AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122080 MtrunA17_Chr1g0182621 83.250 597 45 5 1 542 1 597 0.0 954
Msa0122080 MtrunA17_Chr1g0182611 59.885 349 80 4 239 527 131 479 1.22e-121 366
Msa0122080 MtrunA17_Chr1g0182611 60.201 299 114 1 1 294 1 299 4.32e-115 349
Msa0122080 MtrunA17_Chr7g0231611 36.620 142 74 5 1 134 1 134 4.87e-15 76.6
Msa0122080 MtrunA17_Chr5g0416851 36.620 142 74 5 1 134 1 134 5.84e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122080 AT5G02520.2 43.103 116 63 3 18 131 11 125 5.91e-22 100
Msa0122080 AT5G02520.2 45.205 73 39 1 471 542 519 591 7.59e-11 65.1
Msa0122080 AT5G02520.1 43.103 116 63 3 18 131 11 125 6.00e-22 100
Msa0122080 AT5G02520.1 45.205 73 39 1 471 542 518 590 7.91e-11 65.1
Msa0122080 AT5G02520.3 43.103 116 63 3 18 131 11 125 8.68e-22 99.8
Msa0122080 AT1G58210.1 39.130 92 52 1 24 115 64 151 3.53e-15 76.6

Find 139 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGAATCAGTACCGGTTTC+TGG 0.134199 1_3:+48424393 None:intergenic
TTACCATCAGATAATATTTC+TGG 0.175942 1_3:+48423475 None:intergenic
TTACCATCAAATGATATTTC+TGG 0.188236 1_3:+48423888 None:intergenic
AATGGAGTCTTGCAATTCTC+TGG 0.210078 1_3:+48424155 None:intergenic
CAATTCTCTGGGGCCTCTTC+AGG 0.246287 1_3:+48424167 None:intergenic
TTCTACCTCCCTTAGAGTTT+TGG 0.256165 1_3:-48422517 Msa0122080:CDS
GAAGAAATCAAAACAGCTTT+TGG 0.263060 1_3:-48420881 Msa0122080:three_prime_UTR
TCTTTATCTGGATGTGTTGC+AGG 0.273995 1_3:+48423129 None:intergenic
AGATTTGCTGGTACATTATC+AGG 0.278683 1_3:+48423912 None:intergenic
AACTTCTGAATCTGGTGTTT+TGG 0.280867 1_3:-48421004 Msa0122080:three_prime_UTR
ATTGGAAAATTTACCAGATC+TGG 0.281653 1_3:+48422768 None:intergenic
TGATTCGGGCAATGCTGTTT+TGG 0.283336 1_3:-48424379 Msa0122080:CDS
GATATTTCTGGAAGATTTGC+TGG 0.294734 1_3:+48423900 None:intergenic
AAATTCTGTTCCTACGTCTT+TGG 0.304145 1_3:-48423755 Msa0122080:CDS
ATCTCAATGGCCCGTTTATA+AGG 0.306063 1_3:-48420783 Msa0122080:three_prime_UTR
ATTAGGTGAACTTCTGAATC+TGG 0.306686 1_3:-48421012 Msa0122080:intron
TCACATACCATGTTATAAAT+AGG 0.311211 1_3:+48422482 None:intergenic
AGTATTCACTGGTCAACTTT+TGG 0.327826 1_3:-48420913 Msa0122080:three_prime_UTR
ACATATCTTGTTCATCTTCA+AGG 0.335841 1_3:+48423707 None:intergenic
CCGTGAGATTACAGAAATTC+AGG 0.340294 1_3:-48422383 Msa0122080:CDS
TTGATTGCGCCAAAACTCTA+AGG 0.343897 1_3:+48422508 None:intergenic
AGATTCGTTGATACATTATC+AGG 0.360747 1_3:+48423499 None:intergenic
CTTCCAGAAATATCATTTGA+TGG 0.363684 1_3:-48423891 Msa0122080:intron
GCAGAGATCTGGTCTTTATC+TGG 0.371673 1_3:+48423117 None:intergenic
TGAGACTTTGCATTCATCTC+CGG 0.373003 1_3:+48424130 None:intergenic
ATAGCTGTAAACCTTATAAA+CGG 0.376898 1_3:+48420772 None:intergenic
GGTTGTGGAAAATCATGATT+TGG 0.381883 1_3:-48423533 Msa0122080:CDS
CCAGAAACCGGTACTGATTC+GGG 0.383266 1_3:-48424393 Msa0122080:CDS
AATGATGAAGAGCCTCTAAA+AGG 0.383621 1_3:+48422340 None:intergenic
ACCAGAAACCGGTACTGATT+CGG 0.393560 1_3:-48424394 Msa0122080:CDS
ACATATCCCGTTCATCTTTG+AGG 0.399307 1_3:+48423262 None:intergenic
AAACAGTGCACACTGGATAA+TGG 0.412705 1_3:-48424618 Msa0122080:CDS
GTTGATATTGCTTGTGGTAG+TGG 0.415196 1_3:-48424092 Msa0122080:CDS
AGGATTTAACATTATGCATC+CGG 0.417454 1_3:+48423181 None:intergenic
ATGGAGTCTTGCAATTCTCT+GGG 0.433444 1_3:+48424156 None:intergenic
TCCTACTTCTTTGTTATCAC+CGG 0.437184 1_3:-48423316 Msa0122080:CDS
ATTCAGGGAAGAAGCGCTTC+GGG 0.439330 1_3:-48424733 Msa0122080:intron
AAAGTCCATTCCTACTTCTT+CGG 0.439348 1_3:-48424195 Msa0122080:CDS
TTTAGAGGCTCTTCATCATT+GGG 0.442092 1_3:-48422337 Msa0122080:CDS
GATCTCTGCCTCAGCAGCCT+TGG 0.442994 1_3:-48423103 Msa0122080:CDS
GACCATGGGAGATCGCAATA+AGG 0.444355 1_3:-48423289 Msa0122080:CDS
GATTCAGGGAAGAAGCGCTT+CGG 0.444377 1_3:-48424734 Msa0122080:intron
CAGAAGAAGCAACCTGCTAC+TGG 0.444849 1_3:-48423156 Msa0122080:CDS
GGCACTCCTCAAAGATGAAC+GGG 0.449784 1_3:-48423268 Msa0122080:CDS
AACTCGTACATGGAGGAGAT+TGG 0.450451 1_3:+48420661 None:intergenic
AACACCCGTTCAATCACAAA+AGG 0.455345 1_3:-48423049 Msa0122080:CDS
GTCAATGTTGTTCATGGTAG+TGG 0.459300 1_3:-48423222 Msa0122080:CDS
GAGACTTTGCATTCATCTCC+GGG 0.467675 1_3:+48424131 None:intergenic
CGATCTCCCATGGTCTTATC+CGG 0.467896 1_3:+48423297 None:intergenic
GGTAGGGTCAATGTTGTTCA+TGG 0.469284 1_3:-48423228 Msa0122080:CDS
TTGCATTCATCTCCGGGGAA+TGG 0.473283 1_3:+48424137 None:intergenic
TAGCTGTAAACCTTATAAAC+GGG 0.474870 1_3:+48420773 None:intergenic
ACGGCCTTTGAGGTAGAGCT+TGG 0.476441 1_3:+48423963 None:intergenic
GAACGGTTACATTATACGAT+TGG 0.482529 1_3:-48425244 Msa0122080:CDS
CTCGATGTAGGATGCTGCTT+CGG 0.487404 1_3:+48424014 None:intergenic
AGGCTGCTGAGGCAGAGATC+TGG 0.487795 1_3:+48423106 None:intergenic
GTGTGAATGAATGCGATGTT+TGG 0.488330 1_3:+48425338 None:intergenic
TTATCAGGAACAACAGTATC+CGG 0.501961 1_3:+48423927 None:intergenic
TTCTTCTTGCTTCCAACGAA+CGG 0.503942 1_3:-48425261 Msa0122080:CDS
GGCCGTCGAAAATCATGATC+CGG 0.505332 1_3:-48423946 Msa0122080:CDS
ACTTACATAACACAACAATT+CGG 0.521806 1_3:-48420962 Msa0122080:three_prime_UTR
GAGGCTCTTCATCATTGGGC+AGG 0.522623 1_3:-48422333 Msa0122080:intron
TGCCTTATTGCGATCTCCCA+TGG 0.525598 1_3:+48423287 None:intergenic
CGTATAATGTAACCGTTCGT+TGG 0.528108 1_3:+48425249 None:intergenic
AACTCGTTCAAAGTATTCAC+TGG 0.532753 1_3:-48420924 Msa0122080:three_prime_UTR
AGCATTGCCCGAATCAGTAC+CGG 0.533197 1_3:+48424386 None:intergenic
GTTAGAGAACAACCAGAAAC+CGG 0.534072 1_3:-48424405 Msa0122080:CDS
CTAATACATCAACTCGTACA+TGG 0.534739 1_3:+48420651 None:intergenic
CGGTTACATTATACGATTGG+TGG 0.540059 1_3:-48425241 Msa0122080:CDS
GGAAATGACTGATGGAGGAC+TGG 0.545081 1_3:-48423082 Msa0122080:CDS
GACTTTAATATTATGCAACC+TGG 0.548218 1_3:+48424052 None:intergenic
TATCAAGGAACTTTCTCTGA+CGG 0.548904 1_3:-48424339 Msa0122080:intron
AGACGCCGGAGATGGCTAAA+CGG 0.549320 1_3:+48425189 None:intergenic
TCAGGCAATACCGAAGAAGT+AGG 0.549862 1_3:+48424185 None:intergenic
GTTGAAGAGAAATAAGTCAG+AGG 0.551672 1_3:+48425360 None:intergenic
CCTGAATTTCTGTAATCTCA+CGG 0.553835 1_3:+48422383 None:intergenic
TCAAATTAAGAGGATCTCAA+TGG 0.553847 1_3:-48420796 Msa0122080:three_prime_UTR
AAGTCTCAAAGAAGATGAGT+GGG 0.555389 1_3:-48424115 Msa0122080:CDS
AACCACCGTTTAGCCATCTC+CGG 0.558688 1_3:-48425194 Msa0122080:CDS
GTTGCAGGATCTCCAGTAGC+AGG 0.559749 1_3:+48423144 None:intergenic
GCAGCCTTGGAAATGACTGA+TGG 0.560856 1_3:-48423090 Msa0122080:CDS
TGTGGAAGAGACGCCGGAGA+TGG 0.563212 1_3:+48425181 None:intergenic
GCGGGAATAGACGTAGTGCC+CGG 0.565247 1_3:-48423200 Msa0122080:CDS
TCCGGTGATAACAAAGAAGT+AGG 0.566020 1_3:+48423315 None:intergenic
TTGAGAGGACCTCTCGATGT+AGG 0.566402 1_3:+48424002 None:intergenic
CGGGATATGTCAATTAAGAC+GGG 0.568225 1_3:-48423249 Msa0122080:CDS
ACGGGATATGTCAATTAAGA+CGG 0.571346 1_3:-48423250 Msa0122080:CDS
AGAAGAAGAAGAAGGTGTGG+GGG 0.572575 1_3:+48425280 None:intergenic
ATATGTCAATTAAGACGGGT+AGG 0.573298 1_3:-48423245 Msa0122080:CDS
AATTGCAAGACTCCATTCCC+CGG 0.573734 1_3:-48424149 Msa0122080:CDS
CTGTAAAATCTCCTCAAGGA+AGG 0.576048 1_3:-48422867 Msa0122080:CDS
TCTTCATCTGAACGCTTGAG+AGG 0.576282 1_3:+48423987 None:intergenic
AGTGGGGTTGATATTGCTTG+TGG 0.577027 1_3:-48424098 Msa0122080:CDS
TTCTTCGGTATTGCCTGAAG+AGG 0.578425 1_3:-48424180 Msa0122080:CDS
GAATGTAAGTCACTCAAACA+AGG 0.580926 1_3:-48422845 Msa0122080:CDS
TGACTTACATTCCTTCCTTG+AGG 0.581463 1_3:+48422856 None:intergenic
AATGTCTTGATCAAATTAAG+AGG 0.585332 1_3:-48420806 Msa0122080:three_prime_UTR
GGATTTAACATTATGCATCC+GGG 0.586374 1_3:+48423182 None:intergenic
ATGTTGTTCATGGTAGTGGC+GGG 0.588592 1_3:-48423218 Msa0122080:CDS
AGTCATTTCCAAGGCTGCTG+AGG 0.594162 1_3:+48423095 None:intergenic
CTTCCAGAAATATTATCTGA+TGG 0.594536 1_3:-48423478 Msa0122080:intron
CATTAATAAACAGTGCACAC+TGG 0.598333 1_3:-48424625 Msa0122080:CDS
ACACCCGTTCAATCACAAAA+GGG 0.599424 1_3:-48423048 Msa0122080:CDS
AGAGAAATAAGTCAGAGGAG+AGG 0.599649 1_3:+48425365 None:intergenic
CAATACCGAAGAAGTAGGAA+TGG 0.601021 1_3:+48424190 None:intergenic
TCCTCCATCAGTCATTTCCA+AGG 0.602323 1_3:+48423086 None:intergenic
AGGCACTCCTCAAAGATGAA+CGG 0.602783 1_3:-48423269 Msa0122080:CDS
AATGTTGTTCATGGTAGTGG+CGG 0.603017 1_3:-48423219 Msa0122080:CDS
TGATTGCGCCAAAACTCTAA+GGG 0.604798 1_3:+48422509 None:intergenic
GTTATCACCGGATAAGACCA+TGG 0.605592 1_3:-48423304 Msa0122080:CDS
AATGTAAGTCACTCAAACAA+GGG 0.606573 1_3:-48422844 Msa0122080:CDS
GCCTTGGAAATGACTGATGG+AGG 0.606817 1_3:-48423087 Msa0122080:CDS
GTTTCCCTTGAGACTGTCGA+TGG 0.607459 1_3:-48424672 Msa0122080:CDS
ATATACCATCGACAGTCTCA+AGG 0.611734 1_3:+48424667 None:intergenic
AGAGCCAAGCTCTACCTCAA+AGG 0.621891 1_3:-48423967 Msa0122080:CDS
AAAGTCTCAAAGAAGATGAG+TGG 0.624361 1_3:-48424116 Msa0122080:CDS
TATGTCAATTAAGACGGGTA+GGG 0.624553 1_3:-48423244 Msa0122080:CDS
TTATCACCGGATAAGACCAT+GGG 0.624895 1_3:-48423303 Msa0122080:CDS
TTACTTTGTGGAAGAGACGC+CGG 0.624985 1_3:+48425175 None:intergenic
TATTATCAAAAGATATGATG+AGG 0.626070 1_3:-48424694 Msa0122080:CDS
TCTTCTGTAAAATCTCCTCA+AGG 0.626237 1_3:-48422871 Msa0122080:CDS
TATACCATCGACAGTCTCAA+GGG 0.636705 1_3:+48424668 None:intergenic
CAATGACTCTGGAGAAACTG+TGG 0.637102 1_3:+48422804 None:intergenic
TGGCTCGTTAAATCATCTCA+AGG 0.637214 1_3:-48425221 Msa0122080:CDS
TCAACAACCTATTTATAACA+TGG 0.640146 1_3:-48422489 Msa0122080:intron
GAGATTACAGAAATTCAGGA+AGG 0.641599 1_3:-48422379 Msa0122080:CDS
GGCGACAATTGAAACAGAAG+CGG 0.644820 1_3:-48422926 Msa0122080:CDS
TGGAGTCTTGCAATTCTCTG+GGG 0.655923 1_3:+48424157 None:intergenic
CATCGCATTCATTCACACAA+TGG 0.658461 1_3:-48425333 Msa0122080:exon
ACTTCACTTACATGTACATG+TGG 0.661658 1_3:-48420829 Msa0122080:three_prime_UTR
AAGCAGCATCCTACATCGAG+AGG 0.662773 1_3:-48424011 Msa0122080:CDS
TATGTCAATTAAGATGAGTG+AGG 0.667369 1_3:-48423689 Msa0122080:CDS
CGCCGGAGATGGCTAAACGG+TGG 0.689679 1_3:+48425192 None:intergenic
AGACTTTGCATTCATCTCCG+GGG 0.700085 1_3:+48424132 None:intergenic
TTGCGCCAAAACTCTAAGGG+AGG 0.703796 1_3:+48422512 None:intergenic
GGGGTGCAATTAGAAGAACT+GGG 0.727442 1_3:+48425299 None:intergenic
AGTCTCAAAGAAGATGAGTG+GGG 0.750570 1_3:-48424114 Msa0122080:CDS
TCTCTCGTGACCAAAGACGT+AGG 0.753414 1_3:+48423745 None:intergenic
ATACATCAACTCGTACATGG+AGG 0.753862 1_3:+48420654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAAAAAAAAAATCTAA+AGG + chr1_3:48423972-48423991 None:intergenic 10.0%
!! TGGAAAAATAAATAAATTAA+GGG + chr1_3:48424740-48424759 None:intergenic 10.0%
!! TTGGAAAAATAAATAAATTA+AGG + chr1_3:48424741-48424760 None:intergenic 10.0%
!!! ATAGTTTTTGTTAATTTCAT+CGG - chr1_3:48421098-48421117 Msa0122080:intron 15.0%
!!! ATTTTCAAGAGTTTTTTATT+TGG - chr1_3:48421603-48421622 Msa0122080:intron 15.0%
!!! TTTTTTCTTATAACATCTTT+TGG + chr1_3:48423120-48423139 None:intergenic 15.0%
!! AAAGATGTTATAAGAAAAAA+AGG - chr1_3:48423120-48423139 Msa0122080:CDS 15.0%
!! AAGATGTTATAAGAAAAAAA+GGG - chr1_3:48423121-48423140 Msa0122080:CDS 15.0%
!! TGTAAAAAAAAAACAATGAT+TGG + chr1_3:48423321-48423340 None:intergenic 15.0%
!!! TTTCTTTATGTTATTTTTGA+AGG - chr1_3:48423934-48423953 Msa0122080:CDS 15.0%
!!! AATAGATGATCTTATAATTT+TGG - chr1_3:48424105-48424124 Msa0122080:CDS 15.0%
!!! TTTTTTTTTCTTAGATGAAG+TGG - chr1_3:48420642-48420661 Msa0122080:three_prime_UTR 20.0%
!!! TTTTTTTTCTTAGATGAAGT+GGG - chr1_3:48420643-48420662 Msa0122080:three_prime_UTR 20.0%
!! GTTAACACTAAACTATAAAT+TGG - chr1_3:48421159-48421178 Msa0122080:intron 20.0%
!! AAATATAAAAACAGTTACTG+TGG - chr1_3:48421270-48421289 Msa0122080:intron 20.0%
!!! TCATCATATCTTTTGATAAT+AGG + chr1_3:48421375-48421394 None:intergenic 20.0%
!! TATTATCAAAAGATATGATG+AGG - chr1_3:48421374-48421393 Msa0122080:intron 20.0%
!!! ATGGTATATATGTTTTGATT+AGG - chr1_3:48421415-48421434 Msa0122080:intron 20.0%
!!! TGGTATATATGTTTTGATTA+GGG - chr1_3:48421416-48421435 Msa0122080:intron 20.0%
!! AAAAAAACAAAAATCCATCA+GGG + chr1_3:48421565-48421584 None:intergenic 20.0%
!!! TGTTTTTTTCTTCTATTTCA+TGG - chr1_3:48421576-48421595 Msa0122080:intron 20.0%
!!! AATGAATTTGCATTTTATCA+AGG - chr1_3:48421714-48421733 Msa0122080:intron 20.0%
!!! GTTTTATTAATTTTTGTAGC+AGG - chr1_3:48421844-48421863 Msa0122080:intron 20.0%
!! TATTAAGATATAGAAACTGT+AGG + chr1_3:48422698-48422717 None:intergenic 20.0%
!!! GGTTTAATAATTTTTCTCTT+AGG + chr1_3:48423173-48423192 None:intergenic 20.0%
!! GAGTGTATATATTATCAATT+AGG + chr1_3:48423389-48423408 None:intergenic 20.0%
!! TTTACTCTATTCTTTATGTT+TGG - chr1_3:48423507-48423526 Msa0122080:CDS 20.0%
!! TTACTCTATTCTTTATGTTT+GGG - chr1_3:48423508-48423527 Msa0122080:CDS 20.0%
!!! GAGAATTTTTTAAGTTAGTT+GGG + chr1_3:48423855-48423874 None:intergenic 20.0%
!!! TGAGAATTTTTTAAGTTAGT+TGG + chr1_3:48423856-48423875 None:intergenic 20.0%
!! AAAAAAAAATCTAAAGGAAC+TGG + chr1_3:48423966-48423985 None:intergenic 20.0%
!! CTATTCCAAAGATTAAATAA+TGG + chr1_3:48424090-48424109 None:intergenic 20.0%
!!! TATAATTTTGGAATGATACT+TGG - chr1_3:48424117-48424136 Msa0122080:CDS 20.0%
!!! CAGATTAGATAAATGTATTT+TGG - chr1_3:48424535-48424554 Msa0122080:intron 20.0%
!! GACAGAAAAATAAATCAAAT+TGG + chr1_3:48424894-48424913 None:intergenic 20.0%
!!! ATGATTCGTTGTTTTTTATT+AGG - chr1_3:48425039-48425058 Msa0122080:intron 20.0%
! TTCTGATTCAACAAGATTAT+TGG + chr1_3:48420984-48421003 None:intergenic 25.0%
! AATCTTGTTGAATCAGAAAT+TGG - chr1_3:48420986-48421005 Msa0122080:three_prime_UTR 25.0%
!!! ACTATTAAGTATTGAAAGTC+AGG + chr1_3:48421083-48421102 None:intergenic 25.0%
!!! ATCGGTTTTGAATTTATGTT+TGG - chr1_3:48421116-48421135 Msa0122080:intron 25.0%
! ACATTTAATGTTGTGATTCA+GGG - chr1_3:48421320-48421339 Msa0122080:intron 25.0%
!!! ATATCTTTTGATAATAGGAG+CGG + chr1_3:48421370-48421389 None:intergenic 25.0%
!!! GGTATATATGTTTTGATTAG+GGG - chr1_3:48421417-48421436 Msa0122080:intron 25.0%
!! TTCATAAGTGTCAATGTTTT+TGG - chr1_3:48421493-48421512 Msa0122080:intron 25.0%
!! TTGCAAGATATTGTTGATAA+TGG - chr1_3:48421525-48421544 Msa0122080:intron 25.0%
! AAAAAACAAAAATCCATCAG+GGG + chr1_3:48421564-48421583 None:intergenic 25.0%
! GAAAAAAACAAAAATCCATC+AGG + chr1_3:48421566-48421585 None:intergenic 25.0%
! TTACCATCAAATGATATTTC+TGG + chr1_3:48422183-48422202 None:intergenic 25.0%
! TTACCATCAGATAATATTTC+TGG + chr1_3:48422596-48422615 None:intergenic 25.0%
! CTTCATGAATAAACAATGAT+TGG + chr1_3:48423351-48423370 None:intergenic 25.0%
! AAAAATGCTAACAATAGCAT+TGG + chr1_3:48423459-48423478 None:intergenic 25.0%
!! ATTGTTAGCATTTTTGTACA+TGG - chr1_3:48423464-48423483 Msa0122080:intron 25.0%
!!! TTATGTTTGGGTTATTTTGT+AGG - chr1_3:48423520-48423539 Msa0122080:CDS 25.0%
! TCAACAACCTATTTATAACA+TGG - chr1_3:48423579-48423598 Msa0122080:intron 25.0%
! TCACATACCATGTTATAAAT+AGG + chr1_3:48423589-48423608 None:intergenic 25.0%
! AGAAACATTCTAAATAAGCT+GGG + chr1_3:48423919-48423938 None:intergenic 25.0%
! AAGAAACATTCTAAATAAGC+TGG + chr1_3:48423920-48423939 None:intergenic 25.0%
!! TTTGTTATGGTTATTGCTAT+TGG - chr1_3:48424001-48424020 Msa0122080:CDS 25.0%
! TGGTAATAGTAATTGTTTAC+TGG - chr1_3:48424021-48424040 Msa0122080:CDS 25.0%
! GGTAATAGTAATTGTTTACT+GGG - chr1_3:48424022-48424041 Msa0122080:CDS 25.0%
! GACAATTACTATTCTAACAT+TGG + chr1_3:48424281-48424300 None:intergenic 25.0%
!! TAATTAACTGGCTTCAATAT+TGG - chr1_3:48424356-48424375 Msa0122080:CDS 25.0%
!!! AATAACGACTGATTTTTGAT+GGG + chr1_3:48424579-48424598 None:intergenic 25.0%
! AAAACAAAGACAGATGAAAT+TGG + chr1_3:48424604-48424623 None:intergenic 25.0%
! GTTTGAATATACTCAAAGAA+AGG + chr1_3:48424867-48424886 None:intergenic 25.0%
! AAAAATAAATCAAATTGGCG+TGG + chr1_3:48424889-48424908 None:intergenic 25.0%
!!! CTTTGAACTGTTTTTTAACT+TGG - chr1_3:48424950-48424969 Msa0122080:intron 25.0%
! ACTTACATAACACAACAATT+CGG - chr1_3:48425106-48425125 Msa0122080:intron 25.0%
! AATGTCTTGATCAAATTAAG+AGG - chr1_3:48425262-48425281 Msa0122080:CDS 25.0%
! ATAGCTGTAAACCTTATAAA+CGG + chr1_3:48425299-48425318 None:intergenic 25.0%
GTTACTTGAGTTAATCGTAT+AGG - chr1_3:48421010-48421029 Msa0122080:exon 30.0%
!! AAGTATTGAAAGTCAGGTTT+GGG + chr1_3:48421077-48421096 None:intergenic 30.0%
!! TAAGTATTGAAAGTCAGGTT+TGG + chr1_3:48421078-48421097 None:intergenic 30.0%
CACATTTAATGTTGTGATTC+AGG - chr1_3:48421319-48421338 Msa0122080:intron 30.0%
ACACTTATGAATACAAACCT+GGG + chr1_3:48421484-48421503 None:intergenic 30.0%
!!! ATAAGTGTCAATGTTTTTGG+TGG - chr1_3:48421496-48421515 Msa0122080:intron 30.0%
!!! TATTTGGCTTTTCTGAAAAC+TGG - chr1_3:48421619-48421638 Msa0122080:intron 30.0%
!!! ATTTGGCTTTTCTGAAAACT+GGG - chr1_3:48421620-48421639 Msa0122080:intron 30.0%
GACGGTAAATATTTCGATAA+TGG - chr1_3:48421747-48421766 Msa0122080:intron 30.0%
! ATTAATTTTTGTAGCAGGTG+AGG - chr1_3:48421849-48421868 Msa0122080:intron 30.0%
GACTTTAATATTATGCAACC+TGG + chr1_3:48422019-48422038 None:intergenic 30.0%
CTTCCAGAAATATCATTTGA+TGG - chr1_3:48422177-48422196 Msa0122080:intron 30.0%
TACTAAGATATAGAGACTGT+AGG + chr1_3:48422268-48422287 None:intergenic 30.0%
ACATATCTTGTTCATCTTCA+AGG + chr1_3:48422364-48422383 None:intergenic 30.0%
TATGTCAATTAAGATGAGTG+AGG - chr1_3:48422379-48422398 Msa0122080:CDS 30.0%
AGATTCGTTGATACATTATC+AGG + chr1_3:48422572-48422591 None:intergenic 30.0%
CTTCCAGAAATATTATCTGA+TGG - chr1_3:48422590-48422609 Msa0122080:intron 30.0%
GATATAGAAACTGTAGGTAT+AGG + chr1_3:48422692-48422711 None:intergenic 30.0%
AGGATTTAACATTATGCATC+CGG + chr1_3:48422890-48422909 None:intergenic 30.0%
!!! TGAAAAGGTTTTGGAAATTC+TGG + chr1_3:48423090-48423109 None:intergenic 30.0%
!!! TCTTTTGGTTTTTGCTGAAA+AGG + chr1_3:48423105-48423124 None:intergenic 30.0%
AATGTAAGTCACTCAAACAA+GGG - chr1_3:48423224-48423243 Msa0122080:CDS 30.0%
!!! TTTTTTAGACTCAATGACTC+TGG + chr1_3:48423278-48423297 None:intergenic 30.0%
AGTCTAAAAAAATCCAGATC+TGG - chr1_3:48423287-48423306 Msa0122080:CDS 30.0%
ATTGGAAAATTTACCAGATC+TGG + chr1_3:48423303-48423322 None:intergenic 30.0%
TAGATTGTAAATCTTCCAGT+AGG + chr1_3:48423624-48423643 None:intergenic 30.0%
! TCTTTGATATCACCTTTTAG+AGG - chr1_3:48423716-48423735 Msa0122080:CDS 30.0%
GAAACATTCTAAATAAGCTG+GGG + chr1_3:48423918-48423937 None:intergenic 30.0%
!! CTATTTGATCAGCTTTGTTA+TGG - chr1_3:48423988-48424007 Msa0122080:CDS 30.0%
! CAAAGATTAAATAATGGAGC+CGG + chr1_3:48424084-48424103 None:intergenic 30.0%
TACAAGTACAACAGCAAAAT+CGG + chr1_3:48424166-48424185 None:intergenic 30.0%
!!! AGTTGTATTTTGAAACATGC+CGG - chr1_3:48424228-48424247 Msa0122080:intron 30.0%
! TATGCGAGTTTTGCAATATA+TGG - chr1_3:48424332-48424351 Msa0122080:intron 30.0%
! ATGCGAGTTTTGCAATATAT+GGG - chr1_3:48424333-48424352 Msa0122080:intron 30.0%
GCAATATATGGGTAATTAAC+TGG - chr1_3:48424344-48424363 Msa0122080:CDS 30.0%
!! CAATAACGACTGATTTTTGA+TGG + chr1_3:48424580-48424599 None:intergenic 30.0%
!!! CTTTTCACATTGTTTCTATG+TGG - chr1_3:48424624-48424643 Msa0122080:CDS 30.0%
!! ACATTGTTTCTATGTGGTTT+CGG - chr1_3:48424630-48424649 Msa0122080:CDS 30.0%
! ATTTGAAGTGTAACTCTGTA+AGG + chr1_3:48424695-48424714 None:intergenic 30.0%
TTACAGAGTTACACTTCAAA+TGG - chr1_3:48424694-48424713 Msa0122080:CDS 30.0%
GGGTTAACAAAAATAAAGAC+AGG + chr1_3:48424720-48424739 None:intergenic 30.0%
ATTGTAATATCAGTGATAGC+AGG + chr1_3:48424772-48424791 None:intergenic 30.0%
ATATACTCAAAGAAAGGTGA+TGG + chr1_3:48424861-48424880 None:intergenic 30.0%
! GAAGAAATCAAAACAGCTTT+TGG - chr1_3:48425187-48425206 Msa0122080:CDS 30.0%
TCAAATTAAGAGGATCTCAA+TGG - chr1_3:48425272-48425291 Msa0122080:CDS 30.0%
TAGCTGTAAACCTTATAAAC+GGG + chr1_3:48425298-48425317 None:intergenic 30.0%
GTTGAAGAGAAATAAGTCAG+AGG + chr1_3:48420711-48420730 None:intergenic 35.0%
AAGCAAGAAGAAGAAGAAGA+AGG + chr1_3:48420799-48420818 None:intergenic 35.0%
GAACGGTTACATTATACGAT+TGG - chr1_3:48420824-48420843 Msa0122080:three_prime_UTR 35.0%
TGACGAGAATACTTACTTTG+TGG + chr1_3:48420908-48420927 None:intergenic 35.0%
!! AGGCATTTAACTTGCTTTAC+TGG - chr1_3:48421030-48421049 Msa0122080:intron 35.0%
! TCAAGCTAATGCAAAAGCAT+AGG - chr1_3:48421204-48421223 Msa0122080:intron 35.0%
CATTAATAAACAGTGCACAC+TGG - chr1_3:48421443-48421462 Msa0122080:intron 35.0%
CACTTATGAATACAAACCTG+GGG + chr1_3:48421483-48421502 None:intergenic 35.0%
GACACTTATGAATACAAACC+TGG + chr1_3:48421485-48421504 None:intergenic 35.0%
TATCAAGGAACTTTCTCTGA+CGG - chr1_3:48421729-48421748 Msa0122080:intron 35.0%
AAAGTCCATTCCTACTTCTT+CGG - chr1_3:48421873-48421892 Msa0122080:intron 35.0%
AAAGTCTCAAAGAAGATGAG+TGG - chr1_3:48421952-48421971 Msa0122080:intron 35.0%
AAGTCTCAAAGAAGATGAGT+GGG - chr1_3:48421953-48421972 Msa0122080:intron 35.0%
GTAAAAATAGACGTAGTACC+AGG - chr1_3:48421998-48422017 Msa0122080:intron 35.0%
TTATCAGGAACAACAGTATC+CGG + chr1_3:48422144-48422163 None:intergenic 35.0%
!! AGATTTGCTGGTACATTATC+AGG + chr1_3:48422159-48422178 None:intergenic 35.0%
!! GATATTTCTGGAAGATTTGC+TGG + chr1_3:48422171-48422190 None:intergenic 35.0%
GATATAGAGACTGTAGGTAT+AGG + chr1_3:48422262-48422281 None:intergenic 35.0%
TTTAATTGTTGTCGCAGCTT+TGG - chr1_3:48422289-48422308 Msa0122080:intron 35.0%
AAATTCTGTTCCTACGTCTT+TGG - chr1_3:48422313-48422332 Msa0122080:intron 35.0%
! ATGATTTTCCACAACCTTCA+AGG + chr1_3:48422531-48422550 None:intergenic 35.0%
GGTTGTGGAAAATCATGATT+TGG - chr1_3:48422535-48422554 Msa0122080:intron 35.0%
! TCCTACTTCTTTGTTATCAC+CGG - chr1_3:48422752-48422771 Msa0122080:intron 35.0%
ACGGGATATGTCAATTAAGA+CGG - chr1_3:48422818-48422837 Msa0122080:CDS 35.0%
ATATGTCAATTAAGACGGGT+AGG - chr1_3:48422823-48422842 Msa0122080:CDS 35.0%
TATGTCAATTAAGACGGGTA+GGG - chr1_3:48422824-48422843 Msa0122080:CDS 35.0%
GGATTTAACATTATGCATCC+GGG + chr1_3:48422889-48422908 None:intergenic 35.0%
! TCTTCCCTTTTGTGATTGAA+CGG + chr1_3:48423027-48423046 None:intergenic 35.0%
GAAGAGTAAACACAATGTCT+GGG - chr1_3:48423042-48423061 Msa0122080:intron 35.0%
! GGTTTTTGCTGAAAAGGTTT+TGG + chr1_3:48423099-48423118 None:intergenic 35.0%
TCTTCTGTAAAATCTCCTCA+AGG - chr1_3:48423197-48423216 Msa0122080:CDS 35.0%
GAATGTAAGTCACTCAAACA+AGG - chr1_3:48423223-48423242 Msa0122080:CDS 35.0%
!! GTTTGGGTTATTTTGTAGGA+AGG - chr1_3:48423524-48423543 Msa0122080:CDS 35.0%
TGATATCTTCAACAACCTAC+TGG - chr1_3:48423606-48423625 Msa0122080:intron 35.0%
! CTTTTTACATTTTACCGTCC+AGG - chr1_3:48423661-48423680 Msa0122080:intron 35.0%
CCTGAATTTCTGTAATCTCA+CGG + chr1_3:48423688-48423707 None:intergenic 35.0%
GAGATTACAGAAATTCAGGA+AGG - chr1_3:48423689-48423708 Msa0122080:CDS 35.0%
AATGATGAAGAGCCTCTAAA+AGG + chr1_3:48423731-48423750 None:intergenic 35.0%
!! TTTTAGAGGCTCTTCATCAT+TGG - chr1_3:48423730-48423749 Msa0122080:CDS 35.0%
TTTAGAGGCTCTTCATCATT+GGG - chr1_3:48423731-48423750 Msa0122080:CDS 35.0%
AGAGATACTTACGCAAAACA+AGG + chr1_3:48423831-48423850 None:intergenic 35.0%
TTCTCACTAATACCTAACTG+AGG - chr1_3:48423870-48423889 Msa0122080:intron 35.0%
ACTAATACCTAACTGAGGTT+CGG - chr1_3:48423875-48423894 Msa0122080:intron 35.0%
TTACTGGGAAATGTTTAAGC+TGG - chr1_3:48424037-48424056 Msa0122080:intron 35.0%
CGGCTCCATTATTTAATCTT+TGG - chr1_3:48424082-48424101 Msa0122080:CDS 35.0%
ACAAGTACAACAGCAAAATC+GGG + chr1_3:48424165-48424184 None:intergenic 35.0%
TTGTACTTGTAGTCTTCAGT+GGG - chr1_3:48424175-48424194 Msa0122080:CDS 35.0%
TCTAACATTGGATTTGCATC+TGG + chr1_3:48424269-48424288 None:intergenic 35.0%
AACAATTCAGTGCCTTAATG+TGG - chr1_3:48424411-48424430 Msa0122080:CDS 35.0%
ACAATTCAGTGCCTTAATGT+GGG - chr1_3:48424412-48424431 Msa0122080:CDS 35.0%
GAATAATTAGTGATGCCGTT+CGG - chr1_3:48424454-48424473 Msa0122080:CDS 35.0%
ATTCAAAAAGGAGGAGAAAC+AGG + chr1_3:48424505-48424524 None:intergenic 35.0%
TTTATCTAATCTGCTGACAG+TGG + chr1_3:48424528-48424547 None:intergenic 35.0%
! ACTTGGCTATGAAGTTTGTT+TGG - chr1_3:48424967-48424986 Msa0122080:intron 35.0%
ATTAGGTGAACTTCTGAATC+TGG - chr1_3:48425056-48425075 Msa0122080:intron 35.0%
! AACTTCTGAATCTGGTGTTT+TGG - chr1_3:48425064-48425083 Msa0122080:intron 35.0%
!! TGAATCTGGTGTTTTGGATA+TGG - chr1_3:48425070-48425089 Msa0122080:intron 35.0%
!! TGGTGTTTTGGATATGGTTT+GGG - chr1_3:48425076-48425095 Msa0122080:intron 35.0%
! AACTCGTTCAAAGTATTCAC+TGG - chr1_3:48425144-48425163 Msa0122080:intron 35.0%
! AGTATTCACTGGTCAACTTT+TGG - chr1_3:48425155-48425174 Msa0122080:intron 35.0%
!! TTTTGGTTGTTAGTGTAGTC+TGG - chr1_3:48425204-48425223 Msa0122080:CDS 35.0%
ACTTCACTTACATGTACATG+TGG - chr1_3:48425239-48425258 Msa0122080:CDS 35.0%
CTAATACATCAACTCGTACA+TGG + chr1_3:48425420-48425439 None:intergenic 35.0%
AGAGAAATAAGTCAGAGGAG+AGG + chr1_3:48420706-48420725 None:intergenic 40.0%
GTGTGAATGAATGCGATGTT+TGG + chr1_3:48420733-48420752 None:intergenic 40.0%
CATCGCATTCATTCACACAA+TGG - chr1_3:48420735-48420754 Msa0122080:three_prime_UTR 40.0%
! AAGAAGAAGAAGAAGGTGTG+GGG + chr1_3:48420792-48420811 None:intergenic 40.0%
! GAAGAAGAAGAAGAAGGTGT+GGG + chr1_3:48420793-48420812 None:intergenic 40.0%
AGAAGAAGAAGAAGAAGGTG+TGG + chr1_3:48420794-48420813 None:intergenic 40.0%
TTCTTCTTGCTTCCAACGAA+CGG - chr1_3:48420807-48420826 Msa0122080:three_prime_UTR 40.0%
CGTATAATGTAACCGTTCGT+TGG + chr1_3:48420822-48420841 None:intergenic 40.0%
CGGTTACATTATACGATTGG+TGG - chr1_3:48420827-48420846 Msa0122080:three_prime_UTR 40.0%
TGGCTCGTTAAATCATCTCA+AGG - chr1_3:48420847-48420866 Msa0122080:three_prime_UTR 40.0%
AGTAGAACAAAGAAGCAAGC+AGG + chr1_3:48420954-48420973 None:intergenic 40.0%
GCTTTACTGGAAAGAATGTC+AGG - chr1_3:48421043-48421062 Msa0122080:intron 40.0%
TATACCATCGACAGTCTCAA+GGG + chr1_3:48421403-48421422 None:intergenic 40.0%
ATATACCATCGACAGTCTCA+AGG + chr1_3:48421404-48421423 None:intergenic 40.0%
AAACAGTGCACACTGGATAA+TGG - chr1_3:48421450-48421469 Msa0122080:intron 40.0%
GTTAGAGAACAACCAGAAAC+CGG - chr1_3:48421663-48421682 Msa0122080:intron 40.0%
CAATACCGAAGAAGTAGGAA+TGG + chr1_3:48421881-48421900 None:intergenic 40.0%
ATGGAGTCTTGCAATTCTCT+GGG + chr1_3:48421915-48421934 None:intergenic 40.0%
AATGGAGTCTTGCAATTCTC+TGG + chr1_3:48421916-48421935 None:intergenic 40.0%
TGAGACTTTGCATTCATCTC+CGG + chr1_3:48421941-48421960 None:intergenic 40.0%
AGTCTCAAAGAAGATGAGTG+GGG - chr1_3:48421954-48421973 Msa0122080:intron 40.0%
GTTGATATTGCTTGTGGTAG+TGG - chr1_3:48421976-48421995 Msa0122080:intron 40.0%
! ATCCGGATCATGATTTTCGA+CGG + chr1_3:48422127-48422146 None:intergenic 40.0%
AGTCCTTAGTACTATGCAAC+CGG + chr1_3:48422445-48422464 None:intergenic 40.0%
TCTTTCTCTGGATTCTTGAG+AGG + chr1_3:48422497-48422516 None:intergenic 40.0%
TCCGGTGATAACAAAGAAGT+AGG + chr1_3:48422756-48422775 None:intergenic 40.0%
TTATCACCGGATAAGACCAT+GGG - chr1_3:48422765-48422784 Msa0122080:intron 40.0%
ACATATCCCGTTCATCTTTG+AGG + chr1_3:48422809-48422828 None:intergenic 40.0%
CGGGATATGTCAATTAAGAC+GGG - chr1_3:48422819-48422838 Msa0122080:CDS 40.0%
GTCAATGTTGTTCATGGTAG+TGG - chr1_3:48422846-48422865 Msa0122080:CDS 40.0%
!! AATGTTGTTCATGGTAGTGG+CGG - chr1_3:48422849-48422868 Msa0122080:CDS 40.0%
TCTTTATCTGGATGTGTTGC+AGG + chr1_3:48422942-48422961 None:intergenic 40.0%
AACACCCGTTCAATCACAAA+AGG - chr1_3:48423019-48423038 Msa0122080:intron 40.0%
ACACCCGTTCAATCACAAAA+GGG - chr1_3:48423020-48423039 Msa0122080:intron 40.0%
! CTTCCCTTTTGTGATTGAAC+GGG + chr1_3:48423026-48423045 None:intergenic 40.0%
GGAAGAGTAAACACAATGTC+TGG - chr1_3:48423041-48423060 Msa0122080:intron 40.0%
! GGAGATTTTACAGAAGATGC+AGG + chr1_3:48423194-48423213 None:intergenic 40.0%
CTGTAAAATCTCCTCAAGGA+AGG - chr1_3:48423201-48423220 Msa0122080:CDS 40.0%
TGACTTACATTCCTTCCTTG+AGG + chr1_3:48423215-48423234 None:intergenic 40.0%
!! TGGGTTATTTTGTAGGAAGG+TGG - chr1_3:48423527-48423546 Msa0122080:CDS 40.0%
! TTCTACCTCCCTTAGAGTTT+TGG - chr1_3:48423551-48423570 Msa0122080:intron 40.0%
TGATTGCGCCAAAACTCTAA+GGG + chr1_3:48423562-48423581 None:intergenic 40.0%
TTGATTGCGCCAAAACTCTA+AGG + chr1_3:48423563-48423582 None:intergenic 40.0%
CCGTGAGATTACAGAAATTC+AGG - chr1_3:48423685-48423704 Msa0122080:CDS 40.0%
! GATTAAATAATGGAGCCGGT+GGG + chr1_3:48424080-48424099 None:intergenic 40.0%
! AGATTAAATAATGGAGCCGG+TGG + chr1_3:48424081-48424100 None:intergenic 40.0%
TCGGGACGATAATTCAAGAT+AGG + chr1_3:48424147-48424166 None:intergenic 40.0%
GTTGTACTTGTAGTCTTCAG+TGG - chr1_3:48424174-48424193 Msa0122080:CDS 40.0%
CTGGTAATATAAGCATGAGC+CGG + chr1_3:48424250-48424269 None:intergenic 40.0%
!! ATTGGCTTGTCACAAATCTC+CGG - chr1_3:48424374-48424393 Msa0122080:CDS 40.0%
! GCACGATTTTACCCACATTA+AGG + chr1_3:48424426-48424445 None:intergenic 40.0%
! TGACAGTGGATTCAAAAAGG+AGG + chr1_3:48424514-48424533 None:intergenic 40.0%
! TGCTGACAGTGGATTCAAAA+AGG + chr1_3:48424517-48424536 None:intergenic 40.0%
GGTTTCGGAAACTCAATCAT+AGG - chr1_3:48424645-48424664 Msa0122080:CDS 40.0%
ATCAGTGATAGCAGGACATA+TGG + chr1_3:48424764-48424783 None:intergenic 40.0%
! TGGCTATGAAGTTTGTTTGG+TGG - chr1_3:48424970-48424989 Msa0122080:intron 40.0%
ATGCTTCATAGCAACGAAGT+TGG - chr1_3:48425008-48425027 Msa0122080:intron 40.0%
!! CTGGTGTTTTGGATATGGTT+TGG - chr1_3:48425075-48425094 Msa0122080:intron 40.0%
!! GGTGTTTTGGATATGGTTTG+GGG - chr1_3:48425077-48425096 Msa0122080:intron 40.0%
ATCTCAATGGCCCGTTTATA+AGG - chr1_3:48425285-48425304 Msa0122080:CDS 40.0%
ATACATCAACTCGTACATGG+AGG + chr1_3:48425417-48425436 None:intergenic 40.0%
GGGGTGCAATTAGAAGAACT+GGG + chr1_3:48420772-48420791 None:intergenic 45.0%
! AGAAGAAGAAGAAGGTGTGG+GGG + chr1_3:48420791-48420810 None:intergenic 45.0%
TTACTTTGTGGAAGAGACGC+CGG + chr1_3:48420896-48420915 None:intergenic 45.0%
GAACAAAGAAGCAAGCAGGT+GGG + chr1_3:48420950-48420969 None:intergenic 45.0%
AGAACAAAGAAGCAAGCAGG+TGG + chr1_3:48420951-48420970 None:intergenic 45.0%
!! GGATAATGGTTTTACTCCCC+AGG - chr1_3:48421464-48421483 Msa0122080:intron 45.0%
TGTTTCATTGCTACCCCTGA+TGG - chr1_3:48421548-48421567 Msa0122080:intron 45.0%
!! ACCAGAAACCGGTACTGATT+CGG - chr1_3:48421674-48421693 Msa0122080:intron 45.0%
!! TGATTCGGGCAATGCTGTTT+TGG - chr1_3:48421689-48421708 Msa0122080:intron 45.0%
TCAGGCAATACCGAAGAAGT+AGG + chr1_3:48421886-48421905 None:intergenic 45.0%
TTCTTCGGTATTGCCTGAAG+AGG - chr1_3:48421888-48421907 Msa0122080:intron 45.0%
TGGAGTCTTGCAATTCTCTG+GGG + chr1_3:48421914-48421933 None:intergenic 45.0%
AATTGCAAGACTCCATTCCC+CGG - chr1_3:48421919-48421938 Msa0122080:intron 45.0%
AGACTTTGCATTCATCTCCG+GGG + chr1_3:48421939-48421958 None:intergenic 45.0%
GAGACTTTGCATTCATCTCC+GGG + chr1_3:48421940-48421959 None:intergenic 45.0%
!! AGTGGGGTTGATATTGCTTG+TGG - chr1_3:48421970-48421989 Msa0122080:intron 45.0%
TCTTCATCTGAACGCTTGAG+AGG + chr1_3:48422084-48422103 None:intergenic 45.0%
! ATGATTTTCGACGGCCTTTG+AGG + chr1_3:48422118-48422137 None:intergenic 45.0%
AGTGAGGTCAACGATGTTCA+TGG - chr1_3:48422395-48422414 Msa0122080:intron 45.0%
TTGAGAGGATCTCCATATGC+AGG + chr1_3:48422482-48422501 None:intergenic 45.0%
TTCAAATGTTGTCGCAGCTG+TGG - chr1_3:48422719-48422738 Msa0122080:intron 45.0%
GTTATCACCGGATAAGACCA+TGG - chr1_3:48422764-48422783 Msa0122080:intron 45.0%
AGGCACTCCTCAAAGATGAA+CGG - chr1_3:48422799-48422818 Msa0122080:CDS 45.0%
GGTAGGGTCAATGTTGTTCA+TGG - chr1_3:48422840-48422859 Msa0122080:CDS 45.0%
!! ATGTTGTTCATGGTAGTGGC+GGG - chr1_3:48422850-48422869 Msa0122080:CDS 45.0%
! GCAGAGATCTGGTCTTTATC+TGG + chr1_3:48422954-48422973 None:intergenic 45.0%
TCCTCCATCAGTCATTTCCA+AGG + chr1_3:48422985-48423004 None:intergenic 45.0%
AGTAAACACAATGTCTGGGC+AGG - chr1_3:48423046-48423065 Msa0122080:CDS 45.0%
GGCGACAATTGAAACAGAAG+CGG - chr1_3:48423142-48423161 Msa0122080:CDS 45.0%
! CAATGACTCTGGAGAAACTG+TGG + chr1_3:48423267-48423286 None:intergenic 45.0%
!! TAGCATTGGCTGAGAAGTGT+TGG + chr1_3:48423445-48423464 None:intergenic 45.0%
TTTCTGTAATCTCACGGTCC+TGG + chr1_3:48423682-48423701 None:intergenic 45.0%
CTAACTGAGGTTCGGAAGAA+GGG - chr1_3:48423883-48423902 Msa0122080:intron 45.0%
AACGTAGAACTCTAACCCAC+CGG - chr1_3:48424062-48424081 Msa0122080:CDS 45.0%
CTTATGCGTCTCATACCGAA+CGG + chr1_3:48424472-48424491 None:intergenic 45.0%
AAAAGGAGGAGAAACAGGCT+TGG + chr1_3:48424500-48424519 None:intergenic 45.0%
GTGATAGCAGGACATATGGT+TGG + chr1_3:48424760-48424779 None:intergenic 45.0%
AACTCGTACATGGAGGAGAT+TGG + chr1_3:48425410-48425429 None:intergenic 45.0%
TCTCTCTCTCTCACGCTGTA+CGG + chr1_3:48420677-48420696 None:intergenic 50.0%
! GGGGGTGCAATTAGAAGAAC+TGG + chr1_3:48420773-48420792 None:intergenic 50.0%
AACCACCGTTTAGCCATCTC+CGG - chr1_3:48420874-48420893 Msa0122080:three_prime_UTR 50.0%
!! GATTCAGGGAAGAAGCGCTT+CGG - chr1_3:48421334-48421353 Msa0122080:intron 50.0%
!! ATTCAGGGAAGAAGCGCTTC+GGG - chr1_3:48421335-48421354 Msa0122080:intron 50.0%
GTTTCCCTTGAGACTGTCGA+TGG - chr1_3:48421396-48421415 Msa0122080:intron 50.0%
!! CCAGAAACCGGTACTGATTC+GGG - chr1_3:48421675-48421694 Msa0122080:intron 50.0%
AGCATTGCCCGAATCAGTAC+CGG + chr1_3:48421685-48421704 None:intergenic 50.0%
TTGCATTCATCTCCGGGGAA+TGG + chr1_3:48421934-48421953 None:intergenic 50.0%
! CTCGATGTAGGATGCTGCTT+CGG + chr1_3:48422057-48422076 None:intergenic 50.0%
AAGCAGCATCCTACATCGAG+AGG - chr1_3:48422057-48422076 Msa0122080:intron 50.0%
TTGAGAGGACCTCTCGATGT+AGG + chr1_3:48422069-48422088 None:intergenic 50.0%
AGAGCCAAGCTCTACCTCAA+AGG - chr1_3:48422101-48422120 Msa0122080:intron 50.0%
GGCCGTCGAAAATCATGATC+CGG - chr1_3:48422122-48422141 Msa0122080:intron 50.0%
TCTCTCGTGACCAAAGACGT+AGG + chr1_3:48422326-48422345 None:intergenic 50.0%
GTCAACGATGTTCATGGCAG+TGG - chr1_3:48422401-48422420 Msa0122080:intron 50.0%
TGGCCGGTTGCATAGTACTA+AGG - chr1_3:48422439-48422458 Msa0122080:intron 50.0%
CATATGCAGGCTGCTTCTTC+TGG + chr1_3:48422469-48422488 None:intergenic 50.0%
CAGAAGAAGCAGCCTGCATA+TGG - chr1_3:48422467-48422486 Msa0122080:intron 50.0%
GTAGAGCTCTGCTCTTTCTC+TGG + chr1_3:48422509-48422528 None:intergenic 50.0%
AGAGCAGAGCTCTACCTTGA+AGG - chr1_3:48422514-48422533 Msa0122080:CDS 50.0%
GAGCTCTACCTTGAAGGTTG+TGG - chr1_3:48422520-48422539 Msa0122080:CDS 50.0%
!! CGATCTCCCATGGTCTTATC+CGG + chr1_3:48422774-48422793 None:intergenic 50.0%
GACCATGGGAGATCGCAATA+AGG - chr1_3:48422779-48422798 Msa0122080:intron 50.0%
! TGCCTTATTGCGATCTCCCA+TGG + chr1_3:48422784-48422803 None:intergenic 50.0%
GGCACTCCTCAAAGATGAAC+GGG - chr1_3:48422800-48422819 Msa0122080:CDS 50.0%
AGCAGGTTGCTTCTTCTGGT+AGG + chr1_3:48422910-48422929 None:intergenic 50.0%
CAGTAGCAGGTTGCTTCTTC+TGG + chr1_3:48422914-48422933 None:intergenic 50.0%
CAGAAGAAGCAACCTGCTAC+TGG - chr1_3:48422912-48422931 Msa0122080:CDS 50.0%
AGTCATTTCCAAGGCTGCTG+AGG + chr1_3:48422976-48422995 None:intergenic 50.0%
GCAGCCTTGGAAATGACTGA+TGG - chr1_3:48422978-48422997 Msa0122080:CDS 50.0%
GCCTTGGAAATGACTGATGG+AGG - chr1_3:48422981-48423000 Msa0122080:CDS 50.0%
GGAAATGACTGATGGAGGAC+TGG - chr1_3:48422986-48423005 Msa0122080:CDS 50.0%
! TTGCGCCAAAACTCTAAGGG+AGG + chr1_3:48423559-48423578 None:intergenic 50.0%
TGTAATCTCACGGTCCTGGA+CGG + chr1_3:48423678-48423697 None:intergenic 50.0%
CCTTCTTCCGAACCTCAGTT+AGG + chr1_3:48423885-48423904 None:intergenic 50.0%
CCTAACTGAGGTTCGGAAGA+AGG - chr1_3:48423882-48423901 Msa0122080:intron 50.0%
TGAGGTTCGGAAGAAGGGTA+GGG - chr1_3:48423888-48423907 Msa0122080:intron 50.0%
! TTGTTTTCCTCTCCAAGCGC+CGG + chr1_3:48424396-48424415 None:intergenic 50.0%
AGACGCCGGAGATGGCTAAA+CGG + chr1_3:48420882-48420901 None:intergenic 55.0%
!! CCCGAATCAGTACCGGTTTC+TGG + chr1_3:48421678-48421697 None:intergenic 55.0%
!! CAATTCTCTGGGGCCTCTTC+AGG + chr1_3:48421904-48421923 None:intergenic 55.0%
!! ACGGCCTTTGAGGTAGAGCT+TGG + chr1_3:48422108-48422127 None:intergenic 55.0%
ACGATGTTCATGGCAGTGGC+CGG - chr1_3:48422405-48422424 Msa0122080:intron 55.0%
GTTGCAGGATCTCCAGTAGC+AGG + chr1_3:48422927-48422946 None:intergenic 55.0%
GAGGCTCTTCATCATTGGGC+AGG - chr1_3:48423735-48423754 Msa0122080:CDS 55.0%
CTGAGGTTCGGAAGAAGGGT+AGG - chr1_3:48423887-48423906 Msa0122080:intron 55.0%
TGTCACAAATCTCCGGCGCT+TGG - chr1_3:48424381-48424400 Msa0122080:CDS 55.0%
TGTGGAAGAGACGCCGGAGA+TGG + chr1_3:48420890-48420909 None:intergenic 60.0%
! AGTGGCCGGACTAGACGTAG+TGG - chr1_3:48422419-48422438 Msa0122080:intron 60.0%
ACCGGCCACTACGTCTAGTC+CGG + chr1_3:48422427-48422446 None:intergenic 60.0%
GCGGGAATAGACGTAGTGCC+CGG - chr1_3:48422868-48422887 Msa0122080:CDS 60.0%
AGGCTGCTGAGGCAGAGATC+TGG + chr1_3:48422965-48422984 None:intergenic 60.0%
GATCTCTGCCTCAGCAGCCT+TGG - chr1_3:48422965-48422984 Msa0122080:CDS 60.0%
CAAATCTCCGGCGCTTGGAG+AGG - chr1_3:48424386-48424405 Msa0122080:CDS 60.0%
CGCCGGAGATGGCTAAACGG+TGG + chr1_3:48420879-48420898 None:intergenic 65.0%
! GCCGGACTAGACGTAGTGGC+CGG - chr1_3:48422423-48422442 Msa0122080:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48420629 48425461 48420629 ID=Msa0122080;Name=Msa0122080
chr1_3 mRNA 48420629 48425461 48420629 ID=Msa0122080-mRNA-1;Parent=Msa0122080;Name=Msa0122080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=125|0.66|0.46|1|0.58|0.38|13|397|542
chr1_3 exon 48420629 48421029 48420629 ID=Msa0122080-mRNA-1:exon:14633;Parent=Msa0122080-mRNA-1
chr1_3 exon 48422334 48422407 48422334 ID=Msa0122080-mRNA-1:exon:14632;Parent=Msa0122080-mRNA-1
chr1_3 exon 48422490 48422548 48422490 ID=Msa0122080-mRNA-1:exon:14631;Parent=Msa0122080-mRNA-1
chr1_3 exon 48422782 48423022 48422782 ID=Msa0122080-mRNA-1:exon:14630;Parent=Msa0122080-mRNA-1
chr1_3 exon 48423044 48423175 48423044 ID=Msa0122080-mRNA-1:exon:14629;Parent=Msa0122080-mRNA-1
chr1_3 exon 48423191 48423354 48423191 ID=Msa0122080-mRNA-1:exon:14628;Parent=Msa0122080-mRNA-1
chr1_3 exon 48423479 48423554 48423479 ID=Msa0122080-mRNA-1:exon:14627;Parent=Msa0122080-mRNA-1
chr1_3 exon 48423681 48423784 48423681 ID=Msa0122080-mRNA-1:exon:14626;Parent=Msa0122080-mRNA-1
chr1_3 exon 48423892 48424045 48423892 ID=Msa0122080-mRNA-1:exon:14625;Parent=Msa0122080-mRNA-1
chr1_3 exon 48424055 48424224 48424055 ID=Msa0122080-mRNA-1:exon:14624;Parent=Msa0122080-mRNA-1
chr1_3 exon 48424340 48424487 48424340 ID=Msa0122080-mRNA-1:exon:14623;Parent=Msa0122080-mRNA-1
chr1_3 exon 48424605 48424749 48424605 ID=Msa0122080-mRNA-1:exon:14622;Parent=Msa0122080-mRNA-1
chr1_3 exon 48425179 48425461 48425179 ID=Msa0122080-mRNA-1:exon:14621;Parent=Msa0122080-mRNA-1
chr1_3 five_prime_UTR 48425337 48425461 48425337 ID=Msa0122080-mRNA-1:five_prime_utr;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48425179 48425336 48425179 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48424605 48424749 48424605 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48424340 48424487 48424340 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48424055 48424224 48424055 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48423892 48424045 48423892 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48423681 48423784 48423681 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48423479 48423554 48423479 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48423191 48423354 48423191 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48423044 48423175 48423044 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48422782 48423022 48422782 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48422490 48422548 48422490 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48422334 48422407 48422334 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 CDS 48421026 48421029 48421026 ID=Msa0122080-mRNA-1:cds;Parent=Msa0122080-mRNA-1
chr1_3 three_prime_UTR 48420629 48421025 48420629 ID=Msa0122080-mRNA-1:three_prime_utr;Parent=Msa0122080-mRNA-1
Gene Sequence

>Msa0122080

ATGGCTGATTTCACTCCCAGTTCTTCTAATTGCACCCCCACACCTTCTTCTTCTTCTTCTTGCTTCCAACGAACGGTTACATTATACGATTGGTGGCTCGTTAAATCATCTCAAGGAAACAACCACCGTTTAGCCATCTCCGGCGTCTCTTCCACAAAGGAAGAAGCGCTTCGGGTGTTTAATTCCGCTCCTATTATCAAAAGATATGATGAGGTTTCCCTTGAGACTGTCGATGGTATATATGTTTTGATTAGGGGTTTCATTAATAAACAGTGCACACTGGATAATGGTTTTACTCCCCAGATTTTCAAGAGTTTTTTATTTGGCTTTTCTGAAAACTGGGAAAGCTCTTTTCTAGCGTGCGTTAGAGAACAACCAGAAACCGGTACTGATTCGGGCAATGCTGTTTTGGATAATGAATTTGCATTTTATCAAGGAACTTTCTCTGACGGTGAGGAAAAGTCCATTCCTACTTCTTCGGTATTGCCTGAAGAGGCCCCAGAGAATTGCAAGACTCCATTCCCCGGAGATGAATGCAAAGTCTCAAAGAAGATGAGTGGGGTTGATATTGCTTGTGGTAGTGGTAAAAATAGACGTAGTACCAGGTTGCATAATATTAAACAAAAGAAGCCGAAGCAGCATCCTACATCGAGAGGTCCTCTCAAGCGTTCAGATGAAGAGCCAAGCTCTACCTCAAAGGCCGTCGAAAATCATGATCCGGATACTGTTGTTCCTGATAATGTACCAGCAAATCTTCCAGAAATATCATTTGATGCTTTGGAAAATTCTGTTCCTACGTCTTTGGTCACGAGAGATTGCAATATGTCGTTCCTTGAAGATGAACAAGATATGTCAATTAAGATGAGTGAGGTCAACGATGTTGTGGAAAATCATGATTTGGATACTGCTGTTCCTGATAATGTATCAACGAATCTTCCAGAAATATTATCTGATGCTGTGGAGAAGTCTTTTCCTACTTCTTTGTTATCACCGGATAAGACCATGGGAGATCGCAATAAGGCACTCCTCAAAGATGAACGGGATATGTCAATTAAGACGGGTAGGGTCAATGTTGTTCATGGTAGTGGCGGGAATAGACGTAGTGCCCGGATGCATAATAAGAAGCAACCTGCTACTGGAGATCCTGCAACACATCCAGATAAAGACCAGATCTCTGCCTCAGCAGCCTTGGAAATGACTGATGGAGGACTGGAAAGTCTATCAACACCCGTTCAATCACAAAAGGGAAGAGTCACTAATAAATTGAGTTCCAGAATTTCCAAAACCTTTTCAGCAAAAACCAAAAGATGTTATAAGAAAAAAAGGGCGACAATTGAAACAGAAGCGGTCACACCTAAGAGAAAAATTATTAAACCTGCATCTTCTGTAAAATCTCCTCAAGGAAGGAATGTAAGTCACTCAAACAAGGGAAGTCAACAGAGATTATCCACAGTTTCTCCAGAGTCATTGAGTCTAAAAAAATCCAGATCTGGAAGGTGGCTTCTACCTCCCTTAGAGTTTTGGCGCAATCAACAACCTATTTATAACATGGACCGTGAGATTACAGAAATTCAGGAAGGTTCATCTTTGATATCACCTTTTAGAGGCTCTTCATCATTGGGCAGGTGA

Protein sequence

>Msa0122080

MADFTPSSSNCTPTPSSSSSCFQRTVTLYDWWLVKSSQGNNHRLAISGVSSTKEEALRVFNSAPIIKRYDEVSLETVDGIYVLIRGFINKQCTLDNGFTPQIFKSFLFGFSENWESSFLACVREQPETGTDSGNAVLDNEFAFYQGTFSDGEEKSIPTSSVLPEEAPENCKTPFPGDECKVSKKMSGVDIACGSGKNRRSTRLHNIKQKKPKQHPTSRGPLKRSDEEPSSTSKAVENHDPDTVVPDNVPANLPEISFDALENSVPTSLVTRDCNMSFLEDEQDMSIKMSEVNDVVENHDLDTAVPDNVSTNLPEILSDAVEKSFPTSLLSPDKTMGDRNKALLKDERDMSIKTGRVNVVHGSGGNRRSARMHNKKQPATGDPATHPDKDQISASAALEMTDGGLESLSTPVQSQKGRVTNKLSSRISKTFSAKTKRCYKKKRATIETEAVTPKRKIIKPASSVKSPQGRNVSHSNKGSQQRLSTVSPESLSLKKSRSGRWLLPPLEFWRNQQPIYNMDREITEIQEGSSLISPFRGSSSLGR*