AlfalfaGEDB | Msa0122080

M. sativa cultivar zhongmu-4 / Msa0122080

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122080	XP_013468354.1	83.250	597	45	5	1	542	1	597	0.0	954

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122080	sp\|F4KCE9\|KNL2_ARATH	43.103	116	63	3	18	131	11	125	5.90e-21	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122080	A0A072VLC9	83.250	597	45	5	1	542	1	597	0.0	954

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TFs/TRs:

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Gene ID	Type	Classification
Msa0122080	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0122080	Msa0122470	0.941652	2.864029e-101	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122080	MtrunA17_Chr1g0182621	83.250	597	45	5	1	542	1	597	0.0	954
Msa0122080	MtrunA17_Chr1g0182611	59.885	349	80	4	239	527	131	479	1.22e-121	366
Msa0122080	MtrunA17_Chr1g0182611	60.201	299	114	1	1	294	1	299	4.32e-115	349
Msa0122080	MtrunA17_Chr7g0231611	36.620	142	74	5	1	134	1	134	4.87e-15	76.6
Msa0122080	MtrunA17_Chr5g0416851	36.620	142	74	5	1	134	1	134	5.84e-15	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122080	AT5G02520.2	43.103	116	63	3	18	131	11	125	5.91e-22	100
Msa0122080	AT5G02520.2	45.205	73	39	1	471	542	519	591	7.59e-11	65.1
Msa0122080	AT5G02520.1	43.103	116	63	3	18	131	11	125	6.00e-22	100
Msa0122080	AT5G02520.1	45.205	73	39	1	471	542	518	590	7.91e-11	65.1
Msa0122080	AT5G02520.3	43.103	116	63	3	18	131	11	125	8.68e-22	99.8
Msa0122080	AT1G58210.1	39.130	92	52	1	24	115	64	151	3.53e-15	76.6

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Find 139 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGCACACTGGATAA+TGG	0.412705	1_3:-48424618	Msa0122080:CDS
AAAGTCCATTCCTACTTCTT+CGG	0.439348	1_3:-48424195	Msa0122080:CDS
AAAGTCTCAAAGAAGATGAG+TGG	0.624361	1_3:-48424116	Msa0122080:CDS
AAATTCTGTTCCTACGTCTT+TGG	0.304145	1_3:-48423755	Msa0122080:CDS
AACACCCGTTCAATCACAAA+AGG	0.455345	1_3:-48423049	Msa0122080:CDS
AACCACCGTTTAGCCATCTC+CGG	0.558688	1_3:-48425194	Msa0122080:CDS
AACTCGTACATGGAGGAGAT+TGG	0.450451	1_3:+48420661	None:intergenic
AACTCGTTCAAAGTATTCAC+TGG	0.532753	1_3:-48420924	Msa0122080:three_prime_UTR
AACTTCTGAATCTGGTGTTT+TGG	0.280867	1_3:-48421004	Msa0122080:three_prime_UTR
AAGCAGCATCCTACATCGAG+AGG	0.662773	1_3:-48424011	Msa0122080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTACTTGAGTTAATCGTAT+AGG	-	chr1_3:48421010-48421029	Msa0122080:exon	30.0%
CACATTTAATGTTGTGATTC+AGG	-	chr1_3:48421319-48421338	Msa0122080:intron	30.0%
ACACTTATGAATACAAACCT+GGG	+	chr1_3:48421484-48421503	None:intergenic	30.0%
GACGGTAAATATTTCGATAA+TGG	-	chr1_3:48421747-48421766	Msa0122080:intron	30.0%
GACTTTAATATTATGCAACC+TGG	+	chr1_3:48422019-48422038	None:intergenic	30.0%
CTTCCAGAAATATCATTTGA+TGG	-	chr1_3:48422177-48422196	Msa0122080:intron	30.0%
TACTAAGATATAGAGACTGT+AGG	+	chr1_3:48422268-48422287	None:intergenic	30.0%
ACATATCTTGTTCATCTTCA+AGG	+	chr1_3:48422364-48422383	None:intergenic	30.0%
TATGTCAATTAAGATGAGTG+AGG	-	chr1_3:48422379-48422398	Msa0122080:CDS	30.0%
AGATTCGTTGATACATTATC+AGG	+	chr1_3:48422572-48422591	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	48420629	48425461	48420629	ID=Msa0122080;Name=Msa0122080
chr1_3	mRNA	48420629	48425461	48420629	ID=Msa0122080-mRNA-1;Parent=Msa0122080;Name=Msa0122080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=125\|0.66\|0.46\|1\|0.58\|0.38\|13\|397\|542
chr1_3	exon	48420629	48421029	48420629	ID=Msa0122080-mRNA-1:exon:14633;Parent=Msa0122080-mRNA-1
chr1_3	exon	48422334	48422407	48422334	ID=Msa0122080-mRNA-1:exon:14632;Parent=Msa0122080-mRNA-1
chr1_3	exon	48422490	48422548	48422490	ID=Msa0122080-mRNA-1:exon:14631;Parent=Msa0122080-mRNA-1
chr1_3	exon	48422782	48423022	48422782	ID=Msa0122080-mRNA-1:exon:14630;Parent=Msa0122080-mRNA-1
chr1_3	exon	48423044	48423175	48423044	ID=Msa0122080-mRNA-1:exon:14629;Parent=Msa0122080-mRNA-1
chr1_3	exon	48423191	48423354	48423191	ID=Msa0122080-mRNA-1:exon:14628;Parent=Msa0122080-mRNA-1
chr1_3	exon	48423479	48423554	48423479	ID=Msa0122080-mRNA-1:exon:14627;Parent=Msa0122080-mRNA-1
chr1_3	exon	48423681	48423784	48423681	ID=Msa0122080-mRNA-1:exon:14626;Parent=Msa0122080-mRNA-1
chr1_3	exon	48423892	48424045	48423892	ID=Msa0122080-mRNA-1:exon:14625;Parent=Msa0122080-mRNA-1
chr1_3	exon	48424055	48424224	48424055	ID=Msa0122080-mRNA-1:exon:14624;Parent=Msa0122080-mRNA-1
chr1_3	exon	48424340	48424487	48424340	ID=Msa0122080-mRNA-1:exon:14623;Parent=Msa0122080-mRNA-1
chr1_3	exon	48424605	48424749	48424605	ID=Msa0122080-mRNA-1:exon:14622;Parent=Msa0122080-mRNA-1
chr1_3	exon	48425179	48425461	48425179	ID=Msa0122080-mRNA-1:exon:14621;Parent=Msa0122080-mRNA-1
chr1_3	five_prime_UTR	48425337	48425461	48425337	ID=Msa0122080-mRNA-1:five_prime_utr;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48425179	48425336	48425179	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48424605	48424749	48424605	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48424340	48424487	48424340	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48424055	48424224	48424055	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48423892	48424045	48423892	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48423681	48423784	48423681	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48423479	48423554	48423479	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48423191	48423354	48423191	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48423044	48423175	48423044	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48422782	48423022	48422782	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48422490	48422548	48422490	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48422334	48422407	48422334	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	CDS	48421026	48421029	48421026	ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3	three_prime_UTR	48420629	48421025	48420629	ID=Msa0122080-mRNA-1:three_prime_utr;Parent=Msa0122080-mRNA-1

Gene Sequence

>Msa0122080

ATGGCTGATTTCACTCCCAGTTCTTCTAATTGCACCCCCACACCTTCTTCTTCTTCTTCTTGCTTCCAACGAACGGTTACATTATACGATTGGTGGCTCGTTAAATCATCTCAAGGAAACAACCACCGTTTAGCCATCTCCGGCGTCTCTTCCACAAAGGAAGAAGCGCTTCGGGTGTTTAATTCCGCTCCTATTATCAAAAGATATGATGAGGTTTCCCTTGAGACTGTCGATGGTATATATGTTTTGATTAGGGGTTTCATTAATAAACAGTGCACACTGGATAATGGTTTTACTCCCCAGATTTTCAAGAGTTTTTTATTTGGCTTTTCTGAAAACTGGGAAAGCTCTTTTCTAGCGTGCGTTAGAGAACAACCAGAAACCGGTACTGATTCGGGCAATGCTGTTTTGGATAATGAATTTGCATTTTATCAAGGAACTTTCTCTGACGGTGAGGAAAAGTCCATTCCTACTTCTTCGGTATTGCCTGAAGAGGCCCCAGAGAATTGCAAGACTCCATTCCCCGGAGATGAATGCAAAGTCTCAAAGAAGATGAGTGGGGTTGATATTGCTTGTGGTAGTGGTAAAAATAGACGTAGTACCAGGTTGCATAATATTAAACAAAAGAAGCCGAAGCAGCATCCTACATCGAGAGGTCCTCTCAAGCGTTCAGATGAAGAGCCAAGCTCTACCTCAAAGGCCGTCGAAAATCATGATCCGGATACTGTTGTTCCTGATAATGTACCAGCAAATCTTCCAGAAATATCATTTGATGCTTTGGAAAATTCTGTTCCTACGTCTTTGGTCACGAGAGATTGCAATATGTCGTTCCTTGAAGATGAACAAGATATGTCAATTAAGATGAGTGAGGTCAACGATGTTGTGGAAAATCATGATTTGGATACTGCTGTTCCTGATAATGTATCAACGAATCTTCCAGAAATATTATCTGATGCTGTGGAGAAGTCTTTTCCTACTTCTTTGTTATCACCGGATAAGACCATGGGAGATCGCAATAAGGCACTCCTCAAAGATGAACGGGATATGTCAATTAAGACGGGTAGGGTCAATGTTGTTCATGGTAGTGGCGGGAATAGACGTAGTGCCCGGATGCATAATAAGAAGCAACCTGCTACTGGAGATCCTGCAACACATCCAGATAAAGACCAGATCTCTGCCTCAGCAGCCTTGGAAATGACTGATGGAGGACTGGAAAGTCTATCAACACCCGTTCAATCACAAAAGGGAAGAGTCACTAATAAATTGAGTTCCAGAATTTCCAAAACCTTTTCAGCAAAAACCAAAAGATGTTATAAGAAAAAAAGGGCGACAATTGAAACAGAAGCGGTCACACCTAAGAGAAAAATTATTAAACCTGCATCTTCTGTAAAATCTCCTCAAGGAAGGAATGTAAGTCACTCAAACAAGGGAAGTCAACAGAGATTATCCACAGTTTCTCCAGAGTCATTGAGTCTAAAAAAATCCAGATCTGGAAGGTGGCTTCTACCTCCCTTAGAGTTTTGGCGCAATCAACAACCTATTTATAACATGGACCGTGAGATTACAGAAATTCAGGAAGGTTCATCTTTGATATCACCTTTTAGAGGCTCTTCATCATTGGGCAGGTGA

Protein sequence

>Msa0122080

MADFTPSSSNCTPTPSSSSSCFQRTVTLYDWWLVKSSQGNNHRLAISGVSSTKEEALRVFNSAPIIKRYDEVSLETVDGIYVLIRGFINKQCTLDNGFTPQIFKSFLFGFSENWESSFLACVREQPETGTDSGNAVLDNEFAFYQGTFSDGEEKSIPTSSVLPEEAPENCKTPFPGDECKVSKKMSGVDIACGSGKNRRSTRLHNIKQKKPKQHPTSRGPLKRSDEEPSSTSKAVENHDPDTVVPDNVPANLPEISFDALENSVPTSLVTRDCNMSFLEDEQDMSIKMSEVNDVVENHDLDTAVPDNVSTNLPEILSDAVEKSFPTSLLSPDKTMGDRNKALLKDERDMSIKTGRVNVVHGSGGNRRSARMHNKKQPATGDPATHPDKDQISASAALEMTDGGLESLSTPVQSQKGRVTNKLSSRISKTFSAKTKRCYKKKRATIETEAVTPKRKIIKPASSVKSPQGRNVSHSNKGSQQRLSTVSPESLSLKKSRSGRWLLPPLEFWRNQQPIYNMDREITEIQEGSSLISPFRGSSSLGR*