Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122080 | XP_013468354.1 | 83.250 | 597 | 45 | 5 | 1 | 542 | 1 | 597 | 0.0 | 954 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122080 | sp|F4KCE9|KNL2_ARATH | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 5.90e-21 | 100 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122080 | A0A072VLC9 | 83.250 | 597 | 45 | 5 | 1 | 542 | 1 | 597 | 0.0 | 954 |
Gene ID | Type | Classification |
---|---|---|
Msa0122080 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0122080 | Msa0122470 | 0.941652 | 2.864029e-101 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122080 | MtrunA17_Chr1g0182621 | 83.250 | 597 | 45 | 5 | 1 | 542 | 1 | 597 | 0.0 | 954 |
Msa0122080 | MtrunA17_Chr1g0182611 | 59.885 | 349 | 80 | 4 | 239 | 527 | 131 | 479 | 1.22e-121 | 366 |
Msa0122080 | MtrunA17_Chr1g0182611 | 60.201 | 299 | 114 | 1 | 1 | 294 | 1 | 299 | 4.32e-115 | 349 |
Msa0122080 | MtrunA17_Chr7g0231611 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 4.87e-15 | 76.6 |
Msa0122080 | MtrunA17_Chr5g0416851 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 5.84e-15 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122080 | AT5G02520.2 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 5.91e-22 | 100 |
Msa0122080 | AT5G02520.2 | 45.205 | 73 | 39 | 1 | 471 | 542 | 519 | 591 | 7.59e-11 | 65.1 |
Msa0122080 | AT5G02520.1 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 6.00e-22 | 100 |
Msa0122080 | AT5G02520.1 | 45.205 | 73 | 39 | 1 | 471 | 542 | 518 | 590 | 7.91e-11 | 65.1 |
Msa0122080 | AT5G02520.3 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 8.68e-22 | 99.8 |
Msa0122080 | AT1G58210.1 | 39.130 | 92 | 52 | 1 | 24 | 115 | 64 | 151 | 3.53e-15 | 76.6 |
Find 139 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCGAATCAGTACCGGTTTC+TGG | 0.134199 | 1_3:+48424393 | None:intergenic |
TTACCATCAGATAATATTTC+TGG | 0.175942 | 1_3:+48423475 | None:intergenic |
TTACCATCAAATGATATTTC+TGG | 0.188236 | 1_3:+48423888 | None:intergenic |
AATGGAGTCTTGCAATTCTC+TGG | 0.210078 | 1_3:+48424155 | None:intergenic |
CAATTCTCTGGGGCCTCTTC+AGG | 0.246287 | 1_3:+48424167 | None:intergenic |
TTCTACCTCCCTTAGAGTTT+TGG | 0.256165 | 1_3:-48422517 | Msa0122080:CDS |
GAAGAAATCAAAACAGCTTT+TGG | 0.263060 | 1_3:-48420881 | Msa0122080:three_prime_UTR |
TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1_3:+48423129 | None:intergenic |
AGATTTGCTGGTACATTATC+AGG | 0.278683 | 1_3:+48423912 | None:intergenic |
AACTTCTGAATCTGGTGTTT+TGG | 0.280867 | 1_3:-48421004 | Msa0122080:three_prime_UTR |
ATTGGAAAATTTACCAGATC+TGG | 0.281653 | 1_3:+48422768 | None:intergenic |
TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1_3:-48424379 | Msa0122080:CDS |
GATATTTCTGGAAGATTTGC+TGG | 0.294734 | 1_3:+48423900 | None:intergenic |
AAATTCTGTTCCTACGTCTT+TGG | 0.304145 | 1_3:-48423755 | Msa0122080:CDS |
ATCTCAATGGCCCGTTTATA+AGG | 0.306063 | 1_3:-48420783 | Msa0122080:three_prime_UTR |
ATTAGGTGAACTTCTGAATC+TGG | 0.306686 | 1_3:-48421012 | Msa0122080:intron |
TCACATACCATGTTATAAAT+AGG | 0.311211 | 1_3:+48422482 | None:intergenic |
AGTATTCACTGGTCAACTTT+TGG | 0.327826 | 1_3:-48420913 | Msa0122080:three_prime_UTR |
ACATATCTTGTTCATCTTCA+AGG | 0.335841 | 1_3:+48423707 | None:intergenic |
CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1_3:-48422383 | Msa0122080:CDS |
TTGATTGCGCCAAAACTCTA+AGG | 0.343897 | 1_3:+48422508 | None:intergenic |
AGATTCGTTGATACATTATC+AGG | 0.360747 | 1_3:+48423499 | None:intergenic |
CTTCCAGAAATATCATTTGA+TGG | 0.363684 | 1_3:-48423891 | Msa0122080:intron |
GCAGAGATCTGGTCTTTATC+TGG | 0.371673 | 1_3:+48423117 | None:intergenic |
TGAGACTTTGCATTCATCTC+CGG | 0.373003 | 1_3:+48424130 | None:intergenic |
ATAGCTGTAAACCTTATAAA+CGG | 0.376898 | 1_3:+48420772 | None:intergenic |
GGTTGTGGAAAATCATGATT+TGG | 0.381883 | 1_3:-48423533 | Msa0122080:CDS |
CCAGAAACCGGTACTGATTC+GGG | 0.383266 | 1_3:-48424393 | Msa0122080:CDS |
AATGATGAAGAGCCTCTAAA+AGG | 0.383621 | 1_3:+48422340 | None:intergenic |
ACCAGAAACCGGTACTGATT+CGG | 0.393560 | 1_3:-48424394 | Msa0122080:CDS |
ACATATCCCGTTCATCTTTG+AGG | 0.399307 | 1_3:+48423262 | None:intergenic |
AAACAGTGCACACTGGATAA+TGG | 0.412705 | 1_3:-48424618 | Msa0122080:CDS |
GTTGATATTGCTTGTGGTAG+TGG | 0.415196 | 1_3:-48424092 | Msa0122080:CDS |
AGGATTTAACATTATGCATC+CGG | 0.417454 | 1_3:+48423181 | None:intergenic |
ATGGAGTCTTGCAATTCTCT+GGG | 0.433444 | 1_3:+48424156 | None:intergenic |
TCCTACTTCTTTGTTATCAC+CGG | 0.437184 | 1_3:-48423316 | Msa0122080:CDS |
ATTCAGGGAAGAAGCGCTTC+GGG | 0.439330 | 1_3:-48424733 | Msa0122080:intron |
AAAGTCCATTCCTACTTCTT+CGG | 0.439348 | 1_3:-48424195 | Msa0122080:CDS |
TTTAGAGGCTCTTCATCATT+GGG | 0.442092 | 1_3:-48422337 | Msa0122080:CDS |
GATCTCTGCCTCAGCAGCCT+TGG | 0.442994 | 1_3:-48423103 | Msa0122080:CDS |
GACCATGGGAGATCGCAATA+AGG | 0.444355 | 1_3:-48423289 | Msa0122080:CDS |
GATTCAGGGAAGAAGCGCTT+CGG | 0.444377 | 1_3:-48424734 | Msa0122080:intron |
CAGAAGAAGCAACCTGCTAC+TGG | 0.444849 | 1_3:-48423156 | Msa0122080:CDS |
GGCACTCCTCAAAGATGAAC+GGG | 0.449784 | 1_3:-48423268 | Msa0122080:CDS |
AACTCGTACATGGAGGAGAT+TGG | 0.450451 | 1_3:+48420661 | None:intergenic |
AACACCCGTTCAATCACAAA+AGG | 0.455345 | 1_3:-48423049 | Msa0122080:CDS |
GTCAATGTTGTTCATGGTAG+TGG | 0.459300 | 1_3:-48423222 | Msa0122080:CDS |
GAGACTTTGCATTCATCTCC+GGG | 0.467675 | 1_3:+48424131 | None:intergenic |
CGATCTCCCATGGTCTTATC+CGG | 0.467896 | 1_3:+48423297 | None:intergenic |
GGTAGGGTCAATGTTGTTCA+TGG | 0.469284 | 1_3:-48423228 | Msa0122080:CDS |
TTGCATTCATCTCCGGGGAA+TGG | 0.473283 | 1_3:+48424137 | None:intergenic |
TAGCTGTAAACCTTATAAAC+GGG | 0.474870 | 1_3:+48420773 | None:intergenic |
ACGGCCTTTGAGGTAGAGCT+TGG | 0.476441 | 1_3:+48423963 | None:intergenic |
GAACGGTTACATTATACGAT+TGG | 0.482529 | 1_3:-48425244 | Msa0122080:CDS |
CTCGATGTAGGATGCTGCTT+CGG | 0.487404 | 1_3:+48424014 | None:intergenic |
AGGCTGCTGAGGCAGAGATC+TGG | 0.487795 | 1_3:+48423106 | None:intergenic |
GTGTGAATGAATGCGATGTT+TGG | 0.488330 | 1_3:+48425338 | None:intergenic |
TTATCAGGAACAACAGTATC+CGG | 0.501961 | 1_3:+48423927 | None:intergenic |
TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1_3:-48425261 | Msa0122080:CDS |
GGCCGTCGAAAATCATGATC+CGG | 0.505332 | 1_3:-48423946 | Msa0122080:CDS |
ACTTACATAACACAACAATT+CGG | 0.521806 | 1_3:-48420962 | Msa0122080:three_prime_UTR |
GAGGCTCTTCATCATTGGGC+AGG | 0.522623 | 1_3:-48422333 | Msa0122080:intron |
TGCCTTATTGCGATCTCCCA+TGG | 0.525598 | 1_3:+48423287 | None:intergenic |
CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1_3:+48425249 | None:intergenic |
AACTCGTTCAAAGTATTCAC+TGG | 0.532753 | 1_3:-48420924 | Msa0122080:three_prime_UTR |
AGCATTGCCCGAATCAGTAC+CGG | 0.533197 | 1_3:+48424386 | None:intergenic |
GTTAGAGAACAACCAGAAAC+CGG | 0.534072 | 1_3:-48424405 | Msa0122080:CDS |
CTAATACATCAACTCGTACA+TGG | 0.534739 | 1_3:+48420651 | None:intergenic |
CGGTTACATTATACGATTGG+TGG | 0.540059 | 1_3:-48425241 | Msa0122080:CDS |
GGAAATGACTGATGGAGGAC+TGG | 0.545081 | 1_3:-48423082 | Msa0122080:CDS |
GACTTTAATATTATGCAACC+TGG | 0.548218 | 1_3:+48424052 | None:intergenic |
TATCAAGGAACTTTCTCTGA+CGG | 0.548904 | 1_3:-48424339 | Msa0122080:intron |
AGACGCCGGAGATGGCTAAA+CGG | 0.549320 | 1_3:+48425189 | None:intergenic |
TCAGGCAATACCGAAGAAGT+AGG | 0.549862 | 1_3:+48424185 | None:intergenic |
GTTGAAGAGAAATAAGTCAG+AGG | 0.551672 | 1_3:+48425360 | None:intergenic |
CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1_3:+48422383 | None:intergenic |
TCAAATTAAGAGGATCTCAA+TGG | 0.553847 | 1_3:-48420796 | Msa0122080:three_prime_UTR |
AAGTCTCAAAGAAGATGAGT+GGG | 0.555389 | 1_3:-48424115 | Msa0122080:CDS |
AACCACCGTTTAGCCATCTC+CGG | 0.558688 | 1_3:-48425194 | Msa0122080:CDS |
GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1_3:+48423144 | None:intergenic |
GCAGCCTTGGAAATGACTGA+TGG | 0.560856 | 1_3:-48423090 | Msa0122080:CDS |
TGTGGAAGAGACGCCGGAGA+TGG | 0.563212 | 1_3:+48425181 | None:intergenic |
GCGGGAATAGACGTAGTGCC+CGG | 0.565247 | 1_3:-48423200 | Msa0122080:CDS |
TCCGGTGATAACAAAGAAGT+AGG | 0.566020 | 1_3:+48423315 | None:intergenic |
TTGAGAGGACCTCTCGATGT+AGG | 0.566402 | 1_3:+48424002 | None:intergenic |
CGGGATATGTCAATTAAGAC+GGG | 0.568225 | 1_3:-48423249 | Msa0122080:CDS |
ACGGGATATGTCAATTAAGA+CGG | 0.571346 | 1_3:-48423250 | Msa0122080:CDS |
AGAAGAAGAAGAAGGTGTGG+GGG | 0.572575 | 1_3:+48425280 | None:intergenic |
ATATGTCAATTAAGACGGGT+AGG | 0.573298 | 1_3:-48423245 | Msa0122080:CDS |
AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1_3:-48424149 | Msa0122080:CDS |
CTGTAAAATCTCCTCAAGGA+AGG | 0.576048 | 1_3:-48422867 | Msa0122080:CDS |
TCTTCATCTGAACGCTTGAG+AGG | 0.576282 | 1_3:+48423987 | None:intergenic |
AGTGGGGTTGATATTGCTTG+TGG | 0.577027 | 1_3:-48424098 | Msa0122080:CDS |
TTCTTCGGTATTGCCTGAAG+AGG | 0.578425 | 1_3:-48424180 | Msa0122080:CDS |
GAATGTAAGTCACTCAAACA+AGG | 0.580926 | 1_3:-48422845 | Msa0122080:CDS |
TGACTTACATTCCTTCCTTG+AGG | 0.581463 | 1_3:+48422856 | None:intergenic |
AATGTCTTGATCAAATTAAG+AGG | 0.585332 | 1_3:-48420806 | Msa0122080:three_prime_UTR |
GGATTTAACATTATGCATCC+GGG | 0.586374 | 1_3:+48423182 | None:intergenic |
ATGTTGTTCATGGTAGTGGC+GGG | 0.588592 | 1_3:-48423218 | Msa0122080:CDS |
AGTCATTTCCAAGGCTGCTG+AGG | 0.594162 | 1_3:+48423095 | None:intergenic |
CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1_3:-48423478 | Msa0122080:intron |
CATTAATAAACAGTGCACAC+TGG | 0.598333 | 1_3:-48424625 | Msa0122080:CDS |
ACACCCGTTCAATCACAAAA+GGG | 0.599424 | 1_3:-48423048 | Msa0122080:CDS |
AGAGAAATAAGTCAGAGGAG+AGG | 0.599649 | 1_3:+48425365 | None:intergenic |
CAATACCGAAGAAGTAGGAA+TGG | 0.601021 | 1_3:+48424190 | None:intergenic |
TCCTCCATCAGTCATTTCCA+AGG | 0.602323 | 1_3:+48423086 | None:intergenic |
AGGCACTCCTCAAAGATGAA+CGG | 0.602783 | 1_3:-48423269 | Msa0122080:CDS |
AATGTTGTTCATGGTAGTGG+CGG | 0.603017 | 1_3:-48423219 | Msa0122080:CDS |
TGATTGCGCCAAAACTCTAA+GGG | 0.604798 | 1_3:+48422509 | None:intergenic |
GTTATCACCGGATAAGACCA+TGG | 0.605592 | 1_3:-48423304 | Msa0122080:CDS |
AATGTAAGTCACTCAAACAA+GGG | 0.606573 | 1_3:-48422844 | Msa0122080:CDS |
GCCTTGGAAATGACTGATGG+AGG | 0.606817 | 1_3:-48423087 | Msa0122080:CDS |
GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1_3:-48424672 | Msa0122080:CDS |
ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1_3:+48424667 | None:intergenic |
AGAGCCAAGCTCTACCTCAA+AGG | 0.621891 | 1_3:-48423967 | Msa0122080:CDS |
AAAGTCTCAAAGAAGATGAG+TGG | 0.624361 | 1_3:-48424116 | Msa0122080:CDS |
TATGTCAATTAAGACGGGTA+GGG | 0.624553 | 1_3:-48423244 | Msa0122080:CDS |
TTATCACCGGATAAGACCAT+GGG | 0.624895 | 1_3:-48423303 | Msa0122080:CDS |
TTACTTTGTGGAAGAGACGC+CGG | 0.624985 | 1_3:+48425175 | None:intergenic |
TATTATCAAAAGATATGATG+AGG | 0.626070 | 1_3:-48424694 | Msa0122080:CDS |
TCTTCTGTAAAATCTCCTCA+AGG | 0.626237 | 1_3:-48422871 | Msa0122080:CDS |
TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1_3:+48424668 | None:intergenic |
CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1_3:+48422804 | None:intergenic |
TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1_3:-48425221 | Msa0122080:CDS |
TCAACAACCTATTTATAACA+TGG | 0.640146 | 1_3:-48422489 | Msa0122080:intron |
GAGATTACAGAAATTCAGGA+AGG | 0.641599 | 1_3:-48422379 | Msa0122080:CDS |
GGCGACAATTGAAACAGAAG+CGG | 0.644820 | 1_3:-48422926 | Msa0122080:CDS |
TGGAGTCTTGCAATTCTCTG+GGG | 0.655923 | 1_3:+48424157 | None:intergenic |
CATCGCATTCATTCACACAA+TGG | 0.658461 | 1_3:-48425333 | Msa0122080:exon |
ACTTCACTTACATGTACATG+TGG | 0.661658 | 1_3:-48420829 | Msa0122080:three_prime_UTR |
AAGCAGCATCCTACATCGAG+AGG | 0.662773 | 1_3:-48424011 | Msa0122080:CDS |
TATGTCAATTAAGATGAGTG+AGG | 0.667369 | 1_3:-48423689 | Msa0122080:CDS |
CGCCGGAGATGGCTAAACGG+TGG | 0.689679 | 1_3:+48425192 | None:intergenic |
AGACTTTGCATTCATCTCCG+GGG | 0.700085 | 1_3:+48424132 | None:intergenic |
TTGCGCCAAAACTCTAAGGG+AGG | 0.703796 | 1_3:+48422512 | None:intergenic |
GGGGTGCAATTAGAAGAACT+GGG | 0.727442 | 1_3:+48425299 | None:intergenic |
AGTCTCAAAGAAGATGAGTG+GGG | 0.750570 | 1_3:-48424114 | Msa0122080:CDS |
TCTCTCGTGACCAAAGACGT+AGG | 0.753414 | 1_3:+48423745 | None:intergenic |
ATACATCAACTCGTACATGG+AGG | 0.753862 | 1_3:+48420654 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGTAAAAAAAAAATCTAA+AGG | + | chr1_3:48423972-48423991 | None:intergenic | 10.0% |
!! | TGGAAAAATAAATAAATTAA+GGG | + | chr1_3:48424740-48424759 | None:intergenic | 10.0% |
!! | TTGGAAAAATAAATAAATTA+AGG | + | chr1_3:48424741-48424760 | None:intergenic | 10.0% |
!!! | ATAGTTTTTGTTAATTTCAT+CGG | - | chr1_3:48421098-48421117 | Msa0122080:intron | 15.0% |
!!! | ATTTTCAAGAGTTTTTTATT+TGG | - | chr1_3:48421603-48421622 | Msa0122080:intron | 15.0% |
!!! | TTTTTTCTTATAACATCTTT+TGG | + | chr1_3:48423120-48423139 | None:intergenic | 15.0% |
!! | AAAGATGTTATAAGAAAAAA+AGG | - | chr1_3:48423120-48423139 | Msa0122080:CDS | 15.0% |
!! | AAGATGTTATAAGAAAAAAA+GGG | - | chr1_3:48423121-48423140 | Msa0122080:CDS | 15.0% |
!! | TGTAAAAAAAAAACAATGAT+TGG | + | chr1_3:48423321-48423340 | None:intergenic | 15.0% |
!!! | TTTCTTTATGTTATTTTTGA+AGG | - | chr1_3:48423934-48423953 | Msa0122080:CDS | 15.0% |
!!! | AATAGATGATCTTATAATTT+TGG | - | chr1_3:48424105-48424124 | Msa0122080:CDS | 15.0% |
!!! | TTTTTTTTTCTTAGATGAAG+TGG | - | chr1_3:48420642-48420661 | Msa0122080:three_prime_UTR | 20.0% |
!!! | TTTTTTTTCTTAGATGAAGT+GGG | - | chr1_3:48420643-48420662 | Msa0122080:three_prime_UTR | 20.0% |
!! | GTTAACACTAAACTATAAAT+TGG | - | chr1_3:48421159-48421178 | Msa0122080:intron | 20.0% |
!! | AAATATAAAAACAGTTACTG+TGG | - | chr1_3:48421270-48421289 | Msa0122080:intron | 20.0% |
!!! | TCATCATATCTTTTGATAAT+AGG | + | chr1_3:48421375-48421394 | None:intergenic | 20.0% |
!! | TATTATCAAAAGATATGATG+AGG | - | chr1_3:48421374-48421393 | Msa0122080:intron | 20.0% |
!!! | ATGGTATATATGTTTTGATT+AGG | - | chr1_3:48421415-48421434 | Msa0122080:intron | 20.0% |
!!! | TGGTATATATGTTTTGATTA+GGG | - | chr1_3:48421416-48421435 | Msa0122080:intron | 20.0% |
!! | AAAAAAACAAAAATCCATCA+GGG | + | chr1_3:48421565-48421584 | None:intergenic | 20.0% |
!!! | TGTTTTTTTCTTCTATTTCA+TGG | - | chr1_3:48421576-48421595 | Msa0122080:intron | 20.0% |
!!! | AATGAATTTGCATTTTATCA+AGG | - | chr1_3:48421714-48421733 | Msa0122080:intron | 20.0% |
!!! | GTTTTATTAATTTTTGTAGC+AGG | - | chr1_3:48421844-48421863 | Msa0122080:intron | 20.0% |
!! | TATTAAGATATAGAAACTGT+AGG | + | chr1_3:48422698-48422717 | None:intergenic | 20.0% |
!!! | GGTTTAATAATTTTTCTCTT+AGG | + | chr1_3:48423173-48423192 | None:intergenic | 20.0% |
!! | GAGTGTATATATTATCAATT+AGG | + | chr1_3:48423389-48423408 | None:intergenic | 20.0% |
!! | TTTACTCTATTCTTTATGTT+TGG | - | chr1_3:48423507-48423526 | Msa0122080:CDS | 20.0% |
!! | TTACTCTATTCTTTATGTTT+GGG | - | chr1_3:48423508-48423527 | Msa0122080:CDS | 20.0% |
!!! | GAGAATTTTTTAAGTTAGTT+GGG | + | chr1_3:48423855-48423874 | None:intergenic | 20.0% |
!!! | TGAGAATTTTTTAAGTTAGT+TGG | + | chr1_3:48423856-48423875 | None:intergenic | 20.0% |
!! | AAAAAAAAATCTAAAGGAAC+TGG | + | chr1_3:48423966-48423985 | None:intergenic | 20.0% |
!! | CTATTCCAAAGATTAAATAA+TGG | + | chr1_3:48424090-48424109 | None:intergenic | 20.0% |
!!! | TATAATTTTGGAATGATACT+TGG | - | chr1_3:48424117-48424136 | Msa0122080:CDS | 20.0% |
!!! | CAGATTAGATAAATGTATTT+TGG | - | chr1_3:48424535-48424554 | Msa0122080:intron | 20.0% |
!! | GACAGAAAAATAAATCAAAT+TGG | + | chr1_3:48424894-48424913 | None:intergenic | 20.0% |
!!! | ATGATTCGTTGTTTTTTATT+AGG | - | chr1_3:48425039-48425058 | Msa0122080:intron | 20.0% |
! | TTCTGATTCAACAAGATTAT+TGG | + | chr1_3:48420984-48421003 | None:intergenic | 25.0% |
! | AATCTTGTTGAATCAGAAAT+TGG | - | chr1_3:48420986-48421005 | Msa0122080:three_prime_UTR | 25.0% |
!!! | ACTATTAAGTATTGAAAGTC+AGG | + | chr1_3:48421083-48421102 | None:intergenic | 25.0% |
!!! | ATCGGTTTTGAATTTATGTT+TGG | - | chr1_3:48421116-48421135 | Msa0122080:intron | 25.0% |
! | ACATTTAATGTTGTGATTCA+GGG | - | chr1_3:48421320-48421339 | Msa0122080:intron | 25.0% |
!!! | ATATCTTTTGATAATAGGAG+CGG | + | chr1_3:48421370-48421389 | None:intergenic | 25.0% |
!!! | GGTATATATGTTTTGATTAG+GGG | - | chr1_3:48421417-48421436 | Msa0122080:intron | 25.0% |
!! | TTCATAAGTGTCAATGTTTT+TGG | - | chr1_3:48421493-48421512 | Msa0122080:intron | 25.0% |
!! | TTGCAAGATATTGTTGATAA+TGG | - | chr1_3:48421525-48421544 | Msa0122080:intron | 25.0% |
! | AAAAAACAAAAATCCATCAG+GGG | + | chr1_3:48421564-48421583 | None:intergenic | 25.0% |
! | GAAAAAAACAAAAATCCATC+AGG | + | chr1_3:48421566-48421585 | None:intergenic | 25.0% |
! | TTACCATCAAATGATATTTC+TGG | + | chr1_3:48422183-48422202 | None:intergenic | 25.0% |
! | TTACCATCAGATAATATTTC+TGG | + | chr1_3:48422596-48422615 | None:intergenic | 25.0% |
! | CTTCATGAATAAACAATGAT+TGG | + | chr1_3:48423351-48423370 | None:intergenic | 25.0% |
! | AAAAATGCTAACAATAGCAT+TGG | + | chr1_3:48423459-48423478 | None:intergenic | 25.0% |
!! | ATTGTTAGCATTTTTGTACA+TGG | - | chr1_3:48423464-48423483 | Msa0122080:intron | 25.0% |
!!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1_3:48423520-48423539 | Msa0122080:CDS | 25.0% |
! | TCAACAACCTATTTATAACA+TGG | - | chr1_3:48423579-48423598 | Msa0122080:intron | 25.0% |
! | TCACATACCATGTTATAAAT+AGG | + | chr1_3:48423589-48423608 | None:intergenic | 25.0% |
! | AGAAACATTCTAAATAAGCT+GGG | + | chr1_3:48423919-48423938 | None:intergenic | 25.0% |
! | AAGAAACATTCTAAATAAGC+TGG | + | chr1_3:48423920-48423939 | None:intergenic | 25.0% |
!! | TTTGTTATGGTTATTGCTAT+TGG | - | chr1_3:48424001-48424020 | Msa0122080:CDS | 25.0% |
! | TGGTAATAGTAATTGTTTAC+TGG | - | chr1_3:48424021-48424040 | Msa0122080:CDS | 25.0% |
! | GGTAATAGTAATTGTTTACT+GGG | - | chr1_3:48424022-48424041 | Msa0122080:CDS | 25.0% |
! | GACAATTACTATTCTAACAT+TGG | + | chr1_3:48424281-48424300 | None:intergenic | 25.0% |
!! | TAATTAACTGGCTTCAATAT+TGG | - | chr1_3:48424356-48424375 | Msa0122080:CDS | 25.0% |
!!! | AATAACGACTGATTTTTGAT+GGG | + | chr1_3:48424579-48424598 | None:intergenic | 25.0% |
! | AAAACAAAGACAGATGAAAT+TGG | + | chr1_3:48424604-48424623 | None:intergenic | 25.0% |
! | GTTTGAATATACTCAAAGAA+AGG | + | chr1_3:48424867-48424886 | None:intergenic | 25.0% |
! | AAAAATAAATCAAATTGGCG+TGG | + | chr1_3:48424889-48424908 | None:intergenic | 25.0% |
!!! | CTTTGAACTGTTTTTTAACT+TGG | - | chr1_3:48424950-48424969 | Msa0122080:intron | 25.0% |
! | ACTTACATAACACAACAATT+CGG | - | chr1_3:48425106-48425125 | Msa0122080:intron | 25.0% |
! | AATGTCTTGATCAAATTAAG+AGG | - | chr1_3:48425262-48425281 | Msa0122080:CDS | 25.0% |
! | ATAGCTGTAAACCTTATAAA+CGG | + | chr1_3:48425299-48425318 | None:intergenic | 25.0% |
GTTACTTGAGTTAATCGTAT+AGG | - | chr1_3:48421010-48421029 | Msa0122080:exon | 30.0% | |
!! | AAGTATTGAAAGTCAGGTTT+GGG | + | chr1_3:48421077-48421096 | None:intergenic | 30.0% |
!! | TAAGTATTGAAAGTCAGGTT+TGG | + | chr1_3:48421078-48421097 | None:intergenic | 30.0% |
CACATTTAATGTTGTGATTC+AGG | - | chr1_3:48421319-48421338 | Msa0122080:intron | 30.0% | |
ACACTTATGAATACAAACCT+GGG | + | chr1_3:48421484-48421503 | None:intergenic | 30.0% | |
!!! | ATAAGTGTCAATGTTTTTGG+TGG | - | chr1_3:48421496-48421515 | Msa0122080:intron | 30.0% |
!!! | TATTTGGCTTTTCTGAAAAC+TGG | - | chr1_3:48421619-48421638 | Msa0122080:intron | 30.0% |
!!! | ATTTGGCTTTTCTGAAAACT+GGG | - | chr1_3:48421620-48421639 | Msa0122080:intron | 30.0% |
GACGGTAAATATTTCGATAA+TGG | - | chr1_3:48421747-48421766 | Msa0122080:intron | 30.0% | |
! | ATTAATTTTTGTAGCAGGTG+AGG | - | chr1_3:48421849-48421868 | Msa0122080:intron | 30.0% |
GACTTTAATATTATGCAACC+TGG | + | chr1_3:48422019-48422038 | None:intergenic | 30.0% | |
CTTCCAGAAATATCATTTGA+TGG | - | chr1_3:48422177-48422196 | Msa0122080:intron | 30.0% | |
TACTAAGATATAGAGACTGT+AGG | + | chr1_3:48422268-48422287 | None:intergenic | 30.0% | |
ACATATCTTGTTCATCTTCA+AGG | + | chr1_3:48422364-48422383 | None:intergenic | 30.0% | |
TATGTCAATTAAGATGAGTG+AGG | - | chr1_3:48422379-48422398 | Msa0122080:CDS | 30.0% | |
AGATTCGTTGATACATTATC+AGG | + | chr1_3:48422572-48422591 | None:intergenic | 30.0% | |
CTTCCAGAAATATTATCTGA+TGG | - | chr1_3:48422590-48422609 | Msa0122080:intron | 30.0% | |
GATATAGAAACTGTAGGTAT+AGG | + | chr1_3:48422692-48422711 | None:intergenic | 30.0% | |
AGGATTTAACATTATGCATC+CGG | + | chr1_3:48422890-48422909 | None:intergenic | 30.0% | |
!!! | TGAAAAGGTTTTGGAAATTC+TGG | + | chr1_3:48423090-48423109 | None:intergenic | 30.0% |
!!! | TCTTTTGGTTTTTGCTGAAA+AGG | + | chr1_3:48423105-48423124 | None:intergenic | 30.0% |
AATGTAAGTCACTCAAACAA+GGG | - | chr1_3:48423224-48423243 | Msa0122080:CDS | 30.0% | |
!!! | TTTTTTAGACTCAATGACTC+TGG | + | chr1_3:48423278-48423297 | None:intergenic | 30.0% |
AGTCTAAAAAAATCCAGATC+TGG | - | chr1_3:48423287-48423306 | Msa0122080:CDS | 30.0% | |
ATTGGAAAATTTACCAGATC+TGG | + | chr1_3:48423303-48423322 | None:intergenic | 30.0% | |
TAGATTGTAAATCTTCCAGT+AGG | + | chr1_3:48423624-48423643 | None:intergenic | 30.0% | |
! | TCTTTGATATCACCTTTTAG+AGG | - | chr1_3:48423716-48423735 | Msa0122080:CDS | 30.0% |
GAAACATTCTAAATAAGCTG+GGG | + | chr1_3:48423918-48423937 | None:intergenic | 30.0% | |
!! | CTATTTGATCAGCTTTGTTA+TGG | - | chr1_3:48423988-48424007 | Msa0122080:CDS | 30.0% |
! | CAAAGATTAAATAATGGAGC+CGG | + | chr1_3:48424084-48424103 | None:intergenic | 30.0% |
TACAAGTACAACAGCAAAAT+CGG | + | chr1_3:48424166-48424185 | None:intergenic | 30.0% | |
!!! | AGTTGTATTTTGAAACATGC+CGG | - | chr1_3:48424228-48424247 | Msa0122080:intron | 30.0% |
! | TATGCGAGTTTTGCAATATA+TGG | - | chr1_3:48424332-48424351 | Msa0122080:intron | 30.0% |
! | ATGCGAGTTTTGCAATATAT+GGG | - | chr1_3:48424333-48424352 | Msa0122080:intron | 30.0% |
GCAATATATGGGTAATTAAC+TGG | - | chr1_3:48424344-48424363 | Msa0122080:CDS | 30.0% | |
!! | CAATAACGACTGATTTTTGA+TGG | + | chr1_3:48424580-48424599 | None:intergenic | 30.0% |
!!! | CTTTTCACATTGTTTCTATG+TGG | - | chr1_3:48424624-48424643 | Msa0122080:CDS | 30.0% |
!! | ACATTGTTTCTATGTGGTTT+CGG | - | chr1_3:48424630-48424649 | Msa0122080:CDS | 30.0% |
! | ATTTGAAGTGTAACTCTGTA+AGG | + | chr1_3:48424695-48424714 | None:intergenic | 30.0% |
TTACAGAGTTACACTTCAAA+TGG | - | chr1_3:48424694-48424713 | Msa0122080:CDS | 30.0% | |
GGGTTAACAAAAATAAAGAC+AGG | + | chr1_3:48424720-48424739 | None:intergenic | 30.0% | |
ATTGTAATATCAGTGATAGC+AGG | + | chr1_3:48424772-48424791 | None:intergenic | 30.0% | |
ATATACTCAAAGAAAGGTGA+TGG | + | chr1_3:48424861-48424880 | None:intergenic | 30.0% | |
! | GAAGAAATCAAAACAGCTTT+TGG | - | chr1_3:48425187-48425206 | Msa0122080:CDS | 30.0% |
TCAAATTAAGAGGATCTCAA+TGG | - | chr1_3:48425272-48425291 | Msa0122080:CDS | 30.0% | |
TAGCTGTAAACCTTATAAAC+GGG | + | chr1_3:48425298-48425317 | None:intergenic | 30.0% | |
GTTGAAGAGAAATAAGTCAG+AGG | + | chr1_3:48420711-48420730 | None:intergenic | 35.0% | |
AAGCAAGAAGAAGAAGAAGA+AGG | + | chr1_3:48420799-48420818 | None:intergenic | 35.0% | |
GAACGGTTACATTATACGAT+TGG | - | chr1_3:48420824-48420843 | Msa0122080:three_prime_UTR | 35.0% | |
TGACGAGAATACTTACTTTG+TGG | + | chr1_3:48420908-48420927 | None:intergenic | 35.0% | |
!! | AGGCATTTAACTTGCTTTAC+TGG | - | chr1_3:48421030-48421049 | Msa0122080:intron | 35.0% |
! | TCAAGCTAATGCAAAAGCAT+AGG | - | chr1_3:48421204-48421223 | Msa0122080:intron | 35.0% |
CATTAATAAACAGTGCACAC+TGG | - | chr1_3:48421443-48421462 | Msa0122080:intron | 35.0% | |
CACTTATGAATACAAACCTG+GGG | + | chr1_3:48421483-48421502 | None:intergenic | 35.0% | |
GACACTTATGAATACAAACC+TGG | + | chr1_3:48421485-48421504 | None:intergenic | 35.0% | |
TATCAAGGAACTTTCTCTGA+CGG | - | chr1_3:48421729-48421748 | Msa0122080:intron | 35.0% | |
AAAGTCCATTCCTACTTCTT+CGG | - | chr1_3:48421873-48421892 | Msa0122080:intron | 35.0% | |
AAAGTCTCAAAGAAGATGAG+TGG | - | chr1_3:48421952-48421971 | Msa0122080:intron | 35.0% | |
AAGTCTCAAAGAAGATGAGT+GGG | - | chr1_3:48421953-48421972 | Msa0122080:intron | 35.0% | |
GTAAAAATAGACGTAGTACC+AGG | - | chr1_3:48421998-48422017 | Msa0122080:intron | 35.0% | |
TTATCAGGAACAACAGTATC+CGG | + | chr1_3:48422144-48422163 | None:intergenic | 35.0% | |
!! | AGATTTGCTGGTACATTATC+AGG | + | chr1_3:48422159-48422178 | None:intergenic | 35.0% |
!! | GATATTTCTGGAAGATTTGC+TGG | + | chr1_3:48422171-48422190 | None:intergenic | 35.0% |
GATATAGAGACTGTAGGTAT+AGG | + | chr1_3:48422262-48422281 | None:intergenic | 35.0% | |
TTTAATTGTTGTCGCAGCTT+TGG | - | chr1_3:48422289-48422308 | Msa0122080:intron | 35.0% | |
AAATTCTGTTCCTACGTCTT+TGG | - | chr1_3:48422313-48422332 | Msa0122080:intron | 35.0% | |
! | ATGATTTTCCACAACCTTCA+AGG | + | chr1_3:48422531-48422550 | None:intergenic | 35.0% |
GGTTGTGGAAAATCATGATT+TGG | - | chr1_3:48422535-48422554 | Msa0122080:intron | 35.0% | |
! | TCCTACTTCTTTGTTATCAC+CGG | - | chr1_3:48422752-48422771 | Msa0122080:intron | 35.0% |
ACGGGATATGTCAATTAAGA+CGG | - | chr1_3:48422818-48422837 | Msa0122080:CDS | 35.0% | |
ATATGTCAATTAAGACGGGT+AGG | - | chr1_3:48422823-48422842 | Msa0122080:CDS | 35.0% | |
TATGTCAATTAAGACGGGTA+GGG | - | chr1_3:48422824-48422843 | Msa0122080:CDS | 35.0% | |
GGATTTAACATTATGCATCC+GGG | + | chr1_3:48422889-48422908 | None:intergenic | 35.0% | |
! | TCTTCCCTTTTGTGATTGAA+CGG | + | chr1_3:48423027-48423046 | None:intergenic | 35.0% |
GAAGAGTAAACACAATGTCT+GGG | - | chr1_3:48423042-48423061 | Msa0122080:intron | 35.0% | |
! | GGTTTTTGCTGAAAAGGTTT+TGG | + | chr1_3:48423099-48423118 | None:intergenic | 35.0% |
TCTTCTGTAAAATCTCCTCA+AGG | - | chr1_3:48423197-48423216 | Msa0122080:CDS | 35.0% | |
GAATGTAAGTCACTCAAACA+AGG | - | chr1_3:48423223-48423242 | Msa0122080:CDS | 35.0% | |
!! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1_3:48423524-48423543 | Msa0122080:CDS | 35.0% |
TGATATCTTCAACAACCTAC+TGG | - | chr1_3:48423606-48423625 | Msa0122080:intron | 35.0% | |
! | CTTTTTACATTTTACCGTCC+AGG | - | chr1_3:48423661-48423680 | Msa0122080:intron | 35.0% |
CCTGAATTTCTGTAATCTCA+CGG | + | chr1_3:48423688-48423707 | None:intergenic | 35.0% | |
GAGATTACAGAAATTCAGGA+AGG | - | chr1_3:48423689-48423708 | Msa0122080:CDS | 35.0% | |
AATGATGAAGAGCCTCTAAA+AGG | + | chr1_3:48423731-48423750 | None:intergenic | 35.0% | |
!! | TTTTAGAGGCTCTTCATCAT+TGG | - | chr1_3:48423730-48423749 | Msa0122080:CDS | 35.0% |
TTTAGAGGCTCTTCATCATT+GGG | - | chr1_3:48423731-48423750 | Msa0122080:CDS | 35.0% | |
AGAGATACTTACGCAAAACA+AGG | + | chr1_3:48423831-48423850 | None:intergenic | 35.0% | |
TTCTCACTAATACCTAACTG+AGG | - | chr1_3:48423870-48423889 | Msa0122080:intron | 35.0% | |
ACTAATACCTAACTGAGGTT+CGG | - | chr1_3:48423875-48423894 | Msa0122080:intron | 35.0% | |
TTACTGGGAAATGTTTAAGC+TGG | - | chr1_3:48424037-48424056 | Msa0122080:intron | 35.0% | |
CGGCTCCATTATTTAATCTT+TGG | - | chr1_3:48424082-48424101 | Msa0122080:CDS | 35.0% | |
ACAAGTACAACAGCAAAATC+GGG | + | chr1_3:48424165-48424184 | None:intergenic | 35.0% | |
TTGTACTTGTAGTCTTCAGT+GGG | - | chr1_3:48424175-48424194 | Msa0122080:CDS | 35.0% | |
TCTAACATTGGATTTGCATC+TGG | + | chr1_3:48424269-48424288 | None:intergenic | 35.0% | |
AACAATTCAGTGCCTTAATG+TGG | - | chr1_3:48424411-48424430 | Msa0122080:CDS | 35.0% | |
ACAATTCAGTGCCTTAATGT+GGG | - | chr1_3:48424412-48424431 | Msa0122080:CDS | 35.0% | |
GAATAATTAGTGATGCCGTT+CGG | - | chr1_3:48424454-48424473 | Msa0122080:CDS | 35.0% | |
ATTCAAAAAGGAGGAGAAAC+AGG | + | chr1_3:48424505-48424524 | None:intergenic | 35.0% | |
TTTATCTAATCTGCTGACAG+TGG | + | chr1_3:48424528-48424547 | None:intergenic | 35.0% | |
! | ACTTGGCTATGAAGTTTGTT+TGG | - | chr1_3:48424967-48424986 | Msa0122080:intron | 35.0% |
ATTAGGTGAACTTCTGAATC+TGG | - | chr1_3:48425056-48425075 | Msa0122080:intron | 35.0% | |
! | AACTTCTGAATCTGGTGTTT+TGG | - | chr1_3:48425064-48425083 | Msa0122080:intron | 35.0% |
!! | TGAATCTGGTGTTTTGGATA+TGG | - | chr1_3:48425070-48425089 | Msa0122080:intron | 35.0% |
!! | TGGTGTTTTGGATATGGTTT+GGG | - | chr1_3:48425076-48425095 | Msa0122080:intron | 35.0% |
! | AACTCGTTCAAAGTATTCAC+TGG | - | chr1_3:48425144-48425163 | Msa0122080:intron | 35.0% |
! | AGTATTCACTGGTCAACTTT+TGG | - | chr1_3:48425155-48425174 | Msa0122080:intron | 35.0% |
!! | TTTTGGTTGTTAGTGTAGTC+TGG | - | chr1_3:48425204-48425223 | Msa0122080:CDS | 35.0% |
ACTTCACTTACATGTACATG+TGG | - | chr1_3:48425239-48425258 | Msa0122080:CDS | 35.0% | |
CTAATACATCAACTCGTACA+TGG | + | chr1_3:48425420-48425439 | None:intergenic | 35.0% | |
AGAGAAATAAGTCAGAGGAG+AGG | + | chr1_3:48420706-48420725 | None:intergenic | 40.0% | |
GTGTGAATGAATGCGATGTT+TGG | + | chr1_3:48420733-48420752 | None:intergenic | 40.0% | |
CATCGCATTCATTCACACAA+TGG | - | chr1_3:48420735-48420754 | Msa0122080:three_prime_UTR | 40.0% | |
! | AAGAAGAAGAAGAAGGTGTG+GGG | + | chr1_3:48420792-48420811 | None:intergenic | 40.0% |
! | GAAGAAGAAGAAGAAGGTGT+GGG | + | chr1_3:48420793-48420812 | None:intergenic | 40.0% |
AGAAGAAGAAGAAGAAGGTG+TGG | + | chr1_3:48420794-48420813 | None:intergenic | 40.0% | |
TTCTTCTTGCTTCCAACGAA+CGG | - | chr1_3:48420807-48420826 | Msa0122080:three_prime_UTR | 40.0% | |
CGTATAATGTAACCGTTCGT+TGG | + | chr1_3:48420822-48420841 | None:intergenic | 40.0% | |
CGGTTACATTATACGATTGG+TGG | - | chr1_3:48420827-48420846 | Msa0122080:three_prime_UTR | 40.0% | |
TGGCTCGTTAAATCATCTCA+AGG | - | chr1_3:48420847-48420866 | Msa0122080:three_prime_UTR | 40.0% | |
AGTAGAACAAAGAAGCAAGC+AGG | + | chr1_3:48420954-48420973 | None:intergenic | 40.0% | |
GCTTTACTGGAAAGAATGTC+AGG | - | chr1_3:48421043-48421062 | Msa0122080:intron | 40.0% | |
TATACCATCGACAGTCTCAA+GGG | + | chr1_3:48421403-48421422 | None:intergenic | 40.0% | |
ATATACCATCGACAGTCTCA+AGG | + | chr1_3:48421404-48421423 | None:intergenic | 40.0% | |
AAACAGTGCACACTGGATAA+TGG | - | chr1_3:48421450-48421469 | Msa0122080:intron | 40.0% | |
GTTAGAGAACAACCAGAAAC+CGG | - | chr1_3:48421663-48421682 | Msa0122080:intron | 40.0% | |
CAATACCGAAGAAGTAGGAA+TGG | + | chr1_3:48421881-48421900 | None:intergenic | 40.0% | |
ATGGAGTCTTGCAATTCTCT+GGG | + | chr1_3:48421915-48421934 | None:intergenic | 40.0% | |
AATGGAGTCTTGCAATTCTC+TGG | + | chr1_3:48421916-48421935 | None:intergenic | 40.0% | |
TGAGACTTTGCATTCATCTC+CGG | + | chr1_3:48421941-48421960 | None:intergenic | 40.0% | |
AGTCTCAAAGAAGATGAGTG+GGG | - | chr1_3:48421954-48421973 | Msa0122080:intron | 40.0% | |
GTTGATATTGCTTGTGGTAG+TGG | - | chr1_3:48421976-48421995 | Msa0122080:intron | 40.0% | |
! | ATCCGGATCATGATTTTCGA+CGG | + | chr1_3:48422127-48422146 | None:intergenic | 40.0% |
AGTCCTTAGTACTATGCAAC+CGG | + | chr1_3:48422445-48422464 | None:intergenic | 40.0% | |
TCTTTCTCTGGATTCTTGAG+AGG | + | chr1_3:48422497-48422516 | None:intergenic | 40.0% | |
TCCGGTGATAACAAAGAAGT+AGG | + | chr1_3:48422756-48422775 | None:intergenic | 40.0% | |
TTATCACCGGATAAGACCAT+GGG | - | chr1_3:48422765-48422784 | Msa0122080:intron | 40.0% | |
ACATATCCCGTTCATCTTTG+AGG | + | chr1_3:48422809-48422828 | None:intergenic | 40.0% | |
CGGGATATGTCAATTAAGAC+GGG | - | chr1_3:48422819-48422838 | Msa0122080:CDS | 40.0% | |
GTCAATGTTGTTCATGGTAG+TGG | - | chr1_3:48422846-48422865 | Msa0122080:CDS | 40.0% | |
!! | AATGTTGTTCATGGTAGTGG+CGG | - | chr1_3:48422849-48422868 | Msa0122080:CDS | 40.0% |
TCTTTATCTGGATGTGTTGC+AGG | + | chr1_3:48422942-48422961 | None:intergenic | 40.0% | |
AACACCCGTTCAATCACAAA+AGG | - | chr1_3:48423019-48423038 | Msa0122080:intron | 40.0% | |
ACACCCGTTCAATCACAAAA+GGG | - | chr1_3:48423020-48423039 | Msa0122080:intron | 40.0% | |
! | CTTCCCTTTTGTGATTGAAC+GGG | + | chr1_3:48423026-48423045 | None:intergenic | 40.0% |
GGAAGAGTAAACACAATGTC+TGG | - | chr1_3:48423041-48423060 | Msa0122080:intron | 40.0% | |
! | GGAGATTTTACAGAAGATGC+AGG | + | chr1_3:48423194-48423213 | None:intergenic | 40.0% |
CTGTAAAATCTCCTCAAGGA+AGG | - | chr1_3:48423201-48423220 | Msa0122080:CDS | 40.0% | |
TGACTTACATTCCTTCCTTG+AGG | + | chr1_3:48423215-48423234 | None:intergenic | 40.0% | |
!! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1_3:48423527-48423546 | Msa0122080:CDS | 40.0% |
! | TTCTACCTCCCTTAGAGTTT+TGG | - | chr1_3:48423551-48423570 | Msa0122080:intron | 40.0% |
TGATTGCGCCAAAACTCTAA+GGG | + | chr1_3:48423562-48423581 | None:intergenic | 40.0% | |
TTGATTGCGCCAAAACTCTA+AGG | + | chr1_3:48423563-48423582 | None:intergenic | 40.0% | |
CCGTGAGATTACAGAAATTC+AGG | - | chr1_3:48423685-48423704 | Msa0122080:CDS | 40.0% | |
! | GATTAAATAATGGAGCCGGT+GGG | + | chr1_3:48424080-48424099 | None:intergenic | 40.0% |
! | AGATTAAATAATGGAGCCGG+TGG | + | chr1_3:48424081-48424100 | None:intergenic | 40.0% |
TCGGGACGATAATTCAAGAT+AGG | + | chr1_3:48424147-48424166 | None:intergenic | 40.0% | |
GTTGTACTTGTAGTCTTCAG+TGG | - | chr1_3:48424174-48424193 | Msa0122080:CDS | 40.0% | |
CTGGTAATATAAGCATGAGC+CGG | + | chr1_3:48424250-48424269 | None:intergenic | 40.0% | |
!! | ATTGGCTTGTCACAAATCTC+CGG | - | chr1_3:48424374-48424393 | Msa0122080:CDS | 40.0% |
! | GCACGATTTTACCCACATTA+AGG | + | chr1_3:48424426-48424445 | None:intergenic | 40.0% |
! | TGACAGTGGATTCAAAAAGG+AGG | + | chr1_3:48424514-48424533 | None:intergenic | 40.0% |
! | TGCTGACAGTGGATTCAAAA+AGG | + | chr1_3:48424517-48424536 | None:intergenic | 40.0% |
GGTTTCGGAAACTCAATCAT+AGG | - | chr1_3:48424645-48424664 | Msa0122080:CDS | 40.0% | |
ATCAGTGATAGCAGGACATA+TGG | + | chr1_3:48424764-48424783 | None:intergenic | 40.0% | |
! | TGGCTATGAAGTTTGTTTGG+TGG | - | chr1_3:48424970-48424989 | Msa0122080:intron | 40.0% |
ATGCTTCATAGCAACGAAGT+TGG | - | chr1_3:48425008-48425027 | Msa0122080:intron | 40.0% | |
!! | CTGGTGTTTTGGATATGGTT+TGG | - | chr1_3:48425075-48425094 | Msa0122080:intron | 40.0% |
!! | GGTGTTTTGGATATGGTTTG+GGG | - | chr1_3:48425077-48425096 | Msa0122080:intron | 40.0% |
ATCTCAATGGCCCGTTTATA+AGG | - | chr1_3:48425285-48425304 | Msa0122080:CDS | 40.0% | |
ATACATCAACTCGTACATGG+AGG | + | chr1_3:48425417-48425436 | None:intergenic | 40.0% | |
GGGGTGCAATTAGAAGAACT+GGG | + | chr1_3:48420772-48420791 | None:intergenic | 45.0% | |
! | AGAAGAAGAAGAAGGTGTGG+GGG | + | chr1_3:48420791-48420810 | None:intergenic | 45.0% |
TTACTTTGTGGAAGAGACGC+CGG | + | chr1_3:48420896-48420915 | None:intergenic | 45.0% | |
GAACAAAGAAGCAAGCAGGT+GGG | + | chr1_3:48420950-48420969 | None:intergenic | 45.0% | |
AGAACAAAGAAGCAAGCAGG+TGG | + | chr1_3:48420951-48420970 | None:intergenic | 45.0% | |
!! | GGATAATGGTTTTACTCCCC+AGG | - | chr1_3:48421464-48421483 | Msa0122080:intron | 45.0% |
TGTTTCATTGCTACCCCTGA+TGG | - | chr1_3:48421548-48421567 | Msa0122080:intron | 45.0% | |
!! | ACCAGAAACCGGTACTGATT+CGG | - | chr1_3:48421674-48421693 | Msa0122080:intron | 45.0% |
!! | TGATTCGGGCAATGCTGTTT+TGG | - | chr1_3:48421689-48421708 | Msa0122080:intron | 45.0% |
TCAGGCAATACCGAAGAAGT+AGG | + | chr1_3:48421886-48421905 | None:intergenic | 45.0% | |
TTCTTCGGTATTGCCTGAAG+AGG | - | chr1_3:48421888-48421907 | Msa0122080:intron | 45.0% | |
TGGAGTCTTGCAATTCTCTG+GGG | + | chr1_3:48421914-48421933 | None:intergenic | 45.0% | |
AATTGCAAGACTCCATTCCC+CGG | - | chr1_3:48421919-48421938 | Msa0122080:intron | 45.0% | |
AGACTTTGCATTCATCTCCG+GGG | + | chr1_3:48421939-48421958 | None:intergenic | 45.0% | |
GAGACTTTGCATTCATCTCC+GGG | + | chr1_3:48421940-48421959 | None:intergenic | 45.0% | |
!! | AGTGGGGTTGATATTGCTTG+TGG | - | chr1_3:48421970-48421989 | Msa0122080:intron | 45.0% |
TCTTCATCTGAACGCTTGAG+AGG | + | chr1_3:48422084-48422103 | None:intergenic | 45.0% | |
! | ATGATTTTCGACGGCCTTTG+AGG | + | chr1_3:48422118-48422137 | None:intergenic | 45.0% |
AGTGAGGTCAACGATGTTCA+TGG | - | chr1_3:48422395-48422414 | Msa0122080:intron | 45.0% | |
TTGAGAGGATCTCCATATGC+AGG | + | chr1_3:48422482-48422501 | None:intergenic | 45.0% | |
TTCAAATGTTGTCGCAGCTG+TGG | - | chr1_3:48422719-48422738 | Msa0122080:intron | 45.0% | |
GTTATCACCGGATAAGACCA+TGG | - | chr1_3:48422764-48422783 | Msa0122080:intron | 45.0% | |
AGGCACTCCTCAAAGATGAA+CGG | - | chr1_3:48422799-48422818 | Msa0122080:CDS | 45.0% | |
GGTAGGGTCAATGTTGTTCA+TGG | - | chr1_3:48422840-48422859 | Msa0122080:CDS | 45.0% | |
!! | ATGTTGTTCATGGTAGTGGC+GGG | - | chr1_3:48422850-48422869 | Msa0122080:CDS | 45.0% |
! | GCAGAGATCTGGTCTTTATC+TGG | + | chr1_3:48422954-48422973 | None:intergenic | 45.0% |
TCCTCCATCAGTCATTTCCA+AGG | + | chr1_3:48422985-48423004 | None:intergenic | 45.0% | |
AGTAAACACAATGTCTGGGC+AGG | - | chr1_3:48423046-48423065 | Msa0122080:CDS | 45.0% | |
GGCGACAATTGAAACAGAAG+CGG | - | chr1_3:48423142-48423161 | Msa0122080:CDS | 45.0% | |
! | CAATGACTCTGGAGAAACTG+TGG | + | chr1_3:48423267-48423286 | None:intergenic | 45.0% |
!! | TAGCATTGGCTGAGAAGTGT+TGG | + | chr1_3:48423445-48423464 | None:intergenic | 45.0% |
TTTCTGTAATCTCACGGTCC+TGG | + | chr1_3:48423682-48423701 | None:intergenic | 45.0% | |
CTAACTGAGGTTCGGAAGAA+GGG | - | chr1_3:48423883-48423902 | Msa0122080:intron | 45.0% | |
AACGTAGAACTCTAACCCAC+CGG | - | chr1_3:48424062-48424081 | Msa0122080:CDS | 45.0% | |
CTTATGCGTCTCATACCGAA+CGG | + | chr1_3:48424472-48424491 | None:intergenic | 45.0% | |
AAAAGGAGGAGAAACAGGCT+TGG | + | chr1_3:48424500-48424519 | None:intergenic | 45.0% | |
GTGATAGCAGGACATATGGT+TGG | + | chr1_3:48424760-48424779 | None:intergenic | 45.0% | |
AACTCGTACATGGAGGAGAT+TGG | + | chr1_3:48425410-48425429 | None:intergenic | 45.0% | |
TCTCTCTCTCTCACGCTGTA+CGG | + | chr1_3:48420677-48420696 | None:intergenic | 50.0% | |
! | GGGGGTGCAATTAGAAGAAC+TGG | + | chr1_3:48420773-48420792 | None:intergenic | 50.0% |
AACCACCGTTTAGCCATCTC+CGG | - | chr1_3:48420874-48420893 | Msa0122080:three_prime_UTR | 50.0% | |
!! | GATTCAGGGAAGAAGCGCTT+CGG | - | chr1_3:48421334-48421353 | Msa0122080:intron | 50.0% |
!! | ATTCAGGGAAGAAGCGCTTC+GGG | - | chr1_3:48421335-48421354 | Msa0122080:intron | 50.0% |
GTTTCCCTTGAGACTGTCGA+TGG | - | chr1_3:48421396-48421415 | Msa0122080:intron | 50.0% | |
!! | CCAGAAACCGGTACTGATTC+GGG | - | chr1_3:48421675-48421694 | Msa0122080:intron | 50.0% |
AGCATTGCCCGAATCAGTAC+CGG | + | chr1_3:48421685-48421704 | None:intergenic | 50.0% | |
TTGCATTCATCTCCGGGGAA+TGG | + | chr1_3:48421934-48421953 | None:intergenic | 50.0% | |
! | CTCGATGTAGGATGCTGCTT+CGG | + | chr1_3:48422057-48422076 | None:intergenic | 50.0% |
AAGCAGCATCCTACATCGAG+AGG | - | chr1_3:48422057-48422076 | Msa0122080:intron | 50.0% | |
TTGAGAGGACCTCTCGATGT+AGG | + | chr1_3:48422069-48422088 | None:intergenic | 50.0% | |
AGAGCCAAGCTCTACCTCAA+AGG | - | chr1_3:48422101-48422120 | Msa0122080:intron | 50.0% | |
GGCCGTCGAAAATCATGATC+CGG | - | chr1_3:48422122-48422141 | Msa0122080:intron | 50.0% | |
TCTCTCGTGACCAAAGACGT+AGG | + | chr1_3:48422326-48422345 | None:intergenic | 50.0% | |
GTCAACGATGTTCATGGCAG+TGG | - | chr1_3:48422401-48422420 | Msa0122080:intron | 50.0% | |
TGGCCGGTTGCATAGTACTA+AGG | - | chr1_3:48422439-48422458 | Msa0122080:intron | 50.0% | |
CATATGCAGGCTGCTTCTTC+TGG | + | chr1_3:48422469-48422488 | None:intergenic | 50.0% | |
CAGAAGAAGCAGCCTGCATA+TGG | - | chr1_3:48422467-48422486 | Msa0122080:intron | 50.0% | |
GTAGAGCTCTGCTCTTTCTC+TGG | + | chr1_3:48422509-48422528 | None:intergenic | 50.0% | |
AGAGCAGAGCTCTACCTTGA+AGG | - | chr1_3:48422514-48422533 | Msa0122080:CDS | 50.0% | |
GAGCTCTACCTTGAAGGTTG+TGG | - | chr1_3:48422520-48422539 | Msa0122080:CDS | 50.0% | |
!! | CGATCTCCCATGGTCTTATC+CGG | + | chr1_3:48422774-48422793 | None:intergenic | 50.0% |
GACCATGGGAGATCGCAATA+AGG | - | chr1_3:48422779-48422798 | Msa0122080:intron | 50.0% | |
! | TGCCTTATTGCGATCTCCCA+TGG | + | chr1_3:48422784-48422803 | None:intergenic | 50.0% |
GGCACTCCTCAAAGATGAAC+GGG | - | chr1_3:48422800-48422819 | Msa0122080:CDS | 50.0% | |
AGCAGGTTGCTTCTTCTGGT+AGG | + | chr1_3:48422910-48422929 | None:intergenic | 50.0% | |
CAGTAGCAGGTTGCTTCTTC+TGG | + | chr1_3:48422914-48422933 | None:intergenic | 50.0% | |
CAGAAGAAGCAACCTGCTAC+TGG | - | chr1_3:48422912-48422931 | Msa0122080:CDS | 50.0% | |
AGTCATTTCCAAGGCTGCTG+AGG | + | chr1_3:48422976-48422995 | None:intergenic | 50.0% | |
GCAGCCTTGGAAATGACTGA+TGG | - | chr1_3:48422978-48422997 | Msa0122080:CDS | 50.0% | |
GCCTTGGAAATGACTGATGG+AGG | - | chr1_3:48422981-48423000 | Msa0122080:CDS | 50.0% | |
GGAAATGACTGATGGAGGAC+TGG | - | chr1_3:48422986-48423005 | Msa0122080:CDS | 50.0% | |
! | TTGCGCCAAAACTCTAAGGG+AGG | + | chr1_3:48423559-48423578 | None:intergenic | 50.0% |
TGTAATCTCACGGTCCTGGA+CGG | + | chr1_3:48423678-48423697 | None:intergenic | 50.0% | |
CCTTCTTCCGAACCTCAGTT+AGG | + | chr1_3:48423885-48423904 | None:intergenic | 50.0% | |
CCTAACTGAGGTTCGGAAGA+AGG | - | chr1_3:48423882-48423901 | Msa0122080:intron | 50.0% | |
TGAGGTTCGGAAGAAGGGTA+GGG | - | chr1_3:48423888-48423907 | Msa0122080:intron | 50.0% | |
! | TTGTTTTCCTCTCCAAGCGC+CGG | + | chr1_3:48424396-48424415 | None:intergenic | 50.0% |
AGACGCCGGAGATGGCTAAA+CGG | + | chr1_3:48420882-48420901 | None:intergenic | 55.0% | |
!! | CCCGAATCAGTACCGGTTTC+TGG | + | chr1_3:48421678-48421697 | None:intergenic | 55.0% |
!! | CAATTCTCTGGGGCCTCTTC+AGG | + | chr1_3:48421904-48421923 | None:intergenic | 55.0% |
!! | ACGGCCTTTGAGGTAGAGCT+TGG | + | chr1_3:48422108-48422127 | None:intergenic | 55.0% |
ACGATGTTCATGGCAGTGGC+CGG | - | chr1_3:48422405-48422424 | Msa0122080:intron | 55.0% | |
GTTGCAGGATCTCCAGTAGC+AGG | + | chr1_3:48422927-48422946 | None:intergenic | 55.0% | |
GAGGCTCTTCATCATTGGGC+AGG | - | chr1_3:48423735-48423754 | Msa0122080:CDS | 55.0% | |
CTGAGGTTCGGAAGAAGGGT+AGG | - | chr1_3:48423887-48423906 | Msa0122080:intron | 55.0% | |
TGTCACAAATCTCCGGCGCT+TGG | - | chr1_3:48424381-48424400 | Msa0122080:CDS | 55.0% | |
TGTGGAAGAGACGCCGGAGA+TGG | + | chr1_3:48420890-48420909 | None:intergenic | 60.0% | |
! | AGTGGCCGGACTAGACGTAG+TGG | - | chr1_3:48422419-48422438 | Msa0122080:intron | 60.0% |
ACCGGCCACTACGTCTAGTC+CGG | + | chr1_3:48422427-48422446 | None:intergenic | 60.0% | |
GCGGGAATAGACGTAGTGCC+CGG | - | chr1_3:48422868-48422887 | Msa0122080:CDS | 60.0% | |
AGGCTGCTGAGGCAGAGATC+TGG | + | chr1_3:48422965-48422984 | None:intergenic | 60.0% | |
GATCTCTGCCTCAGCAGCCT+TGG | - | chr1_3:48422965-48422984 | Msa0122080:CDS | 60.0% | |
CAAATCTCCGGCGCTTGGAG+AGG | - | chr1_3:48424386-48424405 | Msa0122080:CDS | 60.0% | |
CGCCGGAGATGGCTAAACGG+TGG | + | chr1_3:48420879-48420898 | None:intergenic | 65.0% | |
! | GCCGGACTAGACGTAGTGGC+CGG | - | chr1_3:48422423-48422442 | Msa0122080:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 48420629 | 48425461 | 48420629 | ID=Msa0122080;Name=Msa0122080 |
chr1_3 | mRNA | 48420629 | 48425461 | 48420629 | ID=Msa0122080-mRNA-1;Parent=Msa0122080;Name=Msa0122080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=125|0.66|0.46|1|0.58|0.38|13|397|542 |
chr1_3 | exon | 48420629 | 48421029 | 48420629 | ID=Msa0122080-mRNA-1:exon:14633;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48422334 | 48422407 | 48422334 | ID=Msa0122080-mRNA-1:exon:14632;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48422490 | 48422548 | 48422490 | ID=Msa0122080-mRNA-1:exon:14631;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48422782 | 48423022 | 48422782 | ID=Msa0122080-mRNA-1:exon:14630;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48423044 | 48423175 | 48423044 | ID=Msa0122080-mRNA-1:exon:14629;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48423191 | 48423354 | 48423191 | ID=Msa0122080-mRNA-1:exon:14628;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48423479 | 48423554 | 48423479 | ID=Msa0122080-mRNA-1:exon:14627;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48423681 | 48423784 | 48423681 | ID=Msa0122080-mRNA-1:exon:14626;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48423892 | 48424045 | 48423892 | ID=Msa0122080-mRNA-1:exon:14625;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48424055 | 48424224 | 48424055 | ID=Msa0122080-mRNA-1:exon:14624;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48424340 | 48424487 | 48424340 | ID=Msa0122080-mRNA-1:exon:14623;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48424605 | 48424749 | 48424605 | ID=Msa0122080-mRNA-1:exon:14622;Parent=Msa0122080-mRNA-1 |
chr1_3 | exon | 48425179 | 48425461 | 48425179 | ID=Msa0122080-mRNA-1:exon:14621;Parent=Msa0122080-mRNA-1 |
chr1_3 | five_prime_UTR | 48425337 | 48425461 | 48425337 | ID=Msa0122080-mRNA-1:five_prime_utr;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48425179 | 48425336 | 48425179 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48424605 | 48424749 | 48424605 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48424340 | 48424487 | 48424340 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48424055 | 48424224 | 48424055 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48423892 | 48424045 | 48423892 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48423681 | 48423784 | 48423681 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48423479 | 48423554 | 48423479 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48423191 | 48423354 | 48423191 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48423044 | 48423175 | 48423044 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48422782 | 48423022 | 48422782 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48422490 | 48422548 | 48422490 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48422334 | 48422407 | 48422334 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | CDS | 48421026 | 48421029 | 48421026 | ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1 |
chr1_3 | three_prime_UTR | 48420629 | 48421025 | 48420629 | ID=Msa0122080-mRNA-1:three_prime_utr;Parent=Msa0122080-mRNA-1 |
Gene Sequence |
Protein sequence |