Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185900 | XP_013468234.1 | 86.127 | 519 | 16 | 5 | 1 | 463 | 1 | 519 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185900 | sp|F4KF65|IMPA9_ARATH | 66.089 | 519 | 120 | 5 | 1 | 463 | 1 | 519 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185900 | A0A072VKX7 | 86.127 | 519 | 16 | 5 | 1 | 463 | 1 | 519 | 0.0 | 859 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa0185900 | 0.812908 | 3.346202e-51 | -8.615850e-47 |
| Msa0009760 | Msa0185900 | 0.806748 | 7.076518e-50 | -8.615850e-47 |
| Msa0027260 | Msa0185900 | 0.805448 | 1.328511e-49 | -8.615850e-47 |
| Msa0032260 | Msa0185900 | 0.830445 | 2.924938e-55 | -8.615850e-47 |
| Msa0047980 | Msa0185900 | 0.827297 | 1.691095e-54 | -8.615850e-47 |
| Msa0073670 | Msa0185900 | 0.827699 | 1.353966e-54 | -8.615850e-47 |
| Msa0094470 | Msa0185900 | 0.807090 | 5.991328e-50 | -8.615850e-47 |
| Msa0094950 | Msa0185900 | 0.800452 | 1.431845e-48 | -8.615850e-47 |
| Msa0121990 | Msa0185900 | 0.835495 | 1.623447e-56 | -8.615850e-47 |
| Msa0124340 | Msa0185900 | 0.800314 | 1.527207e-48 | -8.615850e-47 |
| Msa0127310 | Msa0185900 | 0.814003 | 1.922123e-51 | -8.615850e-47 |
| Msa0128860 | Msa0185900 | 0.808160 | 3.550305e-50 | -8.615850e-47 |
| Msa0165950 | Msa0185900 | 0.815985 | 6.980606e-52 | -8.615850e-47 |
| Msa0174730 | Msa0185900 | 0.806124 | 9.578214e-50 | -8.615850e-47 |
| Msa0183830 | Msa0185900 | 0.801347 | 9.399952e-49 | -8.615850e-47 |
| Msa0185900 | Msa0186890 | 0.800324 | 1.520443e-48 | -8.615850e-47 |
| Msa0185900 | Msa0194540 | 0.806867 | 6.678612e-50 | -8.615850e-47 |
| Msa0185900 | Msa0199690 | 0.808177 | 3.519732e-50 | -8.615850e-47 |
| Msa0185900 | Msa0199880 | 0.819710 | 1.006891e-52 | -8.615850e-47 |
| Msa0185900 | Msa0225180 | 0.800463 | 1.424419e-48 | -8.615850e-47 |
| Msa0185900 | Msa0226470 | 0.807609 | 4.648991e-50 | -8.615850e-47 |
| Msa0185900 | Msa0241780 | 0.802719 | 4.910118e-49 | -8.615850e-47 |
| Msa0185900 | Msa0241800 | 0.830720 | 2.505490e-55 | -8.615850e-47 |
| Msa0185900 | Msa0242230 | 0.800153 | 1.647534e-48 | -8.615850e-47 |
| Msa0185900 | Msa0244780 | 0.800426 | 1.449446e-48 | -8.615850e-47 |
| Msa0185900 | Msa0260240 | 0.807303 | 5.398739e-50 | -8.615850e-47 |
| Msa0185900 | Msa0260280 | 0.805979 | 1.027445e-49 | -8.615850e-47 |
| Msa0185900 | Msa0280430 | 0.800687 | 1.282134e-48 | -8.615850e-47 |
| Msa0185900 | Msa0300120 | 0.832820 | 7.601065e-56 | -8.615850e-47 |
| Msa0185900 | Msa0304260 | 0.800702 | 1.273064e-48 | -8.615850e-47 |
| Msa0185900 | Msa0319850 | 0.818688 | 1.720507e-52 | -8.615850e-47 |
| Msa0185900 | Msa0337650 | 0.807749 | 4.340695e-50 | -8.615850e-47 |
| Msa0185900 | Msa0372670 | 0.810680 | 1.021862e-50 | -8.615850e-47 |
| Msa0185900 | Msa0376040 | 0.819273 | 1.266458e-52 | -8.615850e-47 |
| Msa0185900 | Msa0441130 | 0.804474 | 2.122802e-49 | -8.615850e-47 |
| Msa0185900 | Msa0474950 | 0.814655 | 1.379683e-51 | -8.615850e-47 |
| Msa0185900 | Msa0508590 | 0.801181 | 1.016424e-48 | -8.615850e-47 |
| Msa0185900 | Msa0516040 | 0.816302 | 5.931641e-52 | -8.615850e-47 |
| Msa0185900 | Msa0526540 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0185900 | Msa0552810 | 0.825458 | 4.637179e-54 | -8.615850e-47 |
| Msa0185900 | Msa0560470 | 0.816651 | 4.955241e-52 | -8.615850e-47 |
| Msa0185900 | Msa0581070 | 0.808712 | 2.706657e-50 | -8.615850e-47 |
| Msa0185900 | Msa0615870 | 0.804004 | 2.659538e-49 | -8.615850e-47 |
| Msa0185900 | Msa0650920 | 0.808556 | 2.922182e-50 | -8.615850e-47 |
| Msa0185900 | Msa0677290 | 0.813262 | 2.798502e-51 | -8.615850e-47 |
| Msa0185900 | Msa0687630 | 0.822136 | 2.784123e-53 | -8.615850e-47 |
| Msa0185900 | Msa0692840 | 0.801462 | 8.903728e-49 | -8.615850e-47 |
| Msa0185900 | Msa0734960 | 0.803476 | 3.424069e-49 | -8.615850e-47 |
| Msa0185900 | Msa0787750 | 0.811298 | 7.508722e-51 | -8.615850e-47 |
| Msa0185900 | Msa0790850 | 0.813452 | 2.540948e-51 | -8.615850e-47 |
| Msa0185900 | Msa0824640 | 0.811049 | 8.501986e-51 | -8.615850e-47 |
| Msa0185900 | Msa0864010 | 0.820067 | 8.343787e-53 | -8.615850e-47 |
| Msa0185900 | Msa1008060 | -0.804730 | 1.877445e-49 | -8.615850e-47 |
| Msa0185900 | Msa1019240 | 0.831711 | 1.429470e-55 | -8.615850e-47 |
| Msa0185900 | Msa1019260 | 0.829167 | 5.988532e-55 | -8.615850e-47 |
| Msa0185900 | Msa1084470 | 0.807398 | 5.154811e-50 | -8.615850e-47 |
| Msa0185900 | Msa1104210 | 0.822616 | 2.154044e-53 | -8.615850e-47 |
| Msa0185900 | Msa1119200 | 0.802227 | 6.199015e-49 | -8.615850e-47 |
| Msa0185900 | Msa1126510 | 0.825586 | 4.323781e-54 | -8.615850e-47 |
| Msa0185900 | Msa1127890 | 0.810917 | 9.080358e-51 | -8.615850e-47 |
| Msa0185900 | Msa1134110 | 0.806172 | 9.358564e-50 | -8.615850e-47 |
| Msa0185900 | Msa1165870 | 0.815907 | 7.269345e-52 | -8.615850e-47 |
| Msa0185900 | Msa1166860 | 0.819487 | 1.132190e-52 | -8.615850e-47 |
| Msa0185900 | Msa1184370 | 0.812652 | 3.806033e-51 | -8.615850e-47 |
| Msa0185900 | Msa1227690 | 0.805385 | 1.369511e-49 | -8.615850e-47 |
| Msa0185900 | Msa1252740 | 0.803279 | 3.760349e-49 | -8.615850e-47 |
| Msa0185900 | Msa1295110 | 0.816631 | 5.005756e-52 | -8.615850e-47 |
| Msa0185900 | Msa1307950 | 0.811051 | 8.492980e-51 | -8.615850e-47 |
| Msa0185900 | Msa1335940 | 0.803338 | 3.655721e-49 | -8.615850e-47 |
| Msa0185900 | Msa1344850 | 0.800733 | 1.254676e-48 | -8.615850e-47 |
| Msa0185900 | Msa1379760 | 0.811900 | 5.554594e-51 | -8.615850e-47 |
| Msa0185900 | Msa1382780 | 0.802691 | 4.975193e-49 | -8.615850e-47 |
| Msa0185900 | Msa1397940 | 0.801369 | 9.301838e-49 | -8.615850e-47 |
| Msa0185900 | Msa1404190 | 0.837565 | 4.821584e-57 | -8.615850e-47 |
| Msa0185900 | Msa1448510 | 0.814019 | 1.906965e-51 | -8.615850e-47 |
| Msa0185900 | Msa1450280 | 0.808657 | 2.780918e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185900 | MtrunA17_Chr1g0181541 | 86.127 | 519 | 16 | 5 | 1 | 463 | 1 | 519 | 0.0 | 859 |
| Msa0185900 | MtrunA17_Chr2g0294881 | 28.063 | 506 | 291 | 15 | 7 | 458 | 12 | 498 | 3.08e-42 | 157 |
| Msa0185900 | MtrunA17_Chr7g0271871 | 27.723 | 505 | 293 | 16 | 7 | 458 | 14 | 499 | 7.58e-42 | 155 |
| Msa0185900 | MtrunA17_Chr4g0068051 | 28.063 | 506 | 287 | 16 | 7 | 458 | 20 | 502 | 2.85e-40 | 151 |
| Msa0185900 | MtrunA17_Chr1g0192541 | 27.273 | 506 | 294 | 15 | 7 | 458 | 14 | 499 | 1.32e-39 | 149 |
| Msa0185900 | MtrunA17_Chr4g0074371 | 28.125 | 416 | 240 | 12 | 96 | 458 | 12 | 421 | 1.29e-36 | 139 |
| Msa0185900 | MtrunA17_Chr4g0074081 | 33.226 | 310 | 170 | 10 | 96 | 380 | 12 | 309 | 5.82e-31 | 124 |
| Msa0185900 | MtrunA17_Chr4g0075691 | 26.683 | 416 | 247 | 11 | 96 | 458 | 9 | 419 | 3.37e-30 | 122 |
| Msa0185900 | MtrunA17_Chr8g0346871 | 28.212 | 397 | 228 | 11 | 116 | 460 | 15 | 406 | 2.36e-28 | 116 |
| Msa0185900 | MtrunA17_Chr4g0075701 | 28.481 | 316 | 201 | 8 | 79 | 374 | 6 | 316 | 2.86e-26 | 111 |
| Msa0185900 | MtrunA17_Chr7g0272761 | 26.339 | 448 | 260 | 13 | 47 | 458 | 75 | 488 | 7.75e-24 | 103 |
| Msa0185900 | MtrunA17_Chr7g0271821 | 25.243 | 412 | 250 | 11 | 100 | 458 | 144 | 550 | 6.24e-22 | 98.6 |
| Msa0185900 | MtrunA17_Chr7g0271831 | 28.094 | 299 | 183 | 8 | 100 | 373 | 16 | 307 | 6.13e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185900 | AT5G03070.1 | 66.089 | 519 | 120 | 5 | 1 | 463 | 1 | 519 | 0.0 | 647 |
| Msa0185900 | AT1G02690.2 | 29.109 | 505 | 291 | 15 | 7 | 458 | 12 | 502 | 1.78e-43 | 160 |
| Msa0185900 | AT1G02690.1 | 29.109 | 505 | 290 | 15 | 7 | 458 | 12 | 501 | 1.82e-43 | 160 |
| Msa0185900 | AT4G02150.1 | 27.075 | 506 | 292 | 14 | 7 | 455 | 12 | 497 | 2.52e-41 | 155 |
| Msa0185900 | AT4G16143.2 | 29.612 | 412 | 231 | 11 | 100 | 458 | 97 | 502 | 7.07e-41 | 153 |
| Msa0185900 | AT4G16143.1 | 29.612 | 412 | 231 | 11 | 100 | 458 | 97 | 502 | 7.07e-41 | 153 |
| Msa0185900 | AT1G09270.2 | 27.435 | 503 | 279 | 16 | 16 | 455 | 22 | 501 | 1.78e-39 | 149 |
| Msa0185900 | AT1G09270.1 | 27.435 | 503 | 279 | 16 | 16 | 455 | 22 | 501 | 1.78e-39 | 149 |
| Msa0185900 | AT4G02150.2 | 30.102 | 392 | 231 | 10 | 7 | 374 | 12 | 384 | 5.56e-39 | 146 |
| Msa0185900 | AT1G09270.3 | 28.261 | 414 | 238 | 12 | 95 | 455 | 12 | 419 | 1.02e-38 | 146 |
| Msa0185900 | AT3G06720.1 | 27.096 | 513 | 286 | 15 | 7 | 458 | 12 | 497 | 2.31e-38 | 146 |
| Msa0185900 | AT3G06720.2 | 27.096 | 513 | 286 | 15 | 7 | 458 | 12 | 497 | 2.31e-38 | 146 |
| Msa0185900 | AT5G49310.1 | 25.703 | 498 | 299 | 15 | 7 | 454 | 12 | 488 | 1.55e-35 | 138 |
| Msa0185900 | AT3G05720.1 | 27.358 | 424 | 231 | 16 | 98 | 455 | 77 | 489 | 1.40e-31 | 127 |
| Msa0185900 | AT3G05720.2 | 27.358 | 424 | 231 | 16 | 98 | 455 | 77 | 489 | 1.40e-31 | 127 |
| Msa0185900 | AT5G52000.1 | 25.679 | 405 | 240 | 12 | 100 | 455 | 29 | 421 | 1.47e-20 | 94.4 |
Find 119 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTAGTTGACAAGTATTT+TGG | 0.155387 | 2_1:+481117 | Msa0185900:CDS |
| TTTATAACGGTACATGAAAA+TGG | 0.169620 | 2_1:-475412 | None:intergenic |
| TGATGAAGAACAATCTATTT+TGG | 0.188365 | 2_1:+475820 | Msa0185900:CDS |
| TCTTCTTGTTCTACAAGCTT+TGG | 0.289124 | 2_1:-481030 | None:intergenic |
| CTTCTTGTTCTACAAGCTTT+GGG | 0.294666 | 2_1:-481029 | None:intergenic |
| GTGTTTGGAGACGCTGAAAA+AGG | 0.302316 | 2_1:-475454 | None:intergenic |
| CGTTTCACCTTCTTCTTCAA+TGG | 0.303674 | 2_1:+475484 | Msa0185900:exon |
| CTTTGCTTATTGCTCACCTT+GGG | 0.308315 | 2_1:+477969 | Msa0185900:CDS |
| ATAAGTTCGTTAGCAGCTTT+AGG | 0.319153 | 2_1:-478719 | None:intergenic |
| AGTGTACCTGATGATTTAAT+AGG | 0.322997 | 2_1:-475530 | None:intergenic |
| CTAGTTCAGTGTCTTTCATT+TGG | 0.323090 | 2_1:+477742 | Msa0185900:CDS |
| TCGTTAGCAGCTTTAGGATT+TGG | 0.327090 | 2_1:-478713 | None:intergenic |
| TTCCATTGGGCATCCCTCTC+AGG | 0.332933 | 2_1:-481002 | None:intergenic |
| AGGTCAATAGAATCTGTATT+CGG | 0.345718 | 2_1:+481288 | Msa0185900:three_prime_UTR |
| CAGTTTGCAATTAATGATTC+CGG | 0.348278 | 2_1:+480102 | Msa0185900:CDS |
| AGCTTTGGGCCCTTTCCATT+GGG | 0.361441 | 2_1:-481015 | None:intergenic |
| AAGCTTTGGGCCCTTTCCAT+TGG | 0.380490 | 2_1:-481016 | None:intergenic |
| TTTGGAGTCTCAGACTTCAT+TGG | 0.383796 | 2_1:+475838 | Msa0185900:CDS |
| AACTGTTAGAACAGCGGCCT+GGG | 0.384150 | 2_1:+478415 | Msa0185900:CDS |
| TGCGTTTAGACCTGTTCATC+TGG | 0.386763 | 2_1:-477769 | None:intergenic |
| ATTTGGTTCTCCAGATGAAC+AGG | 0.388197 | 2_1:+477759 | Msa0185900:CDS |
| TGAAAGACACTGAACTAGTA+TGG | 0.390710 | 2_1:-477737 | None:intergenic |
| CAAGCACACTGCTCAGCAAC+AGG | 0.395722 | 2_1:-478287 | None:intergenic |
| CCTTTGCTTATTGCTCACCT+TGG | 0.403958 | 2_1:+477968 | Msa0185900:CDS |
| AGTTTAGGTAATCTCGTTGC+TGG | 0.405199 | 2_1:+480243 | Msa0185900:CDS |
| TTCTTATGCAGGAAGCAGCC+TGG | 0.405306 | 2_1:+480530 | Msa0185900:intron |
| AAATCTGATCCTGGAGCATC+TGG | 0.405497 | 2_1:+480726 | Msa0185900:CDS |
| GGCTTTGTCTAATCTAATCA+AGG | 0.406769 | 2_1:+478436 | Msa0185900:CDS |
| TGTTGCTGAGCAGTGTGCTT+GGG | 0.409983 | 2_1:+478289 | Msa0185900:CDS |
| AGGAATGTTCTTCTAATTCA+AGG | 0.411220 | 2_1:+478347 | Msa0185900:CDS |
| AGAGAAGGGAATCGTTGGTT+CGG | 0.414285 | 2_1:+475726 | Msa0185900:CDS |
| CTGTTGCTGAGCAGTGTGCT+TGG | 0.417330 | 2_1:+478288 | Msa0185900:CDS |
| CAACTGTTAGAACAGCGGCC+TGG | 0.418690 | 2_1:+478414 | Msa0185900:CDS |
| AACGAACTTATACGTGTTGA+TGG | 0.421049 | 2_1:+478731 | Msa0185900:CDS |
| AGATGCTCCAGGATCAGATT+TGG | 0.432126 | 2_1:-480724 | None:intergenic |
| GATATTGAAGCTGCCAAGCT+AGG | 0.432212 | 2_1:+480805 | Msa0185900:CDS |
| TTATAACGGTACATGAAAAT+GGG | 0.433493 | 2_1:-475411 | None:intergenic |
| TGCAGTTGCTTGAAGCTGCT+TGG | 0.439775 | 2_1:+477885 | Msa0185900:intron |
| GGTCAATAGAATCTGTATTC+GGG | 0.442664 | 2_1:+481289 | Msa0185900:three_prime_UTR |
| GCTTTAACAGCAGACTCAAC+AGG | 0.444128 | 2_1:-477703 | None:intergenic |
| TGGCCGATCCTGCCAACAAA+AGG | 0.447342 | 2_1:+475504 | Msa0185900:CDS |
| GTGAAACGAATGCAAGTGTT+TGG | 0.450903 | 2_1:-475469 | None:intergenic |
| GAGAAGGGAATCGTTGGTTC+GGG | 0.463219 | 2_1:+475727 | Msa0185900:CDS |
| GTGTACCTGATGATTTAATA+GGG | 0.466167 | 2_1:-475529 | None:intergenic |
| TGTCTTACAAATATTGCTGC+AGG | 0.471941 | 2_1:+477908 | Msa0185900:CDS |
| ACTTATGCTGTTCTTGTACC+TGG | 0.472062 | 2_1:+480279 | Msa0185900:CDS |
| TCTTATGCAGGAAGCAGCCT+GGG | 0.472310 | 2_1:+480531 | Msa0185900:intron |
| AGGGACCCTATTAAATCATC+AGG | 0.474220 | 2_1:+475524 | Msa0185900:CDS |
| AAATGAAGACGTGAGAACTA+TGG | 0.477955 | 2_1:+481089 | Msa0185900:CDS |
| GAGCAGTGTGCTTGGGCACT+AGG | 0.480061 | 2_1:+478296 | Msa0185900:CDS |
| GTTGAGTCTGCTGTTAAAGC+TGG | 0.480604 | 2_1:+477706 | Msa0185900:CDS |
| GTAAACGCCTTAATTCTTGA+AGG | 0.484486 | 2_1:-477660 | None:intergenic |
| TCATTGGTCTTGTGATAGAC+TGG | 0.491016 | 2_1:+481359 | Msa0185900:three_prime_UTR |
| AGAGGGATGCCCAATGGAAA+GGG | 0.491824 | 2_1:+481006 | Msa0185900:CDS |
| CATTCTTGCAAGAGGTACTA+AGG | 0.496077 | 2_1:-478372 | None:intergenic |
| CGACAACTTGCAGTTACAGT+TGG | 0.497834 | 2_1:+475698 | Msa0185900:CDS |
| CTAACAGTTGAACGTCTGTA+TGG | 0.500439 | 2_1:-478401 | None:intergenic |
| GACAACTTGCAGTTACAGTT+GGG | 0.500791 | 2_1:+475699 | Msa0185900:CDS |
| GTGAAACTGAAATCTTTCCA+TGG | 0.506366 | 2_1:-481064 | None:intergenic |
| TAGGTGCCCTTCAAGAATTA+AGG | 0.508329 | 2_1:+477653 | Msa0185900:CDS |
| GCAAAACGACTTTGTAGAGT+TGG | 0.512112 | 2_1:+475749 | Msa0185900:CDS |
| AGGGCTTCAGTTTATAGAGC+TGG | 0.513753 | 2_1:+480825 | Msa0185900:CDS |
| AAGCTTGTAGAACAAGAAGA+TGG | 0.514390 | 2_1:+481033 | Msa0185900:CDS |
| GCAATAAGCAAAGGCAATGC+AGG | 0.520043 | 2_1:-477959 | None:intergenic |
| CGAGATACCAAATCTGATCC+TGG | 0.525748 | 2_1:+480717 | Msa0185900:CDS |
| TATACGTGTTGATGGAGTAT+TGG | 0.529161 | 2_1:+478739 | Msa0185900:CDS |
| AAATTTAGCTACCACCATGC+TGG | 0.529346 | 2_1:+480030 | Msa0185900:CDS |
| GGAATGTTCTTCTAATTCAA+GGG | 0.530928 | 2_1:+478348 | Msa0185900:CDS |
| TACAGTTGGGAAAGAGAGAA+GGG | 0.532165 | 2_1:+475712 | Msa0185900:CDS |
| ATATTGAAGCTGCCAAGCTA+GGG | 0.532211 | 2_1:+480806 | Msa0185900:CDS |
| TATAAACTGAAGCCCTAGCT+TGG | 0.533958 | 2_1:-480818 | None:intergenic |
| GAGAGGGATGCCCAATGGAA+AGG | 0.535122 | 2_1:+481005 | Msa0185900:CDS |
| TTTGCTTATTGCTCACCTTG+GGG | 0.539936 | 2_1:+477970 | Msa0185900:CDS |
| AGAAGATGGGATTGAAGCCA+TGG | 0.541772 | 2_1:+481047 | Msa0185900:CDS |
| GGCCGATCCTGCCAACAAAA+GGG | 0.549953 | 2_1:+475505 | Msa0185900:CDS |
| AATCAGCTACTGAAGTAGCA+TGG | 0.551163 | 2_1:+479981 | Msa0185900:CDS |
| CAAGAACAGCATAAGTTGCA+TGG | 0.554473 | 2_1:-480272 | None:intergenic |
| GGCTGAATATTCTTCATCAA+AGG | 0.554559 | 2_1:+481268 | Msa0185900:three_prime_UTR |
| AATCTGTATTCGGGATTGAG+AGG | 0.557646 | 2_1:+481298 | Msa0185900:three_prime_UTR |
| TTGCTTATTGCTCACCTTGG+GGG | 0.560167 | 2_1:+477971 | Msa0185900:CDS |
| TTACAGTTGGGAAAGAGAGA+AGG | 0.563246 | 2_1:+475711 | Msa0185900:CDS |
| GTGCTGTCTAATATAGCTGC+TGG | 0.563333 | 2_1:+480553 | Msa0185900:CDS |
| AAGAACAGCATAAGTTGCAT+GGG | 0.568828 | 2_1:-480271 | None:intergenic |
| ATCAGCTACTGAAGTAGCAT+GGG | 0.577005 | 2_1:+479982 | Msa0185900:CDS |
| GGATCGGCCATTGAAGAAGA+AGG | 0.580847 | 2_1:-475491 | None:intergenic |
| TTGTGTCTGTAGGTCCTGAG+AGG | 0.583904 | 2_1:+480988 | Msa0185900:intron |
| GAAAGAGAGAAGGGAATCGT+TGG | 0.584793 | 2_1:+475721 | Msa0185900:CDS |
| AGCTTGTAGAACAAGAAGAT+GGG | 0.586537 | 2_1:+481034 | Msa0185900:CDS |
| TACGACATGGAGTTGAGGCA+AGG | 0.591144 | 2_1:-481217 | None:intergenic |
| TAGCCTGTAACTTCAAGTCC+AGG | 0.598877 | 2_1:-480297 | None:intergenic |
| GGTGCAGTGCAGAAAAGAGT+AGG | 0.600329 | 2_1:+477634 | Msa0185900:CDS |
| TGCTTGGGCACTAGGAAATG+TGG | 0.610468 | 2_1:+478304 | Msa0185900:CDS |
| TAAACGCCTTAATTCTTGAA+GGG | 0.610932 | 2_1:-477659 | None:intergenic |
| GATTAGATTAGACAAAGCCC+AGG | 0.612593 | 2_1:-478432 | None:intergenic |
| GTCCTGAGAGGGATGCCCAA+TGG | 0.612830 | 2_1:+481000 | Msa0185900:CDS |
| CCAAGGTGAGCAATAAGCAA+AGG | 0.619253 | 2_1:-477968 | None:intergenic |
| TGGGCACTAGGAAATGTGGC+TGG | 0.620161 | 2_1:+478308 | Msa0185900:CDS |
| CAAGTGAAACCAGATGCTCC+AGG | 0.620229 | 2_1:-480735 | None:intergenic |
| GTACATGAAAATGGGATCCA+CGG | 0.623753 | 2_1:-475403 | None:intergenic |
| GGTAGCATCATTCTTGCAAG+AGG | 0.624604 | 2_1:-478380 | None:intergenic |
| TACGTCACTCTTCACCAGCA+TGG | 0.624636 | 2_1:-480044 | None:intergenic |
| GTCTTACAAATATTGCTGCA+GGG | 0.625717 | 2_1:+477909 | Msa0185900:CDS |
| GAATGTTCTTCTAATTCAAG+GGG | 0.631308 | 2_1:+478349 | Msa0185900:CDS |
| ATTTAAGTGACAAACATACA+TGG | 0.635234 | 2_1:+481247 | Msa0185900:three_prime_UTR |
| ACGACATGGAGTTGAGGCAA+GGG | 0.635732 | 2_1:-481216 | None:intergenic |
| TGTGTCTGTAGGTCCTGAGA+GGG | 0.639506 | 2_1:+480989 | Msa0185900:intron |
| GCAATTGATATATTCTAGCG+AGG | 0.651258 | 2_1:+480591 | Msa0185900:CDS |
| TGTGGAGCTTATTACCGCCG+TGG | 0.669968 | 2_1:+475386 | None:intergenic |
| CTACATACGACATGGAGTTG+AGG | 0.671337 | 2_1:-481222 | None:intergenic |
| TTAAATTGCTACATACGACA+TGG | 0.671560 | 2_1:-481230 | None:intergenic |
| ACACTGCTCAGCAACAGGTG+AGG | 0.682808 | 2_1:-478282 | None:intergenic |
| ATGGGCTTGATGAGTAGTAG+CGG | 0.685874 | 2_1:+481148 | Msa0185900:exon |
| TATTGCTGCAGGGAATCCAG+AGG | 0.701168 | 2_1:+477919 | Msa0185900:CDS |
| TTAACAGCAGACTCAACAGG+AGG | 0.709103 | 2_1:-477700 | None:intergenic |
| AGCTATATTAGACAGCACCC+AGG | 0.713093 | 2_1:-480548 | None:intergenic |
| CTGGTGAAGATGAAGAGTTG+AGG | 0.724921 | 2_1:+478327 | Msa0185900:CDS |
| ACGTTCAACTGTTAGAACAG+CGG | 0.727420 | 2_1:+478409 | Msa0185900:CDS |
| GTCACTCTTCACCAGCATGG+TGG | 0.734340 | 2_1:-480041 | None:intergenic |
| CATGAAAATGGGATCCACGG+CGG | 0.750897 | 2_1:-475400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATATATTTTTTAATTGAT+AGG | + | chr2_1:477605-477624 | Msa0185900:intron | 10.0% |
| !!! | ATATATTTTTTAATTGATAG+GGG | + | chr2_1:477607-477626 | Msa0185900:intron | 10.0% |
| !!! | TTTTATTTAGATAAATTGTT+AGG | + | chr2_1:479070-479089 | Msa0185900:intron | 10.0% |
| !! | TAATAAATCATTTAGAAATT+TGG | - | chr2_1:479698-479717 | None:intergenic | 10.0% |
| !!! | AATGATTTATTAACTTATTT+TGG | + | chr2_1:479706-479725 | Msa0185900:intron | 10.0% |
| !! | AATTAATATAACAATAATCA+GGG | - | chr2_1:479936-479955 | None:intergenic | 10.0% |
| !! | AAATTAATATAACAATAATC+AGG | - | chr2_1:479937-479956 | None:intergenic | 10.0% |
| !! | TAATATTTGATTCAATAATT+TGG | + | chr2_1:480483-480502 | Msa0185900:intron | 10.0% |
| !!! | TTTAACCTTTTATTTTTGTA+TGG | + | chr2_1:475908-475927 | Msa0185900:intron | 15.0% |
| !! | TTTCTTAGTTTATGATAATT+AGG | + | chr2_1:475935-475954 | Msa0185900:intron | 15.0% |
| !! | TTCTTAGTTTATGATAATTA+GGG | + | chr2_1:475936-475955 | Msa0185900:intron | 15.0% |
| !! | AAAGATAAAATAAAGTCAAA+TGG | + | chr2_1:476149-476168 | Msa0185900:intron | 15.0% |
| !!! | ATCTAAACTTTTAATATTGT+AGG | + | chr2_1:476725-476744 | Msa0185900:intron | 15.0% |
| !!! | TCTAAACTTTTAATATTGTA+GGG | + | chr2_1:476726-476745 | Msa0185900:intron | 15.0% |
| !!! | TATATTTTTTAATTGATAGG+GGG | + | chr2_1:477608-477627 | Msa0185900:intron | 15.0% |
| !! | CTTTATATCTATAGAAATAT+AGG | - | chr2_1:478026-478045 | None:intergenic | 15.0% |
| !! | TAAATAAGAAATGGTTTAAT+GGG | - | chr2_1:479669-479688 | None:intergenic | 15.0% |
| !! | ATAAATAAGAAATGGTTTAA+TGG | - | chr2_1:479670-479689 | None:intergenic | 15.0% |
| !!! | AAACCATTTCTTATTTATTT+TGG | + | chr2_1:479672-479691 | Msa0185900:intron | 15.0% |
| !!! | TACATGGAAATATTATTTTT+TGG | + | chr2_1:479855-479874 | Msa0185900:intron | 15.0% |
| !!! | TTTTTTGTTTCTAATAACAA+TGG | + | chr2_1:480198-480217 | Msa0185900:intron | 15.0% |
| !!! | TTTTTGTTTCTAATAACAAT+GGG | + | chr2_1:480199-480218 | Msa0185900:intron | 15.0% |
| !! | ACAAACCATACAAAAATAAA+AGG | - | chr2_1:475916-475935 | None:intergenic | 20.0% |
| !! | TAAACATCTATGAACTTATA+AGG | + | chr2_1:476408-476427 | Msa0185900:intron | 20.0% |
| !!! | TGAACTTATAAGGAATTTTT+TGG | + | chr2_1:476418-476437 | Msa0185900:intron | 20.0% |
| !!! | CTAAACTTTTAATATTGTAG+GGG | + | chr2_1:476727-476746 | Msa0185900:intron | 20.0% |
| !!! | TTCTCTTCTTAATTTTTACA+CGG | - | chr2_1:476811-476830 | None:intergenic | 20.0% |
| !! | TGTAAAAATTAAGAAGAGAA+TGG | + | chr2_1:476811-476830 | Msa0185900:intron | 20.0% |
| !! | GTAAAAATTAAGAAGAGAAT+GGG | + | chr2_1:476812-476831 | Msa0185900:intron | 20.0% |
| !! | TAAAAATTAAGAAGAGAATG+GGG | + | chr2_1:476813-476832 | Msa0185900:intron | 20.0% |
| !!! | TTCTATTCATGTAATTCTTT+TGG | - | chr2_1:476916-476935 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATTGTTTTCTTG+TGG | + | chr2_1:477111-477130 | Msa0185900:intron | 20.0% |
| !!! | GAAAAAAATTGTTTTCTTGT+GGG | + | chr2_1:477112-477131 | Msa0185900:intron | 20.0% |
| !!! | AAAAAAATTGTTTTCTTGTG+GGG | + | chr2_1:477113-477132 | Msa0185900:intron | 20.0% |
| !! | TATAGAAATATAGGTCAAAA+AGG | - | chr2_1:478017-478036 | None:intergenic | 20.0% |
| !! | CTATAGATATAAAGATTTAG+AGG | + | chr2_1:478032-478051 | Msa0185900:intron | 20.0% |
| !! | TTACAATGCTTTAACAATTA+AGG | - | chr2_1:478069-478088 | None:intergenic | 20.0% |
| !! | TATAGTTGCAAAATTAATGA+AGG | - | chr2_1:478171-478190 | None:intergenic | 20.0% |
| !! | TGTATGTAATATTCATTTGA+TGG | - | chr2_1:478470-478489 | None:intergenic | 20.0% |
| !!! | ATAACACTTCTAAAAATCTA+CGG | - | chr2_1:478586-478605 | None:intergenic | 20.0% |
| !! | ATGAAATATATTAACTGTAG+TGG | - | chr2_1:478957-478976 | None:intergenic | 20.0% |
| !!! | CAAAAGTTTTATAATCAAAG+AGG | + | chr2_1:479629-479648 | Msa0185900:intron | 20.0% |
| !! | AAATAAGAAATGGTTTAATG+GGG | - | chr2_1:479668-479687 | None:intergenic | 20.0% |
| !!! | TAATTTTATTTTATCACCTC+AGG | + | chr2_1:479951-479970 | Msa0185900:intron | 20.0% |
| !!! | AATTTTATTTTATCACCTCA+GGG | + | chr2_1:479952-479971 | Msa0185900:intron | 20.0% |
| !! | AAAATCAATCTGAATAATTG+TGG | - | chr2_1:480182-480201 | None:intergenic | 20.0% |
| !! | TGAATGTATAAATAACTACT+TGG | + | chr2_1:480861-480880 | Msa0185900:intron | 20.0% |
| !! | ACAATAAATCATAAACAACA+CGG | - | chr2_1:480972-480991 | None:intergenic | 20.0% |
| ! | TTATAACGGTACATGAAAAT+GGG | - | chr2_1:475414-475433 | None:intergenic | 25.0% |
| ! | TTTATAACGGTACATGAAAA+TGG | - | chr2_1:475415-475434 | None:intergenic | 25.0% |
| !! | TGATGAAGAACAATCTATTT+TGG | + | chr2_1:475820-475839 | Msa0185900:CDS | 25.0% |
| ! | TATGATAATTAGGGTTAGAA+TGG | + | chr2_1:475945-475964 | Msa0185900:intron | 25.0% |
| ! | TCTTTGTATCTTATAATTGC+TGG | + | chr2_1:476046-476065 | Msa0185900:intron | 25.0% |
| !! | AATAAGACGAAAACAACTTT+TGG | + | chr2_1:476227-476246 | Msa0185900:intron | 25.0% |
| ! | ACTAACTTGAATTTATCTAC+TGG | - | chr2_1:476308-476327 | None:intergenic | 25.0% |
| !! | ATAAACTAGTTTCAACACAT+AGG | - | chr2_1:476345-476364 | None:intergenic | 25.0% |
| ! | TGTATCTCATTTGTTCTTAT+AGG | + | chr2_1:476364-476383 | Msa0185900:intron | 25.0% |
| ! | ATGTACTTGAATCAGTTAAT+AGG | + | chr2_1:476514-476533 | Msa0185900:intron | 25.0% |
| ! | ATTTATTTGTGTCTTCTAAC+AGG | - | chr2_1:476618-476637 | None:intergenic | 25.0% |
| !! | ACCTTTAAATATTGATTGTG+AGG | + | chr2_1:476660-476679 | Msa0185900:intron | 25.0% |
| !! | CCTTTAAATATTGATTGTGA+GGG | + | chr2_1:476661-476680 | Msa0185900:intron | 25.0% |
| !! | ATCAACTAAATTTTATCGAC+CGG | - | chr2_1:476693-476712 | None:intergenic | 25.0% |
| !! | TCTCTTCTTAATTTTTACAC+GGG | - | chr2_1:476810-476829 | None:intergenic | 25.0% |
| ! | AAAAATTAAGAAGAGAATGG+GGG | + | chr2_1:476814-476833 | Msa0185900:intron | 25.0% |
| ! | TTCATAACTATTATGTGTGT+AGG | - | chr2_1:476887-476906 | None:intergenic | 25.0% |
| ! | TACACACATAATAGTTATGA+AGG | + | chr2_1:476886-476905 | Msa0185900:intron | 25.0% |
| !!! | TCAGTTTTGACTTTAACTAT+TGG | - | chr2_1:476994-477013 | None:intergenic | 25.0% |
| !! | AAAAAATTGTTTTCTTGTGG+GGG | + | chr2_1:477114-477133 | Msa0185900:intron | 25.0% |
| !! | TTAAATAGCTTTACCTTCAT+TGG | - | chr2_1:477221-477240 | None:intergenic | 25.0% |
| ! | TGTAAGATATCTACAATCTA+AGG | + | chr2_1:478084-478103 | Msa0185900:intron | 25.0% |
| ! | GAAGAACTTCATTATAATGT+TGG | - | chr2_1:478195-478214 | None:intergenic | 25.0% |
| ! | CATTATAATGAAGTTCTTCA+AGG | + | chr2_1:478196-478215 | Msa0185900:intron | 25.0% |
| ! | CATATAAAAACACATGTATG+TGG | - | chr2_1:478668-478687 | None:intergenic | 25.0% |
| ! | ATTTCAGTATGTTTGCATAT+AGG | + | chr2_1:478688-478707 | Msa0185900:intron | 25.0% |
| ! | TTTCAGTATGTTTGCATATA+GGG | + | chr2_1:478689-478708 | Msa0185900:intron | 25.0% |
| !! | AAACTATTCTGTTCTGTTTT+TGG | + | chr2_1:478983-479002 | Msa0185900:intron | 25.0% |
| ! | TGGCCAAAATAAATAAGAAA+TGG | - | chr2_1:479678-479697 | None:intergenic | 25.0% |
| !! | TGAAGTTCATGAAATTTTTG+TGG | + | chr2_1:479730-479749 | Msa0185900:intron | 25.0% |
| ! | AGTGAACTTTATGATTATAG+TGG | - | chr2_1:479768-479787 | None:intergenic | 25.0% |
| !! | TGTAGTCATAATTTTACTAG+AGG | - | chr2_1:479839-479858 | None:intergenic | 25.0% |
| ! | CTAGTAAAATTATGACTACA+TGG | + | chr2_1:479839-479858 | Msa0185900:intron | 25.0% |
| ! | CATACTGTTTGATTAAAATG+CGG | - | chr2_1:480355-480374 | None:intergenic | 25.0% |
| ! | AATAACTACTTGGTAGATTA+TGG | + | chr2_1:480871-480890 | Msa0185900:intron | 25.0% |
| ! | AATAAATCATAAACAACACG+GGG | - | chr2_1:480970-480989 | None:intergenic | 25.0% |
| ! | CAATAAATCATAAACAACAC+GGG | - | chr2_1:480971-480990 | None:intergenic | 25.0% |
| ! | TTATGATTTATTGTGTCTGT+AGG | + | chr2_1:480978-480997 | Msa0185900:intron | 25.0% |
| ! | ATTTAAGTGACAAACATACA+TGG | + | chr2_1:481247-481266 | Msa0185900:three_prime_UTR | 25.0% |
| !! | AGGTTTGATAAAATTTTCTG+CGG | + | chr2_1:481318-481337 | Msa0185900:three_prime_UTR | 25.0% |
| !!! | CGGTGGTTCTTTTTTTATAA+CGG | - | chr2_1:475428-475447 | None:intergenic | 30.0% |
| GTGTACCTGATGATTTAATA+GGG | - | chr2_1:475532-475551 | None:intergenic | 30.0% | |
| AGTGTACCTGATGATTTAAT+AGG | - | chr2_1:475533-475552 | None:intergenic | 30.0% | |
| ATTTCATACAACATAGCTCT+AGG | + | chr2_1:475592-475611 | Msa0185900:intron | 30.0% | |
| !!! | AATTGGACTGGTGAATTTTT+TGG | + | chr2_1:475973-475992 | Msa0185900:intron | 30.0% |
| ATCTTATAATTGCTGGTGAT+AGG | + | chr2_1:476053-476072 | Msa0185900:intron | 30.0% | |
| TCTTATAATTGCTGGTGATA+GGG | + | chr2_1:476054-476073 | Msa0185900:intron | 30.0% | |
| TTCTCAAGAAATTGAGCTAT+AGG | + | chr2_1:476092-476111 | Msa0185900:intron | 30.0% | |
| TCTCAAGAAATTGAGCTATA+GGG | + | chr2_1:476093-476112 | Msa0185900:intron | 30.0% | |
| TGTTTCCATATAAGCTATCT+TGG | + | chr2_1:476192-476211 | Msa0185900:intron | 30.0% | |
| AACTATGAACCAATTTGGAT+TGG | - | chr2_1:476470-476489 | None:intergenic | 30.0% | |
| ACACAAACTATGAACCAATT+TGG | - | chr2_1:476475-476494 | None:intergenic | 30.0% | |
| CCCTCACAATCAATATTTAA+AGG | - | chr2_1:476664-476683 | None:intergenic | 30.0% | |
| AAAATTAAGAAGAGAATGGG+GGG | + | chr2_1:476815-476834 | Msa0185900:intron | 30.0% | |
| TGTGTGAAGAATTTGATTGA+AGG | + | chr2_1:476852-476871 | Msa0185900:intron | 30.0% | |
| GTGTGAAGAATTTGATTGAA+GGG | + | chr2_1:476853-476872 | Msa0185900:intron | 30.0% | |
| AGTAACTGAACACATAACAA+AGG | + | chr2_1:476959-476978 | Msa0185900:intron | 30.0% | |
| !!! | GTTTTGACTTTAACTATTGG+TGG | - | chr2_1:476991-477010 | None:intergenic | 30.0% |
| !! | AGTATGTCTAGTTTGTTTGA+CGG | + | chr2_1:477057-477076 | Msa0185900:intron | 30.0% |
| ATCTTTGTTCATCGTAAACA+GGG | - | chr2_1:477181-477200 | None:intergenic | 30.0% | |
| AATCTTTGTTCATCGTAAAC+AGG | - | chr2_1:477182-477201 | None:intergenic | 30.0% | |
| TGCTAATCATGTGTCAAATA+TGG | - | chr2_1:477301-477320 | None:intergenic | 30.0% | |
| TGATTAGCAAATAGTTGTGT+TGG | + | chr2_1:477312-477331 | Msa0185900:intron | 30.0% | |
| TGATAATTTCATATGCATGC+AGG | + | chr2_1:477402-477421 | Msa0185900:intron | 30.0% | |
| !!! | TTTTTTAATTGATAGGGGGA+AGG | + | chr2_1:477612-477631 | Msa0185900:intron | 30.0% |
| !! | TTTTTAATTGATAGGGGGAA+GGG | + | chr2_1:477613-477632 | Msa0185900:intron | 30.0% |
| TAAACGCCTTAATTCTTGAA+GGG | - | chr2_1:477662-477681 | None:intergenic | 30.0% | |
| AGAGCATATGGAATCATTAA+TGG | + | chr2_1:477815-477834 | Msa0185900:intron | 30.0% | |
| TCTACAATCTAAGGAAAGAA+TGG | + | chr2_1:478093-478112 | Msa0185900:intron | 30.0% | |
| CTACAATCTAAGGAAAGAAT+GGG | + | chr2_1:478094-478113 | Msa0185900:intron | 30.0% | |
| AAAAAGAATAGGATGCAAGT+AGG | - | chr2_1:478136-478155 | None:intergenic | 30.0% | |
| !! | GGGCATTTTAGAAAAAGAAT+AGG | - | chr2_1:478147-478166 | None:intergenic | 30.0% |
| GTTGCAAAATTAATGAAGGT+GGG | - | chr2_1:478167-478186 | None:intergenic | 30.0% | |
| AGTTGCAAAATTAATGAAGG+TGG | - | chr2_1:478168-478187 | None:intergenic | 30.0% | |
| ! | GGACTACTTATGAATTTTGA+AGG | - | chr2_1:478243-478262 | None:intergenic | 30.0% |
| AGGAATGTTCTTCTAATTCA+AGG | + | chr2_1:478347-478366 | Msa0185900:CDS | 30.0% | |
| GGAATGTTCTTCTAATTCAA+GGG | + | chr2_1:478348-478367 | Msa0185900:CDS | 30.0% | |
| GAATGTTCTTCTAATTCAAG+GGG | + | chr2_1:478349-478368 | Msa0185900:CDS | 30.0% | |
| ! | ATTATGGTTTTTGTGGAAGA+TGG | + | chr2_1:478636-478655 | Msa0185900:intron | 30.0% |
| ! | CAGTTACTTTATAACATGCA+TGG | + | chr2_1:478857-478876 | Msa0185900:intron | 30.0% |
| !! | TTATGTTGCTTTATTGTGCA+TGG | + | chr2_1:478889-478908 | Msa0185900:intron | 30.0% |
| !! | TATGTTGCTTTATTGTGCAT+GGG | + | chr2_1:478890-478909 | Msa0185900:intron | 30.0% |
| ! | GATTGGAGTTCTAATAGATT+TGG | + | chr2_1:479156-479175 | Msa0185900:intron | 30.0% |
| ! | TTTGGTTCATCACTGATATA+GGG | + | chr2_1:479312-479331 | Msa0185900:intron | 30.0% |
| TTATCAACTAGTATTAGAGC+TGG | + | chr2_1:479400-479419 | Msa0185900:intron | 30.0% | |
| CTAATAGCTCTCTTATATTC+GGG | - | chr2_1:479533-479552 | None:intergenic | 30.0% | |
| CCTAATAGCTCTCTTATATT+CGG | - | chr2_1:479534-479553 | None:intergenic | 30.0% | |
| CGAATATAAGAGAGCTATTA+GGG | + | chr2_1:479532-479551 | Msa0185900:intron | 30.0% | |
| CATAAAGTTCACTTTCCTAT+AGG | + | chr2_1:479775-479794 | Msa0185900:intron | 30.0% | |
| ! | TTTTAAGCTCAGAAACCTAT+AGG | - | chr2_1:479793-479812 | None:intergenic | 30.0% |
| CAGTTTGCAATTAATGATTC+CGG | + | chr2_1:480102-480121 | Msa0185900:CDS | 30.0% | |
| AAAATTCTCGAGATTCTTAC+CGG | - | chr2_1:480124-480143 | None:intergenic | 30.0% | |
| !! | CGCATTTTAATCAAACAGTA+TGG | + | chr2_1:480353-480372 | Msa0185900:intron | 30.0% |
| !!! | AGAGCTTTTTTTTCTTATGC+AGG | + | chr2_1:480519-480538 | Msa0185900:intron | 30.0% |
| TTCCTTTCTTATATCAAACG+AGG | - | chr2_1:480650-480669 | None:intergenic | 30.0% | |
| AAGGAAGTTGCTTACATATT+AGG | + | chr2_1:480664-480683 | Msa0185900:intron | 30.0% | |
| CTAACCAAATCAATAAAACC+TGG | - | chr2_1:480778-480797 | None:intergenic | 30.0% | |
| ! | AGTCTAGTTGACAAGTATTT+TGG | + | chr2_1:481117-481136 | Msa0185900:CDS | 30.0% |
| TTAAATTGCTACATACGACA+TGG | - | chr2_1:481233-481252 | None:intergenic | 30.0% | |
| AGGTCAATAGAATCTGTATT+CGG | + | chr2_1:481288-481307 | Msa0185900:three_prime_UTR | 30.0% | |
| ! | TGTGGTTATACTCTTTTCAT+TGG | + | chr2_1:481343-481362 | Msa0185900:three_prime_UTR | 30.0% |
| !!! | ACTGGAAGTGTATTTTTAGT+AGG | + | chr2_1:481377-481396 | Msa0185900:three_prime_UTR | 30.0% |
| ! | TTTAATAGGGTCCCTTTTGT+TGG | - | chr2_1:475519-475538 | None:intergenic | 35.0% |
| !! | TTTGTTTTCAGTTGCGAATG+CGG | + | chr2_1:475661-475680 | Msa0185900:intron | 35.0% |
| AAATTGAGCTATAGGGCTTA+CGG | + | chr2_1:476100-476119 | Msa0185900:intron | 35.0% | |
| GCTTTCCAAGATAGCTTATA+TGG | - | chr2_1:476200-476219 | None:intergenic | 35.0% | |
| !! | AGACTGTTCTAGAGAACTTA+TGG | - | chr2_1:476271-476290 | None:intergenic | 35.0% |
| CAAGTTAGTCAAATCCTAAC+AGG | + | chr2_1:476319-476338 | Msa0185900:intron | 35.0% | |
| AGATGAAGATTCCAAAAGCT+AGG | + | chr2_1:476442-476461 | Msa0185900:intron | 35.0% | |
| GATGAAGATTCCAAAAGCTA+GGG | + | chr2_1:476443-476462 | Msa0185900:intron | 35.0% | |
| ATGAAGATTCCAAAAGCTAG+GGG | + | chr2_1:476444-476463 | Msa0185900:intron | 35.0% | |
| ATAGCAAGAACTGAACTAAC+AGG | - | chr2_1:476584-476603 | None:intergenic | 35.0% | |
| CAAGAAGAAGAGACAAAGAA+CGG | + | chr2_1:476759-476778 | Msa0185900:intron | 35.0% | |
| GAACGGTTTATGTTGATGTT+CGG | + | chr2_1:476776-476795 | Msa0185900:intron | 35.0% | |
| TGAAGAATTTGATTGAAGGG+TGG | + | chr2_1:476856-476875 | Msa0185900:intron | 35.0% | |
| GAAGAATTTGATTGAAGGGT+GGG | + | chr2_1:476857-476876 | Msa0185900:intron | 35.0% | |
| !! | GTATGTCTAGTTTGTTTGAC+GGG | + | chr2_1:477058-477077 | Msa0185900:intron | 35.0% |
| !! | TATGTCTAGTTTGTTTGACG+GGG | + | chr2_1:477059-477078 | Msa0185900:intron | 35.0% |
| TCTTTGTTCATCGTAAACAG+GGG | - | chr2_1:477180-477199 | None:intergenic | 35.0% | |
| !! | TTCTGAATCTTCTGGTTTAG+AGG | + | chr2_1:477361-477380 | Msa0185900:intron | 35.0% |
| !! | TCTGAATCTTCTGGTTTAGA+GGG | + | chr2_1:477362-477381 | Msa0185900:intron | 35.0% |
| CATCAATCTTAGTGCCTAAT+TGG | - | chr2_1:477433-477452 | None:intergenic | 35.0% | |
| ! | AGTGTTTTCTCTTACCTCTT+TGG | + | chr2_1:477486-477505 | Msa0185900:intron | 35.0% |
| !! | TTACCTCTTTGGTAATGTGT+CGG | + | chr2_1:477497-477516 | Msa0185900:intron | 35.0% |
| ! | TTGAAGATTTTCTCAGTCTG+TGG | - | chr2_1:477534-477553 | None:intergenic | 35.0% |
| GTAAACGCCTTAATTCTTGA+AGG | - | chr2_1:477663-477682 | None:intergenic | 35.0% | |
| TGAAAGACACTGAACTAGTA+TGG | - | chr2_1:477740-477759 | None:intergenic | 35.0% | |
| CTAGTTCAGTGTCTTTCATT+TGG | + | chr2_1:477742-477761 | Msa0185900:CDS | 35.0% | |
| TGTCTTACAAATATTGCTGC+AGG | + | chr2_1:477908-477927 | Msa0185900:CDS | 35.0% | |
| GTCTTACAAATATTGCTGCA+GGG | + | chr2_1:477909-477928 | Msa0185900:CDS | 35.0% | |
| AATCTAAGGAAAGAATGGGA+TGG | + | chr2_1:478098-478117 | Msa0185900:intron | 35.0% | |
| ! | GGCTTTGTCTAATCTAATCA+AGG | + | chr2_1:478436-478455 | Msa0185900:CDS | 35.0% |
| ! | TATGTACTCATCAGCTTTTG+TGG | + | chr2_1:478603-478622 | Msa0185900:intron | 35.0% |
| ! | CTTGTGCATTATGGTTTTTG+TGG | + | chr2_1:478629-478648 | Msa0185900:intron | 35.0% |
| ATAAGTTCGTTAGCAGCTTT+AGG | - | chr2_1:478722-478741 | None:intergenic | 35.0% | |
| AACGAACTTATACGTGTTGA+TGG | + | chr2_1:478731-478750 | Msa0185900:CDS | 35.0% | |
| ! | TATACGTGTTGATGGAGTAT+TGG | + | chr2_1:478739-478758 | Msa0185900:CDS | 35.0% |
| ATATAACAAAGGTAAGTCCG+GGG | - | chr2_1:478803-478822 | None:intergenic | 35.0% | |
| GATATAACAAAGGTAAGTCC+GGG | - | chr2_1:478804-478823 | None:intergenic | 35.0% | |
| GGATATAACAAAGGTAAGTC+CGG | - | chr2_1:478805-478824 | None:intergenic | 35.0% | |
| ! | TGCTGACTAGGATATAACAA+AGG | - | chr2_1:478814-478833 | None:intergenic | 35.0% |
| GAAGAAGTTAGTGTAGTTTG+TGG | + | chr2_1:479128-479147 | Msa0185900:intron | 35.0% | |
| ! | TGTAGTTTGTGGTTGTTGAT+TGG | + | chr2_1:479139-479158 | Msa0185900:intron | 35.0% |
| CTAATAGATTTGGCAGAAGT+AGG | + | chr2_1:479166-479185 | Msa0185900:intron | 35.0% | |
| !! | TGGATAGTTGGGATTTGTTT+TGG | + | chr2_1:479222-479241 | Msa0185900:intron | 35.0% |
| !!! | ATAGTTGGGATTTGTTTTGG+TGG | + | chr2_1:479225-479244 | Msa0185900:intron | 35.0% |
| !!! | TAGTTGGGATTTGTTTTGGT+GGG | + | chr2_1:479226-479245 | Msa0185900:intron | 35.0% |
| ATCAGTGATGAACCAAAGTT+AGG | - | chr2_1:479309-479328 | None:intergenic | 35.0% | |
| ! | CTTTGGTTCATCACTGATAT+AGG | + | chr2_1:479311-479330 | Msa0185900:intron | 35.0% |
| TCATCACTGATATAGGGTTT+AGG | + | chr2_1:479318-479337 | Msa0185900:intron | 35.0% | |
| CATCACTGATATAGGGTTTA+GGG | + | chr2_1:479319-479338 | Msa0185900:intron | 35.0% | |
| TTGAAGACGATTCCAAAGTT+TGG | + | chr2_1:479446-479465 | Msa0185900:intron | 35.0% | |
| ATCAAAGTACAACTCCTCAT+TGG | - | chr2_1:479498-479517 | None:intergenic | 35.0% | |
| CCGAATATAAGAGAGCTATT+AGG | + | chr2_1:479531-479550 | Msa0185900:intron | 35.0% | |
| AAGAAATGGTTTAATGGGGA+GGG | - | chr2_1:479664-479683 | None:intergenic | 35.0% | |
| TAAGAAATGGTTTAATGGGG+AGG | - | chr2_1:479665-479684 | None:intergenic | 35.0% | |
| GAGCTTAAAATCAGAAGTGA+TGG | + | chr2_1:479803-479822 | Msa0185900:intron | 35.0% | |
| ! | TTGGTAACAGCTGGATAAAT+CGG | - | chr2_1:479888-479907 | None:intergenic | 35.0% |
| ! | TTATGTCAATTGGTAACAGC+TGG | - | chr2_1:479897-479916 | None:intergenic | 35.0% |
| TTCGGGGATATTATGTCAAT+TGG | - | chr2_1:479907-479926 | None:intergenic | 35.0% | |
| ATTGACATAATATCCCCGAA+AGG | + | chr2_1:479907-479926 | Msa0185900:intron | 35.0% | |
| AATAATTGTGGTTTCGTGTG+CGG | - | chr2_1:480170-480189 | None:intergenic | 35.0% | |
| TAAACTTCGCAAAACCTACA+GGG | - | chr2_1:480229-480248 | None:intergenic | 35.0% | |
| AAGAACAGCATAAGTTGCAT+GGG | - | chr2_1:480274-480293 | None:intergenic | 35.0% | |
| ! | ACATTTTATCAGAGCTTGCA+TGG | - | chr2_1:480423-480442 | None:intergenic | 35.0% |
| AATGTCTGAATAGTGAACAC+AGG | + | chr2_1:480438-480457 | Msa0185900:intron | 35.0% | |
| ATGTCTGAATAGTGAACACA+GGG | + | chr2_1:480439-480458 | Msa0185900:intron | 35.0% | |
| GCAATTGATATATTCTAGCG+AGG | + | chr2_1:480591-480610 | Msa0185900:CDS | 35.0% | |
| ! | GAAAAAAGGTGCAATAGCAA+AGG | - | chr2_1:480622-480641 | None:intergenic | 35.0% |
| CTTTCTTATATCAAACGAGG+CGG | - | chr2_1:480647-480666 | None:intergenic | 35.0% | |
| ! | CTGGTTTCACTTGTTGAAAA+AGG | + | chr2_1:480745-480764 | Msa0185900:intron | 35.0% |
| !!! | CTTGCCAGGTTTTATTGATT+TGG | + | chr2_1:480771-480790 | Msa0185900:intron | 35.0% |
| GGTTTAGATCTCAAAGAATG+TGG | - | chr2_1:480949-480968 | None:intergenic | 35.0% | |
| CTTCTTGTTCTACAAGCTTT+GGG | - | chr2_1:481032-481051 | None:intergenic | 35.0% | |
| TCTTCTTGTTCTACAAGCTT+TGG | - | chr2_1:481033-481052 | None:intergenic | 35.0% | |
| AAGCTTGTAGAACAAGAAGA+TGG | + | chr2_1:481033-481052 | Msa0185900:CDS | 35.0% | |
| AGCTTGTAGAACAAGAAGAT+GGG | + | chr2_1:481034-481053 | Msa0185900:CDS | 35.0% | |
| GTGAAACTGAAATCTTTCCA+TGG | - | chr2_1:481067-481086 | None:intergenic | 35.0% | |
| AAATGAAGACGTGAGAACTA+TGG | + | chr2_1:481089-481108 | Msa0185900:CDS | 35.0% | |
| !! | AGTTGACAAGTATTTTGGAG+AGG | + | chr2_1:481122-481141 | Msa0185900:CDS | 35.0% |
| !! | AAGTATTTTGGAGAGGACTA+TGG | + | chr2_1:481129-481148 | Msa0185900:CDS | 35.0% |
| !! | AGTATTTTGGAGAGGACTAT+GGG | + | chr2_1:481130-481149 | Msa0185900:CDS | 35.0% |
| GGCTGAATATTCTTCATCAA+AGG | + | chr2_1:481268-481287 | Msa0185900:three_prime_UTR | 35.0% | |
| GGTCAATAGAATCTGTATTC+GGG | + | chr2_1:481289-481308 | Msa0185900:three_prime_UTR | 35.0% | |
| ! | ATAAAATTTTCTGCGGCTTG+TGG | + | chr2_1:481325-481344 | Msa0185900:three_prime_UTR | 35.0% |
| GTACATGAAAATGGGATCCA+CGG | - | chr2_1:475406-475425 | None:intergenic | 40.0% | |
| !! | GACGCTGAAAAAGGTTTTAG+CGG | - | chr2_1:475448-475467 | None:intergenic | 40.0% |
| GTGAAACGAATGCAAGTGTT+TGG | - | chr2_1:475472-475491 | None:intergenic | 40.0% | |
| CGTTTCACCTTCTTCTTCAA+TGG | + | chr2_1:475484-475503 | Msa0185900:exon | 40.0% | |
| AGGGACCCTATTAAATCATC+AGG | + | chr2_1:475524-475543 | Msa0185900:CDS | 40.0% | |
| ! | GCTCTAGGTTTATGCTTTCT+TGG | + | chr2_1:475607-475626 | Msa0185900:intron | 40.0% |
| GACAACTTGCAGTTACAGTT+GGG | + | chr2_1:475699-475718 | Msa0185900:CDS | 40.0% | |
| TTACAGTTGGGAAAGAGAGA+AGG | + | chr2_1:475711-475730 | Msa0185900:CDS | 40.0% | |
| TACAGTTGGGAAAGAGAGAA+GGG | + | chr2_1:475712-475731 | Msa0185900:CDS | 40.0% | |
| GCAAAACGACTTTGTAGAGT+TGG | + | chr2_1:475749-475768 | Msa0185900:CDS | 40.0% | |
| ! | TTTGGAGTCTCAGACTTCAT+TGG | + | chr2_1:475838-475857 | Msa0185900:CDS | 40.0% |
| GGGTTAGAATGGCTTCAAAT+TGG | + | chr2_1:475956-475975 | Msa0185900:intron | 40.0% | |
| AGAATGGCTTCAAATTGGAC+TGG | + | chr2_1:475961-475980 | Msa0185900:intron | 40.0% | |
| ATAATTGCTGGTGATAGGGT+TGG | + | chr2_1:476058-476077 | Msa0185900:intron | 40.0% | |
| TTTCAACACATAGGCCTGTT+AGG | - | chr2_1:476336-476355 | None:intergenic | 40.0% | |
| ! | AAATTGTTTTCTTGTGGGGG+AGG | + | chr2_1:477117-477136 | Msa0185900:intron | 40.0% |
| ! | AATTGTTTTCTTGTGGGGGA+GGG | + | chr2_1:477118-477137 | Msa0185900:intron | 40.0% |
| ! | CAAATAGTTGTGTTGGTCTG+AGG | + | chr2_1:477319-477338 | Msa0185900:intron | 40.0% |
| ! | ACCAAGTGTTCTGAATCTTC+TGG | + | chr2_1:477353-477372 | Msa0185900:intron | 40.0% |
| ACCAGAAGATTCAGAACACT+TGG | - | chr2_1:477357-477376 | None:intergenic | 40.0% | |
| !! | CTGAATCTTCTGGTTTAGAG+GGG | + | chr2_1:477363-477382 | Msa0185900:intron | 40.0% |
| !! | TGAATCTTCTGGTTTAGAGG+GGG | + | chr2_1:477364-477383 | Msa0185900:intron | 40.0% |
| !! | TACCTCTTTGGTAATGTGTC+GGG | + | chr2_1:477498-477517 | Msa0185900:intron | 40.0% |
| TAGGTGCCCTTCAAGAATTA+AGG | + | chr2_1:477653-477672 | Msa0185900:CDS | 40.0% | |
| !! | ATTTGGTTCTCCAGATGAAC+AGG | + | chr2_1:477759-477778 | Msa0185900:CDS | 40.0% |
| TGCATGTTATGCAGAGCATA+TGG | + | chr2_1:477803-477822 | Msa0185900:intron | 40.0% | |
| !! | AGCAAAGCTTTTGTTTCCTC+TGG | - | chr2_1:477938-477957 | None:intergenic | 40.0% |
| CTTTGCTTATTGCTCACCTT+GGG | + | chr2_1:477969-477988 | Msa0185900:CDS | 40.0% | |
| TTTGCTTATTGCTCACCTTG+GGG | + | chr2_1:477970-477989 | Msa0185900:CDS | 40.0% | |
| TAAGGAAAGAATGGGATGGA+GGG | + | chr2_1:478102-478121 | Msa0185900:intron | 40.0% | |
| !! | CATTCTTGCAAGAGGTACTA+AGG | - | chr2_1:478375-478394 | None:intergenic | 40.0% |
| CTAACAGTTGAACGTCTGTA+TGG | - | chr2_1:478404-478423 | None:intergenic | 40.0% | |
| ACGTTCAACTGTTAGAACAG+CGG | + | chr2_1:478409-478428 | Msa0185900:CDS | 40.0% | |
| GATTAGATTAGACAAAGCCC+AGG | - | chr2_1:478435-478454 | None:intergenic | 40.0% | |
| TCTTCTTTGCTTGTACTGTG+TGG | + | chr2_1:478559-478578 | Msa0185900:intron | 40.0% | |
| TTGTGGTCTCTTGTGCATTA+TGG | + | chr2_1:478620-478639 | Msa0185900:intron | 40.0% | |
| !! | TCGTTAGCAGCTTTAGGATT+TGG | - | chr2_1:478716-478735 | None:intergenic | 40.0% |
| ! | AACAGTGAAACATGCTGACT+AGG | - | chr2_1:478826-478845 | None:intergenic | 40.0% |
| ATTGTTAGGAAAGCCCAAAC+AGG | + | chr2_1:479084-479103 | Msa0185900:intron | 40.0% | |
| AGTAGGCTATAAAGAGAGAG+TGG | + | chr2_1:479183-479202 | Msa0185900:intron | 40.0% | |
| GTAGGCTATAAAGAGAGAGT+GGG | + | chr2_1:479184-479203 | Msa0185900:intron | 40.0% | |
| AGGCTATTGATATTCCTCTC+AGG | - | chr2_1:479274-479293 | None:intergenic | 40.0% | |
| AAGTTAGGAAGGACAAACAC+AGG | - | chr2_1:479294-479313 | None:intergenic | 40.0% | |
| GTGTTTGTCCTTCCTAACTT+TGG | + | chr2_1:479294-479313 | Msa0185900:intron | 40.0% | |
| GTGATGAACCAAAGTTAGGA+AGG | - | chr2_1:479305-479324 | None:intergenic | 40.0% | |
| CTAGTATTAGAGCTGGATGT+TGG | + | chr2_1:479407-479426 | Msa0185900:intron | 40.0% | |
| AAGACGATTCCAAAGTTTGG+CGG | + | chr2_1:479449-479468 | Msa0185900:intron | 40.0% | |
| ! | TTATTGGTTGCTGACCAATG+AGG | + | chr2_1:479481-479500 | Msa0185900:intron | 40.0% |
| CTTATATTCGGGTGTTCTGT+TGG | - | chr2_1:479522-479541 | None:intergenic | 40.0% | |
| !! | AGAGCTATTAGGGCTCTAAA+GGG | + | chr2_1:479542-479561 | Msa0185900:intron | 40.0% |
| GACACCATCCATATGCAAAA+TGG | + | chr2_1:479596-479615 | Msa0185900:intron | 40.0% | |
| ACCATCCATATGCAAAATGG+CGG | + | chr2_1:479599-479618 | Msa0185900:intron | 40.0% | |
| AATAATCAGGGTAGCCTTTC+GGG | - | chr2_1:479924-479943 | None:intergenic | 40.0% | |
| CAATAATCAGGGTAGCCTTT+CGG | - | chr2_1:479925-479944 | None:intergenic | 40.0% | |
| AATCAGCTACTGAAGTAGCA+TGG | + | chr2_1:479981-480000 | Msa0185900:CDS | 40.0% | |
| ATCAGCTACTGAAGTAGCAT+GGG | + | chr2_1:479982-480001 | Msa0185900:CDS | 40.0% | |
| AAATTTAGCTACCACCATGC+TGG | + | chr2_1:480030-480049 | Msa0185900:CDS | 40.0% | |
| TAACAATGGGAAATCCCTGT+AGG | + | chr2_1:480212-480231 | Msa0185900:intron | 40.0% | |
| CTAAACTTCGCAAAACCTAC+AGG | - | chr2_1:480230-480249 | None:intergenic | 40.0% | |
| ! | CTGTAGGTTTTGCGAAGTTT+AGG | + | chr2_1:480228-480247 | Msa0185900:intron | 40.0% |
| AGTTTAGGTAATCTCGTTGC+TGG | + | chr2_1:480243-480262 | Msa0185900:CDS | 40.0% | |
| CAAGAACAGCATAAGTTGCA+TGG | - | chr2_1:480275-480294 | None:intergenic | 40.0% | |
| ACTTATGCTGTTCTTGTACC+TGG | + | chr2_1:480279-480298 | Msa0185900:CDS | 40.0% | |
| CGCCTCGTTTGATATAAGAA+AGG | + | chr2_1:480645-480664 | Msa0185900:intron | 40.0% | |
| ATTTGCGTTGCTCCAACTAA+AGG | + | chr2_1:480691-480710 | Msa0185900:intron | 40.0% | |
| ATATTGAAGCTGCCAAGCTA+GGG | + | chr2_1:480806-480825 | Msa0185900:CDS | 40.0% | |
| TATAAACTGAAGCCCTAGCT+TGG | - | chr2_1:480821-480840 | None:intergenic | 40.0% | |
| AATCTGTATTCGGGATTGAG+AGG | + | chr2_1:481298-481317 | Msa0185900:three_prime_UTR | 40.0% | |
| !! | TCATTGGTCTTGTGATAGAC+TGG | + | chr2_1:481359-481378 | Msa0185900:three_prime_UTR | 40.0% |
| !! | GCTGAAAAAGGTTTTAGCGG+TGG | - | chr2_1:475445-475464 | None:intergenic | 45.0% |
| GTGTTTGGAGACGCTGAAAA+AGG | - | chr2_1:475457-475476 | None:intergenic | 45.0% | |
| CGACAACTTGCAGTTACAGT+TGG | + | chr2_1:475698-475717 | Msa0185900:CDS | 45.0% | |
| GAAAGAGAGAAGGGAATCGT+TGG | + | chr2_1:475721-475740 | Msa0185900:CDS | 45.0% | |
| ! | AGAGAAGGGAATCGTTGGTT+CGG | + | chr2_1:475726-475745 | Msa0185900:CDS | 45.0% |
| TTGATTGTGAGGGAATGCTC+CGG | + | chr2_1:476671-476690 | Msa0185900:intron | 45.0% | |
| CGGTTTATGTTGATGTTCGG+AGG | + | chr2_1:476779-476798 | Msa0185900:intron | 45.0% | |
| TATGTTGATGTTCGGAGGAG+AGG | + | chr2_1:476784-476803 | Msa0185900:intron | 45.0% | |
| ! | ATTGTTTTCTTGTGGGGGAG+GGG | + | chr2_1:477119-477138 | Msa0185900:intron | 45.0% |
| AGACTAGTGCTAGCCAATGA+AGG | + | chr2_1:477205-477224 | Msa0185900:intron | 45.0% | |
| GCATGCAGGATTGTCCAATT+AGG | + | chr2_1:477416-477435 | Msa0185900:intron | 45.0% | |
| TTAACAGCAGACTCAACAGG+AGG | - | chr2_1:477703-477722 | None:intergenic | 45.0% | |
| GCTTTAACAGCAGACTCAAC+AGG | - | chr2_1:477706-477725 | None:intergenic | 45.0% | |
| GTTGAGTCTGCTGTTAAAGC+TGG | + | chr2_1:477706-477725 | Msa0185900:CDS | 45.0% | |
| TGCGTTTAGACCTGTTCATC+TGG | - | chr2_1:477772-477791 | None:intergenic | 45.0% | |
| GCAATAAGCAAAGGCAATGC+AGG | - | chr2_1:477962-477981 | None:intergenic | 45.0% | |
| CCAAGGTGAGCAATAAGCAA+AGG | - | chr2_1:477971-477990 | None:intergenic | 45.0% | |
| CCTTTGCTTATTGCTCACCT+TGG | + | chr2_1:477968-477987 | Msa0185900:CDS | 45.0% | |
| TTGCTTATTGCTCACCTTGG+GGG | + | chr2_1:477971-477990 | Msa0185900:CDS | 45.0% | |
| CTAAGGAAAGAATGGGATGG+AGG | + | chr2_1:478101-478120 | Msa0185900:intron | 45.0% | |
| CTGGTGAAGATGAAGAGTTG+AGG | + | chr2_1:478327-478346 | Msa0185900:CDS | 45.0% | |
| GGTAGCATCATTCTTGCAAG+AGG | - | chr2_1:478383-478402 | None:intergenic | 45.0% | |
| TAGGAAAGCCCAAACAGGTT+TGG | + | chr2_1:479089-479108 | Msa0185900:intron | 45.0% | |
| AAACCCAGCCAAACCTGTTT+GGG | - | chr2_1:479100-479119 | None:intergenic | 45.0% | |
| AAAACCCAGCCAAACCTGTT+TGG | - | chr2_1:479101-479120 | None:intergenic | 45.0% | |
| AGAGAGAGTGGGAGAAGATT+CGG | + | chr2_1:479195-479214 | Msa0185900:intron | 45.0% | |
| AGATTCGGAGTCTGGATAGT+TGG | + | chr2_1:479210-479229 | Msa0185900:intron | 45.0% | |
| GATTCGGAGTCTGGATAGTT+GGG | + | chr2_1:479211-479230 | Msa0185900:intron | 45.0% | |
| CACTGATATAGGGTTTAGGG+AGG | + | chr2_1:479322-479341 | Msa0185900:intron | 45.0% | |
| TAGAGCTGGATGTTGGATTG+TGG | + | chr2_1:479414-479433 | Msa0185900:intron | 45.0% | |
| ! | GAGAGCTATTAGGGCTCTAA+AGG | + | chr2_1:479541-479560 | Msa0185900:intron | 45.0% |
| AAGTGCTTCCATTCAGCGTT+TGG | + | chr2_1:479565-479584 | Msa0185900:intron | 45.0% | |
| AGTGCTTCCATTCAGCGTTT+GGG | + | chr2_1:479566-479585 | Msa0185900:intron | 45.0% | |
| ATTTCCACCCAAACGCTGAA+TGG | - | chr2_1:479576-479595 | None:intergenic | 45.0% | |
| CCATCCATATGCAAAATGGC+GGG | + | chr2_1:479600-479619 | Msa0185900:intron | 45.0% | |
| ATAATCAGGGTAGCCTTTCG+GGG | - | chr2_1:479923-479942 | None:intergenic | 45.0% | |
| ! | TAGCTGATTCATCATCCCTG+AGG | - | chr2_1:479970-479989 | None:intergenic | 45.0% |
| GTACCTGGACTTGAAGTTAC+AGG | + | chr2_1:480294-480313 | Msa0185900:intron | 45.0% | |
| TAGCCTGTAACTTCAAGTCC+AGG | - | chr2_1:480300-480319 | None:intergenic | 45.0% | |
| TGAACACAGGGTCTTGAAGA+AGG | + | chr2_1:480451-480470 | Msa0185900:intron | 45.0% | |
| AGCTATATTAGACAGCACCC+AGG | - | chr2_1:480551-480570 | None:intergenic | 45.0% | |
| GTGCTGTCTAATATAGCTGC+TGG | + | chr2_1:480553-480572 | Msa0185900:CDS | 45.0% | |
| CGAGATACCAAATCTGATCC+TGG | + | chr2_1:480717-480736 | Msa0185900:CDS | 45.0% | |
| AGATGCTCCAGGATCAGATT+TGG | - | chr2_1:480727-480746 | None:intergenic | 45.0% | |
| ! | AAATCTGATCCTGGAGCATC+TGG | + | chr2_1:480726-480745 | Msa0185900:CDS | 45.0% |
| GTTGAAAAAGGATGCTTGCC+AGG | + | chr2_1:480757-480776 | Msa0185900:intron | 45.0% | |
| GATATTGAAGCTGCCAAGCT+AGG | + | chr2_1:480805-480824 | Msa0185900:CDS | 45.0% | |
| AGGGCTTCAGTTTATAGAGC+TGG | + | chr2_1:480825-480844 | Msa0185900:CDS | 45.0% | |
| AGAAGATGGGATTGAAGCCA+TGG | + | chr2_1:481047-481066 | Msa0185900:CDS | 45.0% | |
| ATGGGCTTGATGAGTAGTAG+CGG | + | chr2_1:481148-481167 | Msa0185900:exon | 45.0% | |
| CTACATACGACATGGAGTTG+AGG | - | chr2_1:481225-481244 | None:intergenic | 45.0% | |
| !!! | TATATATTTTTTAATTGATA+GGG | + | chr2_1:477606-477625 | Msa0185900:intron | 5.0% |
| CATGAAAATGGGATCCACGG+CGG | - | chr2_1:475403-475422 | None:intergenic | 50.0% | |
| GGATCGGCCATTGAAGAAGA+AGG | - | chr2_1:475494-475513 | None:intergenic | 50.0% | |
| ! | GTCCCTTTTGTTGGCAGGAT+CGG | - | chr2_1:475510-475529 | None:intergenic | 50.0% |
| ! | ATAGGGTCCCTTTTGTTGGC+AGG | - | chr2_1:475515-475534 | None:intergenic | 50.0% |
| ! | GTTTTCAGTTGCGAATGCGG+CGG | + | chr2_1:475664-475683 | Msa0185900:intron | 50.0% |
| ! | TTTTCAGTTGCGAATGCGGC+GGG | + | chr2_1:475665-475684 | Msa0185900:intron | 50.0% |
| !! | GAGAAGGGAATCGTTGGTTC+GGG | + | chr2_1:475727-475746 | Msa0185900:CDS | 50.0% |
| !!! | TTGGATTGGCCCCTAGCTTT+TGG | - | chr2_1:476456-476475 | None:intergenic | 50.0% |
| AGCTAGGGGCCAATCCAAAT+TGG | + | chr2_1:476458-476477 | Msa0185900:intron | 50.0% | |
| AGATGCGGGGCTACTACATT+GGG | - | chr2_1:477156-477175 | None:intergenic | 50.0% | |
| ATCGTAAACAGGGGCAGATG+CGG | - | chr2_1:477171-477190 | None:intergenic | 50.0% | |
| TGCCCGACACATTACCAAAG+AGG | - | chr2_1:477503-477522 | None:intergenic | 50.0% | |
| GGTGCAGTGCAGAAAAGAGT+AGG | + | chr2_1:477634-477653 | Msa0185900:CDS | 50.0% | |
| AAGCAGCTTCAAGCAACTGC+AGG | - | chr2_1:477886-477905 | None:intergenic | 50.0% | |
| TGCAGTTGCTTGAAGCTGCT+TGG | + | chr2_1:477885-477904 | Msa0185900:intron | 50.0% | |
| TATTGCTGCAGGGAATCCAG+AGG | + | chr2_1:477919-477938 | Msa0185900:CDS | 50.0% | |
| AAAGTGATCACTCACCCCCA+AGG | - | chr2_1:477988-478007 | None:intergenic | 50.0% | |
| ! | GGAGCTCTTTTCTGCAGAAC+AGG | - | chr2_1:478264-478283 | None:intergenic | 50.0% |
| TGTTGCTGAGCAGTGTGCTT+GGG | + | chr2_1:478289-478308 | Msa0185900:CDS | 50.0% | |
| TGCTTGGGCACTAGGAAATG+TGG | + | chr2_1:478304-478323 | Msa0185900:CDS | 50.0% | |
| AACTGTTAGAACAGCGGCCT+GGG | + | chr2_1:478415-478434 | Msa0185900:CDS | 50.0% | |
| ! | CGAAAGCGTGAGTATTTCCC+CGG | + | chr2_1:478783-478802 | Msa0185900:intron | 50.0% |
| AAAGCCCAAACAGGTTTGGC+TGG | + | chr2_1:479093-479112 | Msa0185900:intron | 50.0% | |
| AAGCCCAAACAGGTTTGGCT+GGG | + | chr2_1:479094-479113 | Msa0185900:intron | 50.0% | |
| !!! | GGGATTTGTTTTGGTGGGAG+AGG | + | chr2_1:479231-479250 | Msa0185900:intron | 50.0% |
| TCCAAAGTTTGGCGGAGAGA+AGG | + | chr2_1:479457-479476 | Msa0185900:intron | 50.0% | |
| TTGGCGGAGAGAAGGCTTAT+TGG | + | chr2_1:479465-479484 | Msa0185900:intron | 50.0% | |
| !! | CCCGCCATTTTGCATATGGA+TGG | - | chr2_1:479603-479622 | None:intergenic | 50.0% |
| !! | ACGTCCCGCCATTTTGCATA+TGG | - | chr2_1:479607-479626 | None:intergenic | 50.0% |
| TACGTCACTCTTCACCAGCA+TGG | - | chr2_1:480047-480066 | None:intergenic | 50.0% | |
| AATTGTGGTTTCGTGTGCGG+TGG | - | chr2_1:480167-480186 | None:intergenic | 50.0% | |
| TTCTTATGCAGGAAGCAGCC+TGG | + | chr2_1:480530-480549 | Msa0185900:intron | 50.0% | |
| TCTTATGCAGGAAGCAGCCT+GGG | + | chr2_1:480531-480550 | Msa0185900:intron | 50.0% | |
| CAAACGAGGCGGCAGAAAAA+AGG | - | chr2_1:480636-480655 | None:intergenic | 50.0% | |
| GGTATCTCGTCGCCTTTAGT+TGG | - | chr2_1:480706-480725 | None:intergenic | 50.0% | |
| CAAGTGAAACCAGATGCTCC+AGG | - | chr2_1:480738-480757 | None:intergenic | 50.0% | |
| TTGTGTCTGTAGGTCCTGAG+AGG | + | chr2_1:480988-481007 | Msa0185900:intron | 50.0% | |
| TGTGTCTGTAGGTCCTGAGA+GGG | + | chr2_1:480989-481008 | Msa0185900:intron | 50.0% | |
| AGAGGGATGCCCAATGGAAA+GGG | + | chr2_1:481006-481025 | Msa0185900:CDS | 50.0% | |
| !! | AGCTTTGGGCCCTTTCCATT+GGG | - | chr2_1:481018-481037 | None:intergenic | 50.0% |
| !! | AAGCTTTGGGCCCTTTCCAT+TGG | - | chr2_1:481019-481038 | None:intergenic | 50.0% |
| ACGACATGGAGTTGAGGCAA+GGG | - | chr2_1:481219-481238 | None:intergenic | 50.0% | |
| TACGACATGGAGTTGAGGCA+AGG | - | chr2_1:481220-481239 | None:intergenic | 50.0% | |
| TGGCCGATCCTGCCAACAAA+AGG | + | chr2_1:475504-475523 | Msa0185900:CDS | 55.0% | |
| GGCCGATCCTGCCAACAAAA+GGG | + | chr2_1:475505-475524 | Msa0185900:CDS | 55.0% | |
| ATGCGGGGCTACTACATTGG+GGG | - | chr2_1:477154-477173 | None:intergenic | 55.0% | |
| GATGCGGGGCTACTACATTG+GGG | - | chr2_1:477155-477174 | None:intergenic | 55.0% | |
| CAGATGCGGGGCTACTACAT+TGG | - | chr2_1:477157-477176 | None:intergenic | 55.0% | |
| TCGTAAACAGGGGCAGATGC+GGG | - | chr2_1:477170-477189 | None:intergenic | 55.0% | |
| ACACTGCTCAGCAACAGGTG+AGG | - | chr2_1:478285-478304 | None:intergenic | 55.0% | |
| CAAGCACACTGCTCAGCAAC+AGG | - | chr2_1:478290-478309 | None:intergenic | 55.0% | |
| CTGTTGCTGAGCAGTGTGCT+TGG | + | chr2_1:478288-478307 | Msa0185900:CDS | 55.0% | |
| TGGGCACTAGGAAATGTGGC+TGG | + | chr2_1:478308-478327 | Msa0185900:CDS | 55.0% | |
| CAACTGTTAGAACAGCGGCC+TGG | + | chr2_1:478414-478433 | Msa0185900:CDS | 55.0% | |
| GTGGGAGAAGATTCGGAGTC+TGG | + | chr2_1:479202-479221 | Msa0185900:intron | 55.0% | |
| !! | GTTTTGGTGGGAGAGGTCTC+AGG | + | chr2_1:479238-479257 | Msa0185900:intron | 55.0% |
| CAGGCTCTCGAAATCCTGAG+AGG | + | chr2_1:479257-479276 | Msa0185900:intron | 55.0% | |
| GCCTTCTCTCCGCCAAACTT+TGG | - | chr2_1:479461-479480 | None:intergenic | 55.0% | |
| GCTTCCATTCAGCGTTTGGG+TGG | + | chr2_1:479569-479588 | Msa0185900:intron | 55.0% | |
| GTCACTCTTCACCAGCATGG+TGG | - | chr2_1:480044-480063 | None:intergenic | 55.0% | |
| TTCCATTGGGCATCCCTCTC+AGG | - | chr2_1:481005-481024 | None:intergenic | 55.0% | |
| GAGAGGGATGCCCAATGGAA+AGG | + | chr2_1:481005-481024 | Msa0185900:CDS | 55.0% | |
| CGTAAACAGGGGCAGATGCG+GGG | - | chr2_1:477169-477188 | None:intergenic | 60.0% | |
| GAGCAGTGTGCTTGGGCACT+AGG | + | chr2_1:478296-478315 | Msa0185900:CDS | 60.0% | |
| GTCCTGAGAGGGATGCCCAA+TGG | + | chr2_1:481000-481019 | Msa0185900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 475387 | 481413 | 475387 | ID=Msa0185900;Name=Msa0185900 |
| chr2_1 | mRNA | 475387 | 481413 | 475387 | ID=Msa0185900-mRNA-1;Parent=Msa0185900;Name=Msa0185900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=116|0.72|0.66|1|0.72|0.83|12|249|463 |
| chr2_1 | exon | 475387 | 475545 | 475387 | ID=Msa0185900-mRNA-1:exon:39;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 475672 | 475894 | 475672 | ID=Msa0185900-mRNA-1:exon:40;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 477627 | 477780 | 477627 | ID=Msa0185900-mRNA-1:exon:41;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 477890 | 477992 | 477890 | ID=Msa0185900-mRNA-1:exon:42;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 478273 | 478457 | 478273 | ID=Msa0185900-mRNA-1:exon:43;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 478710 | 478789 | 478710 | ID=Msa0185900-mRNA-1:exon:44;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 479973 | 480123 | 479973 | ID=Msa0185900-mRNA-1:exon:45;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 480234 | 480308 | 480234 | ID=Msa0185900-mRNA-1:exon:46;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 480541 | 480650 | 480541 | ID=Msa0185900-mRNA-1:exon:47;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 480713 | 480747 | 480713 | ID=Msa0185900-mRNA-1:exon:48;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 480779 | 480846 | 480779 | ID=Msa0185900-mRNA-1:exon:49;Parent=Msa0185900-mRNA-1 |
| chr2_1 | exon | 481000 | 481413 | 481000 | ID=Msa0185900-mRNA-1:exon:50;Parent=Msa0185900-mRNA-1 |
| chr2_1 | five_prime_UTR | 475387 | 475502 | 475387 | ID=Msa0185900-mRNA-1:five_prime_utr;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 475503 | 475545 | 475503 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 475672 | 475894 | 475672 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 477627 | 477780 | 477627 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 477890 | 477992 | 477890 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 478273 | 478457 | 478273 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 478710 | 478789 | 478710 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 479973 | 480123 | 479973 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 480234 | 480308 | 480234 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 480541 | 480650 | 480541 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 480713 | 480747 | 480713 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 480779 | 480846 | 480779 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | CDS | 481000 | 481164 | 481000 | ID=Msa0185900-mRNA-1:cds;Parent=Msa0185900-mRNA-1 |
| chr2_1 | three_prime_UTR | 481165 | 481413 | 481165 | ID=Msa0185900-mRNA-1:three_prime_utr;Parent=Msa0185900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
