AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122470 MtrunA17_Chr1g0182621 83.250 597 45 5 1 542 1 597 0.0 954
Msa0122470 MtrunA17_Chr1g0182611 59.885 349 80 4 239 527 131 479 1.22e-121 366
Msa0122470 MtrunA17_Chr1g0182611 60.201 299 114 1 1 294 1 299 4.32e-115 349
Msa0122470 MtrunA17_Chr7g0231611 36.620 142 74 5 1 134 1 134 4.87e-15 76.6
Msa0122470 MtrunA17_Chr5g0416851 36.620 142 74 5 1 134 1 134 5.84e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122470 AT5G02520.2 43.103 116 63 3 18 131 11 125 5.91e-22 100
Msa0122470 AT5G02520.2 45.205 73 39 1 471 542 519 591 7.59e-11 65.1
Msa0122470 AT5G02520.1 43.103 116 63 3 18 131 11 125 6.00e-22 100
Msa0122470 AT5G02520.1 45.205 73 39 1 471 542 518 590 7.91e-11 65.1
Msa0122470 AT5G02520.3 43.103 116 63 3 18 131 11 125 8.68e-22 99.8
Msa0122470 AT1G58210.1 39.130 92 52 1 24 115 64 151 3.53e-15 76.6

Find 139 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGAATCAGTACCGGTTTC+TGG 0.134199 1_3:-49201227 None:intergenic
TTACCATCAGATAATATTTC+TGG 0.175942 1_3:-49202145 None:intergenic
TTACCATCAAATGATATTTC+TGG 0.188236 1_3:-49201732 None:intergenic
AATGGAGTCTTGCAATTCTC+TGG 0.210078 1_3:-49201465 None:intergenic
CAATTCTCTGGGGCCTCTTC+AGG 0.246287 1_3:-49201453 None:intergenic
TTCTACCTCCCTTAGAGTTT+TGG 0.256165 1_3:+49203104 Msa0122470:CDS
GAAGAAATCAAAACAGCTTT+TGG 0.263060 1_3:+49204739 Msa0122470:three_prime_UTR
TCTTTATCTGGATGTGTTGC+AGG 0.273995 1_3:-49202491 None:intergenic
AGATTTGCTGGTACATTATC+AGG 0.278683 1_3:-49201708 None:intergenic
AACTTCTGAATCTGGTGTTT+TGG 0.280867 1_3:+49204616 Msa0122470:exon
ATTGGAAAATTTACCAGATC+TGG 0.281653 1_3:-49202852 None:intergenic
TGATTCGGGCAATGCTGTTT+TGG 0.283336 1_3:+49201241 Msa0122470:CDS
GATATTTCTGGAAGATTTGC+TGG 0.294734 1_3:-49201720 None:intergenic
AAATTCTGTTCCTACGTCTT+TGG 0.304145 1_3:+49201865 Msa0122470:CDS
ATCTCAATGGCCCGTTTATA+AGG 0.306063 1_3:+49204837 Msa0122470:three_prime_UTR
ATTAGGTGAACTTCTGAATC+TGG 0.306686 1_3:+49204608 Msa0122470:intron
TCACATACCATGTTATAAAT+AGG 0.311211 1_3:-49203139 None:intergenic
AGTATTCACTGGTCAACTTT+TGG 0.327826 1_3:+49204707 Msa0122470:three_prime_UTR
ACATATCTTGTTCATCTTCA+AGG 0.335841 1_3:-49201913 None:intergenic
CCGTGAGATTACAGAAATTC+AGG 0.340294 1_3:+49203238 Msa0122470:CDS
TTGATTGCGCCAAAACTCTA+AGG 0.343897 1_3:-49203113 None:intergenic
AGATTCGTTGATACATTATC+AGG 0.360747 1_3:-49202121 None:intergenic
CTTCCAGAAATATCATTTGA+TGG 0.363684 1_3:+49201729 Msa0122470:CDS
GCAGAGATCTGGTCTTTATC+TGG 0.371673 1_3:-49202503 None:intergenic
TGAGACTTTGCATTCATCTC+CGG 0.373003 1_3:-49201490 None:intergenic
ATAGCTGTAAACCTTATAAA+CGG 0.376898 1_3:-49204848 None:intergenic
GGTTGTGGAAAATCATGATT+TGG 0.381883 1_3:+49202087 Msa0122470:intron
CCAGAAACCGGTACTGATTC+GGG 0.383266 1_3:+49201227 Msa0122470:CDS
AATGATGAAGAGCCTCTAAA+AGG 0.383621 1_3:-49203281 None:intergenic
ACCAGAAACCGGTACTGATT+CGG 0.393560 1_3:+49201226 Msa0122470:CDS
ACATATCCCGTTCATCTTTG+AGG 0.399307 1_3:-49202358 None:intergenic
AAACAGTGCACACTGGATAA+TGG 0.412705 1_3:+49201002 Msa0122470:CDS
GTTGATATTGCTTGTGGTAG+TGG 0.415196 1_3:+49201528 Msa0122470:CDS
AGGATTTAACATTATGCATC+CGG 0.417454 1_3:-49202439 None:intergenic
ATGGAGTCTTGCAATTCTCT+GGG 0.433444 1_3:-49201464 None:intergenic
TCCTACTTCTTTGTTATCAC+CGG 0.437184 1_3:+49202304 Msa0122470:CDS
ATTCAGGGAAGAAGCGCTTC+GGG 0.439330 1_3:+49200887 Msa0122470:intron
AAAGTCCATTCCTACTTCTT+CGG 0.439348 1_3:+49201425 Msa0122470:CDS
TTTAGAGGCTCTTCATCATT+GGG 0.442092 1_3:+49203284 Msa0122470:CDS
GATCTCTGCCTCAGCAGCCT+TGG 0.442994 1_3:+49202517 Msa0122470:CDS
GACCATGGGAGATCGCAATA+AGG 0.444355 1_3:+49202331 Msa0122470:CDS
GATTCAGGGAAGAAGCGCTT+CGG 0.444377 1_3:+49200886 Msa0122470:intron
CAGAAGAAGCAACCTGCTAC+TGG 0.444849 1_3:+49202464 Msa0122470:intron
GGCACTCCTCAAAGATGAAC+GGG 0.449784 1_3:+49202352 Msa0122470:CDS
AACTCGTACATGGAGGAGAT+TGG 0.450451 1_3:-49204959 None:intergenic
AACACCCGTTCAATCACAAA+AGG 0.455345 1_3:+49202571 Msa0122470:CDS
GTCAATGTTGTTCATGGTAG+TGG 0.459300 1_3:+49202398 Msa0122470:CDS
GAGACTTTGCATTCATCTCC+GGG 0.467675 1_3:-49201489 None:intergenic
CGATCTCCCATGGTCTTATC+CGG 0.467896 1_3:-49202323 None:intergenic
GGTAGGGTCAATGTTGTTCA+TGG 0.469284 1_3:+49202392 Msa0122470:CDS
TTGCATTCATCTCCGGGGAA+TGG 0.473283 1_3:-49201483 None:intergenic
TAGCTGTAAACCTTATAAAC+GGG 0.474870 1_3:-49204847 None:intergenic
ACGGCCTTTGAGGTAGAGCT+TGG 0.476441 1_3:-49201657 None:intergenic
GAACGGTTACATTATACGAT+TGG 0.482529 1_3:+49200377 Msa0122470:CDS
CTCGATGTAGGATGCTGCTT+CGG 0.487404 1_3:-49201606 None:intergenic
AGGCTGCTGAGGCAGAGATC+TGG 0.487795 1_3:-49202514 None:intergenic
GTGTGAATGAATGCGATGTT+TGG 0.488330 1_3:-49200283 None:intergenic
TTATCAGGAACAACAGTATC+CGG 0.501961 1_3:-49201693 None:intergenic
TTCTTCTTGCTTCCAACGAA+CGG 0.503942 1_3:+49200360 Msa0122470:CDS
GGCCGTCGAAAATCATGATC+CGG 0.505332 1_3:+49201674 Msa0122470:CDS
ACTTACATAACACAACAATT+CGG 0.521806 1_3:+49204658 Msa0122470:three_prime_UTR
GAGGCTCTTCATCATTGGGC+AGG 0.522623 1_3:+49203288 Msa0122470:CDS
TGCCTTATTGCGATCTCCCA+TGG 0.525598 1_3:-49202333 None:intergenic
CGTATAATGTAACCGTTCGT+TGG 0.528108 1_3:-49200372 None:intergenic
AACTCGTTCAAAGTATTCAC+TGG 0.532753 1_3:+49204696 Msa0122470:three_prime_UTR
AGCATTGCCCGAATCAGTAC+CGG 0.533197 1_3:-49201234 None:intergenic
GTTAGAGAACAACCAGAAAC+CGG 0.534072 1_3:+49201215 Msa0122470:CDS
CTAATACATCAACTCGTACA+TGG 0.534739 1_3:-49204969 None:intergenic
CGGTTACATTATACGATTGG+TGG 0.540059 1_3:+49200380 Msa0122470:CDS
GGAAATGACTGATGGAGGAC+TGG 0.545081 1_3:+49202538 Msa0122470:CDS
GACTTTAATATTATGCAACC+TGG 0.548218 1_3:-49201568 None:intergenic
TATCAAGGAACTTTCTCTGA+CGG 0.548904 1_3:+49201281 Msa0122470:CDS
AGACGCCGGAGATGGCTAAA+CGG 0.549320 1_3:-49200432 None:intergenic
TCAGGCAATACCGAAGAAGT+AGG 0.549862 1_3:-49201435 None:intergenic
GTTGAAGAGAAATAAGTCAG+AGG 0.551672 1_3:-49200261 None:intergenic
CCTGAATTTCTGTAATCTCA+CGG 0.553835 1_3:-49203238 None:intergenic
TCAAATTAAGAGGATCTCAA+TGG 0.553847 1_3:+49204824 Msa0122470:three_prime_UTR
AAGTCTCAAAGAAGATGAGT+GGG 0.555389 1_3:+49201505 Msa0122470:CDS
AACCACCGTTTAGCCATCTC+CGG 0.558688 1_3:+49200427 Msa0122470:CDS
GTTGCAGGATCTCCAGTAGC+AGG 0.559749 1_3:-49202476 None:intergenic
GCAGCCTTGGAAATGACTGA+TGG 0.560856 1_3:+49202530 Msa0122470:CDS
TGTGGAAGAGACGCCGGAGA+TGG 0.563212 1_3:-49200440 None:intergenic
GCGGGAATAGACGTAGTGCC+CGG 0.565247 1_3:+49202420 Msa0122470:CDS
TCCGGTGATAACAAAGAAGT+AGG 0.566020 1_3:-49202305 None:intergenic
TTGAGAGGACCTCTCGATGT+AGG 0.566402 1_3:-49201618 None:intergenic
CGGGATATGTCAATTAAGAC+GGG 0.568225 1_3:+49202371 Msa0122470:CDS
ACGGGATATGTCAATTAAGA+CGG 0.571346 1_3:+49202370 Msa0122470:CDS
AGAAGAAGAAGAAGGTGTGG+GGG 0.572575 1_3:-49200341 None:intergenic
ATATGTCAATTAAGACGGGT+AGG 0.573298 1_3:+49202375 Msa0122470:CDS
AATTGCAAGACTCCATTCCC+CGG 0.573734 1_3:+49201471 Msa0122470:CDS
CTGTAAAATCTCCTCAAGGA+AGG 0.576048 1_3:+49202753 Msa0122470:CDS
TCTTCATCTGAACGCTTGAG+AGG 0.576282 1_3:-49201633 None:intergenic
AGTGGGGTTGATATTGCTTG+TGG 0.577027 1_3:+49201522 Msa0122470:CDS
TTCTTCGGTATTGCCTGAAG+AGG 0.578425 1_3:+49201440 Msa0122470:CDS
GAATGTAAGTCACTCAAACA+AGG 0.580926 1_3:+49202775 Msa0122470:CDS
TGACTTACATTCCTTCCTTG+AGG 0.581463 1_3:-49202764 None:intergenic
AATGTCTTGATCAAATTAAG+AGG 0.585332 1_3:+49204814 Msa0122470:three_prime_UTR
GGATTTAACATTATGCATCC+GGG 0.586374 1_3:-49202438 None:intergenic
ATGTTGTTCATGGTAGTGGC+GGG 0.588592 1_3:+49202402 Msa0122470:CDS
AGTCATTTCCAAGGCTGCTG+AGG 0.594162 1_3:-49202525 None:intergenic
CTTCCAGAAATATTATCTGA+TGG 0.594536 1_3:+49202142 Msa0122470:CDS
CATTAATAAACAGTGCACAC+TGG 0.598333 1_3:+49200995 Msa0122470:CDS
ACACCCGTTCAATCACAAAA+GGG 0.599424 1_3:+49202572 Msa0122470:CDS
AGAGAAATAAGTCAGAGGAG+AGG 0.599649 1_3:-49200256 None:intergenic
CAATACCGAAGAAGTAGGAA+TGG 0.601021 1_3:-49201430 None:intergenic
TCCTCCATCAGTCATTTCCA+AGG 0.602323 1_3:-49202534 None:intergenic
AGGCACTCCTCAAAGATGAA+CGG 0.602783 1_3:+49202351 Msa0122470:CDS
AATGTTGTTCATGGTAGTGG+CGG 0.603017 1_3:+49202401 Msa0122470:CDS
TGATTGCGCCAAAACTCTAA+GGG 0.604798 1_3:-49203112 None:intergenic
GTTATCACCGGATAAGACCA+TGG 0.605592 1_3:+49202316 Msa0122470:CDS
AATGTAAGTCACTCAAACAA+GGG 0.606573 1_3:+49202776 Msa0122470:CDS
GCCTTGGAAATGACTGATGG+AGG 0.606817 1_3:+49202533 Msa0122470:CDS
GTTTCCCTTGAGACTGTCGA+TGG 0.607459 1_3:+49200948 Msa0122470:CDS
ATATACCATCGACAGTCTCA+AGG 0.611734 1_3:-49200953 None:intergenic
AGAGCCAAGCTCTACCTCAA+AGG 0.621891 1_3:+49201653 Msa0122470:CDS
AAAGTCTCAAAGAAGATGAG+TGG 0.624361 1_3:+49201504 Msa0122470:CDS
TATGTCAATTAAGACGGGTA+GGG 0.624553 1_3:+49202376 Msa0122470:CDS
TTATCACCGGATAAGACCAT+GGG 0.624895 1_3:+49202317 Msa0122470:CDS
TTACTTTGTGGAAGAGACGC+CGG 0.624985 1_3:-49200446 None:intergenic
TATTATCAAAAGATATGATG+AGG 0.626070 1_3:+49200926 Msa0122470:CDS
TCTTCTGTAAAATCTCCTCA+AGG 0.626237 1_3:+49202749 Msa0122470:CDS
TATACCATCGACAGTCTCAA+GGG 0.636705 1_3:-49200952 None:intergenic
CAATGACTCTGGAGAAACTG+TGG 0.637102 1_3:-49202816 None:intergenic
TGGCTCGTTAAATCATCTCA+AGG 0.637214 1_3:+49200400 Msa0122470:CDS
TCAACAACCTATTTATAACA+TGG 0.640146 1_3:+49203132 Msa0122470:CDS
GAGATTACAGAAATTCAGGA+AGG 0.641599 1_3:+49203242 Msa0122470:CDS
GGCGACAATTGAAACAGAAG+CGG 0.644820 1_3:+49202694 Msa0122470:CDS
TGGAGTCTTGCAATTCTCTG+GGG 0.655923 1_3:-49201463 None:intergenic
CATCGCATTCATTCACACAA+TGG 0.658461 1_3:+49200288 Msa0122470:exon
ACTTCACTTACATGTACATG+TGG 0.661658 1_3:+49204791 Msa0122470:three_prime_UTR
AAGCAGCATCCTACATCGAG+AGG 0.662773 1_3:+49201609 Msa0122470:CDS
TATGTCAATTAAGATGAGTG+AGG 0.667369 1_3:+49201931 Msa0122470:CDS
CGCCGGAGATGGCTAAACGG+TGG 0.689679 1_3:-49200429 None:intergenic
AGACTTTGCATTCATCTCCG+GGG 0.700085 1_3:-49201488 None:intergenic
TTGCGCCAAAACTCTAAGGG+AGG 0.703796 1_3:-49203109 None:intergenic
GGGGTGCAATTAGAAGAACT+GGG 0.727442 1_3:-49200322 None:intergenic
AGTCTCAAAGAAGATGAGTG+GGG 0.750570 1_3:+49201506 Msa0122470:CDS
TCTCTCGTGACCAAAGACGT+AGG 0.753414 1_3:-49201875 None:intergenic
ATACATCAACTCGTACATGG+AGG 0.753862 1_3:-49204966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAAAAAAAAAATCTAA+AGG - chr1_3:49203525-49203544 None:intergenic 10.0%
!! TGGAAAAATAAATAAATTAA+GGG - chr1_3:49204292-49204311 None:intergenic 10.0%
!! TTGGAAAAATAAATAAATTA+AGG - chr1_3:49204293-49204312 None:intergenic 10.0%
!!! ATAGTTTTTGTTAATTTCAT+CGG + chr1_3:49200650-49200669 Msa0122470:intron 15.0%
!!! ATTTTCAAGAGTTTTTTATT+TGG + chr1_3:49201155-49201174 Msa0122470:CDS 15.0%
!!! TTTTTTCTTATAACATCTTT+TGG - chr1_3:49202672-49202691 None:intergenic 15.0%
!! AAAGATGTTATAAGAAAAAA+AGG + chr1_3:49202672-49202691 Msa0122470:CDS 15.0%
!! AAGATGTTATAAGAAAAAAA+GGG + chr1_3:49202673-49202692 Msa0122470:CDS 15.0%
!! GTAAAAAAAAAAACAATGAT+TGG - chr1_3:49202873-49202892 None:intergenic 15.0%
!!! TTTCTTTATGTTATTTTTGA+AGG + chr1_3:49203487-49203506 Msa0122470:intron 15.0%
!!! AATAGATGATCTTATAATTT+TGG + chr1_3:49203658-49203677 Msa0122470:intron 15.0%
!!! TTTTTTTTTCTTAGATGAAG+TGG + chr1_3:49200195-49200214 Msa0122470:five_prime_UTR 20.0%
!!! TTTTTTTTCTTAGATGAAGT+GGG + chr1_3:49200196-49200215 Msa0122470:five_prime_UTR 20.0%
!! GTTAACACTAAACTATAAAT+TGG + chr1_3:49200711-49200730 Msa0122470:intron 20.0%
!! AAATATAAAAACAGTTACTG+TGG + chr1_3:49200822-49200841 Msa0122470:intron 20.0%
!!! TCATCATATCTTTTGATAAT+AGG - chr1_3:49200927-49200946 None:intergenic 20.0%
!! TATTATCAAAAGATATGATG+AGG + chr1_3:49200926-49200945 Msa0122470:CDS 20.0%
!!! ATGGTATATATGTTTTGATT+AGG + chr1_3:49200967-49200986 Msa0122470:CDS 20.0%
!!! TGGTATATATGTTTTGATTA+GGG + chr1_3:49200968-49200987 Msa0122470:CDS 20.0%
!! AAAAAAACAAAAATCCATCA+GGG - chr1_3:49201117-49201136 None:intergenic 20.0%
!!! TGTTTTTTTCTTCTATTTCA+TGG + chr1_3:49201128-49201147 Msa0122470:intron 20.0%
!!! AATGAATTTGCATTTTATCA+AGG + chr1_3:49201266-49201285 Msa0122470:CDS 20.0%
!!! GTTTTATTAATTTTTGTAGC+AGG + chr1_3:49201396-49201415 Msa0122470:intron 20.0%
!! TATTAAGATATAGAAACTGT+AGG - chr1_3:49202250-49202269 None:intergenic 20.0%
!!! GGTTTAATAATTTTTCTCTT+AGG - chr1_3:49202725-49202744 None:intergenic 20.0%
!! GAGTGTATATATTATCAATT+AGG - chr1_3:49202942-49202961 None:intergenic 20.0%
!! TTTACTCTATTCTTTATGTT+TGG + chr1_3:49203060-49203079 Msa0122470:intron 20.0%
!! TTACTCTATTCTTTATGTTT+GGG + chr1_3:49203061-49203080 Msa0122470:intron 20.0%
!!! GAGAATTTTTTAAGTTAGTT+GGG - chr1_3:49203408-49203427 None:intergenic 20.0%
!!! TGAGAATTTTTTAAGTTAGT+TGG - chr1_3:49203409-49203428 None:intergenic 20.0%
!! AAAAAAAAATCTAAAGGAAC+TGG - chr1_3:49203519-49203538 None:intergenic 20.0%
!! CTATTCCAAAGATTAAATAA+TGG - chr1_3:49203643-49203662 None:intergenic 20.0%
!!! TATAATTTTGGAATGATACT+TGG + chr1_3:49203670-49203689 Msa0122470:intron 20.0%
!!! CAGATTAGATAAATGTATTT+TGG + chr1_3:49204087-49204106 Msa0122470:intron 20.0%
!! GACAGAAAAATAAATCAAAT+TGG - chr1_3:49204446-49204465 None:intergenic 20.0%
!!! ATGATTCGTTGTTTTTTATT+AGG + chr1_3:49204591-49204610 Msa0122470:intron 20.0%
! TTCTGATTCAACAAGATTAT+TGG - chr1_3:49200536-49200555 None:intergenic 25.0%
! AATCTTGTTGAATCAGAAAT+TGG + chr1_3:49200538-49200557 Msa0122470:intron 25.0%
!!! ACTATTAAGTATTGAAAGTC+AGG - chr1_3:49200635-49200654 None:intergenic 25.0%
!!! ATCGGTTTTGAATTTATGTT+TGG + chr1_3:49200668-49200687 Msa0122470:intron 25.0%
! ACATTTAATGTTGTGATTCA+GGG + chr1_3:49200872-49200891 Msa0122470:intron 25.0%
!!! ATATCTTTTGATAATAGGAG+CGG - chr1_3:49200922-49200941 None:intergenic 25.0%
!!! GGTATATATGTTTTGATTAG+GGG + chr1_3:49200969-49200988 Msa0122470:CDS 25.0%
!! TTCATAAGTGTCAATGTTTT+TGG + chr1_3:49201045-49201064 Msa0122470:intron 25.0%
!! TTGCAAGATATTGTTGATAA+TGG + chr1_3:49201077-49201096 Msa0122470:intron 25.0%
! AAAAAACAAAAATCCATCAG+GGG - chr1_3:49201116-49201135 None:intergenic 25.0%
! GAAAAAAACAAAAATCCATC+AGG - chr1_3:49201118-49201137 None:intergenic 25.0%
! TTACCATCAAATGATATTTC+TGG - chr1_3:49201735-49201754 None:intergenic 25.0%
! TTACCATCAGATAATATTTC+TGG - chr1_3:49202148-49202167 None:intergenic 25.0%
! CTTCATGAATAAACAATGAT+TGG - chr1_3:49202904-49202923 None:intergenic 25.0%
! AAAAATGCTAACAATAGCAT+TGG - chr1_3:49203012-49203031 None:intergenic 25.0%
!! ATTGTTAGCATTTTTGTACA+TGG + chr1_3:49203017-49203036 Msa0122470:intron 25.0%
!!! TTATGTTTGGGTTATTTTGT+AGG + chr1_3:49203073-49203092 Msa0122470:intron 25.0%
! TCAACAACCTATTTATAACA+TGG + chr1_3:49203132-49203151 Msa0122470:CDS 25.0%
! TCACATACCATGTTATAAAT+AGG - chr1_3:49203142-49203161 None:intergenic 25.0%
! AGAAACATTCTAAATAAGCT+GGG - chr1_3:49203472-49203491 None:intergenic 25.0%
! AAGAAACATTCTAAATAAGC+TGG - chr1_3:49203473-49203492 None:intergenic 25.0%
!! TTTGTTATGGTTATTGCTAT+TGG + chr1_3:49203554-49203573 Msa0122470:intron 25.0%
! TGGTAATAGTAATTGTTTAC+TGG + chr1_3:49203574-49203593 Msa0122470:intron 25.0%
! GGTAATAGTAATTGTTTACT+GGG + chr1_3:49203575-49203594 Msa0122470:intron 25.0%
! GACAATTACTATTCTAACAT+TGG - chr1_3:49203834-49203853 None:intergenic 25.0%
!! TAATTAACTGGCTTCAATAT+TGG + chr1_3:49203909-49203928 Msa0122470:intron 25.0%
!!! AATAACGACTGATTTTTGAT+GGG - chr1_3:49204131-49204150 None:intergenic 25.0%
! AAAACAAAGACAGATGAAAT+TGG - chr1_3:49204156-49204175 None:intergenic 25.0%
! GTTTGAATATACTCAAAGAA+AGG - chr1_3:49204419-49204438 None:intergenic 25.0%
! AAAAATAAATCAAATTGGCG+TGG - chr1_3:49204441-49204460 None:intergenic 25.0%
!!! CTTTGAACTGTTTTTTAACT+TGG + chr1_3:49204502-49204521 Msa0122470:intron 25.0%
! ACTTACATAACACAACAATT+CGG + chr1_3:49204658-49204677 Msa0122470:three_prime_UTR 25.0%
! AATGTCTTGATCAAATTAAG+AGG + chr1_3:49204814-49204833 Msa0122470:three_prime_UTR 25.0%
! ATAGCTGTAAACCTTATAAA+CGG - chr1_3:49204851-49204870 None:intergenic 25.0%
GTTACTTGAGTTAATCGTAT+AGG + chr1_3:49200562-49200581 Msa0122470:intron 30.0%
!! AAGTATTGAAAGTCAGGTTT+GGG - chr1_3:49200629-49200648 None:intergenic 30.0%
!! TAAGTATTGAAAGTCAGGTT+TGG - chr1_3:49200630-49200649 None:intergenic 30.0%
CACATTTAATGTTGTGATTC+AGG + chr1_3:49200871-49200890 Msa0122470:intron 30.0%
ACACTTATGAATACAAACCT+GGG - chr1_3:49201036-49201055 None:intergenic 30.0%
!!! ATAAGTGTCAATGTTTTTGG+TGG + chr1_3:49201048-49201067 Msa0122470:intron 30.0%
!!! TATTTGGCTTTTCTGAAAAC+TGG + chr1_3:49201171-49201190 Msa0122470:CDS 30.0%
!!! ATTTGGCTTTTCTGAAAACT+GGG + chr1_3:49201172-49201191 Msa0122470:CDS 30.0%
GACGGTAAATATTTCGATAA+TGG + chr1_3:49201299-49201318 Msa0122470:intron 30.0%
! ATTAATTTTTGTAGCAGGTG+AGG + chr1_3:49201401-49201420 Msa0122470:intron 30.0%
GACTTTAATATTATGCAACC+TGG - chr1_3:49201571-49201590 None:intergenic 30.0%
CTTCCAGAAATATCATTTGA+TGG + chr1_3:49201729-49201748 Msa0122470:CDS 30.0%
TACTAAGATATAGAGACTGT+AGG - chr1_3:49201820-49201839 None:intergenic 30.0%
ACATATCTTGTTCATCTTCA+AGG - chr1_3:49201916-49201935 None:intergenic 30.0%
TATGTCAATTAAGATGAGTG+AGG + chr1_3:49201931-49201950 Msa0122470:CDS 30.0%
AGATTCGTTGATACATTATC+AGG - chr1_3:49202124-49202143 None:intergenic 30.0%
CTTCCAGAAATATTATCTGA+TGG + chr1_3:49202142-49202161 Msa0122470:CDS 30.0%
GATATAGAAACTGTAGGTAT+AGG - chr1_3:49202244-49202263 None:intergenic 30.0%
AGGATTTAACATTATGCATC+CGG - chr1_3:49202442-49202461 None:intergenic 30.0%
!!! TGAAAAGGTTTTGGAAATTC+TGG - chr1_3:49202642-49202661 None:intergenic 30.0%
!!! TCTTTTGGTTTTTGCTGAAA+AGG - chr1_3:49202657-49202676 None:intergenic 30.0%
AATGTAAGTCACTCAAACAA+GGG + chr1_3:49202776-49202795 Msa0122470:CDS 30.0%
!!! TTTTTTAGACTCAATGACTC+TGG - chr1_3:49202830-49202849 None:intergenic 30.0%
AGTCTAAAAAAATCCAGATC+TGG + chr1_3:49202839-49202858 Msa0122470:CDS 30.0%
ATTGGAAAATTTACCAGATC+TGG - chr1_3:49202855-49202874 None:intergenic 30.0%
TAGATTGTAAATCTTCCAGT+AGG - chr1_3:49203177-49203196 None:intergenic 30.0%
! TCTTTGATATCACCTTTTAG+AGG + chr1_3:49203269-49203288 Msa0122470:CDS 30.0%
GAAACATTCTAAATAAGCTG+GGG - chr1_3:49203471-49203490 None:intergenic 30.0%
!! CTATTTGATCAGCTTTGTTA+TGG + chr1_3:49203541-49203560 Msa0122470:intron 30.0%
! CAAAGATTAAATAATGGAGC+CGG - chr1_3:49203637-49203656 None:intergenic 30.0%
TACAAGTACAACAGCAAAAT+CGG - chr1_3:49203719-49203738 None:intergenic 30.0%
!!! AGTTGTATTTTGAAACATGC+CGG + chr1_3:49203781-49203800 Msa0122470:intron 30.0%
! TATGCGAGTTTTGCAATATA+TGG + chr1_3:49203885-49203904 Msa0122470:intron 30.0%
! ATGCGAGTTTTGCAATATAT+GGG + chr1_3:49203886-49203905 Msa0122470:intron 30.0%
GCAATATATGGGTAATTAAC+TGG + chr1_3:49203897-49203916 Msa0122470:intron 30.0%
!! CAATAACGACTGATTTTTGA+TGG - chr1_3:49204132-49204151 None:intergenic 30.0%
!!! CTTTTCACATTGTTTCTATG+TGG + chr1_3:49204176-49204195 Msa0122470:intron 30.0%
!! ACATTGTTTCTATGTGGTTT+CGG + chr1_3:49204182-49204201 Msa0122470:intron 30.0%
! ATTTGAAGTGTAACTCTGTA+AGG - chr1_3:49204247-49204266 None:intergenic 30.0%
TTACAGAGTTACACTTCAAA+TGG + chr1_3:49204246-49204265 Msa0122470:intron 30.0%
GGGTTAACAAAAATAAAGAC+AGG - chr1_3:49204272-49204291 None:intergenic 30.0%
ATTGTAATATCAGTGATAGC+AGG - chr1_3:49204324-49204343 None:intergenic 30.0%
ATATACTCAAAGAAAGGTGA+TGG - chr1_3:49204413-49204432 None:intergenic 30.0%
! GAAGAAATCAAAACAGCTTT+TGG + chr1_3:49204739-49204758 Msa0122470:three_prime_UTR 30.0%
TCAAATTAAGAGGATCTCAA+TGG + chr1_3:49204824-49204843 Msa0122470:three_prime_UTR 30.0%
TAGCTGTAAACCTTATAAAC+GGG - chr1_3:49204850-49204869 None:intergenic 30.0%
GTTGAAGAGAAATAAGTCAG+AGG - chr1_3:49200264-49200283 None:intergenic 35.0%
AAGCAAGAAGAAGAAGAAGA+AGG - chr1_3:49200352-49200371 None:intergenic 35.0%
GAACGGTTACATTATACGAT+TGG + chr1_3:49200377-49200396 Msa0122470:CDS 35.0%
TGACGAGAATACTTACTTTG+TGG - chr1_3:49200461-49200480 None:intergenic 35.0%
!! AGGCATTTAACTTGCTTTAC+TGG + chr1_3:49200582-49200601 Msa0122470:intron 35.0%
! TCAAGCTAATGCAAAAGCAT+AGG + chr1_3:49200756-49200775 Msa0122470:intron 35.0%
CATTAATAAACAGTGCACAC+TGG + chr1_3:49200995-49201014 Msa0122470:CDS 35.0%
CACTTATGAATACAAACCTG+GGG - chr1_3:49201035-49201054 None:intergenic 35.0%
GACACTTATGAATACAAACC+TGG - chr1_3:49201037-49201056 None:intergenic 35.0%
TATCAAGGAACTTTCTCTGA+CGG + chr1_3:49201281-49201300 Msa0122470:CDS 35.0%
AAAGTCCATTCCTACTTCTT+CGG + chr1_3:49201425-49201444 Msa0122470:CDS 35.0%
AAAGTCTCAAAGAAGATGAG+TGG + chr1_3:49201504-49201523 Msa0122470:CDS 35.0%
AAGTCTCAAAGAAGATGAGT+GGG + chr1_3:49201505-49201524 Msa0122470:CDS 35.0%
GTAAAAATAGACGTAGTACC+AGG + chr1_3:49201550-49201569 Msa0122470:CDS 35.0%
TTATCAGGAACAACAGTATC+CGG - chr1_3:49201696-49201715 None:intergenic 35.0%
!! AGATTTGCTGGTACATTATC+AGG - chr1_3:49201711-49201730 None:intergenic 35.0%
!! GATATTTCTGGAAGATTTGC+TGG - chr1_3:49201723-49201742 None:intergenic 35.0%
GATATAGAGACTGTAGGTAT+AGG - chr1_3:49201814-49201833 None:intergenic 35.0%
TTTAATTGTTGTCGCAGCTT+TGG + chr1_3:49201841-49201860 Msa0122470:intron 35.0%
AAATTCTGTTCCTACGTCTT+TGG + chr1_3:49201865-49201884 Msa0122470:CDS 35.0%
! ATGATTTTCCACAACCTTCA+AGG - chr1_3:49202083-49202102 None:intergenic 35.0%
GGTTGTGGAAAATCATGATT+TGG + chr1_3:49202087-49202106 Msa0122470:intron 35.0%
! TCCTACTTCTTTGTTATCAC+CGG + chr1_3:49202304-49202323 Msa0122470:CDS 35.0%
ACGGGATATGTCAATTAAGA+CGG + chr1_3:49202370-49202389 Msa0122470:CDS 35.0%
ATATGTCAATTAAGACGGGT+AGG + chr1_3:49202375-49202394 Msa0122470:CDS 35.0%
TATGTCAATTAAGACGGGTA+GGG + chr1_3:49202376-49202395 Msa0122470:CDS 35.0%
GGATTTAACATTATGCATCC+GGG - chr1_3:49202441-49202460 None:intergenic 35.0%
! TCTTCCCTTTTGTGATTGAA+CGG - chr1_3:49202579-49202598 None:intergenic 35.0%
GAAGAGTAAACACAATGTCT+GGG + chr1_3:49202594-49202613 Msa0122470:intron 35.0%
! GGTTTTTGCTGAAAAGGTTT+TGG - chr1_3:49202651-49202670 None:intergenic 35.0%
TCTTCTGTAAAATCTCCTCA+AGG + chr1_3:49202749-49202768 Msa0122470:CDS 35.0%
GAATGTAAGTCACTCAAACA+AGG + chr1_3:49202775-49202794 Msa0122470:CDS 35.0%
!! GTTTGGGTTATTTTGTAGGA+AGG + chr1_3:49203077-49203096 Msa0122470:intron 35.0%
TGATATCTTCAACAACCTAC+TGG + chr1_3:49203159-49203178 Msa0122470:intron 35.0%
! CTTTTTACATTTTACCGTCC+AGG + chr1_3:49203214-49203233 Msa0122470:intron 35.0%
CCTGAATTTCTGTAATCTCA+CGG - chr1_3:49203241-49203260 None:intergenic 35.0%
GAGATTACAGAAATTCAGGA+AGG + chr1_3:49203242-49203261 Msa0122470:CDS 35.0%
AATGATGAAGAGCCTCTAAA+AGG - chr1_3:49203284-49203303 None:intergenic 35.0%
!! TTTTAGAGGCTCTTCATCAT+TGG + chr1_3:49203283-49203302 Msa0122470:CDS 35.0%
TTTAGAGGCTCTTCATCATT+GGG + chr1_3:49203284-49203303 Msa0122470:CDS 35.0%
AGAGATACTTACGCAAAACA+AGG - chr1_3:49203384-49203403 None:intergenic 35.0%
TTCTCACTAATACCTAACTG+AGG + chr1_3:49203423-49203442 Msa0122470:intron 35.0%
ACTAATACCTAACTGAGGTT+CGG + chr1_3:49203428-49203447 Msa0122470:intron 35.0%
TTACTGGGAAATGTTTAAGC+TGG + chr1_3:49203590-49203609 Msa0122470:intron 35.0%
CGGCTCCATTATTTAATCTT+TGG + chr1_3:49203635-49203654 Msa0122470:intron 35.0%
ACAAGTACAACAGCAAAATC+GGG - chr1_3:49203718-49203737 None:intergenic 35.0%
TTGTACTTGTAGTCTTCAGT+GGG + chr1_3:49203728-49203747 Msa0122470:intron 35.0%
TCTAACATTGGATTTGCATC+TGG - chr1_3:49203822-49203841 None:intergenic 35.0%
AACAATTCAGTGCCTTAATG+TGG + chr1_3:49203964-49203983 Msa0122470:intron 35.0%
ACAATTCAGTGCCTTAATGT+GGG + chr1_3:49203965-49203984 Msa0122470:intron 35.0%
GAATAATTAGTGATGCCGTT+CGG + chr1_3:49204007-49204026 Msa0122470:intron 35.0%
TTTATCTAATCTGCTGACAG+TGG - chr1_3:49204080-49204099 None:intergenic 35.0%
! ACTTGGCTATGAAGTTTGTT+TGG + chr1_3:49204519-49204538 Msa0122470:intron 35.0%
ATTAGGTGAACTTCTGAATC+TGG + chr1_3:49204608-49204627 Msa0122470:intron 35.0%
! AACTTCTGAATCTGGTGTTT+TGG + chr1_3:49204616-49204635 Msa0122470:exon 35.0%
!! TGAATCTGGTGTTTTGGATA+TGG + chr1_3:49204622-49204641 Msa0122470:three_prime_UTR 35.0%
!! TGGTGTTTTGGATATGGTTT+GGG + chr1_3:49204628-49204647 Msa0122470:three_prime_UTR 35.0%
! AACTCGTTCAAAGTATTCAC+TGG + chr1_3:49204696-49204715 Msa0122470:three_prime_UTR 35.0%
! AGTATTCACTGGTCAACTTT+TGG + chr1_3:49204707-49204726 Msa0122470:three_prime_UTR 35.0%
!! TTTTGGTTGTTAGTGTAGTC+TGG + chr1_3:49204756-49204775 Msa0122470:three_prime_UTR 35.0%
ACTTCACTTACATGTACATG+TGG + chr1_3:49204791-49204810 Msa0122470:three_prime_UTR 35.0%
CTAATACATCAACTCGTACA+TGG - chr1_3:49204972-49204991 None:intergenic 35.0%
AGAGAAATAAGTCAGAGGAG+AGG - chr1_3:49200259-49200278 None:intergenic 40.0%
GTGTGAATGAATGCGATGTT+TGG - chr1_3:49200286-49200305 None:intergenic 40.0%
CATCGCATTCATTCACACAA+TGG + chr1_3:49200288-49200307 Msa0122470:exon 40.0%
! AAGAAGAAGAAGAAGGTGTG+GGG - chr1_3:49200345-49200364 None:intergenic 40.0%
! GAAGAAGAAGAAGAAGGTGT+GGG - chr1_3:49200346-49200365 None:intergenic 40.0%
AGAAGAAGAAGAAGAAGGTG+TGG - chr1_3:49200347-49200366 None:intergenic 40.0%
TTCTTCTTGCTTCCAACGAA+CGG + chr1_3:49200360-49200379 Msa0122470:CDS 40.0%
CGTATAATGTAACCGTTCGT+TGG - chr1_3:49200375-49200394 None:intergenic 40.0%
CGGTTACATTATACGATTGG+TGG + chr1_3:49200380-49200399 Msa0122470:CDS 40.0%
TGGCTCGTTAAATCATCTCA+AGG + chr1_3:49200400-49200419 Msa0122470:CDS 40.0%
AGTAGAACAAAGAAGCAAGC+AGG - chr1_3:49200506-49200525 None:intergenic 40.0%
GCTTTACTGGAAAGAATGTC+AGG + chr1_3:49200595-49200614 Msa0122470:intron 40.0%
TATACCATCGACAGTCTCAA+GGG - chr1_3:49200955-49200974 None:intergenic 40.0%
ATATACCATCGACAGTCTCA+AGG - chr1_3:49200956-49200975 None:intergenic 40.0%
AAACAGTGCACACTGGATAA+TGG + chr1_3:49201002-49201021 Msa0122470:CDS 40.0%
GTTAGAGAACAACCAGAAAC+CGG + chr1_3:49201215-49201234 Msa0122470:CDS 40.0%
CAATACCGAAGAAGTAGGAA+TGG - chr1_3:49201433-49201452 None:intergenic 40.0%
ATGGAGTCTTGCAATTCTCT+GGG - chr1_3:49201467-49201486 None:intergenic 40.0%
AATGGAGTCTTGCAATTCTC+TGG - chr1_3:49201468-49201487 None:intergenic 40.0%
TGAGACTTTGCATTCATCTC+CGG - chr1_3:49201493-49201512 None:intergenic 40.0%
AGTCTCAAAGAAGATGAGTG+GGG + chr1_3:49201506-49201525 Msa0122470:CDS 40.0%
GTTGATATTGCTTGTGGTAG+TGG + chr1_3:49201528-49201547 Msa0122470:CDS 40.0%
! ATCCGGATCATGATTTTCGA+CGG - chr1_3:49201679-49201698 None:intergenic 40.0%
AGTCCTTAGTACTATGCAAC+CGG - chr1_3:49201997-49202016 None:intergenic 40.0%
TCTTTCTCTGGATTCTTGAG+AGG - chr1_3:49202049-49202068 None:intergenic 40.0%
TCCGGTGATAACAAAGAAGT+AGG - chr1_3:49202308-49202327 None:intergenic 40.0%
TTATCACCGGATAAGACCAT+GGG + chr1_3:49202317-49202336 Msa0122470:CDS 40.0%
ACATATCCCGTTCATCTTTG+AGG - chr1_3:49202361-49202380 None:intergenic 40.0%
CGGGATATGTCAATTAAGAC+GGG + chr1_3:49202371-49202390 Msa0122470:CDS 40.0%
GTCAATGTTGTTCATGGTAG+TGG + chr1_3:49202398-49202417 Msa0122470:CDS 40.0%
!! AATGTTGTTCATGGTAGTGG+CGG + chr1_3:49202401-49202420 Msa0122470:CDS 40.0%
TCTTTATCTGGATGTGTTGC+AGG - chr1_3:49202494-49202513 None:intergenic 40.0%
AACACCCGTTCAATCACAAA+AGG + chr1_3:49202571-49202590 Msa0122470:CDS 40.0%
ACACCCGTTCAATCACAAAA+GGG + chr1_3:49202572-49202591 Msa0122470:CDS 40.0%
! CTTCCCTTTTGTGATTGAAC+GGG - chr1_3:49202578-49202597 None:intergenic 40.0%
GGAAGAGTAAACACAATGTC+TGG + chr1_3:49202593-49202612 Msa0122470:intron 40.0%
! GGAGATTTTACAGAAGATGC+AGG - chr1_3:49202746-49202765 None:intergenic 40.0%
CTGTAAAATCTCCTCAAGGA+AGG + chr1_3:49202753-49202772 Msa0122470:CDS 40.0%
TGACTTACATTCCTTCCTTG+AGG - chr1_3:49202767-49202786 None:intergenic 40.0%
!! TGGGTTATTTTGTAGGAAGG+TGG + chr1_3:49203080-49203099 Msa0122470:intron 40.0%
! TTCTACCTCCCTTAGAGTTT+TGG + chr1_3:49203104-49203123 Msa0122470:CDS 40.0%
TGATTGCGCCAAAACTCTAA+GGG - chr1_3:49203115-49203134 None:intergenic 40.0%
TTGATTGCGCCAAAACTCTA+AGG - chr1_3:49203116-49203135 None:intergenic 40.0%
CCGTGAGATTACAGAAATTC+AGG + chr1_3:49203238-49203257 Msa0122470:CDS 40.0%
! GATTAAATAATGGAGCCGGT+GGG - chr1_3:49203633-49203652 None:intergenic 40.0%
! AGATTAAATAATGGAGCCGG+TGG - chr1_3:49203634-49203653 None:intergenic 40.0%
TCGGGACGATAATTCAAGAT+AGG - chr1_3:49203700-49203719 None:intergenic 40.0%
GTTGTACTTGTAGTCTTCAG+TGG + chr1_3:49203727-49203746 Msa0122470:intron 40.0%
CTGGTAATATAAGCATGAGC+CGG - chr1_3:49203803-49203822 None:intergenic 40.0%
!! ATTGGCTTGTCACAAATCTC+CGG + chr1_3:49203927-49203946 Msa0122470:intron 40.0%
! GCACGATTTTACCCACATTA+AGG - chr1_3:49203979-49203998 None:intergenic 40.0%
GATTCAAAAGGAGGAGAAAC+AGG - chr1_3:49204058-49204077 None:intergenic 40.0%
GGTTTCGGAAACTCAATCAT+AGG + chr1_3:49204197-49204216 Msa0122470:intron 40.0%
ATCAGTGATAGCAGGACATA+TGG - chr1_3:49204316-49204335 None:intergenic 40.0%
! TGGCTATGAAGTTTGTTTGG+TGG + chr1_3:49204522-49204541 Msa0122470:intron 40.0%
ATGCTTCATAGCAACGAAGT+TGG + chr1_3:49204560-49204579 Msa0122470:intron 40.0%
!! CTGGTGTTTTGGATATGGTT+TGG + chr1_3:49204627-49204646 Msa0122470:three_prime_UTR 40.0%
!! GGTGTTTTGGATATGGTTTG+GGG + chr1_3:49204629-49204648 Msa0122470:three_prime_UTR 40.0%
ATCTCAATGGCCCGTTTATA+AGG + chr1_3:49204837-49204856 Msa0122470:three_prime_UTR 40.0%
ATACATCAACTCGTACATGG+AGG - chr1_3:49204969-49204988 None:intergenic 40.0%
GGGGTGCAATTAGAAGAACT+GGG - chr1_3:49200325-49200344 None:intergenic 45.0%
! AGAAGAAGAAGAAGGTGTGG+GGG - chr1_3:49200344-49200363 None:intergenic 45.0%
TTACTTTGTGGAAGAGACGC+CGG - chr1_3:49200449-49200468 None:intergenic 45.0%
GAACAAAGAAGCAAGCAGGT+GGG - chr1_3:49200502-49200521 None:intergenic 45.0%
AGAACAAAGAAGCAAGCAGG+TGG - chr1_3:49200503-49200522 None:intergenic 45.0%
!! GGATAATGGTTTTACTCCCC+AGG + chr1_3:49201016-49201035 Msa0122470:CDS 45.0%
TGTTTCATTGCTACCCCTGA+TGG + chr1_3:49201100-49201119 Msa0122470:intron 45.0%
!! ACCAGAAACCGGTACTGATT+CGG + chr1_3:49201226-49201245 Msa0122470:CDS 45.0%
!! TGATTCGGGCAATGCTGTTT+TGG + chr1_3:49201241-49201260 Msa0122470:CDS 45.0%
TCAGGCAATACCGAAGAAGT+AGG - chr1_3:49201438-49201457 None:intergenic 45.0%
TTCTTCGGTATTGCCTGAAG+AGG + chr1_3:49201440-49201459 Msa0122470:CDS 45.0%
TGGAGTCTTGCAATTCTCTG+GGG - chr1_3:49201466-49201485 None:intergenic 45.0%
AATTGCAAGACTCCATTCCC+CGG + chr1_3:49201471-49201490 Msa0122470:CDS 45.0%
AGACTTTGCATTCATCTCCG+GGG - chr1_3:49201491-49201510 None:intergenic 45.0%
GAGACTTTGCATTCATCTCC+GGG - chr1_3:49201492-49201511 None:intergenic 45.0%
!! AGTGGGGTTGATATTGCTTG+TGG + chr1_3:49201522-49201541 Msa0122470:CDS 45.0%
TCTTCATCTGAACGCTTGAG+AGG - chr1_3:49201636-49201655 None:intergenic 45.0%
! ATGATTTTCGACGGCCTTTG+AGG - chr1_3:49201670-49201689 None:intergenic 45.0%
AGTGAGGTCAACGATGTTCA+TGG + chr1_3:49201947-49201966 Msa0122470:intron 45.0%
TTGAGAGGATCTCCATATGC+AGG - chr1_3:49202034-49202053 None:intergenic 45.0%
TTCAAATGTTGTCGCAGCTG+TGG + chr1_3:49202271-49202290 Msa0122470:intron 45.0%
GTTATCACCGGATAAGACCA+TGG + chr1_3:49202316-49202335 Msa0122470:CDS 45.0%
AGGCACTCCTCAAAGATGAA+CGG + chr1_3:49202351-49202370 Msa0122470:CDS 45.0%
GGTAGGGTCAATGTTGTTCA+TGG + chr1_3:49202392-49202411 Msa0122470:CDS 45.0%
!! ATGTTGTTCATGGTAGTGGC+GGG + chr1_3:49202402-49202421 Msa0122470:CDS 45.0%
! GCAGAGATCTGGTCTTTATC+TGG - chr1_3:49202506-49202525 None:intergenic 45.0%
TCCTCCATCAGTCATTTCCA+AGG - chr1_3:49202537-49202556 None:intergenic 45.0%
AGTAAACACAATGTCTGGGC+AGG + chr1_3:49202598-49202617 Msa0122470:intron 45.0%
GGCGACAATTGAAACAGAAG+CGG + chr1_3:49202694-49202713 Msa0122470:CDS 45.0%
! CAATGACTCTGGAGAAACTG+TGG - chr1_3:49202819-49202838 None:intergenic 45.0%
!! TAGCATTGGCTGAGAAGTGT+TGG - chr1_3:49202998-49203017 None:intergenic 45.0%
TTTCTGTAATCTCACGGTCC+TGG - chr1_3:49203235-49203254 None:intergenic 45.0%
CTAACTGAGGTTCGGAAGAA+GGG + chr1_3:49203436-49203455 Msa0122470:intron 45.0%
AACGTAGAACTCTAACCCAC+CGG + chr1_3:49203615-49203634 Msa0122470:intron 45.0%
CTTATGCGTCTCATACCGAA+CGG - chr1_3:49204025-49204044 None:intergenic 45.0%
AAAAGGAGGAGAAACAGGCT+TGG - chr1_3:49204053-49204072 None:intergenic 45.0%
! CTGACAGTGGATTCAAAAGG+AGG - chr1_3:49204067-49204086 None:intergenic 45.0%
! CTGCTGACAGTGGATTCAAA+AGG - chr1_3:49204070-49204089 None:intergenic 45.0%
GTGATAGCAGGACATATGGT+TGG - chr1_3:49204312-49204331 None:intergenic 45.0%
AACTCGTACATGGAGGAGAT+TGG - chr1_3:49204962-49204981 None:intergenic 45.0%
TCTCTCTCTCTCACGCTGTA+CGG - chr1_3:49200230-49200249 None:intergenic 50.0%
! GGGGGTGCAATTAGAAGAAC+TGG - chr1_3:49200326-49200345 None:intergenic 50.0%
AACCACCGTTTAGCCATCTC+CGG + chr1_3:49200427-49200446 Msa0122470:CDS 50.0%
!! GATTCAGGGAAGAAGCGCTT+CGG + chr1_3:49200886-49200905 Msa0122470:intron 50.0%
!! ATTCAGGGAAGAAGCGCTTC+GGG + chr1_3:49200887-49200906 Msa0122470:intron 50.0%
GTTTCCCTTGAGACTGTCGA+TGG + chr1_3:49200948-49200967 Msa0122470:CDS 50.0%
!! CCAGAAACCGGTACTGATTC+GGG + chr1_3:49201227-49201246 Msa0122470:CDS 50.0%
AGCATTGCCCGAATCAGTAC+CGG - chr1_3:49201237-49201256 None:intergenic 50.0%
TTGCATTCATCTCCGGGGAA+TGG - chr1_3:49201486-49201505 None:intergenic 50.0%
! CTCGATGTAGGATGCTGCTT+CGG - chr1_3:49201609-49201628 None:intergenic 50.0%
AAGCAGCATCCTACATCGAG+AGG + chr1_3:49201609-49201628 Msa0122470:CDS 50.0%
TTGAGAGGACCTCTCGATGT+AGG - chr1_3:49201621-49201640 None:intergenic 50.0%
AGAGCCAAGCTCTACCTCAA+AGG + chr1_3:49201653-49201672 Msa0122470:CDS 50.0%
GGCCGTCGAAAATCATGATC+CGG + chr1_3:49201674-49201693 Msa0122470:CDS 50.0%
TCTCTCGTGACCAAAGACGT+AGG - chr1_3:49201878-49201897 None:intergenic 50.0%
GTCAACGATGTTCATGGCAG+TGG + chr1_3:49201953-49201972 Msa0122470:intron 50.0%
TGGCCGGTTGCATAGTACTA+AGG + chr1_3:49201991-49202010 Msa0122470:intron 50.0%
CATATGCAGGCTGCTTCTTC+TGG - chr1_3:49202021-49202040 None:intergenic 50.0%
CAGAAGAAGCAGCCTGCATA+TGG + chr1_3:49202019-49202038 Msa0122470:intron 50.0%
GTAGAGCTCTGCTCTTTCTC+TGG - chr1_3:49202061-49202080 None:intergenic 50.0%
AGAGCAGAGCTCTACCTTGA+AGG + chr1_3:49202066-49202085 Msa0122470:intron 50.0%
GAGCTCTACCTTGAAGGTTG+TGG + chr1_3:49202072-49202091 Msa0122470:intron 50.0%
!! CGATCTCCCATGGTCTTATC+CGG - chr1_3:49202326-49202345 None:intergenic 50.0%
GACCATGGGAGATCGCAATA+AGG + chr1_3:49202331-49202350 Msa0122470:CDS 50.0%
! TGCCTTATTGCGATCTCCCA+TGG - chr1_3:49202336-49202355 None:intergenic 50.0%
GGCACTCCTCAAAGATGAAC+GGG + chr1_3:49202352-49202371 Msa0122470:CDS 50.0%
AGCAGGTTGCTTCTTCTGGT+AGG - chr1_3:49202462-49202481 None:intergenic 50.0%
CAGTAGCAGGTTGCTTCTTC+TGG - chr1_3:49202466-49202485 None:intergenic 50.0%
CAGAAGAAGCAACCTGCTAC+TGG + chr1_3:49202464-49202483 Msa0122470:intron 50.0%
AGTCATTTCCAAGGCTGCTG+AGG - chr1_3:49202528-49202547 None:intergenic 50.0%
GCAGCCTTGGAAATGACTGA+TGG + chr1_3:49202530-49202549 Msa0122470:CDS 50.0%
GCCTTGGAAATGACTGATGG+AGG + chr1_3:49202533-49202552 Msa0122470:CDS 50.0%
GGAAATGACTGATGGAGGAC+TGG + chr1_3:49202538-49202557 Msa0122470:CDS 50.0%
! TTGCGCCAAAACTCTAAGGG+AGG - chr1_3:49203112-49203131 None:intergenic 50.0%
TGTAATCTCACGGTCCTGGA+CGG - chr1_3:49203231-49203250 None:intergenic 50.0%
CCTTCTTCCGAACCTCAGTT+AGG - chr1_3:49203438-49203457 None:intergenic 50.0%
CCTAACTGAGGTTCGGAAGA+AGG + chr1_3:49203435-49203454 Msa0122470:intron 50.0%
TGAGGTTCGGAAGAAGGGTA+GGG + chr1_3:49203441-49203460 Msa0122470:intron 50.0%
! TTGTTTTCCTCTCCAAGCGC+CGG - chr1_3:49203949-49203968 None:intergenic 50.0%
AGACGCCGGAGATGGCTAAA+CGG - chr1_3:49200435-49200454 None:intergenic 55.0%
!! CCCGAATCAGTACCGGTTTC+TGG - chr1_3:49201230-49201249 None:intergenic 55.0%
!! CAATTCTCTGGGGCCTCTTC+AGG - chr1_3:49201456-49201475 None:intergenic 55.0%
!! ACGGCCTTTGAGGTAGAGCT+TGG - chr1_3:49201660-49201679 None:intergenic 55.0%
ACGATGTTCATGGCAGTGGC+CGG + chr1_3:49201957-49201976 Msa0122470:intron 55.0%
GTTGCAGGATCTCCAGTAGC+AGG - chr1_3:49202479-49202498 None:intergenic 55.0%
GAGGCTCTTCATCATTGGGC+AGG + chr1_3:49203288-49203307 Msa0122470:CDS 55.0%
CTGAGGTTCGGAAGAAGGGT+AGG + chr1_3:49203440-49203459 Msa0122470:intron 55.0%
TGTCACAAATCTCCGGCGCT+TGG + chr1_3:49203934-49203953 Msa0122470:intron 55.0%
TGTGGAAGAGACGCCGGAGA+TGG - chr1_3:49200443-49200462 None:intergenic 60.0%
! AGTGGCCGGACTAGACGTAG+TGG + chr1_3:49201971-49201990 Msa0122470:intron 60.0%
ACCGGCCACTACGTCTAGTC+CGG - chr1_3:49201979-49201998 None:intergenic 60.0%
GCGGGAATAGACGTAGTGCC+CGG + chr1_3:49202420-49202439 Msa0122470:CDS 60.0%
AGGCTGCTGAGGCAGAGATC+TGG - chr1_3:49202517-49202536 None:intergenic 60.0%
GATCTCTGCCTCAGCAGCCT+TGG + chr1_3:49202517-49202536 Msa0122470:CDS 60.0%
CAAATCTCCGGCGCTTGGAG+AGG + chr1_3:49203939-49203958 Msa0122470:intron 60.0%
CGCCGGAGATGGCTAAACGG+TGG - chr1_3:49200432-49200451 None:intergenic 65.0%
! GCCGGACTAGACGTAGTGGC+CGG + chr1_3:49201975-49201994 Msa0122470:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49200183 49205013 49200183 ID=Msa0122470;Name=Msa0122470
chr1_3 mRNA 49200183 49205013 49200183 ID=Msa0122470-mRNA-1;Parent=Msa0122470;Name=Msa0122470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=124|0.66|0.46|1|0.58|0.38|13|397|542
chr1_3 exon 49200183 49200464 49200183 ID=Msa0122470-mRNA-1:exon:14873;Parent=Msa0122470-mRNA-1
chr1_3 exon 49200893 49201037 49200893 ID=Msa0122470-mRNA-1:exon:14874;Parent=Msa0122470-mRNA-1
chr1_3 exon 49201155 49201302 49201155 ID=Msa0122470-mRNA-1:exon:14875;Parent=Msa0122470-mRNA-1
chr1_3 exon 49201418 49201587 49201418 ID=Msa0122470-mRNA-1:exon:14876;Parent=Msa0122470-mRNA-1
chr1_3 exon 49201597 49201750 49201597 ID=Msa0122470-mRNA-1:exon:14877;Parent=Msa0122470-mRNA-1
chr1_3 exon 49201858 49201961 49201858 ID=Msa0122470-mRNA-1:exon:14878;Parent=Msa0122470-mRNA-1
chr1_3 exon 49202088 49202163 49202088 ID=Msa0122470-mRNA-1:exon:14879;Parent=Msa0122470-mRNA-1
chr1_3 exon 49202288 49202451 49202288 ID=Msa0122470-mRNA-1:exon:14880;Parent=Msa0122470-mRNA-1
chr1_3 exon 49202467 49202598 49202467 ID=Msa0122470-mRNA-1:exon:14881;Parent=Msa0122470-mRNA-1
chr1_3 exon 49202620 49202860 49202620 ID=Msa0122470-mRNA-1:exon:14882;Parent=Msa0122470-mRNA-1
chr1_3 exon 49203095 49203153 49203095 ID=Msa0122470-mRNA-1:exon:14883;Parent=Msa0122470-mRNA-1
chr1_3 exon 49203236 49203309 49203236 ID=Msa0122470-mRNA-1:exon:14884;Parent=Msa0122470-mRNA-1
chr1_3 exon 49204613 49205013 49204613 ID=Msa0122470-mRNA-1:exon:14885;Parent=Msa0122470-mRNA-1
chr1_3 five_prime_UTR 49200183 49200306 49200183 ID=Msa0122470-mRNA-1:five_prime_utr;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49200307 49200464 49200307 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49200893 49201037 49200893 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49201155 49201302 49201155 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49201418 49201587 49201418 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49201597 49201750 49201597 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49201858 49201961 49201858 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49202088 49202163 49202088 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49202288 49202451 49202288 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49202467 49202598 49202467 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49202620 49202860 49202620 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49203095 49203153 49203095 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49203236 49203309 49203236 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 CDS 49204613 49204616 49204613 ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1
chr1_3 three_prime_UTR 49204617 49205013 49204617 ID=Msa0122470-mRNA-1:three_prime_utr;Parent=Msa0122470-mRNA-1
Gene Sequence

>Msa0122470

ATGGCTGATTTCACTCCCAGTTCTTCTAATTGCACCCCCACACCTTCTTCTTCTTCTTCTTGCTTCCAACGAACGGTTACATTATACGATTGGTGGCTCGTTAAATCATCTCAAGGAAACAACCACCGTTTAGCCATCTCCGGCGTCTCTTCCACAAAGGAAGAAGCGCTTCGGGTGTTTAATTCCGCTCCTATTATCAAAAGATATGATGAGGTTTCCCTTGAGACTGTCGATGGTATATATGTTTTGATTAGGGGTTTCATTAATAAACAGTGCACACTGGATAATGGTTTTACTCCCCAGATTTTCAAGAGTTTTTTATTTGGCTTTTCTGAAAACTGGGAAAGCTCTTTTCTAGCGTGCGTTAGAGAACAACCAGAAACCGGTACTGATTCGGGCAATGCTGTTTTGGATAATGAATTTGCATTTTATCAAGGAACTTTCTCTGACGGTGAGGAAAAGTCCATTCCTACTTCTTCGGTATTGCCTGAAGAGGCCCCAGAGAATTGCAAGACTCCATTCCCCGGAGATGAATGCAAAGTCTCAAAGAAGATGAGTGGGGTTGATATTGCTTGTGGTAGTGGTAAAAATAGACGTAGTACCAGGTTGCATAATATTAAACAAAAGAAGCCGAAGCAGCATCCTACATCGAGAGGTCCTCTCAAGCGTTCAGATGAAGAGCCAAGCTCTACCTCAAAGGCCGTCGAAAATCATGATCCGGATACTGTTGTTCCTGATAATGTACCAGCAAATCTTCCAGAAATATCATTTGATGCTTTGGAAAATTCTGTTCCTACGTCTTTGGTCACGAGAGATTGCAATATGTCGTTCCTTGAAGATGAACAAGATATGTCAATTAAGATGAGTGAGGTCAACGATGTTGTGGAAAATCATGATTTGGATACTGCTGTTCCTGATAATGTATCAACGAATCTTCCAGAAATATTATCTGATGCTGTGGAGAAGTCTTTTCCTACTTCTTTGTTATCACCGGATAAGACCATGGGAGATCGCAATAAGGCACTCCTCAAAGATGAACGGGATATGTCAATTAAGACGGGTAGGGTCAATGTTGTTCATGGTAGTGGCGGGAATAGACGTAGTGCCCGGATGCATAATAAGAAGCAACCTGCTACTGGAGATCCTGCAACACATCCAGATAAAGACCAGATCTCTGCCTCAGCAGCCTTGGAAATGACTGATGGAGGACTGGAAAGTCTATCAACACCCGTTCAATCACAAAAGGGAAGAGTCACTAATAAATTGAGTTCCAGAATTTCCAAAACCTTTTCAGCAAAAACCAAAAGATGTTATAAGAAAAAAAGGGCGACAATTGAAACAGAAGCGGTCACACCTAAGAGAAAAATTATTAAACCTGCATCTTCTGTAAAATCTCCTCAAGGAAGGAATGTAAGTCACTCAAACAAGGGAAGTCAACAGAGATTATCCACAGTTTCTCCAGAGTCATTGAGTCTAAAAAAATCCAGATCTGGAAGGTGGCTTCTACCTCCCTTAGAGTTTTGGCGCAATCAACAACCTATTTATAACATGGACCGTGAGATTACAGAAATTCAGGAAGGTTCATCTTTGATATCACCTTTTAGAGGCTCTTCATCATTGGGCAGGTGA

Protein sequence

>Msa0122470

MADFTPSSSNCTPTPSSSSSCFQRTVTLYDWWLVKSSQGNNHRLAISGVSSTKEEALRVFNSAPIIKRYDEVSLETVDGIYVLIRGFINKQCTLDNGFTPQIFKSFLFGFSENWESSFLACVREQPETGTDSGNAVLDNEFAFYQGTFSDGEEKSIPTSSVLPEEAPENCKTPFPGDECKVSKKMSGVDIACGSGKNRRSTRLHNIKQKKPKQHPTSRGPLKRSDEEPSSTSKAVENHDPDTVVPDNVPANLPEISFDALENSVPTSLVTRDCNMSFLEDEQDMSIKMSEVNDVVENHDLDTAVPDNVSTNLPEILSDAVEKSFPTSLLSPDKTMGDRNKALLKDERDMSIKTGRVNVVHGSGGNRRSARMHNKKQPATGDPATHPDKDQISASAALEMTDGGLESLSTPVQSQKGRVTNKLSSRISKTFSAKTKRCYKKKRATIETEAVTPKRKIIKPASSVKSPQGRNVSHSNKGSQQRLSTVSPESLSLKKSRSGRWLLPPLEFWRNQQPIYNMDREITEIQEGSSLISPFRGSSSLGR*