Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121990 | XP_013468234.1 | 94.579 | 535 | 10 | 2 | 1 | 532 | 1 | 519 | 0.0 | 1011 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121990 | sp|F4KF65|IMPA9_ARATH | 70.654 | 535 | 138 | 2 | 1 | 532 | 1 | 519 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121990 | A0A072VKX7 | 94.579 | 535 | 10 | 2 | 1 | 532 | 1 | 519 | 0.0 | 1011 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0121990 | Msa0185900 | 0.835495 | 1.623447e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121990 | MtrunA17_Chr1g0181541 | 94.579 | 535 | 10 | 2 | 1 | 532 | 1 | 519 | 0.0 | 1011 |
| Msa0121990 | MtrunA17_Chr2g0294881 | 29.236 | 537 | 314 | 14 | 7 | 527 | 12 | 498 | 3.36e-56 | 196 |
| Msa0121990 | MtrunA17_Chr7g0271871 | 29.291 | 536 | 314 | 16 | 7 | 527 | 14 | 499 | 5.82e-55 | 193 |
| Msa0121990 | MtrunA17_Chr4g0068051 | 29.104 | 536 | 312 | 16 | 7 | 527 | 20 | 502 | 2.00e-53 | 189 |
| Msa0121990 | MtrunA17_Chr1g0192541 | 28.678 | 537 | 316 | 15 | 7 | 527 | 14 | 499 | 1.17e-52 | 187 |
| Msa0121990 | MtrunA17_Chr4g0074371 | 29.596 | 446 | 264 | 10 | 96 | 527 | 12 | 421 | 5.55e-51 | 180 |
| Msa0121990 | MtrunA17_Chr4g0074081 | 28.747 | 487 | 249 | 13 | 96 | 527 | 12 | 455 | 3.17e-40 | 151 |
| Msa0121990 | MtrunA17_Chr8g0346871 | 28.738 | 428 | 255 | 10 | 116 | 529 | 15 | 406 | 3.14e-39 | 148 |
| Msa0121990 | MtrunA17_Chr4g0075691 | 27.130 | 446 | 276 | 10 | 96 | 527 | 9 | 419 | 3.58e-38 | 146 |
| Msa0121990 | MtrunA17_Chr4g0075701 | 26.407 | 462 | 290 | 10 | 79 | 526 | 6 | 431 | 2.16e-37 | 144 |
| Msa0121990 | MtrunA17_Chr7g0271821 | 27.191 | 445 | 269 | 14 | 100 | 527 | 144 | 550 | 4.52e-33 | 132 |
| Msa0121990 | MtrunA17_Chr7g0272761 | 26.061 | 495 | 271 | 17 | 47 | 527 | 75 | 488 | 1.92e-28 | 118 |
| Msa0121990 | MtrunA17_Chr7g0271831 | 26.773 | 437 | 263 | 13 | 100 | 527 | 16 | 404 | 5.68e-26 | 110 |
| Msa0121990 | MtrunA17_Chr1g0174791 | 25.552 | 317 | 191 | 9 | 220 | 524 | 9 | 292 | 5.85e-22 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121990 | AT5G03070.1 | 70.654 | 535 | 138 | 2 | 1 | 532 | 1 | 519 | 0.0 | 751 |
| Msa0121990 | AT1G02690.1 | 29.851 | 536 | 315 | 15 | 7 | 527 | 12 | 501 | 1.68e-54 | 192 |
| Msa0121990 | AT1G02690.2 | 29.851 | 536 | 316 | 15 | 7 | 527 | 12 | 502 | 2.06e-54 | 192 |
| Msa0121990 | AT4G02150.1 | 27.747 | 537 | 318 | 14 | 7 | 524 | 12 | 497 | 1.38e-52 | 187 |
| Msa0121990 | AT3G06720.1 | 28.493 | 544 | 308 | 15 | 7 | 527 | 12 | 497 | 6.04e-52 | 185 |
| Msa0121990 | AT3G06720.2 | 28.493 | 544 | 308 | 15 | 7 | 527 | 12 | 497 | 6.04e-52 | 185 |
| Msa0121990 | AT1G09270.2 | 29.213 | 534 | 299 | 18 | 16 | 524 | 22 | 501 | 9.81e-52 | 185 |
| Msa0121990 | AT1G09270.1 | 29.213 | 534 | 299 | 18 | 16 | 524 | 22 | 501 | 9.81e-52 | 185 |
| Msa0121990 | AT1G09270.3 | 30.337 | 445 | 258 | 14 | 95 | 524 | 12 | 419 | 4.64e-51 | 181 |
| Msa0121990 | AT4G16143.2 | 28.942 | 539 | 317 | 16 | 7 | 527 | 12 | 502 | 1.72e-50 | 181 |
| Msa0121990 | AT4G16143.1 | 28.942 | 539 | 317 | 16 | 7 | 527 | 12 | 502 | 1.72e-50 | 181 |
| Msa0121990 | AT5G49310.1 | 27.083 | 528 | 323 | 16 | 7 | 523 | 12 | 488 | 1.04e-46 | 171 |
| Msa0121990 | AT4G02150.2 | 30.140 | 428 | 250 | 11 | 7 | 426 | 12 | 398 | 2.98e-45 | 164 |
| Msa0121990 | AT3G05720.1 | 27.974 | 454 | 259 | 15 | 98 | 524 | 77 | 489 | 9.40e-41 | 154 |
| Msa0121990 | AT3G05720.2 | 27.974 | 454 | 259 | 15 | 98 | 524 | 77 | 489 | 9.40e-41 | 154 |
| Msa0121990 | AT5G52000.1 | 25.747 | 435 | 271 | 13 | 100 | 524 | 29 | 421 | 6.70e-28 | 116 |
Find 131 sgRNAs with CRISPR-Local
Find 420 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTAGTTGACAAGTATTT+TGG | 0.155387 | 1_3:-48293443 | Msa0121990:CDS |
| TTTATAACGGTACATGAAAA+TGG | 0.169620 | 1_3:+48299151 | None:intergenic |
| TGATGAAGAACAATCTATTT+TGG | 0.188365 | 1_3:-48298743 | Msa0121990:CDS |
| AAGGAAGTTGCTTACATATT+AGG | 0.201164 | 1_3:-48293896 | Msa0121990:CDS |
| CTGGTTTCACTTGTTGAAAA+AGG | 0.257592 | 1_3:-48293815 | Msa0121990:CDS |
| TCTTCTTGTTCTACAAGCTT+TGG | 0.289124 | 1_3:+48293530 | None:intergenic |
| CTTCTTGTTCTACAAGCTTT+GGG | 0.294666 | 1_3:+48293531 | None:intergenic |
| GTGTTTGGAGACGCTGAAAA+AGG | 0.302316 | 1_3:+48299109 | None:intergenic |
| CGTTTCACCTTCTTCTTCAA+TGG | 0.303674 | 1_3:-48299079 | Msa0121990:exon |
| CTTTGCTTATTGCTCACCTT+GGG | 0.308315 | 1_3:-48296592 | Msa0121990:CDS |
| ATAAGTTCGTTAGCAGCTTT+AGG | 0.319153 | 1_3:+48295842 | None:intergenic |
| AGTGTACCTGATGATTTAAT+AGG | 0.322997 | 1_3:+48299033 | None:intergenic |
| CTAGTTCAGTGTCTTTCATT+TGG | 0.323090 | 1_3:-48296819 | Msa0121990:CDS |
| TCGTTAGCAGCTTTAGGATT+TGG | 0.327090 | 1_3:+48295848 | None:intergenic |
| GTACCTGGACTTGAAGTTAC+AGG | 0.329764 | 1_3:-48294267 | Msa0121990:CDS |
| TTCCATTGGGCATCCCTCTC+AGG | 0.332933 | 1_3:+48293558 | None:intergenic |
| AGGTCAATAGAATCTGTATT+CGG | 0.345718 | 1_3:-48293272 | Msa0121990:three_prime_UTR |
| CAGTTTGCAATTAATGATTC+CGG | 0.348278 | 1_3:-48294459 | Msa0121990:intron |
| AGCTTTGGGCCCTTTCCATT+GGG | 0.361441 | 1_3:+48293545 | None:intergenic |
| AAGCTTTGGGCCCTTTCCAT+TGG | 0.380490 | 1_3:+48293544 | None:intergenic |
| TTTGGAGTCTCAGACTTCAT+TGG | 0.383796 | 1_3:-48298725 | Msa0121990:CDS |
| AACTGTTAGAACAGCGGCCT+GGG | 0.384150 | 1_3:-48296146 | Msa0121990:CDS |
| TGCGTTTAGACCTGTTCATC+TGG | 0.386763 | 1_3:+48296792 | None:intergenic |
| ATTTGGTTCTCCAGATGAAC+AGG | 0.388197 | 1_3:-48296802 | Msa0121990:intron |
| TGAAAGACACTGAACTAGTA+TGG | 0.390710 | 1_3:+48296824 | None:intergenic |
| CAAGCACACTGCTCAGCAAC+AGG | 0.395722 | 1_3:+48296274 | None:intergenic |
| CCTTTGCTTATTGCTCACCT+TGG | 0.403958 | 1_3:-48296593 | Msa0121990:CDS |
| AGTTTAGGTAATCTCGTTGC+TGG | 0.405199 | 1_3:-48294318 | Msa0121990:CDS |
| TTCTTATGCAGGAAGCAGCC+TGG | 0.405306 | 1_3:-48294030 | Msa0121990:intron |
| AAATCTGATCCTGGAGCATC+TGG | 0.405497 | 1_3:-48293834 | Msa0121990:CDS |
| GGCTTTGTCTAATCTAATCA+AGG | 0.406769 | 1_3:-48296125 | Msa0121990:intron |
| TGTTGCTGAGCAGTGTGCTT+GGG | 0.409983 | 1_3:-48296272 | Msa0121990:CDS |
| AGGAATGTTCTTCTAATTCA+AGG | 0.411220 | 1_3:-48296214 | Msa0121990:CDS |
| GGTATCTCGTCGCCTTTAGT+TGG | 0.413181 | 1_3:+48293857 | None:intergenic |
| AGAGAAGGGAATCGTTGGTT+CGG | 0.414285 | 1_3:-48298837 | Msa0121990:CDS |
| CTGTTGCTGAGCAGTGTGCT+TGG | 0.417330 | 1_3:-48296273 | Msa0121990:CDS |
| CAACTGTTAGAACAGCGGCC+TGG | 0.418690 | 1_3:-48296147 | Msa0121990:CDS |
| AACGAACTTATACGTGTTGA+TGG | 0.421049 | 1_3:-48295830 | Msa0121990:CDS |
| AGATGCTCCAGGATCAGATT+TGG | 0.432126 | 1_3:+48293836 | None:intergenic |
| GATATTGAAGCTGCCAAGCT+AGG | 0.432212 | 1_3:-48293755 | Msa0121990:CDS |
| TTATAACGGTACATGAAAAT+GGG | 0.433493 | 1_3:+48299152 | None:intergenic |
| TGCAGTTGCTTGAAGCTGCT+TGG | 0.439775 | 1_3:-48296676 | Msa0121990:intron |
| GGTCAATAGAATCTGTATTC+GGG | 0.442664 | 1_3:-48293271 | Msa0121990:three_prime_UTR |
| GCTTTAACAGCAGACTCAAC+AGG | 0.444128 | 1_3:+48296858 | None:intergenic |
| TGGCCGATCCTGCCAACAAA+AGG | 0.447342 | 1_3:-48299059 | Msa0121990:CDS |
| GTGAAACGAATGCAAGTGTT+TGG | 0.450903 | 1_3:+48299094 | None:intergenic |
| GAGAAGGGAATCGTTGGTTC+GGG | 0.463219 | 1_3:-48298836 | Msa0121990:CDS |
| ATTTGCGTTGCTCCAACTAA+AGG | 0.463292 | 1_3:-48293869 | Msa0121990:CDS |
| GTGTACCTGATGATTTAATA+GGG | 0.466167 | 1_3:+48299034 | None:intergenic |
| TGTCTTACAAATATTGCTGC+AGG | 0.471941 | 1_3:-48296653 | Msa0121990:CDS |
| ACTTATGCTGTTCTTGTACC+TGG | 0.472062 | 1_3:-48294282 | Msa0121990:CDS |
| TCTTATGCAGGAAGCAGCCT+GGG | 0.472310 | 1_3:-48294029 | Msa0121990:intron |
| AGGGACCCTATTAAATCATC+AGG | 0.474220 | 1_3:-48299039 | Msa0121990:intron |
| AAATGAAGACGTGAGAACTA+TGG | 0.477955 | 1_3:-48293471 | Msa0121990:CDS |
| GAGCAGTGTGCTTGGGCACT+AGG | 0.480061 | 1_3:-48296265 | Msa0121990:CDS |
| GTTGAGTCTGCTGTTAAAGC+TGG | 0.480604 | 1_3:-48296855 | Msa0121990:CDS |
| GTAAACGCCTTAATTCTTGA+AGG | 0.484486 | 1_3:+48296901 | None:intergenic |
| TCATTGGTCTTGTGATAGAC+TGG | 0.491016 | 1_3:-48293201 | Msa0121990:three_prime_UTR |
| AGAGGGATGCCCAATGGAAA+GGG | 0.491824 | 1_3:-48293554 | Msa0121990:CDS |
| CATTCTTGCAAGAGGTACTA+AGG | 0.496077 | 1_3:+48296189 | None:intergenic |
| CGACAACTTGCAGTTACAGT+TGG | 0.497834 | 1_3:-48298865 | Msa0121990:CDS |
| CTAACAGTTGAACGTCTGTA+TGG | 0.500439 | 1_3:+48296160 | None:intergenic |
| GACAACTTGCAGTTACAGTT+GGG | 0.500791 | 1_3:-48298864 | Msa0121990:CDS |
| GTGAAACTGAAATCTTTCCA+TGG | 0.506366 | 1_3:+48293496 | None:intergenic |
| TAGGTGCCCTTCAAGAATTA+AGG | 0.508329 | 1_3:-48296908 | Msa0121990:CDS |
| GCAAAACGACTTTGTAGAGT+TGG | 0.512112 | 1_3:-48298814 | Msa0121990:CDS |
| AGGGCTTCAGTTTATAGAGC+TGG | 0.513753 | 1_3:-48293735 | Msa0121990:intron |
| AAGCTTGTAGAACAAGAAGA+TGG | 0.514390 | 1_3:-48293527 | Msa0121990:CDS |
| GCAATAAGCAAAGGCAATGC+AGG | 0.520043 | 1_3:+48296602 | None:intergenic |
| CGAGATACCAAATCTGATCC+TGG | 0.525748 | 1_3:-48293843 | Msa0121990:CDS |
| TATACGTGTTGATGGAGTAT+TGG | 0.529161 | 1_3:-48295822 | Msa0121990:CDS |
| AAATTTAGCTACCACCATGC+TGG | 0.529346 | 1_3:-48294531 | Msa0121990:CDS |
| GGAATGTTCTTCTAATTCAA+GGG | 0.530928 | 1_3:-48296213 | Msa0121990:CDS |
| TACAGTTGGGAAAGAGAGAA+GGG | 0.532165 | 1_3:-48298851 | Msa0121990:CDS |
| ATATTGAAGCTGCCAAGCTA+GGG | 0.532211 | 1_3:-48293754 | Msa0121990:CDS |
| TATAAACTGAAGCCCTAGCT+TGG | 0.533958 | 1_3:+48293742 | None:intergenic |
| GAGAGGGATGCCCAATGGAA+AGG | 0.535122 | 1_3:-48293555 | Msa0121990:CDS |
| TTTGCTTATTGCTCACCTTG+GGG | 0.539936 | 1_3:-48296591 | Msa0121990:CDS |
| AGAAGATGGGATTGAAGCCA+TGG | 0.541772 | 1_3:-48293513 | Msa0121990:CDS |
| GGCCGATCCTGCCAACAAAA+GGG | 0.549953 | 1_3:-48299058 | Msa0121990:CDS |
| AATCAGCTACTGAAGTAGCA+TGG | 0.551163 | 1_3:-48294580 | Msa0121990:CDS |
| CAAGAACAGCATAAGTTGCA+TGG | 0.554473 | 1_3:+48294289 | None:intergenic |
| GGCTGAATATTCTTCATCAA+AGG | 0.554559 | 1_3:-48293292 | Msa0121990:three_prime_UTR |
| AATCTGTATTCGGGATTGAG+AGG | 0.557646 | 1_3:-48293262 | Msa0121990:three_prime_UTR |
| TTGCTTATTGCTCACCTTGG+GGG | 0.560167 | 1_3:-48296590 | Msa0121990:intron |
| TTACAGTTGGGAAAGAGAGA+AGG | 0.563246 | 1_3:-48298852 | Msa0121990:CDS |
| GTGCTGTCTAATATAGCTGC+TGG | 0.563333 | 1_3:-48294007 | Msa0121990:CDS |
| CTAACCAAATCAATAAAACC+TGG | 0.564282 | 1_3:+48293785 | None:intergenic |
| CGCCTCGTTTGATATAAGAA+AGG | 0.566448 | 1_3:-48293915 | Msa0121990:CDS |
| AAGAACAGCATAAGTTGCAT+GGG | 0.568828 | 1_3:+48294290 | None:intergenic |
| TGAACACAGGGTCTTGAAGA+AGG | 0.570066 | 1_3:-48294109 | Msa0121990:intron |
| ATCAGCTACTGAAGTAGCAT+GGG | 0.577005 | 1_3:-48294579 | Msa0121990:CDS |
| GGATCGGCCATTGAAGAAGA+AGG | 0.580847 | 1_3:+48299072 | None:intergenic |
| TTGTGTCTGTAGGTCCTGAG+AGG | 0.583904 | 1_3:-48293572 | Msa0121990:intron |
| GAAAGAGAGAAGGGAATCGT+TGG | 0.584793 | 1_3:-48298842 | Msa0121990:CDS |
| AGCTTGTAGAACAAGAAGAT+GGG | 0.586537 | 1_3:-48293526 | Msa0121990:CDS |
| TACGACATGGAGTTGAGGCA+AGG | 0.591144 | 1_3:+48293343 | None:intergenic |
| TAGCCTGTAACTTCAAGTCC+AGG | 0.598877 | 1_3:+48294264 | None:intergenic |
| GGTGCAGTGCAGAAAAGAGT+AGG | 0.600329 | 1_3:-48296927 | Msa0121990:CDS |
| ATGTCTGAATAGTGAACACA+GGG | 0.610379 | 1_3:-48294121 | Msa0121990:CDS |
| TGCTTGGGCACTAGGAAATG+TGG | 0.610468 | 1_3:-48296257 | Msa0121990:CDS |
| TAAACGCCTTAATTCTTGAA+GGG | 0.610932 | 1_3:+48296902 | None:intergenic |
| GATTAGATTAGACAAAGCCC+AGG | 0.612593 | 1_3:+48296129 | None:intergenic |
| GTCCTGAGAGGGATGCCCAA+TGG | 0.612830 | 1_3:-48293560 | Msa0121990:CDS |
| AATGTCTGAATAGTGAACAC+AGG | 0.613426 | 1_3:-48294122 | Msa0121990:CDS |
| TACGTTACTCTTCACCAGCA+TGG | 0.615970 | 1_3:+48294517 | None:intergenic |
| CCAAGGTGAGCAATAAGCAA+AGG | 0.619253 | 1_3:+48296593 | None:intergenic |
| TGGGCACTAGGAAATGTGGC+TGG | 0.620161 | 1_3:-48296253 | Msa0121990:CDS |
| CAAGTGAAACCAGATGCTCC+AGG | 0.620229 | 1_3:+48293825 | None:intergenic |
| GTACATGAAAATGGGATCCA+CGG | 0.623753 | 1_3:+48299160 | None:intergenic |
| GGTAGCATCATTCTTGCAAG+AGG | 0.624604 | 1_3:+48296181 | None:intergenic |
| GTCTTACAAATATTGCTGCA+GGG | 0.625717 | 1_3:-48296652 | Msa0121990:CDS |
| GAATGTTCTTCTAATTCAAG+GGG | 0.631308 | 1_3:-48296212 | Msa0121990:CDS |
| ATTTAAGTGACAAACATACA+TGG | 0.635234 | 1_3:-48293313 | Msa0121990:three_prime_UTR |
| ACGACATGGAGTTGAGGCAA+GGG | 0.635732 | 1_3:+48293344 | None:intergenic |
| TGTGTCTGTAGGTCCTGAGA+GGG | 0.639506 | 1_3:-48293571 | Msa0121990:intron |
| GCAATTGATATATTCTAGCG+AGG | 0.651258 | 1_3:-48293969 | Msa0121990:CDS |
| TTCCTTTCTTATATCAAACG+AGG | 0.654247 | 1_3:+48293913 | None:intergenic |
| TGTGGAGCTTATTACCGCCG+TGG | 0.669968 | 1_3:-48299177 | Msa0121990:five_prime_UTR |
| CTACATACGACATGGAGTTG+AGG | 0.671337 | 1_3:+48293338 | None:intergenic |
| TTAAATTGCTACATACGACA+TGG | 0.671560 | 1_3:+48293330 | None:intergenic |
| ACACTGCTCAGCAACAGGTG+AGG | 0.682808 | 1_3:+48296279 | None:intergenic |
| ATGGGCTTGATGAGTAGTAG+CGG | 0.685874 | 1_3:-48293412 | Msa0121990:exon |
| TATTGCTGCAGGGAATCCAG+AGG | 0.701168 | 1_3:-48296642 | Msa0121990:CDS |
| TTAACAGCAGACTCAACAGG+AGG | 0.709103 | 1_3:+48296861 | None:intergenic |
| CTTTCTTATATCAAACGAGG+CGG | 0.709812 | 1_3:+48293916 | None:intergenic |
| AGCTATATTAGACAGCACCC+AGG | 0.713093 | 1_3:+48294012 | None:intergenic |
| CTGGTGAAGATGAAGAGTTG+AGG | 0.724921 | 1_3:-48296234 | Msa0121990:CDS |
| ACGTTCAACTGTTAGAACAG+CGG | 0.727420 | 1_3:-48296152 | Msa0121990:CDS |
| CATGAAAATGGGATCCACGG+CGG | 0.750897 | 1_3:+48299163 | None:intergenic |
| GTTACTCTTCACCAGCATGG+TGG | 0.759357 | 1_3:+48294520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATATATTTTTTAATTGAT+AGG | - | chr1_3:48295389-48295408 | Msa0121990:intron | 10.0% |
| !!! | ATATATTTTTTAATTGATAG+GGG | - | chr1_3:48295391-48295410 | Msa0121990:intron | 10.0% |
| !!! | TTTTATTTAGATAAATTGTT+AGG | - | chr1_3:48296854-48296873 | Msa0121990:CDS | 10.0% |
| !! | TAATAAATCATTTAGAAATT+TGG | + | chr1_3:48297482-48297501 | None:intergenic | 10.0% |
| !!! | AATGATTTATTAACTTATTT+TGG | - | chr1_3:48297490-48297509 | Msa0121990:intron | 10.0% |
| !! | AATTAATATAACAATAATCA+GGG | + | chr1_3:48297720-48297739 | None:intergenic | 10.0% |
| !! | AAATTAATATAACAATAATC+AGG | + | chr1_3:48297721-48297740 | None:intergenic | 10.0% |
| !! | TAATATTTGATTCAATAATT+TGG | - | chr1_3:48298268-48298287 | Msa0121990:intron | 10.0% |
| !!! | TTAACCTTTTTATTTTTGTA+TGG | - | chr1_3:48293691-48293710 | Msa0121990:intron | 15.0% |
| !! | TTTCTTAGTTTATGATAATT+AGG | - | chr1_3:48293718-48293737 | Msa0121990:intron | 15.0% |
| !! | TTCTTAGTTTATGATAATTA+GGG | - | chr1_3:48293719-48293738 | Msa0121990:intron | 15.0% |
| !! | AAAGATAAAATAAAGTCAAA+TGG | - | chr1_3:48293932-48293951 | Msa0121990:CDS | 15.0% |
| !!! | ATCTAAACTTTTAATATTGT+AGG | - | chr1_3:48294508-48294527 | Msa0121990:CDS | 15.0% |
| !!! | TCTAAACTTTTAATATTGTA+GGG | - | chr1_3:48294509-48294528 | Msa0121990:CDS | 15.0% |
| !!! | TATATTTTTTAATTGATAGG+GGG | - | chr1_3:48295392-48295411 | Msa0121990:intron | 15.0% |
| !! | CTTTATATCTATAGAAATAT+AGG | + | chr1_3:48295810-48295829 | None:intergenic | 15.0% |
| !! | TAAATAAGAAATGGTTTAAT+GGG | + | chr1_3:48297453-48297472 | None:intergenic | 15.0% |
| !! | ATAAATAAGAAATGGTTTAA+TGG | + | chr1_3:48297454-48297473 | None:intergenic | 15.0% |
| !!! | AAACCATTTCTTATTTATTT+TGG | - | chr1_3:48297456-48297475 | Msa0121990:intron | 15.0% |
| !!! | TACATGGAAATATTATTTTT+TGG | - | chr1_3:48297639-48297658 | Msa0121990:intron | 15.0% |
| !!! | TTTTTTGTTTCTAATAACAA+TGG | - | chr1_3:48297982-48298001 | Msa0121990:intron | 15.0% |
| !!! | TTTTTGTTTCTAATAACAAT+GGG | - | chr1_3:48297983-48298002 | Msa0121990:intron | 15.0% |
| !! | CAAACCATACAAAAATAAAA+AGG | + | chr1_3:48293698-48293717 | None:intergenic | 20.0% |
| !! | TAAACATCTATGAACTTATA+AGG | - | chr1_3:48294191-48294210 | Msa0121990:CDS | 20.0% |
| !!! | TGAACTTATAAGGAATTTTT+TGG | - | chr1_3:48294201-48294220 | Msa0121990:intron | 20.0% |
| !!! | CTAAACTTTTAATATTGTAG+GGG | - | chr1_3:48294510-48294529 | Msa0121990:CDS | 20.0% |
| !!! | TTCTCTTCTTAATTTTTACA+CGG | + | chr1_3:48294594-48294613 | None:intergenic | 20.0% |
| !! | TGTAAAAATTAAGAAGAGAA+TGG | - | chr1_3:48294594-48294613 | Msa0121990:intron | 20.0% |
| !! | GTAAAAATTAAGAAGAGAAT+GGG | - | chr1_3:48294595-48294614 | Msa0121990:intron | 20.0% |
| !! | TAAAAATTAAGAAGAGAATG+GGG | - | chr1_3:48294596-48294615 | Msa0121990:intron | 20.0% |
| !!! | TTCTATTCATGTAATTCTTT+TGG | + | chr1_3:48294699-48294718 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATTGTTTTCTTG+TGG | - | chr1_3:48294894-48294913 | Msa0121990:intron | 20.0% |
| !!! | GAAAAAAATTGTTTTCTTGT+GGG | - | chr1_3:48294895-48294914 | Msa0121990:intron | 20.0% |
| !!! | AAAAAAATTGTTTTCTTGTG+GGG | - | chr1_3:48294896-48294915 | Msa0121990:intron | 20.0% |
| !! | TATAGAAATATAGGTCAAAA+AGG | + | chr1_3:48295801-48295820 | None:intergenic | 20.0% |
| !! | CTATAGATATAAAGATTTAG+AGG | - | chr1_3:48295816-48295835 | Msa0121990:CDS | 20.0% |
| !! | TTACAATGCTTTAACAATTA+AGG | + | chr1_3:48295853-48295872 | None:intergenic | 20.0% |
| !! | TATAGTTGCAAAATTAATGA+AGG | + | chr1_3:48295955-48295974 | None:intergenic | 20.0% |
| !! | TGTATGTAATATTCATTTGA+TGG | + | chr1_3:48296254-48296273 | None:intergenic | 20.0% |
| !!! | ATAACACTTCTAAAAATCTA+CGG | + | chr1_3:48296370-48296389 | None:intergenic | 20.0% |
| !! | ATGAAATATATTAACTGTAG+TGG | + | chr1_3:48296741-48296760 | None:intergenic | 20.0% |
| !!! | CAAAAGTTTTATAATCAAAG+AGG | - | chr1_3:48297413-48297432 | Msa0121990:intron | 20.0% |
| !! | AAATAAGAAATGGTTTAATG+GGG | + | chr1_3:48297452-48297471 | None:intergenic | 20.0% |
| !!! | TAATTTTATTTTATCACCTC+AGG | - | chr1_3:48297735-48297754 | Msa0121990:intron | 20.0% |
| !!! | AATTTTATTTTATCACCTCA+GGG | - | chr1_3:48297736-48297755 | Msa0121990:intron | 20.0% |
| !! | AAAATCAATCTGAATAATTG+TGG | + | chr1_3:48297966-48297985 | None:intergenic | 20.0% |
| !! | TGAATGTATAAATAACTACT+TGG | - | chr1_3:48298646-48298665 | Msa0121990:intron | 20.0% |
| !! | ACAATAAATCATAAACAACA+CGG | + | chr1_3:48298757-48298776 | None:intergenic | 20.0% |
| ! | TTATAACGGTACATGAAAAT+GGG | + | chr1_3:48293196-48293215 | None:intergenic | 25.0% |
| ! | TTTATAACGGTACATGAAAA+TGG | + | chr1_3:48293197-48293216 | None:intergenic | 25.0% |
| !! | TGATGAAGAACAATCTATTT+TGG | - | chr1_3:48293602-48293621 | Msa0121990:intron | 25.0% |
| ! | TATGATAATTAGGGTTAGAA+TGG | - | chr1_3:48293728-48293747 | Msa0121990:intron | 25.0% |
| ! | TCTTTGTATCTTATAATTGC+TGG | - | chr1_3:48293829-48293848 | Msa0121990:CDS | 25.0% |
| !! | AATAAGACGAAAACAACTTT+TGG | - | chr1_3:48294010-48294029 | Msa0121990:CDS | 25.0% |
| ! | ACTAACTTGAATTTATCTAC+TGG | + | chr1_3:48294091-48294110 | None:intergenic | 25.0% |
| !! | ATAAACTAGTTTCAACACAT+AGG | + | chr1_3:48294128-48294147 | None:intergenic | 25.0% |
| ! | TGTATCTCATTTGTTCTTAT+AGG | - | chr1_3:48294147-48294166 | Msa0121990:CDS | 25.0% |
| ! | ATGTACTTGAATCAGTTAAT+AGG | - | chr1_3:48294297-48294316 | Msa0121990:CDS | 25.0% |
| ! | ATTTATTTGTGTCTTCTAAC+AGG | + | chr1_3:48294401-48294420 | None:intergenic | 25.0% |
| !! | ACCTTTAAATATTGATTGTG+AGG | - | chr1_3:48294443-48294462 | Msa0121990:intron | 25.0% |
| !! | CCTTTAAATATTGATTGTGA+GGG | - | chr1_3:48294444-48294463 | Msa0121990:intron | 25.0% |
| !! | ATCAACTAAATTTTATCGAC+CGG | + | chr1_3:48294476-48294495 | None:intergenic | 25.0% |
| !! | TCTCTTCTTAATTTTTACAC+GGG | + | chr1_3:48294593-48294612 | None:intergenic | 25.0% |
| ! | AAAAATTAAGAAGAGAATGG+GGG | - | chr1_3:48294597-48294616 | Msa0121990:intron | 25.0% |
| ! | TTCATAACTATTATGTGTGT+AGG | + | chr1_3:48294670-48294689 | None:intergenic | 25.0% |
| ! | TACACACATAATAGTTATGA+AGG | - | chr1_3:48294669-48294688 | Msa0121990:intron | 25.0% |
| !!! | TCAGTTTTGACTTTAACTAT+TGG | + | chr1_3:48294777-48294796 | None:intergenic | 25.0% |
| !! | AAAAAATTGTTTTCTTGTGG+GGG | - | chr1_3:48294897-48294916 | Msa0121990:intron | 25.0% |
| !! | TTAAATAGCTTTACCTTCAT+TGG | + | chr1_3:48295004-48295023 | None:intergenic | 25.0% |
| ! | TGTAAGATATCTACAATCTA+AGG | - | chr1_3:48295868-48295887 | Msa0121990:intron | 25.0% |
| ! | GAAGAACTTCATTATAATGT+TGG | + | chr1_3:48295979-48295998 | None:intergenic | 25.0% |
| ! | CATTATAATGAAGTTCTTCA+AGG | - | chr1_3:48295980-48295999 | Msa0121990:intron | 25.0% |
| ! | CATATAAAAACACATGTATG+TGG | + | chr1_3:48296452-48296471 | None:intergenic | 25.0% |
| ! | ATTTCAGTATGTTTGCATAT+AGG | - | chr1_3:48296472-48296491 | Msa0121990:intron | 25.0% |
| ! | TTTCAGTATGTTTGCATATA+GGG | - | chr1_3:48296473-48296492 | Msa0121990:intron | 25.0% |
| !! | AAACTATTCTGTTCTGTTTT+TGG | - | chr1_3:48296767-48296786 | Msa0121990:intron | 25.0% |
| ! | TGGCCAAAATAAATAAGAAA+TGG | + | chr1_3:48297462-48297481 | None:intergenic | 25.0% |
| !! | TGAAGTTCATGAAATTTTTG+TGG | - | chr1_3:48297514-48297533 | Msa0121990:intron | 25.0% |
| ! | AGTGAACTTTATGATTATAG+TGG | + | chr1_3:48297552-48297571 | None:intergenic | 25.0% |
| !! | TGTAGTCATAATTTTACTAG+AGG | + | chr1_3:48297623-48297642 | None:intergenic | 25.0% |
| ! | CTAGTAAAATTATGACTACA+TGG | - | chr1_3:48297623-48297642 | Msa0121990:intron | 25.0% |
| ! | CATACTGTTTGATTAAAATG+CGG | + | chr1_3:48298139-48298158 | None:intergenic | 25.0% |
| ! | AATAACTACTTGGTAGATTA+TGG | - | chr1_3:48298656-48298675 | Msa0121990:intron | 25.0% |
| ! | AATAAATCATAAACAACACG+GGG | + | chr1_3:48298755-48298774 | None:intergenic | 25.0% |
| ! | CAATAAATCATAAACAACAC+GGG | + | chr1_3:48298756-48298775 | None:intergenic | 25.0% |
| ! | TTATGATTTATTGTGTCTGT+AGG | - | chr1_3:48298763-48298782 | Msa0121990:CDS | 25.0% |
| ! | ATTTAAGTGACAAACATACA+TGG | - | chr1_3:48299032-48299051 | Msa0121990:intron | 25.0% |
| !! | AGGTTTGATAAAATTTTCTG+CGG | - | chr1_3:48299103-48299122 | Msa0121990:five_prime_UTR | 25.0% |
| !!! | CGGTGGTTCTTTTTTTATAA+CGG | + | chr1_3:48293210-48293229 | None:intergenic | 30.0% |
| GTGTACCTGATGATTTAATA+GGG | + | chr1_3:48293314-48293333 | None:intergenic | 30.0% | |
| AGTGTACCTGATGATTTAAT+AGG | + | chr1_3:48293315-48293334 | None:intergenic | 30.0% | |
| ATTTCATACAACATAGCTCT+AGG | - | chr1_3:48293374-48293393 | Msa0121990:three_prime_UTR | 30.0% | |
| TCTACTTCCAAAAAATTCAC+CGG | + | chr1_3:48293766-48293785 | None:intergenic | 30.0% | |
| ATCTTATAATTGCTGGTCAT+AGG | - | chr1_3:48293836-48293855 | Msa0121990:CDS | 30.0% | |
| TCTTATAATTGCTGGTCATA+GGG | - | chr1_3:48293837-48293856 | Msa0121990:CDS | 30.0% | |
| TTCTCAAGAAATTGAGCTAT+AGG | - | chr1_3:48293875-48293894 | Msa0121990:CDS | 30.0% | |
| TCTCAAGAAATTGAGCTATA+GGG | - | chr1_3:48293876-48293895 | Msa0121990:CDS | 30.0% | |
| TGTTTCCATATAAGCTATCT+TGG | - | chr1_3:48293975-48293994 | Msa0121990:CDS | 30.0% | |
| AACTATGAACCAATTTGGAT+TGG | + | chr1_3:48294253-48294272 | None:intergenic | 30.0% | |
| ACACAAACTATGAACCAATT+TGG | + | chr1_3:48294258-48294277 | None:intergenic | 30.0% | |
| CCCTCACAATCAATATTTAA+AGG | + | chr1_3:48294447-48294466 | None:intergenic | 30.0% | |
| AAAATTAAGAAGAGAATGGG+GGG | - | chr1_3:48294598-48294617 | Msa0121990:intron | 30.0% | |
| TGTGTGAAGAATTTGATTGA+AGG | - | chr1_3:48294635-48294654 | Msa0121990:intron | 30.0% | |
| GTGTGAAGAATTTGATTGAA+GGG | - | chr1_3:48294636-48294655 | Msa0121990:intron | 30.0% | |
| AGTAACTGAACACATAACAA+AGG | - | chr1_3:48294742-48294761 | Msa0121990:intron | 30.0% | |
| !!! | GTTTTGACTTTAACTATTGG+TGG | + | chr1_3:48294774-48294793 | None:intergenic | 30.0% |
| !! | AGTATGTCTAGTTTGTTTGA+CGG | - | chr1_3:48294840-48294859 | Msa0121990:intron | 30.0% |
| ATCTTTGTTCATCGTAAACA+GGG | + | chr1_3:48294964-48294983 | None:intergenic | 30.0% | |
| AATCTTTGTTCATCGTAAAC+AGG | + | chr1_3:48294965-48294984 | None:intergenic | 30.0% | |
| TGCTAATCATGTGTCAAATA+TGG | + | chr1_3:48295085-48295104 | None:intergenic | 30.0% | |
| TGATTAGCAAATAGTTGTGT+TGG | - | chr1_3:48295096-48295115 | Msa0121990:intron | 30.0% | |
| TGATAATTTCATATGCATGC+AGG | - | chr1_3:48295186-48295205 | Msa0121990:intron | 30.0% | |
| !!! | TTTTTTAATTGATAGGGGGA+AGG | - | chr1_3:48295396-48295415 | Msa0121990:intron | 30.0% |
| !! | TTTTTAATTGATAGGGGGAA+GGG | - | chr1_3:48295397-48295416 | Msa0121990:intron | 30.0% |
| TAAACGCCTTAATTCTTGAA+GGG | + | chr1_3:48295446-48295465 | None:intergenic | 30.0% | |
| AGAGCATATGGAATCATTAA+TGG | - | chr1_3:48295599-48295618 | Msa0121990:intron | 30.0% | |
| TCTACAATCTAAGGAAAGAA+TGG | - | chr1_3:48295877-48295896 | Msa0121990:intron | 30.0% | |
| CTACAATCTAAGGAAAGAAT+GGG | - | chr1_3:48295878-48295897 | Msa0121990:intron | 30.0% | |
| AAAAAGAATAGGATGCAAGT+AGG | + | chr1_3:48295920-48295939 | None:intergenic | 30.0% | |
| !! | GGGCATTTTAGAAAAAGAAT+AGG | + | chr1_3:48295931-48295950 | None:intergenic | 30.0% |
| GTTGCAAAATTAATGAAGGT+GGG | + | chr1_3:48295951-48295970 | None:intergenic | 30.0% | |
| AGTTGCAAAATTAATGAAGG+TGG | + | chr1_3:48295952-48295971 | None:intergenic | 30.0% | |
| ! | GGACTACTTATGAATTTTGA+AGG | + | chr1_3:48296027-48296046 | None:intergenic | 30.0% |
| AGGAATGTTCTTCTAATTCA+AGG | - | chr1_3:48296131-48296150 | Msa0121990:CDS | 30.0% | |
| GGAATGTTCTTCTAATTCAA+GGG | - | chr1_3:48296132-48296151 | Msa0121990:CDS | 30.0% | |
| GAATGTTCTTCTAATTCAAG+GGG | - | chr1_3:48296133-48296152 | Msa0121990:CDS | 30.0% | |
| ! | ATTATGGTTTTTGTGGAAGA+TGG | - | chr1_3:48296420-48296439 | Msa0121990:intron | 30.0% |
| ! | CAGTTACTTTATAACATGCA+TGG | - | chr1_3:48296641-48296660 | Msa0121990:CDS | 30.0% |
| !! | TTATGTTGCTTTATTGTGCA+TGG | - | chr1_3:48296673-48296692 | Msa0121990:CDS | 30.0% |
| !! | TATGTTGCTTTATTGTGCAT+GGG | - | chr1_3:48296674-48296693 | Msa0121990:CDS | 30.0% |
| ! | GATTGGAGTTCTAATAGATT+TGG | - | chr1_3:48296940-48296959 | Msa0121990:intron | 30.0% |
| ! | TTTGGTTCATCACTGATATA+GGG | - | chr1_3:48297096-48297115 | Msa0121990:intron | 30.0% |
| TTATCAACTAGTATTAGAGC+TGG | - | chr1_3:48297184-48297203 | Msa0121990:intron | 30.0% | |
| CTAATAGCTCTCTTATATTC+GGG | + | chr1_3:48297317-48297336 | None:intergenic | 30.0% | |
| CCTAATAGCTCTCTTATATT+CGG | + | chr1_3:48297318-48297337 | None:intergenic | 30.0% | |
| CGAATATAAGAGAGCTATTA+GGG | - | chr1_3:48297316-48297335 | Msa0121990:intron | 30.0% | |
| CATAAAGTTCACTTTCCTAT+AGG | - | chr1_3:48297559-48297578 | Msa0121990:intron | 30.0% | |
| ! | TTTTAAGCTCAGAAACCTAT+AGG | + | chr1_3:48297577-48297596 | None:intergenic | 30.0% |
| CAGTTTGCAATTAATGATTC+CGG | - | chr1_3:48297886-48297905 | Msa0121990:intron | 30.0% | |
| AAAATTCTCGAGATTCTTAC+CGG | + | chr1_3:48297908-48297927 | None:intergenic | 30.0% | |
| !! | CGCATTTTAATCAAACAGTA+TGG | - | chr1_3:48298137-48298156 | Msa0121990:intron | 30.0% |
| !!! | AGAGCTTTTTTTTCTTATGC+AGG | - | chr1_3:48298304-48298323 | Msa0121990:intron | 30.0% |
| TTCCTTTCTTATATCAAACG+AGG | + | chr1_3:48298435-48298454 | None:intergenic | 30.0% | |
| AAGGAAGTTGCTTACATATT+AGG | - | chr1_3:48298449-48298468 | Msa0121990:intron | 30.0% | |
| CTAACCAAATCAATAAAACC+TGG | + | chr1_3:48298563-48298582 | None:intergenic | 30.0% | |
| ! | AGTCTAGTTGACAAGTATTT+TGG | - | chr1_3:48298902-48298921 | Msa0121990:intron | 30.0% |
| TTAAATTGCTACATACGACA+TGG | + | chr1_3:48299018-48299037 | None:intergenic | 30.0% | |
| AGGTCAATAGAATCTGTATT+CGG | - | chr1_3:48299073-48299092 | Msa0121990:exon | 30.0% | |
| ! | TGTGGTTATACTCTTTTCAT+TGG | - | chr1_3:48299128-48299147 | Msa0121990:five_prime_UTR | 30.0% |
| !!! | ACTGGAAGTGTATTTTTAGT+AGG | - | chr1_3:48299162-48299181 | Msa0121990:five_prime_UTR | 30.0% |
| ! | TTTAATAGGGTCCCTTTTGT+TGG | + | chr1_3:48293301-48293320 | None:intergenic | 35.0% |
| !! | TTTGTTTTCAGTTGCGAATG+CGG | - | chr1_3:48293443-48293462 | Msa0121990:CDS | 35.0% |
| !!! | AATTGGACCGGTGAATTTTT+TGG | - | chr1_3:48293756-48293775 | Msa0121990:CDS | 35.0% |
| AAATTGAGCTATAGGGCTTA+CGG | - | chr1_3:48293883-48293902 | Msa0121990:CDS | 35.0% | |
| GCTTTCCAAGATAGCTTATA+TGG | + | chr1_3:48293983-48294002 | None:intergenic | 35.0% | |
| !! | AGACTGTTCTAGAGAACTTA+TGG | + | chr1_3:48294054-48294073 | None:intergenic | 35.0% |
| CAAGTTAGTCAAATCCTAAC+AGG | - | chr1_3:48294102-48294121 | Msa0121990:intron | 35.0% | |
| AGATGAAGATTCCAAAAGCT+AGG | - | chr1_3:48294225-48294244 | Msa0121990:intron | 35.0% | |
| GATGAAGATTCCAAAAGCTA+GGG | - | chr1_3:48294226-48294245 | Msa0121990:intron | 35.0% | |
| ATGAAGATTCCAAAAGCTAG+GGG | - | chr1_3:48294227-48294246 | Msa0121990:intron | 35.0% | |
| ATAGCAAGAACTGAACTAAC+AGG | + | chr1_3:48294367-48294386 | None:intergenic | 35.0% | |
| CAAGAAGAAGAGACAAAGAA+CGG | - | chr1_3:48294542-48294561 | Msa0121990:CDS | 35.0% | |
| GAACGGTTTATGTTGATGTT+CGG | - | chr1_3:48294559-48294578 | Msa0121990:CDS | 35.0% | |
| TGAAGAATTTGATTGAAGGG+TGG | - | chr1_3:48294639-48294658 | Msa0121990:intron | 35.0% | |
| GAAGAATTTGATTGAAGGGT+GGG | - | chr1_3:48294640-48294659 | Msa0121990:intron | 35.0% | |
| !! | GTATGTCTAGTTTGTTTGAC+GGG | - | chr1_3:48294841-48294860 | Msa0121990:intron | 35.0% |
| !! | TATGTCTAGTTTGTTTGACG+GGG | - | chr1_3:48294842-48294861 | Msa0121990:intron | 35.0% |
| TCTTTGTTCATCGTAAACAG+GGG | + | chr1_3:48294963-48294982 | None:intergenic | 35.0% | |
| !! | TTCTGAATCTTCTGGTTTAG+AGG | - | chr1_3:48295145-48295164 | Msa0121990:intron | 35.0% |
| !! | TCTGAATCTTCTGGTTTAGA+GGG | - | chr1_3:48295146-48295165 | Msa0121990:intron | 35.0% |
| CATCAATCTTAGTGCCTAAT+TGG | + | chr1_3:48295217-48295236 | None:intergenic | 35.0% | |
| ! | AGTGTTTTCTCTTACCTCTT+TGG | - | chr1_3:48295270-48295289 | Msa0121990:intron | 35.0% |
| !! | TTACCTCTTTGGTAATGTGT+CGG | - | chr1_3:48295281-48295300 | Msa0121990:intron | 35.0% |
| ! | TTGAAGATTTTCTCAGTCTG+TGG | + | chr1_3:48295318-48295337 | None:intergenic | 35.0% |
| GTAAACGCCTTAATTCTTGA+AGG | + | chr1_3:48295447-48295466 | None:intergenic | 35.0% | |
| TGAAAGACACTGAACTAGTA+TGG | + | chr1_3:48295524-48295543 | None:intergenic | 35.0% | |
| CTAGTTCAGTGTCTTTCATT+TGG | - | chr1_3:48295526-48295545 | Msa0121990:intron | 35.0% | |
| TGTCTTACAAATATTGCTGC+AGG | - | chr1_3:48295692-48295711 | Msa0121990:intron | 35.0% | |
| GTCTTACAAATATTGCTGCA+GGG | - | chr1_3:48295693-48295712 | Msa0121990:intron | 35.0% | |
| AATCTAAGGAAAGAATGGGA+TGG | - | chr1_3:48295882-48295901 | Msa0121990:intron | 35.0% | |
| ! | GGCTTTGTCTAATCTAATCA+AGG | - | chr1_3:48296220-48296239 | Msa0121990:CDS | 35.0% |
| ! | TATGTACTCATCAGCTTTTG+TGG | - | chr1_3:48296387-48296406 | Msa0121990:intron | 35.0% |
| ! | CTTGTGCATTATGGTTTTTG+TGG | - | chr1_3:48296413-48296432 | Msa0121990:intron | 35.0% |
| ATAAGTTCGTTAGCAGCTTT+AGG | + | chr1_3:48296506-48296525 | None:intergenic | 35.0% | |
| AACGAACTTATACGTGTTGA+TGG | - | chr1_3:48296515-48296534 | Msa0121990:intron | 35.0% | |
| ! | TATACGTGTTGATGGAGTAT+TGG | - | chr1_3:48296523-48296542 | Msa0121990:intron | 35.0% |
| ATATAACAAAGGTAAGTCCG+GGG | + | chr1_3:48296587-48296606 | None:intergenic | 35.0% | |
| GATATAACAAAGGTAAGTCC+GGG | + | chr1_3:48296588-48296607 | None:intergenic | 35.0% | |
| GGATATAACAAAGGTAAGTC+CGG | + | chr1_3:48296589-48296608 | None:intergenic | 35.0% | |
| ! | TGCTGACTAGGATATAACAA+AGG | + | chr1_3:48296598-48296617 | None:intergenic | 35.0% |
| GAAGAAGTTAGTGTAGTTTG+TGG | - | chr1_3:48296912-48296931 | Msa0121990:CDS | 35.0% | |
| ! | TGTAGTTTGTGGTTGTTGAT+TGG | - | chr1_3:48296923-48296942 | Msa0121990:CDS | 35.0% |
| CTAATAGATTTGGCAGAAGT+AGG | - | chr1_3:48296950-48296969 | Msa0121990:intron | 35.0% | |
| !! | TGGATAGTTGGGATTTGTTT+TGG | - | chr1_3:48297006-48297025 | Msa0121990:intron | 35.0% |
| !!! | ATAGTTGGGATTTGTTTTGG+TGG | - | chr1_3:48297009-48297028 | Msa0121990:intron | 35.0% |
| !!! | TAGTTGGGATTTGTTTTGGT+GGG | - | chr1_3:48297010-48297029 | Msa0121990:intron | 35.0% |
| ATCAGTGATGAACCAAAGTT+AGG | + | chr1_3:48297093-48297112 | None:intergenic | 35.0% | |
| ! | CTTTGGTTCATCACTGATAT+AGG | - | chr1_3:48297095-48297114 | Msa0121990:intron | 35.0% |
| TCATCACTGATATAGGGTTT+AGG | - | chr1_3:48297102-48297121 | Msa0121990:intron | 35.0% | |
| CATCACTGATATAGGGTTTA+GGG | - | chr1_3:48297103-48297122 | Msa0121990:intron | 35.0% | |
| TTGAAGACGATTCCAAAGTT+TGG | - | chr1_3:48297230-48297249 | Msa0121990:intron | 35.0% | |
| ATCAAAGTACAACTCCTCAT+TGG | + | chr1_3:48297282-48297301 | None:intergenic | 35.0% | |
| CCGAATATAAGAGAGCTATT+AGG | - | chr1_3:48297315-48297334 | Msa0121990:intron | 35.0% | |
| AAGAAATGGTTTAATGGGGA+GGG | + | chr1_3:48297448-48297467 | None:intergenic | 35.0% | |
| TAAGAAATGGTTTAATGGGG+AGG | + | chr1_3:48297449-48297468 | None:intergenic | 35.0% | |
| GAGCTTAAAATCAGAAGTGA+TGG | - | chr1_3:48297587-48297606 | Msa0121990:intron | 35.0% | |
| ! | TTGGTAACAGCTGGATAAAT+CGG | + | chr1_3:48297672-48297691 | None:intergenic | 35.0% |
| ! | TTATGTCAATTGGTAACAGC+TGG | + | chr1_3:48297681-48297700 | None:intergenic | 35.0% |
| TTCGGGGATATTATGTCAAT+TGG | + | chr1_3:48297691-48297710 | None:intergenic | 35.0% | |
| ATTGACATAATATCCCCGAA+AGG | - | chr1_3:48297691-48297710 | Msa0121990:intron | 35.0% | |
| AATAATTGTGGTTTCGTGTG+CGG | + | chr1_3:48297954-48297973 | None:intergenic | 35.0% | |
| TAAACTTCGCAAAACCTACA+GGG | + | chr1_3:48298013-48298032 | None:intergenic | 35.0% | |
| AAGAACAGCATAAGTTGCAT+GGG | + | chr1_3:48298058-48298077 | None:intergenic | 35.0% | |
| ! | ACATTTTATCAGAGCTTGCA+TGG | + | chr1_3:48298208-48298227 | None:intergenic | 35.0% |
| AATGTCTGAATAGTGAACAC+AGG | - | chr1_3:48298223-48298242 | Msa0121990:intron | 35.0% | |
| ATGTCTGAATAGTGAACACA+GGG | - | chr1_3:48298224-48298243 | Msa0121990:intron | 35.0% | |
| GCAATTGATATATTCTAGCG+AGG | - | chr1_3:48298376-48298395 | Msa0121990:intron | 35.0% | |
| ! | GAAAAAAGGTGCAATAGCAA+AGG | + | chr1_3:48298407-48298426 | None:intergenic | 35.0% |
| CTTTCTTATATCAAACGAGG+CGG | + | chr1_3:48298432-48298451 | None:intergenic | 35.0% | |
| ! | CTGGTTTCACTTGTTGAAAA+AGG | - | chr1_3:48298530-48298549 | Msa0121990:intron | 35.0% |
| !!! | CTTGCCAGGTTTTATTGATT+TGG | - | chr1_3:48298556-48298575 | Msa0121990:intron | 35.0% |
| GGTTTAGATCTCAAAGAATG+TGG | + | chr1_3:48298734-48298753 | None:intergenic | 35.0% | |
| CTTCTTGTTCTACAAGCTTT+GGG | + | chr1_3:48298817-48298836 | None:intergenic | 35.0% | |
| TCTTCTTGTTCTACAAGCTT+TGG | + | chr1_3:48298818-48298837 | None:intergenic | 35.0% | |
| AAGCTTGTAGAACAAGAAGA+TGG | - | chr1_3:48298818-48298837 | Msa0121990:CDS | 35.0% | |
| AGCTTGTAGAACAAGAAGAT+GGG | - | chr1_3:48298819-48298838 | Msa0121990:CDS | 35.0% | |
| GTGAAACTGAAATCTTTCCA+TGG | + | chr1_3:48298852-48298871 | None:intergenic | 35.0% | |
| AAATGAAGACGTGAGAACTA+TGG | - | chr1_3:48298874-48298893 | Msa0121990:CDS | 35.0% | |
| !! | AGTTGACAAGTATTTTGGAG+AGG | - | chr1_3:48298907-48298926 | Msa0121990:intron | 35.0% |
| !! | AAGTATTTTGGAGAGGACTA+TGG | - | chr1_3:48298914-48298933 | Msa0121990:intron | 35.0% |
| !! | AGTATTTTGGAGAGGACTAT+GGG | - | chr1_3:48298915-48298934 | Msa0121990:intron | 35.0% |
| GGCTGAATATTCTTCATCAA+AGG | - | chr1_3:48299053-48299072 | Msa0121990:CDS | 35.0% | |
| GGTCAATAGAATCTGTATTC+GGG | - | chr1_3:48299074-48299093 | Msa0121990:exon | 35.0% | |
| ! | ATAAAATTTTCTGCGGCTTG+TGG | - | chr1_3:48299110-48299129 | Msa0121990:five_prime_UTR | 35.0% |
| GTACATGAAAATGGGATCCA+CGG | + | chr1_3:48293188-48293207 | None:intergenic | 40.0% | |
| !! | GACGCTGAAAAAGGTTTTAG+CGG | + | chr1_3:48293230-48293249 | None:intergenic | 40.0% |
| GTGAAACGAATGCAAGTGTT+TGG | + | chr1_3:48293254-48293273 | None:intergenic | 40.0% | |
| CGTTTCACCTTCTTCTTCAA+TGG | - | chr1_3:48293266-48293285 | Msa0121990:three_prime_UTR | 40.0% | |
| AGGGACCCTATTAAATCATC+AGG | - | chr1_3:48293306-48293325 | Msa0121990:three_prime_UTR | 40.0% | |
| ! | GCTCTAGGTTTATGCTTTCT+TGG | - | chr1_3:48293389-48293408 | Msa0121990:three_prime_UTR | 40.0% |
| GACAACTTGCAGTTACAGTT+GGG | - | chr1_3:48293481-48293500 | Msa0121990:CDS | 40.0% | |
| TTACAGTTGGGAAAGAGAGA+AGG | - | chr1_3:48293493-48293512 | Msa0121990:CDS | 40.0% | |
| TACAGTTGGGAAAGAGAGAA+GGG | - | chr1_3:48293494-48293513 | Msa0121990:CDS | 40.0% | |
| GCAAAACGACTTTGTAGAGT+TGG | - | chr1_3:48293531-48293550 | Msa0121990:CDS | 40.0% | |
| ! | TTTGGAGTCTCAGACTTCAT+TGG | - | chr1_3:48293620-48293639 | Msa0121990:intron | 40.0% |
| GGGTTAGAATGGCTTCAAAT+TGG | - | chr1_3:48293739-48293758 | Msa0121990:CDS | 40.0% | |
| AGAATGGCTTCAAATTGGAC+CGG | - | chr1_3:48293744-48293763 | Msa0121990:CDS | 40.0% | |
| ATAATTGCTGGTCATAGGGT+TGG | - | chr1_3:48293841-48293860 | Msa0121990:CDS | 40.0% | |
| TTTCAACACATAGGCCTGTT+AGG | + | chr1_3:48294119-48294138 | None:intergenic | 40.0% | |
| ! | AAATTGTTTTCTTGTGGGGG+AGG | - | chr1_3:48294900-48294919 | Msa0121990:intron | 40.0% |
| ! | AATTGTTTTCTTGTGGGGGA+GGG | - | chr1_3:48294901-48294920 | Msa0121990:intron | 40.0% |
| ! | CAAATAGTTGTGTTGGTCTG+AGG | - | chr1_3:48295103-48295122 | Msa0121990:intron | 40.0% |
| ! | ACCAAGTGTTCTGAATCTTC+TGG | - | chr1_3:48295137-48295156 | Msa0121990:intron | 40.0% |
| ACCAGAAGATTCAGAACACT+TGG | + | chr1_3:48295141-48295160 | None:intergenic | 40.0% | |
| !! | CTGAATCTTCTGGTTTAGAG+GGG | - | chr1_3:48295147-48295166 | Msa0121990:intron | 40.0% |
| !! | TGAATCTTCTGGTTTAGAGG+GGG | - | chr1_3:48295148-48295167 | Msa0121990:intron | 40.0% |
| !! | TACCTCTTTGGTAATGTGTC+GGG | - | chr1_3:48295282-48295301 | Msa0121990:intron | 40.0% |
| TAGGTGCCCTTCAAGAATTA+AGG | - | chr1_3:48295437-48295456 | Msa0121990:intron | 40.0% | |
| !! | ATTTGGTTCTCCAGATGAAC+AGG | - | chr1_3:48295543-48295562 | Msa0121990:intron | 40.0% |
| TGCATGTTATGCAGAGCATA+TGG | - | chr1_3:48295587-48295606 | Msa0121990:intron | 40.0% | |
| !! | AGCAAAGCTTTTGTTTCCTC+TGG | + | chr1_3:48295722-48295741 | None:intergenic | 40.0% |
| CTTTGCTTATTGCTCACCTT+GGG | - | chr1_3:48295753-48295772 | Msa0121990:intron | 40.0% | |
| TTTGCTTATTGCTCACCTTG+GGG | - | chr1_3:48295754-48295773 | Msa0121990:intron | 40.0% | |
| TAAGGAAAGAATGGGATGGA+GGG | - | chr1_3:48295886-48295905 | Msa0121990:intron | 40.0% | |
| !! | CATTCTTGCAAGAGGTACTA+AGG | + | chr1_3:48296159-48296178 | None:intergenic | 40.0% |
| CTAACAGTTGAACGTCTGTA+TGG | + | chr1_3:48296188-48296207 | None:intergenic | 40.0% | |
| ACGTTCAACTGTTAGAACAG+CGG | - | chr1_3:48296193-48296212 | Msa0121990:CDS | 40.0% | |
| GATTAGATTAGACAAAGCCC+AGG | + | chr1_3:48296219-48296238 | None:intergenic | 40.0% | |
| TCTTCTTTGCTTGTACTGTG+TGG | - | chr1_3:48296343-48296362 | Msa0121990:intron | 40.0% | |
| TTGTGGTCTCTTGTGCATTA+TGG | - | chr1_3:48296404-48296423 | Msa0121990:intron | 40.0% | |
| !! | TCGTTAGCAGCTTTAGGATT+TGG | + | chr1_3:48296500-48296519 | None:intergenic | 40.0% |
| ! | AACAGTGAAACATGCTGACT+AGG | + | chr1_3:48296610-48296629 | None:intergenic | 40.0% |
| ATTGTTAGGAAAGCCCAAAC+AGG | - | chr1_3:48296868-48296887 | Msa0121990:CDS | 40.0% | |
| AGTAGGCTATAAAGAGAGAG+TGG | - | chr1_3:48296967-48296986 | Msa0121990:intron | 40.0% | |
| GTAGGCTATAAAGAGAGAGT+GGG | - | chr1_3:48296968-48296987 | Msa0121990:intron | 40.0% | |
| AGGCTATTGATATTCCTCTC+AGG | + | chr1_3:48297058-48297077 | None:intergenic | 40.0% | |
| AAGTTAGGAAGGACAAACAC+AGG | + | chr1_3:48297078-48297097 | None:intergenic | 40.0% | |
| GTGTTTGTCCTTCCTAACTT+TGG | - | chr1_3:48297078-48297097 | Msa0121990:intron | 40.0% | |
| GTGATGAACCAAAGTTAGGA+AGG | + | chr1_3:48297089-48297108 | None:intergenic | 40.0% | |
| CTAGTATTAGAGCTGGATGT+TGG | - | chr1_3:48297191-48297210 | Msa0121990:intron | 40.0% | |
| AAGACGATTCCAAAGTTTGG+CGG | - | chr1_3:48297233-48297252 | Msa0121990:intron | 40.0% | |
| ! | TTATTGGTTGCTGACCAATG+AGG | - | chr1_3:48297265-48297284 | Msa0121990:intron | 40.0% |
| CTTATATTCGGGTGTTCTGT+TGG | + | chr1_3:48297306-48297325 | None:intergenic | 40.0% | |
| !! | AGAGCTATTAGGGCTCTAAA+GGG | - | chr1_3:48297326-48297345 | Msa0121990:intron | 40.0% |
| GACACCATCCATATGCAAAA+TGG | - | chr1_3:48297380-48297399 | Msa0121990:intron | 40.0% | |
| ACCATCCATATGCAAAATGG+CGG | - | chr1_3:48297383-48297402 | Msa0121990:intron | 40.0% | |
| AATAATCAGGGTAGCCTTTC+GGG | + | chr1_3:48297708-48297727 | None:intergenic | 40.0% | |
| CAATAATCAGGGTAGCCTTT+CGG | + | chr1_3:48297709-48297728 | None:intergenic | 40.0% | |
| AATCAGCTACTGAAGTAGCA+TGG | - | chr1_3:48297765-48297784 | Msa0121990:intron | 40.0% | |
| ATCAGCTACTGAAGTAGCAT+GGG | - | chr1_3:48297766-48297785 | Msa0121990:intron | 40.0% | |
| AAATTTAGCTACCACCATGC+TGG | - | chr1_3:48297814-48297833 | Msa0121990:intron | 40.0% | |
| TAACAATGGGAAATCCCTGT+AGG | - | chr1_3:48297996-48298015 | Msa0121990:intron | 40.0% | |
| CTAAACTTCGCAAAACCTAC+AGG | + | chr1_3:48298014-48298033 | None:intergenic | 40.0% | |
| ! | CTGTAGGTTTTGCGAAGTTT+AGG | - | chr1_3:48298012-48298031 | Msa0121990:intron | 40.0% |
| AGTTTAGGTAATCTCGTTGC+TGG | - | chr1_3:48298027-48298046 | Msa0121990:intron | 40.0% | |
| CAAGAACAGCATAAGTTGCA+TGG | + | chr1_3:48298059-48298078 | None:intergenic | 40.0% | |
| ACTTATGCTGTTCTTGTACC+TGG | - | chr1_3:48298063-48298082 | Msa0121990:intron | 40.0% | |
| CGCCTCGTTTGATATAAGAA+AGG | - | chr1_3:48298430-48298449 | Msa0121990:intron | 40.0% | |
| ATTTGCGTTGCTCCAACTAA+AGG | - | chr1_3:48298476-48298495 | Msa0121990:intron | 40.0% | |
| ATATTGAAGCTGCCAAGCTA+GGG | - | chr1_3:48298591-48298610 | Msa0121990:intron | 40.0% | |
| TATAAACTGAAGCCCTAGCT+TGG | + | chr1_3:48298606-48298625 | None:intergenic | 40.0% | |
| AATCTGTATTCGGGATTGAG+AGG | - | chr1_3:48299083-48299102 | Msa0121990:five_prime_UTR | 40.0% | |
| !! | TCATTGGTCTTGTGATAGAC+TGG | - | chr1_3:48299144-48299163 | Msa0121990:five_prime_UTR | 40.0% |
| !! | GCTGAAAAAGGTTTTAGCGG+TGG | + | chr1_3:48293227-48293246 | None:intergenic | 45.0% |
| GTGTTTGGAGACGCTGAAAA+AGG | + | chr1_3:48293239-48293258 | None:intergenic | 45.0% | |
| CGACAACTTGCAGTTACAGT+TGG | - | chr1_3:48293480-48293499 | Msa0121990:CDS | 45.0% | |
| GAAAGAGAGAAGGGAATCGT+TGG | - | chr1_3:48293503-48293522 | Msa0121990:CDS | 45.0% | |
| ! | AGAGAAGGGAATCGTTGGTT+CGG | - | chr1_3:48293508-48293527 | Msa0121990:CDS | 45.0% |
| TTGATTGTGAGGGAATGCTC+CGG | - | chr1_3:48294454-48294473 | Msa0121990:intron | 45.0% | |
| CGGTTTATGTTGATGTTCGG+AGG | - | chr1_3:48294562-48294581 | Msa0121990:CDS | 45.0% | |
| TATGTTGATGTTCGGAGGAG+AGG | - | chr1_3:48294567-48294586 | Msa0121990:CDS | 45.0% | |
| ! | ATTGTTTTCTTGTGGGGGAG+GGG | - | chr1_3:48294902-48294921 | Msa0121990:intron | 45.0% |
| AGACTAGTGCTAGCCAATGA+AGG | - | chr1_3:48294988-48295007 | Msa0121990:intron | 45.0% | |
| GCATGCAGGATTGTCCAATT+AGG | - | chr1_3:48295200-48295219 | Msa0121990:intron | 45.0% | |
| TTAACAGCAGACTCAACAGG+AGG | + | chr1_3:48295487-48295506 | None:intergenic | 45.0% | |
| GCTTTAACAGCAGACTCAAC+AGG | + | chr1_3:48295490-48295509 | None:intergenic | 45.0% | |
| GTTGAGTCTGCTGTTAAAGC+TGG | - | chr1_3:48295490-48295509 | Msa0121990:intron | 45.0% | |
| TGCGTTTAGACCTGTTCATC+TGG | + | chr1_3:48295556-48295575 | None:intergenic | 45.0% | |
| GCAATAAGCAAAGGCAATGC+AGG | + | chr1_3:48295746-48295765 | None:intergenic | 45.0% | |
| CCAAGGTGAGCAATAAGCAA+AGG | + | chr1_3:48295755-48295774 | None:intergenic | 45.0% | |
| CCTTTGCTTATTGCTCACCT+TGG | - | chr1_3:48295752-48295771 | Msa0121990:intron | 45.0% | |
| TTGCTTATTGCTCACCTTGG+GGG | - | chr1_3:48295755-48295774 | Msa0121990:intron | 45.0% | |
| CTAAGGAAAGAATGGGATGG+AGG | - | chr1_3:48295885-48295904 | Msa0121990:intron | 45.0% | |
| CTGGTGAAGATGAAGAGTTG+AGG | - | chr1_3:48296111-48296130 | Msa0121990:intron | 45.0% | |
| GGTAGCATCATTCTTGCAAG+AGG | + | chr1_3:48296167-48296186 | None:intergenic | 45.0% | |
| TAGGAAAGCCCAAACAGGTT+TGG | - | chr1_3:48296873-48296892 | Msa0121990:CDS | 45.0% | |
| AAACCCAGCCAAACCTGTTT+GGG | + | chr1_3:48296884-48296903 | None:intergenic | 45.0% | |
| AAAACCCAGCCAAACCTGTT+TGG | + | chr1_3:48296885-48296904 | None:intergenic | 45.0% | |
| AGAGAGAGTGGGAGAAGATT+CGG | - | chr1_3:48296979-48296998 | Msa0121990:intron | 45.0% | |
| AGATTCGGAGTCTGGATAGT+TGG | - | chr1_3:48296994-48297013 | Msa0121990:intron | 45.0% | |
| GATTCGGAGTCTGGATAGTT+GGG | - | chr1_3:48296995-48297014 | Msa0121990:intron | 45.0% | |
| CACTGATATAGGGTTTAGGG+AGG | - | chr1_3:48297106-48297125 | Msa0121990:intron | 45.0% | |
| TAGAGCTGGATGTTGGATTG+TGG | - | chr1_3:48297198-48297217 | Msa0121990:intron | 45.0% | |
| ! | GAGAGCTATTAGGGCTCTAA+AGG | - | chr1_3:48297325-48297344 | Msa0121990:intron | 45.0% |
| AAGTGCTTCCATTCAGCGTT+TGG | - | chr1_3:48297349-48297368 | Msa0121990:intron | 45.0% | |
| AGTGCTTCCATTCAGCGTTT+GGG | - | chr1_3:48297350-48297369 | Msa0121990:intron | 45.0% | |
| ATTTCCACCCAAACGCTGAA+TGG | + | chr1_3:48297360-48297379 | None:intergenic | 45.0% | |
| CCATCCATATGCAAAATGGC+GGG | - | chr1_3:48297384-48297403 | Msa0121990:intron | 45.0% | |
| ATAATCAGGGTAGCCTTTCG+GGG | + | chr1_3:48297707-48297726 | None:intergenic | 45.0% | |
| ! | TAGCTGATTCATCATCCCTG+AGG | + | chr1_3:48297754-48297773 | None:intergenic | 45.0% |
| TACGTTACTCTTCACCAGCA+TGG | + | chr1_3:48297831-48297850 | None:intergenic | 45.0% | |
| GTACCTGGACTTGAAGTTAC+AGG | - | chr1_3:48298078-48298097 | Msa0121990:intron | 45.0% | |
| TAGCCTGTAACTTCAAGTCC+AGG | + | chr1_3:48298084-48298103 | None:intergenic | 45.0% | |
| TGAACACAGGGTCTTGAAGA+AGG | - | chr1_3:48298236-48298255 | Msa0121990:intron | 45.0% | |
| AGCTATATTAGACAGCACCC+AGG | + | chr1_3:48298336-48298355 | None:intergenic | 45.0% | |
| GTGCTGTCTAATATAGCTGC+TGG | - | chr1_3:48298338-48298357 | Msa0121990:intron | 45.0% | |
| CGAGATACCAAATCTGATCC+TGG | - | chr1_3:48298502-48298521 | Msa0121990:intron | 45.0% | |
| AGATGCTCCAGGATCAGATT+TGG | + | chr1_3:48298512-48298531 | None:intergenic | 45.0% | |
| ! | AAATCTGATCCTGGAGCATC+TGG | - | chr1_3:48298511-48298530 | Msa0121990:intron | 45.0% |
| GTTGAAAAAGGATGCTTGCC+AGG | - | chr1_3:48298542-48298561 | Msa0121990:intron | 45.0% | |
| GATATTGAAGCTGCCAAGCT+AGG | - | chr1_3:48298590-48298609 | Msa0121990:intron | 45.0% | |
| AGGGCTTCAGTTTATAGAGC+TGG | - | chr1_3:48298610-48298629 | Msa0121990:intron | 45.0% | |
| AGAAGATGGGATTGAAGCCA+TGG | - | chr1_3:48298832-48298851 | Msa0121990:CDS | 45.0% | |
| ATGGGCTTGATGAGTAGTAG+CGG | - | chr1_3:48298933-48298952 | Msa0121990:intron | 45.0% | |
| CTACATACGACATGGAGTTG+AGG | + | chr1_3:48299010-48299029 | None:intergenic | 45.0% | |
| !!! | TATATATTTTTTAATTGATA+GGG | - | chr1_3:48295390-48295409 | Msa0121990:intron | 5.0% |
| CATGAAAATGGGATCCACGG+CGG | + | chr1_3:48293185-48293204 | None:intergenic | 50.0% | |
| GGATCGGCCATTGAAGAAGA+AGG | + | chr1_3:48293276-48293295 | None:intergenic | 50.0% | |
| ! | GTCCCTTTTGTTGGCAGGAT+CGG | + | chr1_3:48293292-48293311 | None:intergenic | 50.0% |
| ! | ATAGGGTCCCTTTTGTTGGC+AGG | + | chr1_3:48293297-48293316 | None:intergenic | 50.0% |
| ! | GTTTTCAGTTGCGAATGCGG+CGG | - | chr1_3:48293446-48293465 | Msa0121990:CDS | 50.0% |
| ! | TTTTCAGTTGCGAATGCGGC+GGG | - | chr1_3:48293447-48293466 | Msa0121990:CDS | 50.0% |
| !! | GAGAAGGGAATCGTTGGTTC+GGG | - | chr1_3:48293509-48293528 | Msa0121990:CDS | 50.0% |
| !!! | TTGGATTGGCCCCTAGCTTT+TGG | + | chr1_3:48294239-48294258 | None:intergenic | 50.0% |
| AGCTAGGGGCCAATCCAAAT+TGG | - | chr1_3:48294241-48294260 | Msa0121990:intron | 50.0% | |
| AGATGCGGGGCTACTACATT+GGG | + | chr1_3:48294939-48294958 | None:intergenic | 50.0% | |
| ATCGTAAACAGGGGCAGATG+CGG | + | chr1_3:48294954-48294973 | None:intergenic | 50.0% | |
| TGCCCGACACATTACCAAAG+AGG | + | chr1_3:48295287-48295306 | None:intergenic | 50.0% | |
| GGTGCAGTGCAGAAAAGAGT+AGG | - | chr1_3:48295418-48295437 | Msa0121990:intron | 50.0% | |
| AAGCAGCTTCAAGCAACTGC+AGG | + | chr1_3:48295670-48295689 | None:intergenic | 50.0% | |
| TGCAGTTGCTTGAAGCTGCT+TGG | - | chr1_3:48295669-48295688 | Msa0121990:intron | 50.0% | |
| TATTGCTGCAGGGAATCCAG+AGG | - | chr1_3:48295703-48295722 | Msa0121990:intron | 50.0% | |
| AAAGTGATCACTCACCCCCA+AGG | + | chr1_3:48295772-48295791 | None:intergenic | 50.0% | |
| ! | GGAGCTCTTTTCTGCAGAAC+AGG | + | chr1_3:48296048-48296067 | None:intergenic | 50.0% |
| TGTTGCTGAGCAGTGTGCTT+GGG | - | chr1_3:48296073-48296092 | Msa0121990:intron | 50.0% | |
| TGCTTGGGCACTAGGAAATG+TGG | - | chr1_3:48296088-48296107 | Msa0121990:intron | 50.0% | |
| AACTGTTAGAACAGCGGCCT+GGG | - | chr1_3:48296199-48296218 | Msa0121990:CDS | 50.0% | |
| ! | CGAAAGCGTGAGTATTTCCC+CGG | - | chr1_3:48296567-48296586 | Msa0121990:intron | 50.0% |
| AAAGCCCAAACAGGTTTGGC+TGG | - | chr1_3:48296877-48296896 | Msa0121990:CDS | 50.0% | |
| AAGCCCAAACAGGTTTGGCT+GGG | - | chr1_3:48296878-48296897 | Msa0121990:CDS | 50.0% | |
| !!! | GGGATTTGTTTTGGTGGGAG+AGG | - | chr1_3:48297015-48297034 | Msa0121990:intron | 50.0% |
| TCCAAAGTTTGGCGGAGAGA+AGG | - | chr1_3:48297241-48297260 | Msa0121990:intron | 50.0% | |
| TTGGCGGAGAGAAGGCTTAT+TGG | - | chr1_3:48297249-48297268 | Msa0121990:intron | 50.0% | |
| !! | CCCGCCATTTTGCATATGGA+TGG | + | chr1_3:48297387-48297406 | None:intergenic | 50.0% |
| !! | ACGTCCCGCCATTTTGCATA+TGG | + | chr1_3:48297391-48297410 | None:intergenic | 50.0% |
| GTTACTCTTCACCAGCATGG+TGG | + | chr1_3:48297828-48297847 | None:intergenic | 50.0% | |
| AATTGTGGTTTCGTGTGCGG+TGG | + | chr1_3:48297951-48297970 | None:intergenic | 50.0% | |
| TTCTTATGCAGGAAGCAGCC+TGG | - | chr1_3:48298315-48298334 | Msa0121990:intron | 50.0% | |
| TCTTATGCAGGAAGCAGCCT+GGG | - | chr1_3:48298316-48298335 | Msa0121990:intron | 50.0% | |
| CAAACGAGGCGGCAGAAAAA+AGG | + | chr1_3:48298421-48298440 | None:intergenic | 50.0% | |
| GGTATCTCGTCGCCTTTAGT+TGG | + | chr1_3:48298491-48298510 | None:intergenic | 50.0% | |
| CAAGTGAAACCAGATGCTCC+AGG | + | chr1_3:48298523-48298542 | None:intergenic | 50.0% | |
| TTGTGTCTGTAGGTCCTGAG+AGG | - | chr1_3:48298773-48298792 | Msa0121990:CDS | 50.0% | |
| TGTGTCTGTAGGTCCTGAGA+GGG | - | chr1_3:48298774-48298793 | Msa0121990:CDS | 50.0% | |
| AGAGGGATGCCCAATGGAAA+GGG | - | chr1_3:48298791-48298810 | Msa0121990:CDS | 50.0% | |
| !! | AGCTTTGGGCCCTTTCCATT+GGG | + | chr1_3:48298803-48298822 | None:intergenic | 50.0% |
| !! | AAGCTTTGGGCCCTTTCCAT+TGG | + | chr1_3:48298804-48298823 | None:intergenic | 50.0% |
| ACGACATGGAGTTGAGGCAA+GGG | + | chr1_3:48299004-48299023 | None:intergenic | 50.0% | |
| TACGACATGGAGTTGAGGCA+AGG | + | chr1_3:48299005-48299024 | None:intergenic | 50.0% | |
| TGGCCGATCCTGCCAACAAA+AGG | - | chr1_3:48293286-48293305 | Msa0121990:three_prime_UTR | 55.0% | |
| GGCCGATCCTGCCAACAAAA+GGG | - | chr1_3:48293287-48293306 | Msa0121990:three_prime_UTR | 55.0% | |
| ATGCGGGGCTACTACATTGG+GGG | + | chr1_3:48294937-48294956 | None:intergenic | 55.0% | |
| GATGCGGGGCTACTACATTG+GGG | + | chr1_3:48294938-48294957 | None:intergenic | 55.0% | |
| CAGATGCGGGGCTACTACAT+TGG | + | chr1_3:48294940-48294959 | None:intergenic | 55.0% | |
| TCGTAAACAGGGGCAGATGC+GGG | + | chr1_3:48294953-48294972 | None:intergenic | 55.0% | |
| ACACTGCTCAGCAACAGGTG+AGG | + | chr1_3:48296069-48296088 | None:intergenic | 55.0% | |
| CAAGCACACTGCTCAGCAAC+AGG | + | chr1_3:48296074-48296093 | None:intergenic | 55.0% | |
| CTGTTGCTGAGCAGTGTGCT+TGG | - | chr1_3:48296072-48296091 | Msa0121990:intron | 55.0% | |
| TGGGCACTAGGAAATGTGGC+TGG | - | chr1_3:48296092-48296111 | Msa0121990:intron | 55.0% | |
| CAACTGTTAGAACAGCGGCC+TGG | - | chr1_3:48296198-48296217 | Msa0121990:CDS | 55.0% | |
| GTGGGAGAAGATTCGGAGTC+TGG | - | chr1_3:48296986-48297005 | Msa0121990:intron | 55.0% | |
| !! | GTTTTGGTGGGAGAGGTCTC+AGG | - | chr1_3:48297022-48297041 | Msa0121990:intron | 55.0% |
| CAGGCTCTCGAAATCCTGAG+AGG | - | chr1_3:48297041-48297060 | Msa0121990:intron | 55.0% | |
| GCCTTCTCTCCGCCAAACTT+TGG | + | chr1_3:48297245-48297264 | None:intergenic | 55.0% | |
| GCTTCCATTCAGCGTTTGGG+TGG | - | chr1_3:48297353-48297372 | Msa0121990:intron | 55.0% | |
| TTCCATTGGGCATCCCTCTC+AGG | + | chr1_3:48298790-48298809 | None:intergenic | 55.0% | |
| GAGAGGGATGCCCAATGGAA+AGG | - | chr1_3:48298790-48298809 | Msa0121990:CDS | 55.0% | |
| CGTAAACAGGGGCAGATGCG+GGG | + | chr1_3:48294952-48294971 | None:intergenic | 60.0% | |
| GAGCAGTGTGCTTGGGCACT+AGG | - | chr1_3:48296080-48296099 | Msa0121990:intron | 60.0% | |
| GTCCTGAGAGGGATGCCCAA+TGG | - | chr1_3:48298785-48298804 | Msa0121990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 48293169 | 48299198 | 48293169 | ID=Msa0121990;Name=Msa0121990 |
| chr1_3 | mRNA | 48293169 | 48299198 | 48293169 | ID=Msa0121990-mRNA-1;Parent=Msa0121990;Name=Msa0121990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=116|0.9|0.81|1|0.8|0.81|11|249|532 |
| chr1_3 | exon | 48293169 | 48293582 | 48293169 | ID=Msa0121990-mRNA-1:exon:14585;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48293736 | 48294041 | 48293736 | ID=Msa0121990-mRNA-1:exon:14584;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48294110 | 48294212 | 48294110 | ID=Msa0121990-mRNA-1:exon:14583;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48294264 | 48294349 | 48294264 | ID=Msa0121990-mRNA-1:exon:14582;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48294460 | 48294610 | 48294460 | ID=Msa0121990-mRNA-1:exon:14581;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48295794 | 48295873 | 48295794 | ID=Msa0121990-mRNA-1:exon:14580;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48296126 | 48296310 | 48296126 | ID=Msa0121990-mRNA-1:exon:14579;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48296591 | 48296693 | 48296591 | ID=Msa0121990-mRNA-1:exon:14578;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48296803 | 48296956 | 48296803 | ID=Msa0121990-mRNA-1:exon:14577;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48298691 | 48298913 | 48298691 | ID=Msa0121990-mRNA-1:exon:14576;Parent=Msa0121990-mRNA-1 |
| chr1_3 | exon | 48299040 | 48299198 | 48299040 | ID=Msa0121990-mRNA-1:exon:14575;Parent=Msa0121990-mRNA-1 |
| chr1_3 | five_prime_UTR | 48299083 | 48299198 | 48299083 | ID=Msa0121990-mRNA-1:five_prime_utr;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48299040 | 48299082 | 48299040 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48298691 | 48298913 | 48298691 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48296803 | 48296956 | 48296803 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48296591 | 48296693 | 48296591 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48296126 | 48296310 | 48296126 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48295794 | 48295873 | 48295794 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48294460 | 48294610 | 48294460 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48294264 | 48294349 | 48294264 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48294110 | 48294212 | 48294110 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48293736 | 48294041 | 48293736 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | CDS | 48293418 | 48293582 | 48293418 | ID=Msa0121990-mRNA-1:cds;Parent=Msa0121990-mRNA-1 |
| chr1_3 | three_prime_UTR | 48293169 | 48293417 | 48293169 | ID=Msa0121990-mRNA-1:three_prime_utr;Parent=Msa0121990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
