Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122470 | sp|F4KCE9|KNL2_ARATH | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 5.90e-21 | 100 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122470 | A0A072VLC9 | 83.250 | 597 | 45 | 5 | 1 | 542 | 1 | 597 | 0.0 | 954 |
Gene ID | Type | Classification |
---|---|---|
Msa0122470 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0122080 | Msa0122470 | 0.941652 | 2.864029e-101 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122470 | MtrunA17_Chr1g0182621 | 83.250 | 597 | 45 | 5 | 1 | 542 | 1 | 597 | 0.0 | 954 |
Msa0122470 | MtrunA17_Chr1g0182611 | 59.885 | 349 | 80 | 4 | 239 | 527 | 131 | 479 | 1.22e-121 | 366 |
Msa0122470 | MtrunA17_Chr1g0182611 | 60.201 | 299 | 114 | 1 | 1 | 294 | 1 | 299 | 4.32e-115 | 349 |
Msa0122470 | MtrunA17_Chr7g0231611 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 4.87e-15 | 76.6 |
Msa0122470 | MtrunA17_Chr5g0416851 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 5.84e-15 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0122470 | AT5G02520.2 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 5.91e-22 | 100 |
Msa0122470 | AT5G02520.2 | 45.205 | 73 | 39 | 1 | 471 | 542 | 519 | 591 | 7.59e-11 | 65.1 |
Msa0122470 | AT5G02520.1 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 6.00e-22 | 100 |
Msa0122470 | AT5G02520.1 | 45.205 | 73 | 39 | 1 | 471 | 542 | 518 | 590 | 7.91e-11 | 65.1 |
Msa0122470 | AT5G02520.3 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 8.68e-22 | 99.8 |
Msa0122470 | AT1G58210.1 | 39.130 | 92 | 52 | 1 | 24 | 115 | 64 | 151 | 3.53e-15 | 76.6 |
Find 139 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCGAATCAGTACCGGTTTC+TGG | 0.134199 | 1_3:-49201227 | None:intergenic |
TTACCATCAGATAATATTTC+TGG | 0.175942 | 1_3:-49202145 | None:intergenic |
TTACCATCAAATGATATTTC+TGG | 0.188236 | 1_3:-49201732 | None:intergenic |
AATGGAGTCTTGCAATTCTC+TGG | 0.210078 | 1_3:-49201465 | None:intergenic |
CAATTCTCTGGGGCCTCTTC+AGG | 0.246287 | 1_3:-49201453 | None:intergenic |
TTCTACCTCCCTTAGAGTTT+TGG | 0.256165 | 1_3:+49203104 | Msa0122470:CDS |
GAAGAAATCAAAACAGCTTT+TGG | 0.263060 | 1_3:+49204739 | Msa0122470:three_prime_UTR |
TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1_3:-49202491 | None:intergenic |
AGATTTGCTGGTACATTATC+AGG | 0.278683 | 1_3:-49201708 | None:intergenic |
AACTTCTGAATCTGGTGTTT+TGG | 0.280867 | 1_3:+49204616 | Msa0122470:exon |
ATTGGAAAATTTACCAGATC+TGG | 0.281653 | 1_3:-49202852 | None:intergenic |
TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1_3:+49201241 | Msa0122470:CDS |
GATATTTCTGGAAGATTTGC+TGG | 0.294734 | 1_3:-49201720 | None:intergenic |
AAATTCTGTTCCTACGTCTT+TGG | 0.304145 | 1_3:+49201865 | Msa0122470:CDS |
ATCTCAATGGCCCGTTTATA+AGG | 0.306063 | 1_3:+49204837 | Msa0122470:three_prime_UTR |
ATTAGGTGAACTTCTGAATC+TGG | 0.306686 | 1_3:+49204608 | Msa0122470:intron |
TCACATACCATGTTATAAAT+AGG | 0.311211 | 1_3:-49203139 | None:intergenic |
AGTATTCACTGGTCAACTTT+TGG | 0.327826 | 1_3:+49204707 | Msa0122470:three_prime_UTR |
ACATATCTTGTTCATCTTCA+AGG | 0.335841 | 1_3:-49201913 | None:intergenic |
CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1_3:+49203238 | Msa0122470:CDS |
TTGATTGCGCCAAAACTCTA+AGG | 0.343897 | 1_3:-49203113 | None:intergenic |
AGATTCGTTGATACATTATC+AGG | 0.360747 | 1_3:-49202121 | None:intergenic |
CTTCCAGAAATATCATTTGA+TGG | 0.363684 | 1_3:+49201729 | Msa0122470:CDS |
GCAGAGATCTGGTCTTTATC+TGG | 0.371673 | 1_3:-49202503 | None:intergenic |
TGAGACTTTGCATTCATCTC+CGG | 0.373003 | 1_3:-49201490 | None:intergenic |
ATAGCTGTAAACCTTATAAA+CGG | 0.376898 | 1_3:-49204848 | None:intergenic |
GGTTGTGGAAAATCATGATT+TGG | 0.381883 | 1_3:+49202087 | Msa0122470:intron |
CCAGAAACCGGTACTGATTC+GGG | 0.383266 | 1_3:+49201227 | Msa0122470:CDS |
AATGATGAAGAGCCTCTAAA+AGG | 0.383621 | 1_3:-49203281 | None:intergenic |
ACCAGAAACCGGTACTGATT+CGG | 0.393560 | 1_3:+49201226 | Msa0122470:CDS |
ACATATCCCGTTCATCTTTG+AGG | 0.399307 | 1_3:-49202358 | None:intergenic |
AAACAGTGCACACTGGATAA+TGG | 0.412705 | 1_3:+49201002 | Msa0122470:CDS |
GTTGATATTGCTTGTGGTAG+TGG | 0.415196 | 1_3:+49201528 | Msa0122470:CDS |
AGGATTTAACATTATGCATC+CGG | 0.417454 | 1_3:-49202439 | None:intergenic |
ATGGAGTCTTGCAATTCTCT+GGG | 0.433444 | 1_3:-49201464 | None:intergenic |
TCCTACTTCTTTGTTATCAC+CGG | 0.437184 | 1_3:+49202304 | Msa0122470:CDS |
ATTCAGGGAAGAAGCGCTTC+GGG | 0.439330 | 1_3:+49200887 | Msa0122470:intron |
AAAGTCCATTCCTACTTCTT+CGG | 0.439348 | 1_3:+49201425 | Msa0122470:CDS |
TTTAGAGGCTCTTCATCATT+GGG | 0.442092 | 1_3:+49203284 | Msa0122470:CDS |
GATCTCTGCCTCAGCAGCCT+TGG | 0.442994 | 1_3:+49202517 | Msa0122470:CDS |
GACCATGGGAGATCGCAATA+AGG | 0.444355 | 1_3:+49202331 | Msa0122470:CDS |
GATTCAGGGAAGAAGCGCTT+CGG | 0.444377 | 1_3:+49200886 | Msa0122470:intron |
CAGAAGAAGCAACCTGCTAC+TGG | 0.444849 | 1_3:+49202464 | Msa0122470:intron |
GGCACTCCTCAAAGATGAAC+GGG | 0.449784 | 1_3:+49202352 | Msa0122470:CDS |
AACTCGTACATGGAGGAGAT+TGG | 0.450451 | 1_3:-49204959 | None:intergenic |
AACACCCGTTCAATCACAAA+AGG | 0.455345 | 1_3:+49202571 | Msa0122470:CDS |
GTCAATGTTGTTCATGGTAG+TGG | 0.459300 | 1_3:+49202398 | Msa0122470:CDS |
GAGACTTTGCATTCATCTCC+GGG | 0.467675 | 1_3:-49201489 | None:intergenic |
CGATCTCCCATGGTCTTATC+CGG | 0.467896 | 1_3:-49202323 | None:intergenic |
GGTAGGGTCAATGTTGTTCA+TGG | 0.469284 | 1_3:+49202392 | Msa0122470:CDS |
TTGCATTCATCTCCGGGGAA+TGG | 0.473283 | 1_3:-49201483 | None:intergenic |
TAGCTGTAAACCTTATAAAC+GGG | 0.474870 | 1_3:-49204847 | None:intergenic |
ACGGCCTTTGAGGTAGAGCT+TGG | 0.476441 | 1_3:-49201657 | None:intergenic |
GAACGGTTACATTATACGAT+TGG | 0.482529 | 1_3:+49200377 | Msa0122470:CDS |
CTCGATGTAGGATGCTGCTT+CGG | 0.487404 | 1_3:-49201606 | None:intergenic |
AGGCTGCTGAGGCAGAGATC+TGG | 0.487795 | 1_3:-49202514 | None:intergenic |
GTGTGAATGAATGCGATGTT+TGG | 0.488330 | 1_3:-49200283 | None:intergenic |
TTATCAGGAACAACAGTATC+CGG | 0.501961 | 1_3:-49201693 | None:intergenic |
TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1_3:+49200360 | Msa0122470:CDS |
GGCCGTCGAAAATCATGATC+CGG | 0.505332 | 1_3:+49201674 | Msa0122470:CDS |
ACTTACATAACACAACAATT+CGG | 0.521806 | 1_3:+49204658 | Msa0122470:three_prime_UTR |
GAGGCTCTTCATCATTGGGC+AGG | 0.522623 | 1_3:+49203288 | Msa0122470:CDS |
TGCCTTATTGCGATCTCCCA+TGG | 0.525598 | 1_3:-49202333 | None:intergenic |
CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1_3:-49200372 | None:intergenic |
AACTCGTTCAAAGTATTCAC+TGG | 0.532753 | 1_3:+49204696 | Msa0122470:three_prime_UTR |
AGCATTGCCCGAATCAGTAC+CGG | 0.533197 | 1_3:-49201234 | None:intergenic |
GTTAGAGAACAACCAGAAAC+CGG | 0.534072 | 1_3:+49201215 | Msa0122470:CDS |
CTAATACATCAACTCGTACA+TGG | 0.534739 | 1_3:-49204969 | None:intergenic |
CGGTTACATTATACGATTGG+TGG | 0.540059 | 1_3:+49200380 | Msa0122470:CDS |
GGAAATGACTGATGGAGGAC+TGG | 0.545081 | 1_3:+49202538 | Msa0122470:CDS |
GACTTTAATATTATGCAACC+TGG | 0.548218 | 1_3:-49201568 | None:intergenic |
TATCAAGGAACTTTCTCTGA+CGG | 0.548904 | 1_3:+49201281 | Msa0122470:CDS |
AGACGCCGGAGATGGCTAAA+CGG | 0.549320 | 1_3:-49200432 | None:intergenic |
TCAGGCAATACCGAAGAAGT+AGG | 0.549862 | 1_3:-49201435 | None:intergenic |
GTTGAAGAGAAATAAGTCAG+AGG | 0.551672 | 1_3:-49200261 | None:intergenic |
CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1_3:-49203238 | None:intergenic |
TCAAATTAAGAGGATCTCAA+TGG | 0.553847 | 1_3:+49204824 | Msa0122470:three_prime_UTR |
AAGTCTCAAAGAAGATGAGT+GGG | 0.555389 | 1_3:+49201505 | Msa0122470:CDS |
AACCACCGTTTAGCCATCTC+CGG | 0.558688 | 1_3:+49200427 | Msa0122470:CDS |
GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1_3:-49202476 | None:intergenic |
GCAGCCTTGGAAATGACTGA+TGG | 0.560856 | 1_3:+49202530 | Msa0122470:CDS |
TGTGGAAGAGACGCCGGAGA+TGG | 0.563212 | 1_3:-49200440 | None:intergenic |
GCGGGAATAGACGTAGTGCC+CGG | 0.565247 | 1_3:+49202420 | Msa0122470:CDS |
TCCGGTGATAACAAAGAAGT+AGG | 0.566020 | 1_3:-49202305 | None:intergenic |
TTGAGAGGACCTCTCGATGT+AGG | 0.566402 | 1_3:-49201618 | None:intergenic |
CGGGATATGTCAATTAAGAC+GGG | 0.568225 | 1_3:+49202371 | Msa0122470:CDS |
ACGGGATATGTCAATTAAGA+CGG | 0.571346 | 1_3:+49202370 | Msa0122470:CDS |
AGAAGAAGAAGAAGGTGTGG+GGG | 0.572575 | 1_3:-49200341 | None:intergenic |
ATATGTCAATTAAGACGGGT+AGG | 0.573298 | 1_3:+49202375 | Msa0122470:CDS |
AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1_3:+49201471 | Msa0122470:CDS |
CTGTAAAATCTCCTCAAGGA+AGG | 0.576048 | 1_3:+49202753 | Msa0122470:CDS |
TCTTCATCTGAACGCTTGAG+AGG | 0.576282 | 1_3:-49201633 | None:intergenic |
AGTGGGGTTGATATTGCTTG+TGG | 0.577027 | 1_3:+49201522 | Msa0122470:CDS |
TTCTTCGGTATTGCCTGAAG+AGG | 0.578425 | 1_3:+49201440 | Msa0122470:CDS |
GAATGTAAGTCACTCAAACA+AGG | 0.580926 | 1_3:+49202775 | Msa0122470:CDS |
TGACTTACATTCCTTCCTTG+AGG | 0.581463 | 1_3:-49202764 | None:intergenic |
AATGTCTTGATCAAATTAAG+AGG | 0.585332 | 1_3:+49204814 | Msa0122470:three_prime_UTR |
GGATTTAACATTATGCATCC+GGG | 0.586374 | 1_3:-49202438 | None:intergenic |
ATGTTGTTCATGGTAGTGGC+GGG | 0.588592 | 1_3:+49202402 | Msa0122470:CDS |
AGTCATTTCCAAGGCTGCTG+AGG | 0.594162 | 1_3:-49202525 | None:intergenic |
CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1_3:+49202142 | Msa0122470:CDS |
CATTAATAAACAGTGCACAC+TGG | 0.598333 | 1_3:+49200995 | Msa0122470:CDS |
ACACCCGTTCAATCACAAAA+GGG | 0.599424 | 1_3:+49202572 | Msa0122470:CDS |
AGAGAAATAAGTCAGAGGAG+AGG | 0.599649 | 1_3:-49200256 | None:intergenic |
CAATACCGAAGAAGTAGGAA+TGG | 0.601021 | 1_3:-49201430 | None:intergenic |
TCCTCCATCAGTCATTTCCA+AGG | 0.602323 | 1_3:-49202534 | None:intergenic |
AGGCACTCCTCAAAGATGAA+CGG | 0.602783 | 1_3:+49202351 | Msa0122470:CDS |
AATGTTGTTCATGGTAGTGG+CGG | 0.603017 | 1_3:+49202401 | Msa0122470:CDS |
TGATTGCGCCAAAACTCTAA+GGG | 0.604798 | 1_3:-49203112 | None:intergenic |
GTTATCACCGGATAAGACCA+TGG | 0.605592 | 1_3:+49202316 | Msa0122470:CDS |
AATGTAAGTCACTCAAACAA+GGG | 0.606573 | 1_3:+49202776 | Msa0122470:CDS |
GCCTTGGAAATGACTGATGG+AGG | 0.606817 | 1_3:+49202533 | Msa0122470:CDS |
GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1_3:+49200948 | Msa0122470:CDS |
ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1_3:-49200953 | None:intergenic |
AGAGCCAAGCTCTACCTCAA+AGG | 0.621891 | 1_3:+49201653 | Msa0122470:CDS |
AAAGTCTCAAAGAAGATGAG+TGG | 0.624361 | 1_3:+49201504 | Msa0122470:CDS |
TATGTCAATTAAGACGGGTA+GGG | 0.624553 | 1_3:+49202376 | Msa0122470:CDS |
TTATCACCGGATAAGACCAT+GGG | 0.624895 | 1_3:+49202317 | Msa0122470:CDS |
TTACTTTGTGGAAGAGACGC+CGG | 0.624985 | 1_3:-49200446 | None:intergenic |
TATTATCAAAAGATATGATG+AGG | 0.626070 | 1_3:+49200926 | Msa0122470:CDS |
TCTTCTGTAAAATCTCCTCA+AGG | 0.626237 | 1_3:+49202749 | Msa0122470:CDS |
TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1_3:-49200952 | None:intergenic |
CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1_3:-49202816 | None:intergenic |
TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1_3:+49200400 | Msa0122470:CDS |
TCAACAACCTATTTATAACA+TGG | 0.640146 | 1_3:+49203132 | Msa0122470:CDS |
GAGATTACAGAAATTCAGGA+AGG | 0.641599 | 1_3:+49203242 | Msa0122470:CDS |
GGCGACAATTGAAACAGAAG+CGG | 0.644820 | 1_3:+49202694 | Msa0122470:CDS |
TGGAGTCTTGCAATTCTCTG+GGG | 0.655923 | 1_3:-49201463 | None:intergenic |
CATCGCATTCATTCACACAA+TGG | 0.658461 | 1_3:+49200288 | Msa0122470:exon |
ACTTCACTTACATGTACATG+TGG | 0.661658 | 1_3:+49204791 | Msa0122470:three_prime_UTR |
AAGCAGCATCCTACATCGAG+AGG | 0.662773 | 1_3:+49201609 | Msa0122470:CDS |
TATGTCAATTAAGATGAGTG+AGG | 0.667369 | 1_3:+49201931 | Msa0122470:CDS |
CGCCGGAGATGGCTAAACGG+TGG | 0.689679 | 1_3:-49200429 | None:intergenic |
AGACTTTGCATTCATCTCCG+GGG | 0.700085 | 1_3:-49201488 | None:intergenic |
TTGCGCCAAAACTCTAAGGG+AGG | 0.703796 | 1_3:-49203109 | None:intergenic |
GGGGTGCAATTAGAAGAACT+GGG | 0.727442 | 1_3:-49200322 | None:intergenic |
AGTCTCAAAGAAGATGAGTG+GGG | 0.750570 | 1_3:+49201506 | Msa0122470:CDS |
TCTCTCGTGACCAAAGACGT+AGG | 0.753414 | 1_3:-49201875 | None:intergenic |
ATACATCAACTCGTACATGG+AGG | 0.753862 | 1_3:-49204966 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGTAAAAAAAAAATCTAA+AGG | - | chr1_3:49203525-49203544 | None:intergenic | 10.0% |
!! | TGGAAAAATAAATAAATTAA+GGG | - | chr1_3:49204292-49204311 | None:intergenic | 10.0% |
!! | TTGGAAAAATAAATAAATTA+AGG | - | chr1_3:49204293-49204312 | None:intergenic | 10.0% |
!!! | ATAGTTTTTGTTAATTTCAT+CGG | + | chr1_3:49200650-49200669 | Msa0122470:intron | 15.0% |
!!! | ATTTTCAAGAGTTTTTTATT+TGG | + | chr1_3:49201155-49201174 | Msa0122470:CDS | 15.0% |
!!! | TTTTTTCTTATAACATCTTT+TGG | - | chr1_3:49202672-49202691 | None:intergenic | 15.0% |
!! | AAAGATGTTATAAGAAAAAA+AGG | + | chr1_3:49202672-49202691 | Msa0122470:CDS | 15.0% |
!! | AAGATGTTATAAGAAAAAAA+GGG | + | chr1_3:49202673-49202692 | Msa0122470:CDS | 15.0% |
!! | GTAAAAAAAAAAACAATGAT+TGG | - | chr1_3:49202873-49202892 | None:intergenic | 15.0% |
!!! | TTTCTTTATGTTATTTTTGA+AGG | + | chr1_3:49203487-49203506 | Msa0122470:intron | 15.0% |
!!! | AATAGATGATCTTATAATTT+TGG | + | chr1_3:49203658-49203677 | Msa0122470:intron | 15.0% |
!!! | TTTTTTTTTCTTAGATGAAG+TGG | + | chr1_3:49200195-49200214 | Msa0122470:five_prime_UTR | 20.0% |
!!! | TTTTTTTTCTTAGATGAAGT+GGG | + | chr1_3:49200196-49200215 | Msa0122470:five_prime_UTR | 20.0% |
!! | GTTAACACTAAACTATAAAT+TGG | + | chr1_3:49200711-49200730 | Msa0122470:intron | 20.0% |
!! | AAATATAAAAACAGTTACTG+TGG | + | chr1_3:49200822-49200841 | Msa0122470:intron | 20.0% |
!!! | TCATCATATCTTTTGATAAT+AGG | - | chr1_3:49200927-49200946 | None:intergenic | 20.0% |
!! | TATTATCAAAAGATATGATG+AGG | + | chr1_3:49200926-49200945 | Msa0122470:CDS | 20.0% |
!!! | ATGGTATATATGTTTTGATT+AGG | + | chr1_3:49200967-49200986 | Msa0122470:CDS | 20.0% |
!!! | TGGTATATATGTTTTGATTA+GGG | + | chr1_3:49200968-49200987 | Msa0122470:CDS | 20.0% |
!! | AAAAAAACAAAAATCCATCA+GGG | - | chr1_3:49201117-49201136 | None:intergenic | 20.0% |
!!! | TGTTTTTTTCTTCTATTTCA+TGG | + | chr1_3:49201128-49201147 | Msa0122470:intron | 20.0% |
!!! | AATGAATTTGCATTTTATCA+AGG | + | chr1_3:49201266-49201285 | Msa0122470:CDS | 20.0% |
!!! | GTTTTATTAATTTTTGTAGC+AGG | + | chr1_3:49201396-49201415 | Msa0122470:intron | 20.0% |
!! | TATTAAGATATAGAAACTGT+AGG | - | chr1_3:49202250-49202269 | None:intergenic | 20.0% |
!!! | GGTTTAATAATTTTTCTCTT+AGG | - | chr1_3:49202725-49202744 | None:intergenic | 20.0% |
!! | GAGTGTATATATTATCAATT+AGG | - | chr1_3:49202942-49202961 | None:intergenic | 20.0% |
!! | TTTACTCTATTCTTTATGTT+TGG | + | chr1_3:49203060-49203079 | Msa0122470:intron | 20.0% |
!! | TTACTCTATTCTTTATGTTT+GGG | + | chr1_3:49203061-49203080 | Msa0122470:intron | 20.0% |
!!! | GAGAATTTTTTAAGTTAGTT+GGG | - | chr1_3:49203408-49203427 | None:intergenic | 20.0% |
!!! | TGAGAATTTTTTAAGTTAGT+TGG | - | chr1_3:49203409-49203428 | None:intergenic | 20.0% |
!! | AAAAAAAAATCTAAAGGAAC+TGG | - | chr1_3:49203519-49203538 | None:intergenic | 20.0% |
!! | CTATTCCAAAGATTAAATAA+TGG | - | chr1_3:49203643-49203662 | None:intergenic | 20.0% |
!!! | TATAATTTTGGAATGATACT+TGG | + | chr1_3:49203670-49203689 | Msa0122470:intron | 20.0% |
!!! | CAGATTAGATAAATGTATTT+TGG | + | chr1_3:49204087-49204106 | Msa0122470:intron | 20.0% |
!! | GACAGAAAAATAAATCAAAT+TGG | - | chr1_3:49204446-49204465 | None:intergenic | 20.0% |
!!! | ATGATTCGTTGTTTTTTATT+AGG | + | chr1_3:49204591-49204610 | Msa0122470:intron | 20.0% |
! | TTCTGATTCAACAAGATTAT+TGG | - | chr1_3:49200536-49200555 | None:intergenic | 25.0% |
! | AATCTTGTTGAATCAGAAAT+TGG | + | chr1_3:49200538-49200557 | Msa0122470:intron | 25.0% |
!!! | ACTATTAAGTATTGAAAGTC+AGG | - | chr1_3:49200635-49200654 | None:intergenic | 25.0% |
!!! | ATCGGTTTTGAATTTATGTT+TGG | + | chr1_3:49200668-49200687 | Msa0122470:intron | 25.0% |
! | ACATTTAATGTTGTGATTCA+GGG | + | chr1_3:49200872-49200891 | Msa0122470:intron | 25.0% |
!!! | ATATCTTTTGATAATAGGAG+CGG | - | chr1_3:49200922-49200941 | None:intergenic | 25.0% |
!!! | GGTATATATGTTTTGATTAG+GGG | + | chr1_3:49200969-49200988 | Msa0122470:CDS | 25.0% |
!! | TTCATAAGTGTCAATGTTTT+TGG | + | chr1_3:49201045-49201064 | Msa0122470:intron | 25.0% |
!! | TTGCAAGATATTGTTGATAA+TGG | + | chr1_3:49201077-49201096 | Msa0122470:intron | 25.0% |
! | AAAAAACAAAAATCCATCAG+GGG | - | chr1_3:49201116-49201135 | None:intergenic | 25.0% |
! | GAAAAAAACAAAAATCCATC+AGG | - | chr1_3:49201118-49201137 | None:intergenic | 25.0% |
! | TTACCATCAAATGATATTTC+TGG | - | chr1_3:49201735-49201754 | None:intergenic | 25.0% |
! | TTACCATCAGATAATATTTC+TGG | - | chr1_3:49202148-49202167 | None:intergenic | 25.0% |
! | CTTCATGAATAAACAATGAT+TGG | - | chr1_3:49202904-49202923 | None:intergenic | 25.0% |
! | AAAAATGCTAACAATAGCAT+TGG | - | chr1_3:49203012-49203031 | None:intergenic | 25.0% |
!! | ATTGTTAGCATTTTTGTACA+TGG | + | chr1_3:49203017-49203036 | Msa0122470:intron | 25.0% |
!!! | TTATGTTTGGGTTATTTTGT+AGG | + | chr1_3:49203073-49203092 | Msa0122470:intron | 25.0% |
! | TCAACAACCTATTTATAACA+TGG | + | chr1_3:49203132-49203151 | Msa0122470:CDS | 25.0% |
! | TCACATACCATGTTATAAAT+AGG | - | chr1_3:49203142-49203161 | None:intergenic | 25.0% |
! | AGAAACATTCTAAATAAGCT+GGG | - | chr1_3:49203472-49203491 | None:intergenic | 25.0% |
! | AAGAAACATTCTAAATAAGC+TGG | - | chr1_3:49203473-49203492 | None:intergenic | 25.0% |
!! | TTTGTTATGGTTATTGCTAT+TGG | + | chr1_3:49203554-49203573 | Msa0122470:intron | 25.0% |
! | TGGTAATAGTAATTGTTTAC+TGG | + | chr1_3:49203574-49203593 | Msa0122470:intron | 25.0% |
! | GGTAATAGTAATTGTTTACT+GGG | + | chr1_3:49203575-49203594 | Msa0122470:intron | 25.0% |
! | GACAATTACTATTCTAACAT+TGG | - | chr1_3:49203834-49203853 | None:intergenic | 25.0% |
!! | TAATTAACTGGCTTCAATAT+TGG | + | chr1_3:49203909-49203928 | Msa0122470:intron | 25.0% |
!!! | AATAACGACTGATTTTTGAT+GGG | - | chr1_3:49204131-49204150 | None:intergenic | 25.0% |
! | AAAACAAAGACAGATGAAAT+TGG | - | chr1_3:49204156-49204175 | None:intergenic | 25.0% |
! | GTTTGAATATACTCAAAGAA+AGG | - | chr1_3:49204419-49204438 | None:intergenic | 25.0% |
! | AAAAATAAATCAAATTGGCG+TGG | - | chr1_3:49204441-49204460 | None:intergenic | 25.0% |
!!! | CTTTGAACTGTTTTTTAACT+TGG | + | chr1_3:49204502-49204521 | Msa0122470:intron | 25.0% |
! | ACTTACATAACACAACAATT+CGG | + | chr1_3:49204658-49204677 | Msa0122470:three_prime_UTR | 25.0% |
! | AATGTCTTGATCAAATTAAG+AGG | + | chr1_3:49204814-49204833 | Msa0122470:three_prime_UTR | 25.0% |
! | ATAGCTGTAAACCTTATAAA+CGG | - | chr1_3:49204851-49204870 | None:intergenic | 25.0% |
GTTACTTGAGTTAATCGTAT+AGG | + | chr1_3:49200562-49200581 | Msa0122470:intron | 30.0% | |
!! | AAGTATTGAAAGTCAGGTTT+GGG | - | chr1_3:49200629-49200648 | None:intergenic | 30.0% |
!! | TAAGTATTGAAAGTCAGGTT+TGG | - | chr1_3:49200630-49200649 | None:intergenic | 30.0% |
CACATTTAATGTTGTGATTC+AGG | + | chr1_3:49200871-49200890 | Msa0122470:intron | 30.0% | |
ACACTTATGAATACAAACCT+GGG | - | chr1_3:49201036-49201055 | None:intergenic | 30.0% | |
!!! | ATAAGTGTCAATGTTTTTGG+TGG | + | chr1_3:49201048-49201067 | Msa0122470:intron | 30.0% |
!!! | TATTTGGCTTTTCTGAAAAC+TGG | + | chr1_3:49201171-49201190 | Msa0122470:CDS | 30.0% |
!!! | ATTTGGCTTTTCTGAAAACT+GGG | + | chr1_3:49201172-49201191 | Msa0122470:CDS | 30.0% |
GACGGTAAATATTTCGATAA+TGG | + | chr1_3:49201299-49201318 | Msa0122470:intron | 30.0% | |
! | ATTAATTTTTGTAGCAGGTG+AGG | + | chr1_3:49201401-49201420 | Msa0122470:intron | 30.0% |
GACTTTAATATTATGCAACC+TGG | - | chr1_3:49201571-49201590 | None:intergenic | 30.0% | |
CTTCCAGAAATATCATTTGA+TGG | + | chr1_3:49201729-49201748 | Msa0122470:CDS | 30.0% | |
TACTAAGATATAGAGACTGT+AGG | - | chr1_3:49201820-49201839 | None:intergenic | 30.0% | |
ACATATCTTGTTCATCTTCA+AGG | - | chr1_3:49201916-49201935 | None:intergenic | 30.0% | |
TATGTCAATTAAGATGAGTG+AGG | + | chr1_3:49201931-49201950 | Msa0122470:CDS | 30.0% | |
AGATTCGTTGATACATTATC+AGG | - | chr1_3:49202124-49202143 | None:intergenic | 30.0% | |
CTTCCAGAAATATTATCTGA+TGG | + | chr1_3:49202142-49202161 | Msa0122470:CDS | 30.0% | |
GATATAGAAACTGTAGGTAT+AGG | - | chr1_3:49202244-49202263 | None:intergenic | 30.0% | |
AGGATTTAACATTATGCATC+CGG | - | chr1_3:49202442-49202461 | None:intergenic | 30.0% | |
!!! | TGAAAAGGTTTTGGAAATTC+TGG | - | chr1_3:49202642-49202661 | None:intergenic | 30.0% |
!!! | TCTTTTGGTTTTTGCTGAAA+AGG | - | chr1_3:49202657-49202676 | None:intergenic | 30.0% |
AATGTAAGTCACTCAAACAA+GGG | + | chr1_3:49202776-49202795 | Msa0122470:CDS | 30.0% | |
!!! | TTTTTTAGACTCAATGACTC+TGG | - | chr1_3:49202830-49202849 | None:intergenic | 30.0% |
AGTCTAAAAAAATCCAGATC+TGG | + | chr1_3:49202839-49202858 | Msa0122470:CDS | 30.0% | |
ATTGGAAAATTTACCAGATC+TGG | - | chr1_3:49202855-49202874 | None:intergenic | 30.0% | |
TAGATTGTAAATCTTCCAGT+AGG | - | chr1_3:49203177-49203196 | None:intergenic | 30.0% | |
! | TCTTTGATATCACCTTTTAG+AGG | + | chr1_3:49203269-49203288 | Msa0122470:CDS | 30.0% |
GAAACATTCTAAATAAGCTG+GGG | - | chr1_3:49203471-49203490 | None:intergenic | 30.0% | |
!! | CTATTTGATCAGCTTTGTTA+TGG | + | chr1_3:49203541-49203560 | Msa0122470:intron | 30.0% |
! | CAAAGATTAAATAATGGAGC+CGG | - | chr1_3:49203637-49203656 | None:intergenic | 30.0% |
TACAAGTACAACAGCAAAAT+CGG | - | chr1_3:49203719-49203738 | None:intergenic | 30.0% | |
!!! | AGTTGTATTTTGAAACATGC+CGG | + | chr1_3:49203781-49203800 | Msa0122470:intron | 30.0% |
! | TATGCGAGTTTTGCAATATA+TGG | + | chr1_3:49203885-49203904 | Msa0122470:intron | 30.0% |
! | ATGCGAGTTTTGCAATATAT+GGG | + | chr1_3:49203886-49203905 | Msa0122470:intron | 30.0% |
GCAATATATGGGTAATTAAC+TGG | + | chr1_3:49203897-49203916 | Msa0122470:intron | 30.0% | |
!! | CAATAACGACTGATTTTTGA+TGG | - | chr1_3:49204132-49204151 | None:intergenic | 30.0% |
!!! | CTTTTCACATTGTTTCTATG+TGG | + | chr1_3:49204176-49204195 | Msa0122470:intron | 30.0% |
!! | ACATTGTTTCTATGTGGTTT+CGG | + | chr1_3:49204182-49204201 | Msa0122470:intron | 30.0% |
! | ATTTGAAGTGTAACTCTGTA+AGG | - | chr1_3:49204247-49204266 | None:intergenic | 30.0% |
TTACAGAGTTACACTTCAAA+TGG | + | chr1_3:49204246-49204265 | Msa0122470:intron | 30.0% | |
GGGTTAACAAAAATAAAGAC+AGG | - | chr1_3:49204272-49204291 | None:intergenic | 30.0% | |
ATTGTAATATCAGTGATAGC+AGG | - | chr1_3:49204324-49204343 | None:intergenic | 30.0% | |
ATATACTCAAAGAAAGGTGA+TGG | - | chr1_3:49204413-49204432 | None:intergenic | 30.0% | |
! | GAAGAAATCAAAACAGCTTT+TGG | + | chr1_3:49204739-49204758 | Msa0122470:three_prime_UTR | 30.0% |
TCAAATTAAGAGGATCTCAA+TGG | + | chr1_3:49204824-49204843 | Msa0122470:three_prime_UTR | 30.0% | |
TAGCTGTAAACCTTATAAAC+GGG | - | chr1_3:49204850-49204869 | None:intergenic | 30.0% | |
GTTGAAGAGAAATAAGTCAG+AGG | - | chr1_3:49200264-49200283 | None:intergenic | 35.0% | |
AAGCAAGAAGAAGAAGAAGA+AGG | - | chr1_3:49200352-49200371 | None:intergenic | 35.0% | |
GAACGGTTACATTATACGAT+TGG | + | chr1_3:49200377-49200396 | Msa0122470:CDS | 35.0% | |
TGACGAGAATACTTACTTTG+TGG | - | chr1_3:49200461-49200480 | None:intergenic | 35.0% | |
!! | AGGCATTTAACTTGCTTTAC+TGG | + | chr1_3:49200582-49200601 | Msa0122470:intron | 35.0% |
! | TCAAGCTAATGCAAAAGCAT+AGG | + | chr1_3:49200756-49200775 | Msa0122470:intron | 35.0% |
CATTAATAAACAGTGCACAC+TGG | + | chr1_3:49200995-49201014 | Msa0122470:CDS | 35.0% | |
CACTTATGAATACAAACCTG+GGG | - | chr1_3:49201035-49201054 | None:intergenic | 35.0% | |
GACACTTATGAATACAAACC+TGG | - | chr1_3:49201037-49201056 | None:intergenic | 35.0% | |
TATCAAGGAACTTTCTCTGA+CGG | + | chr1_3:49201281-49201300 | Msa0122470:CDS | 35.0% | |
AAAGTCCATTCCTACTTCTT+CGG | + | chr1_3:49201425-49201444 | Msa0122470:CDS | 35.0% | |
AAAGTCTCAAAGAAGATGAG+TGG | + | chr1_3:49201504-49201523 | Msa0122470:CDS | 35.0% | |
AAGTCTCAAAGAAGATGAGT+GGG | + | chr1_3:49201505-49201524 | Msa0122470:CDS | 35.0% | |
GTAAAAATAGACGTAGTACC+AGG | + | chr1_3:49201550-49201569 | Msa0122470:CDS | 35.0% | |
TTATCAGGAACAACAGTATC+CGG | - | chr1_3:49201696-49201715 | None:intergenic | 35.0% | |
!! | AGATTTGCTGGTACATTATC+AGG | - | chr1_3:49201711-49201730 | None:intergenic | 35.0% |
!! | GATATTTCTGGAAGATTTGC+TGG | - | chr1_3:49201723-49201742 | None:intergenic | 35.0% |
GATATAGAGACTGTAGGTAT+AGG | - | chr1_3:49201814-49201833 | None:intergenic | 35.0% | |
TTTAATTGTTGTCGCAGCTT+TGG | + | chr1_3:49201841-49201860 | Msa0122470:intron | 35.0% | |
AAATTCTGTTCCTACGTCTT+TGG | + | chr1_3:49201865-49201884 | Msa0122470:CDS | 35.0% | |
! | ATGATTTTCCACAACCTTCA+AGG | - | chr1_3:49202083-49202102 | None:intergenic | 35.0% |
GGTTGTGGAAAATCATGATT+TGG | + | chr1_3:49202087-49202106 | Msa0122470:intron | 35.0% | |
! | TCCTACTTCTTTGTTATCAC+CGG | + | chr1_3:49202304-49202323 | Msa0122470:CDS | 35.0% |
ACGGGATATGTCAATTAAGA+CGG | + | chr1_3:49202370-49202389 | Msa0122470:CDS | 35.0% | |
ATATGTCAATTAAGACGGGT+AGG | + | chr1_3:49202375-49202394 | Msa0122470:CDS | 35.0% | |
TATGTCAATTAAGACGGGTA+GGG | + | chr1_3:49202376-49202395 | Msa0122470:CDS | 35.0% | |
GGATTTAACATTATGCATCC+GGG | - | chr1_3:49202441-49202460 | None:intergenic | 35.0% | |
! | TCTTCCCTTTTGTGATTGAA+CGG | - | chr1_3:49202579-49202598 | None:intergenic | 35.0% |
GAAGAGTAAACACAATGTCT+GGG | + | chr1_3:49202594-49202613 | Msa0122470:intron | 35.0% | |
! | GGTTTTTGCTGAAAAGGTTT+TGG | - | chr1_3:49202651-49202670 | None:intergenic | 35.0% |
TCTTCTGTAAAATCTCCTCA+AGG | + | chr1_3:49202749-49202768 | Msa0122470:CDS | 35.0% | |
GAATGTAAGTCACTCAAACA+AGG | + | chr1_3:49202775-49202794 | Msa0122470:CDS | 35.0% | |
!! | GTTTGGGTTATTTTGTAGGA+AGG | + | chr1_3:49203077-49203096 | Msa0122470:intron | 35.0% |
TGATATCTTCAACAACCTAC+TGG | + | chr1_3:49203159-49203178 | Msa0122470:intron | 35.0% | |
! | CTTTTTACATTTTACCGTCC+AGG | + | chr1_3:49203214-49203233 | Msa0122470:intron | 35.0% |
CCTGAATTTCTGTAATCTCA+CGG | - | chr1_3:49203241-49203260 | None:intergenic | 35.0% | |
GAGATTACAGAAATTCAGGA+AGG | + | chr1_3:49203242-49203261 | Msa0122470:CDS | 35.0% | |
AATGATGAAGAGCCTCTAAA+AGG | - | chr1_3:49203284-49203303 | None:intergenic | 35.0% | |
!! | TTTTAGAGGCTCTTCATCAT+TGG | + | chr1_3:49203283-49203302 | Msa0122470:CDS | 35.0% |
TTTAGAGGCTCTTCATCATT+GGG | + | chr1_3:49203284-49203303 | Msa0122470:CDS | 35.0% | |
AGAGATACTTACGCAAAACA+AGG | - | chr1_3:49203384-49203403 | None:intergenic | 35.0% | |
TTCTCACTAATACCTAACTG+AGG | + | chr1_3:49203423-49203442 | Msa0122470:intron | 35.0% | |
ACTAATACCTAACTGAGGTT+CGG | + | chr1_3:49203428-49203447 | Msa0122470:intron | 35.0% | |
TTACTGGGAAATGTTTAAGC+TGG | + | chr1_3:49203590-49203609 | Msa0122470:intron | 35.0% | |
CGGCTCCATTATTTAATCTT+TGG | + | chr1_3:49203635-49203654 | Msa0122470:intron | 35.0% | |
ACAAGTACAACAGCAAAATC+GGG | - | chr1_3:49203718-49203737 | None:intergenic | 35.0% | |
TTGTACTTGTAGTCTTCAGT+GGG | + | chr1_3:49203728-49203747 | Msa0122470:intron | 35.0% | |
TCTAACATTGGATTTGCATC+TGG | - | chr1_3:49203822-49203841 | None:intergenic | 35.0% | |
AACAATTCAGTGCCTTAATG+TGG | + | chr1_3:49203964-49203983 | Msa0122470:intron | 35.0% | |
ACAATTCAGTGCCTTAATGT+GGG | + | chr1_3:49203965-49203984 | Msa0122470:intron | 35.0% | |
GAATAATTAGTGATGCCGTT+CGG | + | chr1_3:49204007-49204026 | Msa0122470:intron | 35.0% | |
TTTATCTAATCTGCTGACAG+TGG | - | chr1_3:49204080-49204099 | None:intergenic | 35.0% | |
! | ACTTGGCTATGAAGTTTGTT+TGG | + | chr1_3:49204519-49204538 | Msa0122470:intron | 35.0% |
ATTAGGTGAACTTCTGAATC+TGG | + | chr1_3:49204608-49204627 | Msa0122470:intron | 35.0% | |
! | AACTTCTGAATCTGGTGTTT+TGG | + | chr1_3:49204616-49204635 | Msa0122470:exon | 35.0% |
!! | TGAATCTGGTGTTTTGGATA+TGG | + | chr1_3:49204622-49204641 | Msa0122470:three_prime_UTR | 35.0% |
!! | TGGTGTTTTGGATATGGTTT+GGG | + | chr1_3:49204628-49204647 | Msa0122470:three_prime_UTR | 35.0% |
! | AACTCGTTCAAAGTATTCAC+TGG | + | chr1_3:49204696-49204715 | Msa0122470:three_prime_UTR | 35.0% |
! | AGTATTCACTGGTCAACTTT+TGG | + | chr1_3:49204707-49204726 | Msa0122470:three_prime_UTR | 35.0% |
!! | TTTTGGTTGTTAGTGTAGTC+TGG | + | chr1_3:49204756-49204775 | Msa0122470:three_prime_UTR | 35.0% |
ACTTCACTTACATGTACATG+TGG | + | chr1_3:49204791-49204810 | Msa0122470:three_prime_UTR | 35.0% | |
CTAATACATCAACTCGTACA+TGG | - | chr1_3:49204972-49204991 | None:intergenic | 35.0% | |
AGAGAAATAAGTCAGAGGAG+AGG | - | chr1_3:49200259-49200278 | None:intergenic | 40.0% | |
GTGTGAATGAATGCGATGTT+TGG | - | chr1_3:49200286-49200305 | None:intergenic | 40.0% | |
CATCGCATTCATTCACACAA+TGG | + | chr1_3:49200288-49200307 | Msa0122470:exon | 40.0% | |
! | AAGAAGAAGAAGAAGGTGTG+GGG | - | chr1_3:49200345-49200364 | None:intergenic | 40.0% |
! | GAAGAAGAAGAAGAAGGTGT+GGG | - | chr1_3:49200346-49200365 | None:intergenic | 40.0% |
AGAAGAAGAAGAAGAAGGTG+TGG | - | chr1_3:49200347-49200366 | None:intergenic | 40.0% | |
TTCTTCTTGCTTCCAACGAA+CGG | + | chr1_3:49200360-49200379 | Msa0122470:CDS | 40.0% | |
CGTATAATGTAACCGTTCGT+TGG | - | chr1_3:49200375-49200394 | None:intergenic | 40.0% | |
CGGTTACATTATACGATTGG+TGG | + | chr1_3:49200380-49200399 | Msa0122470:CDS | 40.0% | |
TGGCTCGTTAAATCATCTCA+AGG | + | chr1_3:49200400-49200419 | Msa0122470:CDS | 40.0% | |
AGTAGAACAAAGAAGCAAGC+AGG | - | chr1_3:49200506-49200525 | None:intergenic | 40.0% | |
GCTTTACTGGAAAGAATGTC+AGG | + | chr1_3:49200595-49200614 | Msa0122470:intron | 40.0% | |
TATACCATCGACAGTCTCAA+GGG | - | chr1_3:49200955-49200974 | None:intergenic | 40.0% | |
ATATACCATCGACAGTCTCA+AGG | - | chr1_3:49200956-49200975 | None:intergenic | 40.0% | |
AAACAGTGCACACTGGATAA+TGG | + | chr1_3:49201002-49201021 | Msa0122470:CDS | 40.0% | |
GTTAGAGAACAACCAGAAAC+CGG | + | chr1_3:49201215-49201234 | Msa0122470:CDS | 40.0% | |
CAATACCGAAGAAGTAGGAA+TGG | - | chr1_3:49201433-49201452 | None:intergenic | 40.0% | |
ATGGAGTCTTGCAATTCTCT+GGG | - | chr1_3:49201467-49201486 | None:intergenic | 40.0% | |
AATGGAGTCTTGCAATTCTC+TGG | - | chr1_3:49201468-49201487 | None:intergenic | 40.0% | |
TGAGACTTTGCATTCATCTC+CGG | - | chr1_3:49201493-49201512 | None:intergenic | 40.0% | |
AGTCTCAAAGAAGATGAGTG+GGG | + | chr1_3:49201506-49201525 | Msa0122470:CDS | 40.0% | |
GTTGATATTGCTTGTGGTAG+TGG | + | chr1_3:49201528-49201547 | Msa0122470:CDS | 40.0% | |
! | ATCCGGATCATGATTTTCGA+CGG | - | chr1_3:49201679-49201698 | None:intergenic | 40.0% |
AGTCCTTAGTACTATGCAAC+CGG | - | chr1_3:49201997-49202016 | None:intergenic | 40.0% | |
TCTTTCTCTGGATTCTTGAG+AGG | - | chr1_3:49202049-49202068 | None:intergenic | 40.0% | |
TCCGGTGATAACAAAGAAGT+AGG | - | chr1_3:49202308-49202327 | None:intergenic | 40.0% | |
TTATCACCGGATAAGACCAT+GGG | + | chr1_3:49202317-49202336 | Msa0122470:CDS | 40.0% | |
ACATATCCCGTTCATCTTTG+AGG | - | chr1_3:49202361-49202380 | None:intergenic | 40.0% | |
CGGGATATGTCAATTAAGAC+GGG | + | chr1_3:49202371-49202390 | Msa0122470:CDS | 40.0% | |
GTCAATGTTGTTCATGGTAG+TGG | + | chr1_3:49202398-49202417 | Msa0122470:CDS | 40.0% | |
!! | AATGTTGTTCATGGTAGTGG+CGG | + | chr1_3:49202401-49202420 | Msa0122470:CDS | 40.0% |
TCTTTATCTGGATGTGTTGC+AGG | - | chr1_3:49202494-49202513 | None:intergenic | 40.0% | |
AACACCCGTTCAATCACAAA+AGG | + | chr1_3:49202571-49202590 | Msa0122470:CDS | 40.0% | |
ACACCCGTTCAATCACAAAA+GGG | + | chr1_3:49202572-49202591 | Msa0122470:CDS | 40.0% | |
! | CTTCCCTTTTGTGATTGAAC+GGG | - | chr1_3:49202578-49202597 | None:intergenic | 40.0% |
GGAAGAGTAAACACAATGTC+TGG | + | chr1_3:49202593-49202612 | Msa0122470:intron | 40.0% | |
! | GGAGATTTTACAGAAGATGC+AGG | - | chr1_3:49202746-49202765 | None:intergenic | 40.0% |
CTGTAAAATCTCCTCAAGGA+AGG | + | chr1_3:49202753-49202772 | Msa0122470:CDS | 40.0% | |
TGACTTACATTCCTTCCTTG+AGG | - | chr1_3:49202767-49202786 | None:intergenic | 40.0% | |
!! | TGGGTTATTTTGTAGGAAGG+TGG | + | chr1_3:49203080-49203099 | Msa0122470:intron | 40.0% |
! | TTCTACCTCCCTTAGAGTTT+TGG | + | chr1_3:49203104-49203123 | Msa0122470:CDS | 40.0% |
TGATTGCGCCAAAACTCTAA+GGG | - | chr1_3:49203115-49203134 | None:intergenic | 40.0% | |
TTGATTGCGCCAAAACTCTA+AGG | - | chr1_3:49203116-49203135 | None:intergenic | 40.0% | |
CCGTGAGATTACAGAAATTC+AGG | + | chr1_3:49203238-49203257 | Msa0122470:CDS | 40.0% | |
! | GATTAAATAATGGAGCCGGT+GGG | - | chr1_3:49203633-49203652 | None:intergenic | 40.0% |
! | AGATTAAATAATGGAGCCGG+TGG | - | chr1_3:49203634-49203653 | None:intergenic | 40.0% |
TCGGGACGATAATTCAAGAT+AGG | - | chr1_3:49203700-49203719 | None:intergenic | 40.0% | |
GTTGTACTTGTAGTCTTCAG+TGG | + | chr1_3:49203727-49203746 | Msa0122470:intron | 40.0% | |
CTGGTAATATAAGCATGAGC+CGG | - | chr1_3:49203803-49203822 | None:intergenic | 40.0% | |
!! | ATTGGCTTGTCACAAATCTC+CGG | + | chr1_3:49203927-49203946 | Msa0122470:intron | 40.0% |
! | GCACGATTTTACCCACATTA+AGG | - | chr1_3:49203979-49203998 | None:intergenic | 40.0% |
GATTCAAAAGGAGGAGAAAC+AGG | - | chr1_3:49204058-49204077 | None:intergenic | 40.0% | |
GGTTTCGGAAACTCAATCAT+AGG | + | chr1_3:49204197-49204216 | Msa0122470:intron | 40.0% | |
ATCAGTGATAGCAGGACATA+TGG | - | chr1_3:49204316-49204335 | None:intergenic | 40.0% | |
! | TGGCTATGAAGTTTGTTTGG+TGG | + | chr1_3:49204522-49204541 | Msa0122470:intron | 40.0% |
ATGCTTCATAGCAACGAAGT+TGG | + | chr1_3:49204560-49204579 | Msa0122470:intron | 40.0% | |
!! | CTGGTGTTTTGGATATGGTT+TGG | + | chr1_3:49204627-49204646 | Msa0122470:three_prime_UTR | 40.0% |
!! | GGTGTTTTGGATATGGTTTG+GGG | + | chr1_3:49204629-49204648 | Msa0122470:three_prime_UTR | 40.0% |
ATCTCAATGGCCCGTTTATA+AGG | + | chr1_3:49204837-49204856 | Msa0122470:three_prime_UTR | 40.0% | |
ATACATCAACTCGTACATGG+AGG | - | chr1_3:49204969-49204988 | None:intergenic | 40.0% | |
GGGGTGCAATTAGAAGAACT+GGG | - | chr1_3:49200325-49200344 | None:intergenic | 45.0% | |
! | AGAAGAAGAAGAAGGTGTGG+GGG | - | chr1_3:49200344-49200363 | None:intergenic | 45.0% |
TTACTTTGTGGAAGAGACGC+CGG | - | chr1_3:49200449-49200468 | None:intergenic | 45.0% | |
GAACAAAGAAGCAAGCAGGT+GGG | - | chr1_3:49200502-49200521 | None:intergenic | 45.0% | |
AGAACAAAGAAGCAAGCAGG+TGG | - | chr1_3:49200503-49200522 | None:intergenic | 45.0% | |
!! | GGATAATGGTTTTACTCCCC+AGG | + | chr1_3:49201016-49201035 | Msa0122470:CDS | 45.0% |
TGTTTCATTGCTACCCCTGA+TGG | + | chr1_3:49201100-49201119 | Msa0122470:intron | 45.0% | |
!! | ACCAGAAACCGGTACTGATT+CGG | + | chr1_3:49201226-49201245 | Msa0122470:CDS | 45.0% |
!! | TGATTCGGGCAATGCTGTTT+TGG | + | chr1_3:49201241-49201260 | Msa0122470:CDS | 45.0% |
TCAGGCAATACCGAAGAAGT+AGG | - | chr1_3:49201438-49201457 | None:intergenic | 45.0% | |
TTCTTCGGTATTGCCTGAAG+AGG | + | chr1_3:49201440-49201459 | Msa0122470:CDS | 45.0% | |
TGGAGTCTTGCAATTCTCTG+GGG | - | chr1_3:49201466-49201485 | None:intergenic | 45.0% | |
AATTGCAAGACTCCATTCCC+CGG | + | chr1_3:49201471-49201490 | Msa0122470:CDS | 45.0% | |
AGACTTTGCATTCATCTCCG+GGG | - | chr1_3:49201491-49201510 | None:intergenic | 45.0% | |
GAGACTTTGCATTCATCTCC+GGG | - | chr1_3:49201492-49201511 | None:intergenic | 45.0% | |
!! | AGTGGGGTTGATATTGCTTG+TGG | + | chr1_3:49201522-49201541 | Msa0122470:CDS | 45.0% |
TCTTCATCTGAACGCTTGAG+AGG | - | chr1_3:49201636-49201655 | None:intergenic | 45.0% | |
! | ATGATTTTCGACGGCCTTTG+AGG | - | chr1_3:49201670-49201689 | None:intergenic | 45.0% |
AGTGAGGTCAACGATGTTCA+TGG | + | chr1_3:49201947-49201966 | Msa0122470:intron | 45.0% | |
TTGAGAGGATCTCCATATGC+AGG | - | chr1_3:49202034-49202053 | None:intergenic | 45.0% | |
TTCAAATGTTGTCGCAGCTG+TGG | + | chr1_3:49202271-49202290 | Msa0122470:intron | 45.0% | |
GTTATCACCGGATAAGACCA+TGG | + | chr1_3:49202316-49202335 | Msa0122470:CDS | 45.0% | |
AGGCACTCCTCAAAGATGAA+CGG | + | chr1_3:49202351-49202370 | Msa0122470:CDS | 45.0% | |
GGTAGGGTCAATGTTGTTCA+TGG | + | chr1_3:49202392-49202411 | Msa0122470:CDS | 45.0% | |
!! | ATGTTGTTCATGGTAGTGGC+GGG | + | chr1_3:49202402-49202421 | Msa0122470:CDS | 45.0% |
! | GCAGAGATCTGGTCTTTATC+TGG | - | chr1_3:49202506-49202525 | None:intergenic | 45.0% |
TCCTCCATCAGTCATTTCCA+AGG | - | chr1_3:49202537-49202556 | None:intergenic | 45.0% | |
AGTAAACACAATGTCTGGGC+AGG | + | chr1_3:49202598-49202617 | Msa0122470:intron | 45.0% | |
GGCGACAATTGAAACAGAAG+CGG | + | chr1_3:49202694-49202713 | Msa0122470:CDS | 45.0% | |
! | CAATGACTCTGGAGAAACTG+TGG | - | chr1_3:49202819-49202838 | None:intergenic | 45.0% |
!! | TAGCATTGGCTGAGAAGTGT+TGG | - | chr1_3:49202998-49203017 | None:intergenic | 45.0% |
TTTCTGTAATCTCACGGTCC+TGG | - | chr1_3:49203235-49203254 | None:intergenic | 45.0% | |
CTAACTGAGGTTCGGAAGAA+GGG | + | chr1_3:49203436-49203455 | Msa0122470:intron | 45.0% | |
AACGTAGAACTCTAACCCAC+CGG | + | chr1_3:49203615-49203634 | Msa0122470:intron | 45.0% | |
CTTATGCGTCTCATACCGAA+CGG | - | chr1_3:49204025-49204044 | None:intergenic | 45.0% | |
AAAAGGAGGAGAAACAGGCT+TGG | - | chr1_3:49204053-49204072 | None:intergenic | 45.0% | |
! | CTGACAGTGGATTCAAAAGG+AGG | - | chr1_3:49204067-49204086 | None:intergenic | 45.0% |
! | CTGCTGACAGTGGATTCAAA+AGG | - | chr1_3:49204070-49204089 | None:intergenic | 45.0% |
GTGATAGCAGGACATATGGT+TGG | - | chr1_3:49204312-49204331 | None:intergenic | 45.0% | |
AACTCGTACATGGAGGAGAT+TGG | - | chr1_3:49204962-49204981 | None:intergenic | 45.0% | |
TCTCTCTCTCTCACGCTGTA+CGG | - | chr1_3:49200230-49200249 | None:intergenic | 50.0% | |
! | GGGGGTGCAATTAGAAGAAC+TGG | - | chr1_3:49200326-49200345 | None:intergenic | 50.0% |
AACCACCGTTTAGCCATCTC+CGG | + | chr1_3:49200427-49200446 | Msa0122470:CDS | 50.0% | |
!! | GATTCAGGGAAGAAGCGCTT+CGG | + | chr1_3:49200886-49200905 | Msa0122470:intron | 50.0% |
!! | ATTCAGGGAAGAAGCGCTTC+GGG | + | chr1_3:49200887-49200906 | Msa0122470:intron | 50.0% |
GTTTCCCTTGAGACTGTCGA+TGG | + | chr1_3:49200948-49200967 | Msa0122470:CDS | 50.0% | |
!! | CCAGAAACCGGTACTGATTC+GGG | + | chr1_3:49201227-49201246 | Msa0122470:CDS | 50.0% |
AGCATTGCCCGAATCAGTAC+CGG | - | chr1_3:49201237-49201256 | None:intergenic | 50.0% | |
TTGCATTCATCTCCGGGGAA+TGG | - | chr1_3:49201486-49201505 | None:intergenic | 50.0% | |
! | CTCGATGTAGGATGCTGCTT+CGG | - | chr1_3:49201609-49201628 | None:intergenic | 50.0% |
AAGCAGCATCCTACATCGAG+AGG | + | chr1_3:49201609-49201628 | Msa0122470:CDS | 50.0% | |
TTGAGAGGACCTCTCGATGT+AGG | - | chr1_3:49201621-49201640 | None:intergenic | 50.0% | |
AGAGCCAAGCTCTACCTCAA+AGG | + | chr1_3:49201653-49201672 | Msa0122470:CDS | 50.0% | |
GGCCGTCGAAAATCATGATC+CGG | + | chr1_3:49201674-49201693 | Msa0122470:CDS | 50.0% | |
TCTCTCGTGACCAAAGACGT+AGG | - | chr1_3:49201878-49201897 | None:intergenic | 50.0% | |
GTCAACGATGTTCATGGCAG+TGG | + | chr1_3:49201953-49201972 | Msa0122470:intron | 50.0% | |
TGGCCGGTTGCATAGTACTA+AGG | + | chr1_3:49201991-49202010 | Msa0122470:intron | 50.0% | |
CATATGCAGGCTGCTTCTTC+TGG | - | chr1_3:49202021-49202040 | None:intergenic | 50.0% | |
CAGAAGAAGCAGCCTGCATA+TGG | + | chr1_3:49202019-49202038 | Msa0122470:intron | 50.0% | |
GTAGAGCTCTGCTCTTTCTC+TGG | - | chr1_3:49202061-49202080 | None:intergenic | 50.0% | |
AGAGCAGAGCTCTACCTTGA+AGG | + | chr1_3:49202066-49202085 | Msa0122470:intron | 50.0% | |
GAGCTCTACCTTGAAGGTTG+TGG | + | chr1_3:49202072-49202091 | Msa0122470:intron | 50.0% | |
!! | CGATCTCCCATGGTCTTATC+CGG | - | chr1_3:49202326-49202345 | None:intergenic | 50.0% |
GACCATGGGAGATCGCAATA+AGG | + | chr1_3:49202331-49202350 | Msa0122470:CDS | 50.0% | |
! | TGCCTTATTGCGATCTCCCA+TGG | - | chr1_3:49202336-49202355 | None:intergenic | 50.0% |
GGCACTCCTCAAAGATGAAC+GGG | + | chr1_3:49202352-49202371 | Msa0122470:CDS | 50.0% | |
AGCAGGTTGCTTCTTCTGGT+AGG | - | chr1_3:49202462-49202481 | None:intergenic | 50.0% | |
CAGTAGCAGGTTGCTTCTTC+TGG | - | chr1_3:49202466-49202485 | None:intergenic | 50.0% | |
CAGAAGAAGCAACCTGCTAC+TGG | + | chr1_3:49202464-49202483 | Msa0122470:intron | 50.0% | |
AGTCATTTCCAAGGCTGCTG+AGG | - | chr1_3:49202528-49202547 | None:intergenic | 50.0% | |
GCAGCCTTGGAAATGACTGA+TGG | + | chr1_3:49202530-49202549 | Msa0122470:CDS | 50.0% | |
GCCTTGGAAATGACTGATGG+AGG | + | chr1_3:49202533-49202552 | Msa0122470:CDS | 50.0% | |
GGAAATGACTGATGGAGGAC+TGG | + | chr1_3:49202538-49202557 | Msa0122470:CDS | 50.0% | |
! | TTGCGCCAAAACTCTAAGGG+AGG | - | chr1_3:49203112-49203131 | None:intergenic | 50.0% |
TGTAATCTCACGGTCCTGGA+CGG | - | chr1_3:49203231-49203250 | None:intergenic | 50.0% | |
CCTTCTTCCGAACCTCAGTT+AGG | - | chr1_3:49203438-49203457 | None:intergenic | 50.0% | |
CCTAACTGAGGTTCGGAAGA+AGG | + | chr1_3:49203435-49203454 | Msa0122470:intron | 50.0% | |
TGAGGTTCGGAAGAAGGGTA+GGG | + | chr1_3:49203441-49203460 | Msa0122470:intron | 50.0% | |
! | TTGTTTTCCTCTCCAAGCGC+CGG | - | chr1_3:49203949-49203968 | None:intergenic | 50.0% |
AGACGCCGGAGATGGCTAAA+CGG | - | chr1_3:49200435-49200454 | None:intergenic | 55.0% | |
!! | CCCGAATCAGTACCGGTTTC+TGG | - | chr1_3:49201230-49201249 | None:intergenic | 55.0% |
!! | CAATTCTCTGGGGCCTCTTC+AGG | - | chr1_3:49201456-49201475 | None:intergenic | 55.0% |
!! | ACGGCCTTTGAGGTAGAGCT+TGG | - | chr1_3:49201660-49201679 | None:intergenic | 55.0% |
ACGATGTTCATGGCAGTGGC+CGG | + | chr1_3:49201957-49201976 | Msa0122470:intron | 55.0% | |
GTTGCAGGATCTCCAGTAGC+AGG | - | chr1_3:49202479-49202498 | None:intergenic | 55.0% | |
GAGGCTCTTCATCATTGGGC+AGG | + | chr1_3:49203288-49203307 | Msa0122470:CDS | 55.0% | |
CTGAGGTTCGGAAGAAGGGT+AGG | + | chr1_3:49203440-49203459 | Msa0122470:intron | 55.0% | |
TGTCACAAATCTCCGGCGCT+TGG | + | chr1_3:49203934-49203953 | Msa0122470:intron | 55.0% | |
TGTGGAAGAGACGCCGGAGA+TGG | - | chr1_3:49200443-49200462 | None:intergenic | 60.0% | |
! | AGTGGCCGGACTAGACGTAG+TGG | + | chr1_3:49201971-49201990 | Msa0122470:intron | 60.0% |
ACCGGCCACTACGTCTAGTC+CGG | - | chr1_3:49201979-49201998 | None:intergenic | 60.0% | |
GCGGGAATAGACGTAGTGCC+CGG | + | chr1_3:49202420-49202439 | Msa0122470:CDS | 60.0% | |
AGGCTGCTGAGGCAGAGATC+TGG | - | chr1_3:49202517-49202536 | None:intergenic | 60.0% | |
GATCTCTGCCTCAGCAGCCT+TGG | + | chr1_3:49202517-49202536 | Msa0122470:CDS | 60.0% | |
CAAATCTCCGGCGCTTGGAG+AGG | + | chr1_3:49203939-49203958 | Msa0122470:intron | 60.0% | |
CGCCGGAGATGGCTAAACGG+TGG | - | chr1_3:49200432-49200451 | None:intergenic | 65.0% | |
! | GCCGGACTAGACGTAGTGGC+CGG | + | chr1_3:49201975-49201994 | Msa0122470:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 49200183 | 49205013 | 49200183 | ID=Msa0122470;Name=Msa0122470 |
chr1_3 | mRNA | 49200183 | 49205013 | 49200183 | ID=Msa0122470-mRNA-1;Parent=Msa0122470;Name=Msa0122470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=124|0.66|0.46|1|0.58|0.38|13|397|542 |
chr1_3 | exon | 49200183 | 49200464 | 49200183 | ID=Msa0122470-mRNA-1:exon:14873;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49200893 | 49201037 | 49200893 | ID=Msa0122470-mRNA-1:exon:14874;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49201155 | 49201302 | 49201155 | ID=Msa0122470-mRNA-1:exon:14875;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49201418 | 49201587 | 49201418 | ID=Msa0122470-mRNA-1:exon:14876;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49201597 | 49201750 | 49201597 | ID=Msa0122470-mRNA-1:exon:14877;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49201858 | 49201961 | 49201858 | ID=Msa0122470-mRNA-1:exon:14878;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49202088 | 49202163 | 49202088 | ID=Msa0122470-mRNA-1:exon:14879;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49202288 | 49202451 | 49202288 | ID=Msa0122470-mRNA-1:exon:14880;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49202467 | 49202598 | 49202467 | ID=Msa0122470-mRNA-1:exon:14881;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49202620 | 49202860 | 49202620 | ID=Msa0122470-mRNA-1:exon:14882;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49203095 | 49203153 | 49203095 | ID=Msa0122470-mRNA-1:exon:14883;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49203236 | 49203309 | 49203236 | ID=Msa0122470-mRNA-1:exon:14884;Parent=Msa0122470-mRNA-1 |
chr1_3 | exon | 49204613 | 49205013 | 49204613 | ID=Msa0122470-mRNA-1:exon:14885;Parent=Msa0122470-mRNA-1 |
chr1_3 | five_prime_UTR | 49200183 | 49200306 | 49200183 | ID=Msa0122470-mRNA-1:five_prime_utr;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49200307 | 49200464 | 49200307 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49200893 | 49201037 | 49200893 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49201155 | 49201302 | 49201155 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49201418 | 49201587 | 49201418 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49201597 | 49201750 | 49201597 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49201858 | 49201961 | 49201858 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49202088 | 49202163 | 49202088 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49202288 | 49202451 | 49202288 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49202467 | 49202598 | 49202467 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49202620 | 49202860 | 49202620 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49203095 | 49203153 | 49203095 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49203236 | 49203309 | 49203236 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | CDS | 49204613 | 49204616 | 49204613 | ID=Msa0122470-mRNA-1:cds;Parent=Msa0122470-mRNA-1 |
chr1_3 | three_prime_UTR | 49204617 | 49205013 | 49204617 | ID=Msa0122470-mRNA-1:three_prime_utr;Parent=Msa0122470-mRNA-1 |
Gene Sequence |
Protein sequence |