTGGTGAGAGTGG+TGG | 0.560608 | 1_2:+45557229 | None:intergenic |
| GTGGTGGTGGTGAGGTGCGA+AGG | 0.560743 | 1_2:+45557245 | None:intergenic |
| TGAACCGTACAATAGGCAAC+GGG | 0.562366 | 1_2:-45554283 | Msa0072530:CDS |
| GATATGTCGGTTGAGAAAAG+TGG | 0.562539 | 1_2:+45554195 | None:intergenic |
| GGCGACGGCGGCGGAGACGG+AGG | 0.562987 | 1_2:+45557173 | None:intergenic |
| AGTTTCAAATGAAGTTGCAA+TGG | 0.565412 | 1_2:-45555490 | Msa0072530:CDS |
| GCTCTACAATTTCCTAGTGG+TGG | 0.567609 | 1_2:+45553342 | None:intergenic |
| AATGCTCAGGCTGTCCTCAA+AGG | 0.568956 | 1_2:-45554018 | Msa0072530:CDS |
| GCTGCTCTTCGGGCTTCAGA+GGG | 0.570088 | 1_2:-45554171 | Msa0072530:intron |
| CGTATGGATTCAACAACAAA+CGG | 0.572327 | 1_2:-45557041 | Msa0072530:CDS |
| AGTAGGAGCAGAGTATAGAA+AGG | 0.577390 | 1_2:-45556977 | Msa0072530:CDS |
| ACAAACTTCAGTTTCAATGC+AGG | 0.580585 | 1_2:-45554313 | Msa0072530:CDS |
| GGTGGAGGAAGCGCCGGAGT+AGG | 0.580586 | 1_2:-45556994 | Msa0072530:CDS |
| GGTGAAAGGGTTTGAAGGAA+CGG | 0.581304 | 1_2:+45557374 | None:intergenic |
| GGTGTCGTCTCCGTCGTCGT+CGG | 0.581790 | 1_2:+45557152 | None:intergenic |
| AACTTCATTTGAAACTAACA+TGG | 0.586306 | 1_2:+45555497 | None:intergenic |
| GTCATATACGCCATCTACGT+TGG | 0.587713 | 1_2:+45553993 | None:intergenic |
| GGAGGTCGTAATTTCTTCTG+TGG | 0.589587 | 1_2:-45555342 | Msa0072530:CDS |
| TTAAACCTCTTAGATTGCCT+AGG | 0.591137 | 1_2:+45556613 | None:intergenic |
| GCCGCCGTCGCCGACGACGA+CGG | 0.592641 | 1_2:-45557162 | Msa0072530:CDS |
| GTGGCTACGTCCAGCAGTGG+AGG | 0.596879 | 1_2:-45555787 | Msa0072530:CDS |
| AAATTTACGCAGCTGAATCG+AGG | 0.599706 | 1_2:-45556898 | Msa0072530:CDS |
| AATCCATTCGACGATGACGC+TGG | 0.603457 | 1_2:-45557117 | Msa0072530:CDS |
| GGTAACGGTGGAGGAAGCGC+CGG | 0.603519 | 1_2:-45557000 | Msa0072530:CDS |
| TGAGAATCAATCAAAGAGTG+TGG | 0.603965 | 1_2:-45556821 | Msa0072530:CDS |
| GAGGTGCGAAGGTTTGGTGG+AGG | 0.605729 | 1_2:+45557256 | None:intergenic |
| CGGTCAAAACCGGTTTCAAG+CGG | 0.609671 | 1_2:-45557021 | Msa0072530:CDS |
| TTCAGGGAGCTAGTGTCTAG+AGG | 0.610453 | 1_2:-45553928 | Msa0072530:CDS |
| CAGGGCTGACATATCCATAG+AGG | 0.610631 | 1_2:+45553900 | None:intergenic |
| CTGAACCGTACAATAGGCAA+CGG | 0.610750 | 1_2:-45554284 | Msa0072530:CDS |
| TGTTCCATCTGCTTAAACCA+AGG | 0.614998 | 1_2:+45556706 | None:intergenic |
| TAGCTTCAATGGTGAGTGAA+CGG | 0.616747 | 1_2:-45556846 | Msa0072530:CDS |
| AGGAGTGATGGAGGACCCCA+GGG | 0.618956 | 1_2:+45557511 | None:intergenic |
| AATTTACGCAGCTGAATCGA+GGG | 0.619923 | 1_2:-45556897 | Msa0072530:CDS |
| GGAGACGACACCGATGACTA+CGG | 0.620045 | 1_2:-45557141 | Msa0072530:CDS |
| GGAGTGGCTACGTCCAGCAG+TGG | 0.623352 | 1_2:-45555790 | Msa0072530:CDS |
| GTTGGATACTTGCCACCACT+AGG | 0.624726 | 1_2:-45553354 | Msa0072530:three_prime_UTR |
| GAATGGATTACCGTAGTCAT+CGG | 0.625254 | 1_2:+45557131 | None:intergenic |
| CCGAAGAGCAGCAGATATGT+CGG | 0.627184 | 1_2:+45554182 | None:intergenic |
| GGACTGAAGCTGTGGAGAAG+TGG | 0.627526 | 1_2:+45557214 | None:intergenic |
| GAATCTAAGAGGAAGAGACT+GGG | 0.629032 | 1_2:-45556875 | Msa0072530:CDS |
| TCTAGACACTAGCTCCCTGA+AGG | 0.629448 | 1_2:+45553930 | None:intergenic |
| ACTGTACCTCCACACCAAGA+CGG | 0.637094 | 1_2:+45555463 | None:intergenic |
| TTTGGATTGGACTGAAGCTG+TGG | 0.637149 | 1_2:+45557206 | None:intergenic |
| CATCTGTGAATAATTTACAG+AGG | 0.639365 | 1_2:+45553231 | None:intergenic |
| TGCTTATGTTGTTTACGTGG+TGG | 0.643523 | 1_2:-45553294 | Msa0072530:three_prime_UTR |
| GCTTTGTGTGGAGAACAAGT+TGG | 0.647871 | 1_2:-45553464 | Msa0072530:CDS |
| AATGGCTTCCCGTCTTGGTG+TGG | 0.649204 | 1_2:-45555472 | Msa0072530:CDS |
| CTGAAGCTGTGGAGAAGTGG+TGG | 0.656134 | 1_2:+45557217 | None:intergenic |
| TGCTTTATTTATTACCACGT+AGG | 0.658708 | 1_2:+45557491 | None:intergenic |
| CCGGTTTCAAGCGGTAACGG+TGG | 0.659015 | 1_2:-45557012 | Msa0072530:CDS |
| TTCCTGCTTCAATTTCACCT+AGG | 0.664237 | 1_2:-45556630 | Msa0072530:CDS |
| GGTGGTTGTTATCGTCGTGG+AGG | 0.671957 | 1_2:+45557295 | None:intergenic |
| TTACCACGTAGGAGTGATGG+AGG | 0.676577 | 1_2:+45557502 | None:intergenic |
| GTATGCTTATGTTGTTTACG+TGG | 0.678478 | 1_2:-45553297 | Msa0072530:three_prime_UTR |
| CATTGTCAAACCTTAGATGG+CGG | 0.680970 | 1_2:-45555738 | Msa0072530:CDS |
| TGTGGAACAGTGTAAGAACA+AGG | 0.689866 | 1_2:-45556803 | Msa0072530:CDS |
| TCAGCTCTACAATTTCCTAG+TGG | 0.689993 | 1_2:+45553339 | None:intergenic |
| AGTGGTGGTTGTTATCGTCG+TGG | 0.691782 | 1_2:+45557292 | None:intergenic |
| GAAGATGTGTGATAACGTTG+TGG | 0.699211 | 1_2:+45557421 | None:intergenic |
| GTCAGCCCTGACATTCTGCG+AGG | 0.718203 | 1_2:-45553887 | Msa0072530:CDS |
| AGAAGCCATGAGATTAACGG+CGG | 0.721002 | 1_2:+45557344 | None:intergenic |
| GGTCCTCCATCACTCCTACG+TGG | 0.730956 | 1_2:-45557505 | Msa0072530:five_prime_UTR |
| GCCCAAATAAACATGCCCTG+GGG | 0.757552 | 1_2:-45557526 | Msa0072530:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGAAAATTATATAGAA+AGG | + | chr1_2:45556518-45556537 | None:intergenic | 10.0% |
| !!! | ATTTTACAGAAATATAATAA+AGG | + | chr1_2:45557389-45557408 | None:intergenic | 10.0% |
| !!! | AAACATAAAATTTTCAGATT+CGG | + | chr1_2:45554213-45554232 | None:intergenic | 15.0% |
| !!! | GAAAATTTTATGTTTTGTTT+AGG | - | chr1_2:45554218-45554237 | Msa0072530:CDS | 15.0% |
| !! | CATGTTTACTTTATTAATTA+TGG | - | chr1_2:45554425-45554444 | Msa0072530:intron | 15.0% |
| !! | TTCAATGTATATTCTATTTA+TGG | - | chr1_2:45555407-45555426 | Msa0072530:intron | 15.0% |
| !!! | TTCTTTTATTTTCTTTTTGA+TGG | + | chr1_2:45555454-45555473 | None:intergenic | 15.0% |
| !!! | CTCATTTTAAAAAAGAAAAT+TGG | - | chr1_2:45555704-45555723 | Msa0072530:CDS | 15.0% |
| !! | TAAAGATTAAAAAGATCTTA+TGG | + | chr1_2:45556163-45556182 | None:intergenic | 15.0% |
| !!! | TAAGATCTTTTTAATCTTTA+TGG | - | chr1_2:45556163-45556182 | Msa0072530:intron | 15.0% |
| !! | TTGATTTAGTTAAATGCTTA+TGG | - | chr1_2:45554078-45554097 | Msa0072530:intron | 20.0% |
| !!! | TTTGCTGTTTTTGTTTTAAT+CGG | - | chr1_2:45554250-45554269 | Msa0072530:CDS | 20.0% |
| !! | TTTGATGTGCTAAAAAATAA+GGG | - | chr1_2:45554306-45554325 | Msa0072530:CDS | 20.0% |
| !! | TCTAATTGTAATAATGAACA+AGG | + | chr1_2:45554512-45554531 | None:intergenic | 20.0% |
| !!! | TAATTTGTGAACTTGAAATA+TGG | + | chr1_2:45554651-45554670 | None:intergenic | 20.0% |
| !! | ATATTACAAGAATAAGAACA+AGG | + | chr1_2:45554803-45554822 | None:intergenic | 20.0% |
| !! | AATAAATTTAAGAAAGCGAA+TGG | + | chr1_2:45555126-45555145 | None:intergenic | 20.0% |
| !!! | AATTGGAAATTTGAACTTTT+AGG | - | chr1_2:45555721-45555740 | Msa0072530:CDS | 20.0% |
| !!! | TATATTATTTCTTTTCCAAC+TGG | - | chr1_2:45555808-45555827 | Msa0072530:intron | 20.0% |
| !!! | TTACGACAATGATTTATTTT+TGG | - | chr1_2:45555962-45555981 | Msa0072530:intron | 20.0% |
| !!! | TGCTAGTATTTTCTTTTATA+TGG | - | chr1_2:45557004-45557023 | Msa0072530:CDS | 20.0% |
| !!! | AGTTGTAGTTTTTAATCTAT+TGG | - | chr1_2:45557145-45557164 | Msa0072530:CDS | 20.0% |
| !! | CAACAAATTCAATTATTGTT+AGG | - | chr1_2:45557259-45557278 | Msa0072530:CDS | 20.0% |
| !!! | AGGTTGATAATTTGAAGAAA+AGG | - | chr1_2:45553869-45553888 | Msa0072530:intron | 25.0% |
| ! | TTAGTTAAATGCTTATGGAT+TGG | - | chr1_2:45554083-45554102 | Msa0072530:intron | 25.0% |
| !! | TTCGATACGTTTAGATTTTA+GGG | - | chr1_2:45554149-45554168 | Msa0072530:intron | 25.0% |
| ! | GTTTGATGTGCTAAAAAATA+AGG | - | chr1_2:45554305-45554324 | Msa0072530:CDS | 25.0% |
| ! | TCAAATGAAAAACAAAACTG+TGG | + | chr1_2:45554486-45554505 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTCACAAATTACA+TGG | - | chr1_2:45554653-45554672 | Msa0072530:intron | 25.0% |
| !! | TTCAAGTTCACAAATTACAT+GGG | - | chr1_2:45554654-45554673 | Msa0072530:intron | 25.0% |
| ! | GAATGACATTCAAACTATAA+TGG | + | chr1_2:45554765-45554784 | None:intergenic | 25.0% |
| ! | CATATCTAAAAATAAAGGAG+GGG | + | chr1_2:45554843-45554862 | None:intergenic | 25.0% |
| ! | CCATATCTAAAAATAAAGGA+GGG | + | chr1_2:45554844-45554863 | None:intergenic | 25.0% |
| ! | TCCATATCTAAAAATAAAGG+AGG | + | chr1_2:45554845-45554864 | None:intergenic | 25.0% |
| ! | CACTCCATATCTAAAAATAA+AGG | + | chr1_2:45554848-45554867 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTAGATATGGAG+TGG | - | chr1_2:45554846-45554865 | Msa0072530:intron | 25.0% |
| !!! | AGAGTTGTTCTAAAAATTAG+TGG | - | chr1_2:45554937-45554956 | Msa0072530:intron | 25.0% |
| !!! | TGTTCTAAAAATTAGTGGAT+CGG | - | chr1_2:45554942-45554961 | Msa0072530:intron | 25.0% |
| ! | GTCTGGTTATATTATATATG+TGG | - | chr1_2:45555040-45555059 | Msa0072530:intron | 25.0% |
| ! | GCTTTCTTAAATTTATTGTC+AGG | - | chr1_2:45555129-45555148 | Msa0072530:intron | 25.0% |
| !! | AACTTCATTTGAAACTAACA+TGG | + | chr1_2:45555158-45555177 | None:intergenic | 25.0% |
| !!! | GAAATTTGAACTTTTAGGTA+GGG | - | chr1_2:45555726-45555745 | Msa0072530:CDS | 25.0% |
| ! | CAAGCATCAAAAATTCATTT+AGG | + | chr1_2:45556039-45556058 | None:intergenic | 25.0% |
| !! | TTTTGATGCTTGAACTTTAT+TGG | - | chr1_2:45556047-45556066 | Msa0072530:intron | 25.0% |
| ! | AAAGGAAGAGTTGTTATATT+TGG | - | chr1_2:45556409-45556428 | Msa0072530:intron | 25.0% |
| ! | TAGATATTTAAATATGCGAC+AGG | + | chr1_2:45556934-45556953 | None:intergenic | 25.0% |
| ! | TGTCGCATATTTAAATATCT+AGG | - | chr1_2:45556933-45556952 | Msa0072530:CDS | 25.0% |
| ! | CTAAGCACTACAAAAATTTA+TGG | + | chr1_2:45556969-45556988 | None:intergenic | 25.0% |
| ! | CAGTTTATGAAAATAACCTT+GGG | + | chr1_2:45557042-45557061 | None:intergenic | 25.0% |
| ! | TCAGTTTATGAAAATAACCT+TGG | + | chr1_2:45557043-45557062 | None:intergenic | 25.0% |
| !! | TGCTTTATTTATTACCACGT+AGG | + | chr1_2:45553164-45553183 | None:intergenic | 30.0% |
| GAGAGACATAGAATGAATAA+TGG | - | chr1_2:45553901-45553920 | Msa0072530:CDS | 30.0% | |
| TTTATCATCATCAGCAAACT+TGG | + | chr1_2:45553995-45554014 | None:intergenic | 30.0% | |
| ! | CTTCGATACGTTTAGATTTT+AGG | - | chr1_2:45554148-45554167 | Msa0072530:intron | 30.0% |
| !!! | ATACGTTTAGATTTTAGGGT+AGG | - | chr1_2:45554153-45554172 | Msa0072530:intron | 30.0% |
| !!! | AGATTTTAGGGTAGGATTTT+TGG | - | chr1_2:45554161-45554180 | Msa0072530:intron | 30.0% |
| AAAGTAAACATGTAAGTCCT+GGG | + | chr1_2:45554417-45554436 | None:intergenic | 30.0% | |
| TAAAGTAAACATGTAAGTCC+TGG | + | chr1_2:45554418-45554437 | None:intergenic | 30.0% | |
| TTGATTGTGTTGTCATTGTT+TGG | - | chr1_2:45554738-45554757 | Msa0072530:intron | 30.0% | |
| !!! | CCCTCCTTTATTTTTAGATA+TGG | - | chr1_2:45554841-45554860 | Msa0072530:intron | 30.0% |
| ! | CTGCAACTGTATTTCATTTT+AGG | + | chr1_2:45555021-45555040 | None:intergenic | 30.0% |
| AGTTTCAAATGAAGTTGCAA+TGG | - | chr1_2:45555162-45555181 | Msa0072530:intron | 30.0% | |
| ATTTGTAATCAGGATGTTCA+TGG | + | chr1_2:45555498-45555517 | None:intergenic | 30.0% | |
| ATGAACATCCTGATTACAAA+TGG | - | chr1_2:45555497-45555516 | Msa0072530:CDS | 30.0% | |
| TGAACATCCTGATTACAAAT+GGG | - | chr1_2:45555498-45555517 | Msa0072530:CDS | 30.0% | |
| !! | GGAAATTTGAACTTTTAGGT+AGG | - | chr1_2:45555725-45555744 | Msa0072530:CDS | 30.0% |
| TTCAATATGCTGCTAAACAA+AGG | + | chr1_2:45555895-45555914 | None:intergenic | 30.0% | |
| ! | ATATGAGATCAGTGTTTTCA+TGG | - | chr1_2:45556100-45556119 | Msa0072530:intron | 30.0% |
| TCTTAAATTTGTCAGCATGA+TGG | - | chr1_2:45556252-45556271 | Msa0072530:intron | 30.0% | |
| ! | TAAAGTTGATTGAAGCAGTA+AGG | + | chr1_2:45556293-45556312 | None:intergenic | 30.0% |
| ! | TCAATCAACTTTAGAGAAGA+TGG | - | chr1_2:45556300-45556319 | Msa0072530:intron | 30.0% |
| ! | CAATCAACTTTAGAGAAGAT+GGG | - | chr1_2:45556301-45556320 | Msa0072530:intron | 30.0% |
| ! | ATCAACCACATGGATATTTT+TGG | - | chr1_2:45556575-45556594 | Msa0072530:intron | 30.0% |
| !! | TATTGCATCTGGTCTTTTTA+TGG | - | chr1_2:45556814-45556833 | Msa0072530:CDS | 30.0% |
| !! | ATTGCATCTGGTCTTTTTAT+GGG | - | chr1_2:45556815-45556834 | Msa0072530:CDS | 30.0% |
| TTATGAATAGTCTGCTTCAT+TGG | + | chr1_2:45557087-45557106 | None:intergenic | 30.0% | |
| ! | AACATTTCAAAAGCTTTGTG+TGG | - | chr1_2:45557176-45557195 | Msa0072530:CDS | 30.0% |
| GGAAATTAGAACCATTAAGT+TGG | - | chr1_2:45557280-45557299 | Msa0072530:CDS | 30.0% | |
| ACAACATAAGCATACGAAAA+CGG | + | chr1_2:45557350-45557369 | None:intergenic | 30.0% | |
| CATCTGTGAATAATTTACAG+AGG | + | chr1_2:45557424-45557443 | None:intergenic | 30.0% | |
| CGTATGGATTCAACAACAAA+CGG | - | chr1_2:45553611-45553630 | Msa0072530:intron | 35.0% | |
| ATAGAAAGGATCGAGAAGAA+TGG | - | chr1_2:45553689-45553708 | Msa0072530:intron | 35.0% | |
| TGAGAATCAATCAAAGAGTG+TGG | - | chr1_2:45553831-45553850 | Msa0072530:intron | 35.0% | |
| AAGCAGATGGAACATATTGT+TGG | - | chr1_2:45553955-45553974 | Msa0072530:CDS | 35.0% | |
| AGCAGATGGAACATATTGTT+GGG | - | chr1_2:45553956-45553975 | Msa0072530:CDS | 35.0% | |
| TTAAACCTCTTAGATTGCCT+AGG | + | chr1_2:45554042-45554061 | None:intergenic | 35.0% | |
| TGTGCTAAAAAATAAGGGAC+CGG | - | chr1_2:45554311-45554330 | Msa0072530:CDS | 35.0% | |
| ! | CTAGTGTGTGTTCAGTTTTA+CGG | + | chr1_2:45554540-45554559 | None:intergenic | 35.0% |
| ! | CACACTAGGATTTGAAACTA+AGG | - | chr1_2:45554552-45554571 | Msa0072530:intron | 35.0% |
| CGAATTGGAATTAAGAGCTT+AGG | + | chr1_2:45554682-45554701 | None:intergenic | 35.0% | |
| ! | CAATGCTAAGTAGTGTTACT+TGG | - | chr1_2:45554702-45554721 | Msa0072530:intron | 35.0% |
| TCTAAAAATAAAGGAGGGGA+AGG | + | chr1_2:45554839-45554858 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTGACAATGCTT+TGG | + | chr1_2:45554911-45554930 | None:intergenic | 35.0% |
| ! | AAGCATTGTCAAACCTTAGA+TGG | - | chr1_2:45554911-45554930 | Msa0072530:intron | 35.0% |
| AATATTGACCCTAAGGTTTG+TGG | - | chr1_2:45554988-45555007 | Msa0072530:intron | 35.0% | |
| GTACATTACCACAAACCTTA+GGG | + | chr1_2:45554999-45555018 | None:intergenic | 35.0% | |
| AATGAAATACAGTTGCAGTC+TGG | - | chr1_2:45555023-45555042 | Msa0072530:intron | 35.0% | |
| ! | AGTTCTCATGATTTTCCTCT+AGG | - | chr1_2:45555209-45555228 | Msa0072530:intron | 35.0% |
| ! | GTTCTCATGATTTTCCTCTA+GGG | - | chr1_2:45555210-45555229 | Msa0072530:intron | 35.0% |
| AAGCTTCAGCTAAACTGAAT+AGG | + | chr1_2:45555252-45555271 | None:intergenic | 35.0% | |
| CTTCTTCTTTGTGATACTTC+AGG | - | chr1_2:45555273-45555292 | Msa0072530:intron | 35.0% | |
| GTGATTAATCTTACCCAACT+TGG | + | chr1_2:45555381-45555400 | None:intergenic | 35.0% | |
| ! | TAGCTGTTCTATGTTTTCCT+TGG | + | chr1_2:45555528-45555547 | None:intergenic | 35.0% |
| ATAGAACAGCTAGTTGAAGT+TGG | - | chr1_2:45555536-45555555 | Msa0072530:intron | 35.0% | |
| TAGAACAGCTAGTTGAAGTT+GGG | - | chr1_2:45555537-45555556 | Msa0072530:intron | 35.0% | |
| !! | GAGTGAACTTTGACTTGTAT+GGG | - | chr1_2:45555611-45555630 | Msa0072530:intron | 35.0% |
| !! | AACTTTGACTTGTATGGGAT+TGG | - | chr1_2:45555616-45555635 | Msa0072530:intron | 35.0% |
| CATGTGCAATACATGAAGAT+GGG | + | chr1_2:45556076-45556095 | None:intergenic | 35.0% | |
| CATCTTCATGTATTGCACAT+GGG | - | chr1_2:45556075-45556094 | Msa0072530:intron | 35.0% | |
| GCTGACAAATTTAAGAACTC+AGG | + | chr1_2:45556248-45556267 | None:intergenic | 35.0% | |
| ACAAACTTCAGTTTCAATGC+AGG | - | chr1_2:45556339-45556358 | Msa0072530:intron | 35.0% | |
| GGAAGAGTTGTTATATTTGG+TGG | - | chr1_2:45556412-45556431 | Msa0072530:intron | 35.0% | |
| ! | GTTGTTATATTTGGTGGCAT+TGG | - | chr1_2:45556418-45556437 | Msa0072530:intron | 35.0% |
| !!! | ATATTTGGTGGCATTGGTTT+TGG | - | chr1_2:45556424-45556443 | Msa0072530:intron | 35.0% |
| GGAAAGAGTAATAGATGATG+CGG | + | chr1_2:45556550-45556569 | None:intergenic | 35.0% | |
| ! | AATATCCATGTGGTTGATGT+GGG | + | chr1_2:45556573-45556592 | None:intergenic | 35.0% |
| ! | AAATATCCATGTGGTTGATG+TGG | + | chr1_2:45556574-45556593 | None:intergenic | 35.0% |
| ATAGTATTGCTTACCAGGAA+TGG | + | chr1_2:45556797-45556816 | None:intergenic | 35.0% | |
| ATGCAATAGTATTGCTTACC+AGG | + | chr1_2:45556802-45556821 | None:intergenic | 35.0% | |
| GTAAGCAATACTATTGCATC+TGG | - | chr1_2:45556803-45556822 | Msa0072530:CDS | 35.0% | |
| !! | TTGCATCTGGTCTTTTTATG+GGG | - | chr1_2:45556816-45556835 | Msa0072530:CDS | 35.0% |
| ! | CTTATTTGAAATCCACTGCA+AGG | + | chr1_2:45556910-45556929 | None:intergenic | 35.0% |
| ! | ATGGAAGTTTTTGTAACCCA+AGG | - | chr1_2:45557023-45557042 | Msa0072530:CDS | 35.0% |
| ACTACAACTGCACAAAGAAA+TGG | + | chr1_2:45557134-45557153 | None:intergenic | 35.0% | |
| ! | GTTTTTAATCTATTGGCACC+CGG | - | chr1_2:45557152-45557171 | Msa0072530:CDS | 35.0% |
| ! | TTTTTAATCTATTGGCACCC+GGG | - | chr1_2:45557153-45557172 | Msa0072530:CDS | 35.0% |
| !!! | AAAGCTTTTGAAATGTTCCC+GGG | + | chr1_2:45557173-45557192 | None:intergenic | 35.0% |
| !!! | CAAAGCTTTTGAAATGTTCC+CGG | + | chr1_2:45557174-45557193 | None:intergenic | 35.0% |
| AGCATACGAAAACGGAATTT+GGG | + | chr1_2:45557342-45557361 | None:intergenic | 35.0% | |
| AAGCATACGAAAACGGAATT+TGG | + | chr1_2:45557343-45557362 | None:intergenic | 35.0% | |
| ! | GTATGCTTATGTTGTTTACG+TGG | - | chr1_2:45557355-45557374 | Msa0072530:five_prime_UTR | 35.0% |
| TTATTACCACGTAGGAGTGA+TGG | + | chr1_2:45553156-45553175 | None:intergenic | 40.0% | |
| ! | GAAGATGTGTGATAACGTTG+TGG | + | chr1_2:45553234-45553253 | None:intergenic | 40.0% |
| CGTTAGGTAAAGAGAGAAGA+AGG | + | chr1_2:45553258-45553277 | None:intergenic | 40.0% | |
| GCAAGAAGCCATGAGATTAA+CGG | + | chr1_2:45553314-45553333 | None:intergenic | 40.0% | |
| !! | GAATGGATTACCGTAGTCAT+CGG | + | chr1_2:45553524-45553543 | None:intergenic | 40.0% |
| CAACAACAAACGGTCAAAAC+CGG | - | chr1_2:45553621-45553640 | Msa0072530:intron | 40.0% | |
| AGTAGGAGCAGAGTATAGAA+AGG | - | chr1_2:45553675-45553694 | Msa0072530:intron | 40.0% | |
| AAATTTACGCAGCTGAATCG+AGG | - | chr1_2:45553754-45553773 | Msa0072530:intron | 40.0% | |
| AATTTACGCAGCTGAATCGA+GGG | - | chr1_2:45553755-45553774 | Msa0072530:intron | 40.0% | |
| GAATCTAAGAGGAAGAGACT+GGG | - | chr1_2:45553777-45553796 | Msa0072530:intron | 40.0% | |
| TAGCTTCAATGGTGAGTGAA+CGG | - | chr1_2:45553806-45553825 | Msa0072530:intron | 40.0% | |
| TGTGGAACAGTGTAAGAACA+AGG | - | chr1_2:45553849-45553868 | Msa0072530:intron | 40.0% | |
| GTTGCATTTCTGCTAGTCAT+TGG | - | chr1_2:45553923-45553942 | Msa0072530:CDS | 40.0% | |
| TGTTCCATCTGCTTAAACCA+AGG | + | chr1_2:45553949-45553968 | None:intergenic | 40.0% | |
| TATTGTTGGGAATTCGCTTC+CGG | - | chr1_2:45553969-45553988 | Msa0072530:CDS | 40.0% | |
| TTCCTGCTTCAATTTCACCT+AGG | - | chr1_2:45554022-45554041 | Msa0072530:CDS | 40.0% | |
| TTTCACCTAGGCAATCTAAG+AGG | - | chr1_2:45554034-45554053 | Msa0072530:intron | 40.0% | |
| ! | ATGCTCCATTACTCCTTTTC+CGG | - | chr1_2:45554384-45554403 | Msa0072530:CDS | 40.0% |
| CGTAAAACTGAACACACACT+AGG | - | chr1_2:45554538-45554557 | Msa0072530:intron | 40.0% | |
| ! | GATTTGAAACTAAGGTCTGC+AGG | - | chr1_2:45554560-45554579 | Msa0072530:intron | 40.0% |
| TCTGCAGGTGAGACTAAATA+TGG | - | chr1_2:45554575-45554594 | Msa0072530:intron | 40.0% | |
| CACTACTTAGCATTGCGAAT+TGG | + | chr1_2:45554697-45554716 | None:intergenic | 40.0% | |
| !! | GCTAAGTAGTGTTACTTGGA+TGG | - | chr1_2:45554706-45554725 | Msa0072530:intron | 40.0% |
| ! | TTGACAATGCTTTGGACTTC+AGG | + | chr1_2:45554903-45554922 | None:intergenic | 40.0% |
| CATTGTCAAACCTTAGATGG+CGG | - | chr1_2:45554914-45554933 | Msa0072530:intron | 40.0% | |
| !! | AATATTGCAGGTATCGGATC+CGG | + | chr1_2:45554974-45554993 | None:intergenic | 40.0% |
| AGGGTCAATATTGCAGGTAT+CGG | + | chr1_2:45554980-45554999 | None:intergenic | 40.0% | |
| TACCTGCAATATTGACCCTA+AGG | - | chr1_2:45554981-45555000 | Msa0072530:intron | 40.0% | |
| AACCTTAGGGTCAATATTGC+AGG | + | chr1_2:45554986-45555005 | None:intergenic | 40.0% | |
| GGTACATTACCACAAACCTT+AGG | + | chr1_2:45555000-45555019 | None:intergenic | 40.0% | |
| AGCAAAATACAAGACCCTAG+AGG | + | chr1_2:45555227-45555246 | None:intergenic | 40.0% | |
| CTTCAGGTAGCAATTGTTGT+TGG | - | chr1_2:45555289-45555308 | Msa0072530:CDS | 40.0% | |
| ! | ATTTCTTCTGTGGTGATGCA+TGG | - | chr1_2:45555320-45555339 | Msa0072530:CDS | 40.0% |
| ! | TTTCTTCTGTGGTGATGCAT+GGG | - | chr1_2:45555321-45555340 | Msa0072530:CDS | 40.0% |
| AGATGTACTGCATACCAAGT+TGG | - | chr1_2:45555364-45555383 | Msa0072530:intron | 40.0% | |
| GATGTACTGCATACCAAGTT+GGG | - | chr1_2:45555365-45555384 | Msa0072530:intron | 40.0% | |
| TGGATCACCCATTTGTAATC+AGG | + | chr1_2:45555508-45555527 | None:intergenic | 40.0% | |
| GATTACAAATGGGTGATCCA+AGG | - | chr1_2:45555508-45555527 | Msa0072530:intron | 40.0% | |
| !! | GGAGTGAACTTTGACTTGTA+TGG | - | chr1_2:45555610-45555629 | Msa0072530:intron | 40.0% |
| TTTAGGTAGGGCTGTAAATG+TGG | - | chr1_2:45555738-45555757 | Msa0072530:CDS | 40.0% | |
| CCATGTGCAATACATGAAGA+TGG | + | chr1_2:45556077-45556096 | None:intergenic | 40.0% | |
| CCATCTTCATGTATTGCACA+TGG | - | chr1_2:45556074-45556093 | Msa0072530:intron | 40.0% | |
| ! | GATATGTCGGTTGAGAAAAG+TGG | + | chr1_2:45556460-45556479 | None:intergenic | 40.0% |
| AGAGTAATAGATGATGCGGA+GGG | + | chr1_2:45556546-45556565 | None:intergenic | 40.0% | |
| AAGAGTAATAGATGATGCGG+AGG | + | chr1_2:45556547-45556566 | None:intergenic | 40.0% | |
| ! | ATATCCATGTGGTTGATGTG+GGG | + | chr1_2:45556572-45556591 | None:intergenic | 40.0% |
| GCTTGCCAAAAATATCCATG+TGG | + | chr1_2:45556583-45556602 | None:intergenic | 40.0% | |
| TTTCGAGCACATATCCTTCA+GGG | - | chr1_2:45556708-45556727 | Msa0072530:CDS | 40.0% | |
| ! | ATTTTCCTCGCAGAATGTCA+GGG | + | chr1_2:45556773-45556792 | None:intergenic | 40.0% |
| !! | TGCATCTGGTCTTTTTATGG+GGG | - | chr1_2:45556817-45556836 | Msa0072530:CDS | 40.0% |
| !!! | TCTTTTTATGGGGGTGTTTC+AGG | - | chr1_2:45556826-45556845 | Msa0072530:CDS | 40.0% |
| ACAACTGCACAAAGAAATGG+TGG | + | chr1_2:45557131-45557150 | None:intergenic | 40.0% | |
| ! | GTTAGCTTATTGCTCCAGTT+TGG | + | chr1_2:45557226-45557245 | None:intergenic | 40.0% |
| GTGGCAAGTATCCAACTTAA+TGG | + | chr1_2:45557294-45557313 | None:intergenic | 40.0% | |
| TCAGCTCTACAATTTCCTAG+TGG | + | chr1_2:45557316-45557335 | None:intergenic | 40.0% | |
| ! | TGCTTATGTTGTTTACGTGG+TGG | - | chr1_2:45557358-45557377 | Msa0072530:five_prime_UTR | 40.0% |
| ! | TGTTCGCATTTTACCGACAA+AGG | + | chr1_2:45557481-45557500 | None:intergenic | 40.0% |
| CGGTAAAATGCGAACAGATA+TGG | - | chr1_2:45557485-45557504 | Msa0072530:five_prime_UTR | 40.0% | |
| ACCCCAGGGCATGTTTATTT+GGG | + | chr1_2:45553130-45553149 | None:intergenic | 45.0% | |
| GGTGAAAGGGTTTGAAGGAA+CGG | + | chr1_2:45553281-45553300 | None:intergenic | 45.0% | |
| AAGACGGTGAAAGGGTTTGA+AGG | + | chr1_2:45553286-45553305 | None:intergenic | 45.0% | |
| AGAAGCCATGAGATTAACGG+CGG | + | chr1_2:45553311-45553330 | None:intergenic | 45.0% | |
| ! | TTTGGATTGGACTGAAGCTG+TGG | + | chr1_2:45553449-45553468 | None:intergenic | 45.0% |
| ! | AGGTGGTGATGTGTTTGGAT+TGG | + | chr1_2:45553462-45553481 | None:intergenic | 45.0% |
| ! | AAACCGGTTTCAAGCGGTAA+CGG | - | chr1_2:45553637-45553656 | Msa0072530:intron | 45.0% |
| TCTATACTCTGCTCCTACTC+CGG | + | chr1_2:45553674-45553693 | None:intergenic | 45.0% | |
| CTGAATCGAGGGAATCTAAG+AGG | - | chr1_2:45553766-45553785 | Msa0072530:intron | 45.0% | |
| GGAATCTAAGAGGAAGAGAC+TGG | - | chr1_2:45553776-45553795 | Msa0072530:intron | 45.0% | |
| CTGGGAAGAAGTAGCTTCAA+TGG | - | chr1_2:45553795-45553814 | Msa0072530:intron | 45.0% | |
| ! | TTTCTGCTAGTCATTGGCCT+TGG | - | chr1_2:45553929-45553948 | Msa0072530:CDS | 45.0% |
| !! | TTGGCCTTGGTTTAAGCAGA+TGG | - | chr1_2:45553942-45553961 | Msa0072530:CDS | 45.0% |
| TCATCATCAGCAAACTTGGC+CGG | + | chr1_2:45553991-45554010 | None:intergenic | 45.0% | |
| TGCCTAGGTGAAATTGAAGC+AGG | + | chr1_2:45554027-45554046 | None:intergenic | 45.0% | |
| ! | TGCTCCATTACTCCTTTTCC+GGG | - | chr1_2:45554385-45554404 | Msa0072530:CDS | 45.0% |
| CAATCCCGGAAAAGGAGTAA+TGG | + | chr1_2:45554392-45554411 | None:intergenic | 45.0% | |
| !! | GTAGTGTTACTTGGATGGAG+TGG | - | chr1_2:45554711-45554730 | Msa0072530:intron | 45.0% |
| ! | ATTAGTGGATCGGCACTTAC+CGG | - | chr1_2:45554952-45554971 | Msa0072530:intron | 45.0% |
| ! | CAGGTAGCAATTGTTGTTGG+AGG | - | chr1_2:45555292-45555311 | Msa0072530:CDS | 45.0% |
| GGAGGTCGTAATTTCTTCTG+TGG | - | chr1_2:45555310-45555329 | Msa0072530:CDS | 45.0% | |
| AGCTAGTTGAAGTTGGGATG+TGG | - | chr1_2:45555543-45555562 | Msa0072530:intron | 45.0% | |
| GCTAGTTGAAGTTGGGATGT+GGG | - | chr1_2:45555544-45555563 | Msa0072530:intron | 45.0% | |
| !! | ATGTGGGAAAGAGAGCATCT+TGG | - | chr1_2:45555560-45555579 | Msa0072530:intron | 45.0% |
| !! | AAAGAGAGCATCTTGGTGAC+AGG | - | chr1_2:45555567-45555586 | Msa0072530:intron | 45.0% |
| !! | GATTGGTAGTGCCAATTGCA+TGG | - | chr1_2:45555633-45555652 | Msa0072530:intron | 45.0% |
| TTTGCACTCCAATGATCCAG+AGG | + | chr1_2:45555668-45555687 | None:intergenic | 45.0% | |
| TGGATCATTGGAGTGCAAAG+AGG | - | chr1_2:45555669-45555688 | Msa0072530:intron | 45.0% | |
| ACAGTGCCAATATAACCTCC+CGG | + | chr1_2:45555780-45555799 | None:intergenic | 45.0% | |
| ATCAGCAAAGCACATCCAGT+TGG | + | chr1_2:45555826-45555845 | None:intergenic | 45.0% | |
| ! | TCAGATGTGCAACTCTAGGA+AGG | + | chr1_2:45555872-45555891 | None:intergenic | 45.0% |
| AAGGTCAGATGTGCAACTCT+AGG | + | chr1_2:45555876-45555895 | None:intergenic | 45.0% | |
| ! | CGTTTGCTGAACCGTACAAT+AGG | - | chr1_2:45556362-45556381 | Msa0072530:intron | 45.0% |
| CTGAACCGTACAATAGGCAA+CGG | - | chr1_2:45556368-45556387 | Msa0072530:intron | 45.0% | |
| TGAACCGTACAATAGGCAAC+GGG | - | chr1_2:45556369-45556388 | Msa0072530:intron | 45.0% | |
| TCCTTTCTCAAGATGCCTGA+TGG | + | chr1_2:45556395-45556414 | None:intergenic | 45.0% | |
| ! | TATCCATGTGGTTGATGTGG+GGG | + | chr1_2:45556571-45556590 | None:intergenic | 45.0% |
| CATCTACGTTGGTACCTTTG+AGG | + | chr1_2:45556651-45556670 | None:intergenic | 45.0% | |
| !! | CTCAAAGGTACCAACGTAGA+TGG | - | chr1_2:45556649-45556668 | Msa0072530:CDS | 45.0% |
| GTCATATACGCCATCTACGT+TGG | + | chr1_2:45556662-45556681 | None:intergenic | 45.0% | |
| CTTTCGAGCACATATCCTTC+AGG | - | chr1_2:45556707-45556726 | Msa0072530:CDS | 45.0% | |
| ! | CATTTTCCTCGCAGAATGTC+AGG | + | chr1_2:45556774-45556793 | None:intergenic | 45.0% |
| ATTCTCCATGTTCCTTGCAG+TGG | - | chr1_2:45556895-45556914 | Msa0072530:CDS | 45.0% | |
| GAAATCCACTGCAAGGAACA+TGG | + | chr1_2:45556903-45556922 | None:intergenic | 45.0% | |
| GCTTTGTGTGGAGAACAAGT+TGG | - | chr1_2:45557188-45557207 | Msa0072530:CDS | 45.0% | |
| GGCACACTTATTGACCAAAC+TGG | - | chr1_2:45557209-45557228 | Msa0072530:CDS | 45.0% | |
| GCTCTACAATTTCCTAGTGG+TGG | + | chr1_2:45557313-45557332 | None:intergenic | 45.0% | |
| TAGCAGTAGCCTTCCTTTGT+CGG | - | chr1_2:45557465-45557484 | Msa0072530:five_prime_UTR | 45.0% | |
| ! | CGCATTTTACCGACAAAGGA+AGG | + | chr1_2:45557477-45557496 | None:intergenic | 45.0% |
| TGGCCCAAATAAACATGCCC+TGG | - | chr1_2:45553124-45553143 | Msa0072530:three_prime_UTR | 50.0% | |
| GGCCCAAATAAACATGCCCT+GGG | - | chr1_2:45553125-45553144 | Msa0072530:three_prime_UTR | 50.0% | |
| GCCCAAATAAACATGCCCTG+GGG | - | chr1_2:45553126-45553145 | Msa0072530:three_prime_UTR | 50.0% | |
| GACCCCAGGGCATGTTTATT+TGG | + | chr1_2:45553131-45553150 | None:intergenic | 50.0% | |
| TTACCACGTAGGAGTGATGG+AGG | + | chr1_2:45553153-45553172 | None:intergenic | 50.0% | |
| GAGATTAACGGCGGAGAAGA+CGG | + | chr1_2:45553302-45553321 | None:intergenic | 50.0% | |
| CTTCTCCGCCGTTAATCTCA+TGG | - | chr1_2:45553303-45553322 | Msa0072530:three_prime_UTR | 50.0% | |
| AGTGGTGGTTGTTATCGTCG+TGG | + | chr1_2:45553363-45553382 | None:intergenic | 50.0% | |
| AATCCATTCGACGATGACGC+TGG | - | chr1_2:45553535-45553554 | Msa0072530:intron | 50.0% | |
| TGTGATGCAACGACGTCGTA+TGG | - | chr1_2:45553595-45553614 | Msa0072530:intron | 50.0% | |
| ! | CGGTCAAAACCGGTTTCAAG+CGG | - | chr1_2:45553631-45553650 | Msa0072530:intron | 50.0% |
| CACGAACATCTGACGTTGTC+CGG | + | chr1_2:45554333-45554352 | None:intergenic | 50.0% | |
| GTAAGTCCTGGGTTCAATCC+CGG | + | chr1_2:45554406-45554425 | None:intergenic | 50.0% | |
| GTTTACTTGACCTCCACTGC+TGG | + | chr1_2:45554878-45554897 | None:intergenic | 50.0% | |
| GAACAACTCTCCGCCATCTA+AGG | + | chr1_2:45554927-45554946 | None:intergenic | 50.0% | |
| ACTGTACCTCCACACCAAGA+CGG | + | chr1_2:45555192-45555211 | None:intergenic | 50.0% | |
| GATGCATGGGTAACTGCAAC+AGG | - | chr1_2:45555334-45555353 | Msa0072530:CDS | 50.0% | |
| AACTGCCTCCTCTGGATCAT+TGG | - | chr1_2:45555657-45555676 | Msa0072530:intron | 50.0% | |
| AGGGCTGTAAATGTGGAGTG+AGG | - | chr1_2:45555745-45555764 | Msa0072530:CDS | 50.0% | |
| GAACCACCGGGAGGTTATAT+TGG | - | chr1_2:45555771-45555790 | Msa0072530:CDS | 50.0% | |
| ATGGCCCGTTGCCTATTGTA+CGG | + | chr1_2:45556376-45556395 | None:intergenic | 50.0% | |
| GCCATCAGGCATCTTGAGAA+AGG | - | chr1_2:45556391-45556410 | Msa0072530:intron | 50.0% | |
| CCGAAGAGCAGCAGATATGT+CGG | + | chr1_2:45556473-45556492 | None:intergenic | 50.0% | |
| CCGACATATCTGCTGCTCTT+CGG | - | chr1_2:45556470-45556489 | Msa0072530:intron | 50.0% | |
| CGACATATCTGCTGCTCTTC+GGG | - | chr1_2:45556471-45556490 | Msa0072530:intron | 50.0% | |
| TTTCCCCCACATCAACCACA+TGG | - | chr1_2:45556565-45556584 | Msa0072530:intron | 50.0% | |
| CTGCTCTGCAGTTAATGCTC+AGG | - | chr1_2:45556621-45556640 | Msa0072530:CDS | 50.0% | |
| AATGCTCAGGCTGTCCTCAA+AGG | - | chr1_2:45556634-45556653 | Msa0072530:CDS | 50.0% | |
| TCTAGACACTAGCTCCCTGA+AGG | + | chr1_2:45556725-45556744 | None:intergenic | 50.0% | |
| TTCAGGGAGCTAGTGTCTAG+AGG | - | chr1_2:45556724-45556743 | Msa0072530:CDS | 50.0% | |
| !! | GTCTAGAGGTGTCACCTCTA+TGG | - | chr1_2:45556738-45556757 | Msa0072530:CDS | 50.0% |
| CAGGGCTGACATATCCATAG+AGG | + | chr1_2:45556755-45556774 | None:intergenic | 50.0% | |
| TGCGAGGAAAATGCCATTCC+TGG | - | chr1_2:45556781-45556800 | Msa0072530:CDS | 50.0% | |
| GTTGGATACTTGCCACCACT+AGG | - | chr1_2:45557298-45557317 | Msa0072530:CDS | 50.0% | |
| GGGTTTGAAGGAACGGCGTT+AGG | + | chr1_2:45553274-45553293 | None:intergenic | 55.0% | |
| GGTGGTTGTTATCGTCGTGG+AGG | + | chr1_2:45553360-45553379 | None:intergenic | 55.0% | |
| ! | AGAAGTGGTGGTGAGAGTGG+TGG | + | chr1_2:45553426-45553445 | None:intergenic | 55.0% |
| ! | TGGAGAAGTGGTGGTGAGAG+TGG | + | chr1_2:45553429-45553448 | None:intergenic | 55.0% |
| CTGAAGCTGTGGAGAAGTGG+TGG | + | chr1_2:45553438-45553457 | None:intergenic | 55.0% | |
| GGACTGAAGCTGTGGAGAAG+TGG | + | chr1_2:45553441-45553460 | None:intergenic | 55.0% | |
| ! | GACGGAGGTGGTGATGTGTT+TGG | + | chr1_2:45553467-45553486 | None:intergenic | 55.0% |
| GGAGACGACACCGATGACTA+CGG | - | chr1_2:45553511-45553530 | Msa0072530:intron | 55.0% | |
| CTACCAGCGTCATCGTCGAA+TGG | + | chr1_2:45553541-45553560 | None:intergenic | 55.0% | |
| CCACCGTTACCGCTTGAAAC+CGG | + | chr1_2:45553643-45553662 | None:intergenic | 55.0% | |
| ! | GTTTCAAGCGGTAACGGTGG+AGG | - | chr1_2:45553643-45553662 | Msa0072530:intron | 55.0% |
| CCTGGGTTCAATCCCGGAAA+AGG | + | chr1_2:45554400-45554419 | None:intergenic | 55.0% | |
| ! | CCTTTTCCGGGATTGAACCC+AGG | - | chr1_2:45554397-45554416 | Msa0072530:intron | 55.0% |
| GTTGCAATGGCTTCCCGTCT+TGG | - | chr1_2:45555175-45555194 | Msa0072530:intron | 55.0% | |
| AATGGCTTCCCGTCTTGGTG+TGG | - | chr1_2:45555180-45555199 | Msa0072530:intron | 55.0% | |
| CTGTACCTCCACACCAAGAC+GGG | + | chr1_2:45555191-45555210 | None:intergenic | 55.0% | |
| ! | AGCATCTTGGTGACAGGCCA+GGG | - | chr1_2:45555573-45555592 | Msa0072530:intron | 55.0% |
| CAAAGTTCACTCCCCAGCTG+TGG | + | chr1_2:45555603-45555622 | None:intergenic | 55.0% | |
| GGAGGCAGTTGCCATGCAAT+TGG | + | chr1_2:45555647-45555666 | None:intergenic | 55.0% | |
| GCACTCCAATGATCCAGAGG+AGG | + | chr1_2:45555665-45555684 | None:intergenic | 55.0% | |
| TGGAGTGAGGTCAGAACCAC+CGG | - | chr1_2:45555758-45555777 | Msa0072530:CDS | 55.0% | |
| GTGCCAATATAACCTCCCGG+TGG | + | chr1_2:45555777-45555796 | None:intergenic | 55.0% | |
| ACAATAGGCAACGGGCCATC+AGG | - | chr1_2:45556377-45556396 | Msa0072530:intron | 55.0% | |
| !!! | GGTGGCATTGGTTTTGGTGC+TGG | - | chr1_2:45556430-45556449 | Msa0072530:intron | 55.0% |
| ! | AGGAGTGATGGAGGACCCCA+GGG | + | chr1_2:45553144-45553163 | None:intergenic | 60.0% |
| ! | TAGGAGTGATGGAGGACCCC+AGG | + | chr1_2:45553145-45553164 | None:intergenic | 60.0% |
| GGTCCTCCATCACTCCTACG+TGG | - | chr1_2:45553147-45553166 | Msa0072530:three_prime_UTR | 60.0% | |
| CGGCGGAGAAGACGGTGAAA+GGG | + | chr1_2:45553294-45553313 | None:intergenic | 60.0% | |
| ACGGCGGAGAAGACGGTGAA+AGG | + | chr1_2:45553295-45553314 | None:intergenic | 60.0% | |
| !! | AGGTTTGGTGGAGGTGGTGG+TGG | + | chr1_2:45553390-45553409 | None:intergenic | 60.0% |
| !! | CGAAGGTTTGGTGGAGGTGG+TGG | + | chr1_2:45553393-45553412 | None:intergenic | 60.0% |
| !! | GTGCGAAGGTTTGGTGGAGG+TGG | + | chr1_2:45553396-45553415 | None:intergenic | 60.0% |
| !! | GAGGTGCGAAGGTTTGGTGG+AGG | + | chr1_2:45553399-45553418 | None:intergenic | 60.0% |
| GGTGAGGTGCGAAGGTTTGG+TGG | + | chr1_2:45553402-45553421 | None:intergenic | 60.0% | |
| GGTGGTGAGGTGCGAAGGTT+TGG | + | chr1_2:45553405-45553424 | None:intergenic | 60.0% | |
| !! | TGGTGAGAGTGGTGGTGGTG+AGG | + | chr1_2:45553418-45553437 | None:intergenic | 60.0% |
| ! | AGTGGTGGTGAGAGTGGTGG+TGG | + | chr1_2:45553423-45553442 | None:intergenic | 60.0% |
| ! | CCGGTTTCAAGCGGTAACGG+TGG | - | chr1_2:45553640-45553659 | Msa0072530:intron | 60.0% |
| ! | GAGCATCTTGGTGACAGGCC+AGG | - | chr1_2:45555572-45555591 | Msa0072530:intron | 60.0% |
| ! | TCTTGGTGACAGGCCAGGGA+AGG | - | chr1_2:45555577-45555596 | Msa0072530:intron | 60.0% |
| TGCATGGCAACTGCCTCCTC+TGG | - | chr1_2:45555649-45555668 | Msa0072530:intron | 60.0% | |
| GGAGTGAGGTCAGAACCACC+GGG | - | chr1_2:45555759-45555778 | Msa0072530:CDS | 60.0% | |
| TGCTGCTCTTCGGGCTTCAG+AGG | - | chr1_2:45556480-45556499 | Msa0072530:intron | 60.0% | |
| GCTGCTCTTCGGGCTTCAGA+GGG | - | chr1_2:45556481-45556500 | Msa0072530:intron | 60.0% | |
| GTCAGCCCTGACATTCTGCG+AGG | - | chr1_2:45556765-45556784 | Msa0072530:CDS | 60.0% | |
| !! | GGTGGTGGTGGTGAGAGTGG+TGG | + | chr1_2:45553378-45553397 | None:intergenic | 65.0% |
| !! | GGAGGTGGTGGTGGTGAGAG+TGG | + | chr1_2:45553381-45553400 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGAGGTGCGA+AGG | + | chr1_2:45553410-45553429 | None:intergenic | 65.0% |
| ! | GGTGTCGTCTCCGTCGTCGT+CGG | + | chr1_2:45553503-45553522 | None:intergenic | 65.0% |
| ! | GGTAACGGTGGAGGAAGCGC+CGG | - | chr1_2:45553652-45553671 | Msa0072530:intron | 65.0% |
| GGAGTGGCTACGTCCAGCAG+TGG | - | chr1_2:45554862-45554881 | Msa0072530:intron | 65.0% | |
| GTGGCTACGTCCAGCAGTGG+AGG | - | chr1_2:45554865-45554884 | Msa0072530:intron | 65.0% | |
| ! | GGCTTCCCGTCTTGGTGTGG+AGG | - | chr1_2:45555183-45555202 | Msa0072530:intron | 65.0% |
| GTGAGGTCAGAACCACCGGG+AGG | - | chr1_2:45555762-45555781 | Msa0072530:CDS | 65.0% | |
| GTCTCCGTCGTCGTCGGCGA+CGG | + | chr1_2:45553497-45553516 | None:intergenic | 70.0% | |
| !! | GGTGGAGGAAGCGCCGGAGT+AGG | - | chr1_2:45553658-45553677 | Msa0072530:intron | 70.0% |
| AGGCCAGGGAAGGCCACAGC+TGG | - | chr1_2:45555587-45555606 | Msa0072530:intron | 70.0% | |
| GGCCAGGGAAGGCCACAGCT+GGG | - | chr1_2:45555588-45555607 | Msa0072530:intron | 70.0% | |
| GCCAGGGAAGGCCACAGCTG+GGG | - | chr1_2:45555589-45555608 | Msa0072530:intron | 70.0% | |
| TCCCCAGCTGTGGCCTTCCC+TGG | + | chr1_2:45555593-45555612 | None:intergenic | 70.0% | |
| TCCGTCGTCGTCGGCGACGG+CGG | + | chr1_2:45553494-45553513 | None:intergenic | 75.0% | |
| ! | GACGGCGGCGGAGACGGAGG+TGG | + | chr1_2:45553479-45553498 | None:intergenic | 80.0% |
| ! | GTCGGCGACGGCGGCGGAGA+CGG | + | chr1_2:45553485-45553504 | None:intergenic | 80.0% |
| ! | GTCGTCGTCGGCGACGGCGG+CGG | + | chr1_2:45553491-45553510 | None:intergenic | 80.0% |
| ! | GCCGCCGTCGCCGACGACGA+CGG | - | chr1_2:45553490-45553509 | Msa0072530:CDS | 80.0% |
| ! | GGCGACGGCGGCGGAGACGG+AGG | + | chr1_2:45553482-45553501 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 45553122 | 45557552 | 45553122 | ID=Msa0072530;Name=Msa0072530 |
| chr1_2 | mRNA | 45553122 | 45557552 | 45553122 | ID=Msa0072530-mRNA-1;Parent=Msa0072530;Name=Msa0072530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=200|1|1|1|1|1|7|308|509 |
| chr1_2 | exon | 45553122 | 45553527 | 45553122 | ID=Msa0072530-mRNA-1:exon:13751;Parent=Msa0072530-mRNA-1 |
| chr1_2 | exon | 45553872 | 45554042 | 45553872 | ID=Msa0072530-mRNA-1:exon:13750;Parent=Msa0072530-mRNA-1 |
| chr1_2 | exon | 45554172 | 45554407 | 45554172 | ID=Msa0072530-mRNA-1:exon:13749;Parent=Msa0072530-mRNA-1 |
| chr1_2 | exon | 45555288 | 45555379 | 45555288 | ID=Msa0072530-mRNA-1:exon:13748;Parent=Msa0072530-mRNA-1 |
| chr1_2 | exon | 45555470 | 45555523 | 45555470 | ID=Msa0072530-mRNA-1:exon:13747;Parent=Msa0072530-mRNA-1 |
| chr1_2 | exon | 45555672 | 45555816 | 45555672 | ID=Msa0072530-mRNA-1:exon:13746;Parent=Msa0072530-mRNA-1 |
| chr1_2 | exon | 45556619 | 45557552 | 45556619 | ID=Msa0072530-mRNA-1:exon:13745;Parent=Msa0072530-mRNA-1 |
| chr1_2 | five_prime_UTR | 45557353 | 45557552 | 45557353 | ID=Msa0072530-mRNA-1:five_prime_utr;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45556619 | 45557352 | 45556619 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45555672 | 45555816 | 45555672 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45555470 | 45555523 | 45555470 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45555288 | 45555379 | 45555288 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45554172 | 45554407 | 45554172 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45553872 | 45554042 | 45553872 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | CDS | 45553430 | 45553527 | 45553430 | ID=Msa0072530-mRNA-1:cds;Parent=Msa0072530-mRNA-1 |
| chr1_2 | three_prime_UTR | 45553122 | 45553429 | 45553122 | ID=Msa0072530-mRNA-1:three_prime_utr;Parent=Msa0072530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
