Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122130 | XP_013468383.1 | 94.425 | 843 | 41 | 2 | 1 | 839 | 1 | 841 | 0.0 | 1528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122130 | A0A072VWH9 | 94.425 | 843 | 41 | 2 | 1 | 839 | 1 | 841 | 0.0 | 1528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026970 | Msa0122130 | 0.978781 | 1.502872e-146 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122130 | MtrunA17_Chr1g0182831 | 94.425 | 843 | 41 | 2 | 1 | 839 | 1 | 841 | 0.0 | 1528 |
| Msa0122130 | MtrunA17_Chr7g0262631 | 56.999 | 893 | 316 | 23 | 1 | 839 | 103 | 981 | 0.0 | 824 |
| Msa0122130 | MtrunA17_Chr1g0182111 | 28.438 | 429 | 227 | 18 | 1 | 382 | 73 | 468 | 6.24e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122130 | AT4G28760.2 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 7.82e-117 | 377 |
| Msa0122130 | AT4G28760.1 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 7.82e-117 | 377 |
| Msa0122130 | AT5G43880.3 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.22e-86 | 291 |
| Msa0122130 | AT5G43880.2 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.22e-86 | 291 |
| Msa0122130 | AT5G43880.4 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.22e-86 | 291 |
| Msa0122130 | AT5G43880.1 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.22e-86 | 291 |
| Msa0122130 | AT2G20240.1 | 33.333 | 780 | 341 | 26 | 87 | 836 | 82 | 712 | 2.13e-83 | 282 |
| Msa0122130 | AT3G53540.1 | 34.884 | 172 | 88 | 5 | 1 | 162 | 72 | 229 | 5.12e-15 | 80.1 |
| Msa0122130 | AT3G53540.2 | 34.884 | 172 | 88 | 5 | 1 | 162 | 103 | 260 | 5.83e-15 | 80.1 |
Find 212 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGACATGTATGGTCATTT+AGG | 0.154963 | 1_3:+48476479 | Msa0122130:CDS |
| CCTTATTCTACACAATCTTT+AGG | 0.208775 | 1_3:+48477325 | Msa0122130:CDS |
| TTTCGTAGCACTAATAAATT+AGG | 0.209995 | 1_3:-48480092 | None:intergenic |
| TCAAGAGGGTTCATGTTTAA+TGG | 0.218673 | 1_3:+48479543 | Msa0122130:CDS |
| TAATGTAGTTGCTAAATTAA+TGG | 0.232485 | 1_3:+48476388 | Msa0122130:CDS |
| TGGTGATTTGTCAATTAAAT+TGG | 0.255525 | 1_3:-48479092 | None:intergenic |
| TTGCTATTAATTCATTCATT+TGG | 0.255927 | 1_3:-48479579 | None:intergenic |
| AATGTAGTTGCTAAATTAAT+GGG | 0.258803 | 1_3:+48476389 | Msa0122130:CDS |
| TTCCTTAGACACTAAGTTAG+AGG | 0.280175 | 1_3:+48479210 | Msa0122130:CDS |
| CACCAATGCCAAGGCATTCT+TGG | 0.282646 | 1_3:+48477278 | Msa0122130:CDS |
| CTTATTCTACACAATCTTTA+GGG | 0.283530 | 1_3:+48477326 | Msa0122130:CDS |
| CAAATGGGATGAAGTTTGTT+TGG | 0.291147 | 1_3:+48479599 | Msa0122130:CDS |
| AATTTAGCAACTACATTAGA+TGG | 0.294516 | 1_3:-48476383 | None:intergenic |
| GGAGATTCTAACACTGATAT+TGG | 0.294543 | 1_3:-48478703 | None:intergenic |
| TTCTCAGGCCTTCATGCATT+TGG | 0.296383 | 1_3:-48477153 | None:intergenic |
| CCTAAAGATTGTGTAGAATA+AGG | 0.296581 | 1_3:-48477325 | None:intergenic |
| TTCGGCAATGACAAATCTTC+TGG | 0.299484 | 1_3:+48476881 | Msa0122130:CDS |
| TGCTATTAATTCATTCATTT+GGG | 0.311745 | 1_3:-48479578 | None:intergenic |
| AGTAAGAAATCATCATTTAA+AGG | 0.317903 | 1_3:+48477736 | Msa0122130:CDS |
| CACTAATAAATTAGGTGAAC+AGG | 0.318855 | 1_3:-48480084 | None:intergenic |
| GAATAAAACTTTACATTCTT+CGG | 0.320352 | 1_3:+48477186 | Msa0122130:CDS |
| AACAAATGATCTTAAGGCTT+TGG | 0.324183 | 1_3:+48477036 | Msa0122130:CDS |
| AATCTCTTTAGCCACTTCTA+TGG | 0.332582 | 1_3:-48477125 | None:intergenic |
| GTATGGGAGAACAGGAATTA+TGG | 0.340913 | 1_3:+48476962 | Msa0122130:CDS |
| ATCCTCTAACTTAGTGTCTA+AGG | 0.342936 | 1_3:-48479212 | None:intergenic |
| CTTTGAGGCGATGGATTTGT+TGG | 0.343660 | 1_3:-48477064 | None:intergenic |
| TCTATATGCATCTTGATGAT+AGG | 0.344195 | 1_3:-48476318 | None:intergenic |
| AAGAATCTTCATCCCATGAT+AGG | 0.352056 | 1_3:-48479138 | None:intergenic |
| CTTCTCTTGGCCTCATTAAG+AGG | 0.356613 | 1_3:-48479391 | None:intergenic |
| TGACAAATCATATCATGATT+TGG | 0.357422 | 1_3:+48477246 | Msa0122130:CDS |
| TAATCAACCTGTTCTGTGCT+TGG | 0.362030 | 1_3:-48476575 | None:intergenic |
| CTTCTAATCACCGATAAATT+CGG | 0.363877 | 1_3:-48476437 | None:intergenic |
| GTCATGACATCTAACGAAAA+AGG | 0.364074 | 1_3:+48477418 | Msa0122130:CDS |
| ACTATCCATTAAAACCTCTA+AGG | 0.368536 | 1_3:+48479182 | Msa0122130:CDS |
| GAGAATGGAGATTGATGCTT+TGG | 0.368829 | 1_3:+48479699 | Msa0122130:CDS |
| ATGAATGAATTAATAGCAAA+TGG | 0.370571 | 1_3:+48479583 | Msa0122130:CDS |
| AAGACATGTATGGTCATTTA+GGG | 0.374102 | 1_3:+48476480 | Msa0122130:CDS |
| ATCAAACCTTTGAAGATGTT+CGG | 0.376387 | 1_3:+48476863 | Msa0122130:CDS |
| GCATCGATGTATAGCAGAAT+TGG | 0.379470 | 1_3:-48479953 | None:intergenic |
| TGTTTCGGTGGCAATAGTTT+CGG | 0.382934 | 1_3:-48477839 | None:intergenic |
| TCTAAGGAACAAGTCCTTAG+AGG | 0.385073 | 1_3:-48479196 | None:intergenic |
| AGAATGGAGATTGATGCTTT+GGG | 0.385840 | 1_3:+48479700 | Msa0122130:CDS |
| CAAAGTTTCTATCAGAGAAA+TGG | 0.385972 | 1_3:+48477082 | Msa0122130:CDS |
| AACATTGGAAAGTGGAAGAT+AGG | 0.388053 | 1_3:+48476513 | Msa0122130:CDS |
| AAAAGGAGAGCCGAATTTAT+CGG | 0.390146 | 1_3:+48476427 | Msa0122130:CDS |
| TTGGAAGTTGTTGGCTATGA+TGG | 0.400242 | 1_3:+48479466 | Msa0122130:CDS |
| TTTCTCTGATAGAAACTTTG+AGG | 0.402390 | 1_3:-48477079 | None:intergenic |
| AAATGGGATGAAGTTTGTTT+GGG | 0.403555 | 1_3:+48479600 | Msa0122130:CDS |
| TCATTTATGTCCCTCAATGA+TGG | 0.404068 | 1_3:-48479349 | None:intergenic |
| CATCTTCAAATTGCTTCGAT+TGG | 0.408190 | 1_3:-48476730 | None:intergenic |
| ACCAATGCCAAGGCATTCTT+GGG | 0.408772 | 1_3:+48477279 | Msa0122130:CDS |
| TCCACTTTCCAATGTTTCAA+TGG | 0.409462 | 1_3:-48476506 | None:intergenic |
| TTGTGTTAATGCTGCACTAT+TGG | 0.418432 | 1_3:+48479447 | Msa0122130:CDS |
| AAGCTCAAACAATGAACTCT+TGG | 0.423027 | 1_3:+48476766 | Msa0122130:CDS |
| AGGAAAGAGGTTGTGCAGAG+TGG | 0.423258 | 1_3:+48479661 | Msa0122130:CDS |
| TACTGATGGAACTGATGTTT+CGG | 0.425769 | 1_3:-48477854 | None:intergenic |
| GTAAGAAATCATCATTTAAA+GGG | 0.426376 | 1_3:+48477737 | Msa0122130:CDS |
| ATGGGTCCAATGGGCTTTCA+AGG | 0.426820 | 1_3:-48479330 | None:intergenic |
| GGGTGGGGACAGTCACAGCC+TGG | 0.428898 | 1_3:+48479621 | Msa0122130:CDS |
| ATTATGATCAAGCAGCTGTA+TGG | 0.429931 | 1_3:+48476945 | Msa0122130:CDS |
| CCCTCAATGATGGGTCCAAT+GGG | 0.432400 | 1_3:-48479339 | None:intergenic |
| GTTCCATCAGTAAATTCATC+TGG | 0.434878 | 1_3:+48477865 | Msa0122130:CDS |
| AGATAGGTTTATGATGGATA+AGG | 0.434947 | 1_3:+48476529 | Msa0122130:CDS |
| GTAAATTCATCTGGAGTCCT+TGG | 0.441528 | 1_3:+48477874 | Msa0122130:CDS |
| AAGCAGCTGTATGGGAGAAC+AGG | 0.444633 | 1_3:+48476954 | Msa0122130:CDS |
| TCATCATCCAAGCACAGAAC+AGG | 0.447661 | 1_3:+48476568 | Msa0122130:CDS |
| GATGAAGTTTGTTTGGGGTG+GGG | 0.447920 | 1_3:+48479606 | Msa0122130:CDS |
| TGGGAGAACAAATGATCTTA+AGG | 0.453216 | 1_3:+48477030 | Msa0122130:CDS |
| TCATTTGTTCTCCCAGGACT+AGG | 0.456729 | 1_3:-48477022 | None:intergenic |
| GGATGAAGTTTGTTTGGGGT+GGG | 0.457347 | 1_3:+48479605 | Msa0122130:CDS |
| TCCTTGGAATGCACGAAAGA+TGG | 0.457734 | 1_3:+48478754 | Msa0122130:CDS |
| AGAAAATGTTGTTAGGAAAG+AGG | 0.458595 | 1_3:+48479648 | Msa0122130:CDS |
| TGGTTGTAGAAAATGTTGTT+AGG | 0.459275 | 1_3:+48479641 | Msa0122130:CDS |
| TGTGCAGAGTGGGTTGGTTG+AGG | 0.460054 | 1_3:+48479672 | Msa0122130:CDS |
| GTCAAATGAGTTCTCATCAC+TGG | 0.460647 | 1_3:-48477227 | None:intergenic |
| CAATACAGCTCATGAATCCT+TGG | 0.464219 | 1_3:+48478738 | Msa0122130:CDS |
| GGCTTTGACTCATTCAGTCC+AGG | 0.465246 | 1_3:-48478637 | None:intergenic |
| ACCACTATTCGAGTAGATTC+CGG | 0.465298 | 1_3:-48476992 | None:intergenic |
| CAGTGGCTAGGACCCTATCA+TGG | 0.471424 | 1_3:+48479125 | Msa0122130:CDS |
| TCATAGACTGTTGAAGATGC+AGG | 0.472164 | 1_3:-48477649 | None:intergenic |
| AACGTGTTCTCCTGAGTCCT+CGG | 0.472642 | 1_3:+48477354 | Msa0122130:CDS |
| GATAGGTTTATGATGGATAA+GGG | 0.474776 | 1_3:+48476530 | Msa0122130:CDS |
| GGGCTTGAAACCCTTTCAAA+AGG | 0.477681 | 1_3:+48476410 | Msa0122130:CDS |
| GGAAAGAGGTTGTGCAGAGT+GGG | 0.478282 | 1_3:+48479662 | Msa0122130:CDS |
| TACATTAGATGGACTGTGCT+TGG | 0.482853 | 1_3:-48476372 | None:intergenic |
| GTGTCGAGAAACTCTACTTT+GGG | 0.485906 | 1_3:+48477460 | Msa0122130:CDS |
| TCAATTAAATTGGACTTCAT+CGG | 0.485939 | 1_3:-48479082 | None:intergenic |
| TCCGGAATCTACTCGAATAG+TGG | 0.486429 | 1_3:+48476991 | Msa0122130:CDS |
| CAAACAATGAACTCTTGGTC+AGG | 0.487112 | 1_3:+48476771 | Msa0122130:CDS |
| GAACAGGTTGATTACAAAGA+TGG | 0.487334 | 1_3:+48476584 | Msa0122130:CDS |
| GAAGCAATTTGAAGATGCAT+TGG | 0.489886 | 1_3:+48476736 | Msa0122130:CDS |
| TGTGTCGAGAAACTCTACTT+TGG | 0.491632 | 1_3:+48477459 | Msa0122130:CDS |
| ACTGTTGAAGATGCAGGGTC+AGG | 0.493191 | 1_3:-48477643 | None:intergenic |
| TGATAGAAACTTTGAGGCGA+TGG | 0.494215 | 1_3:-48477073 | None:intergenic |
| CATTTATGTCCCTCAATGAT+GGG | 0.494789 | 1_3:-48479348 | None:intergenic |
| TTTGGAATCTCTGGCACCAA+GGG | 0.495428 | 1_3:-48478658 | None:intergenic |
| GAAAGAGTAAGAAGAAGGAT+AGG | 0.496544 | 1_3:+48476903 | Msa0122130:CDS |
| CCCATTGGACCCATCATTGA+GGG | 0.497319 | 1_3:+48479339 | Msa0122130:CDS |
| GGGATGAAGTTTGTTTGGGG+TGG | 0.498767 | 1_3:+48479604 | Msa0122130:CDS |
| AGAAACGACTTTCTGAAAGA+TGG | 0.500107 | 1_3:+48477392 | Msa0122130:CDS |
| GATTCTCCTCAAAACAATTG+TGG | 0.500159 | 1_3:+48477613 | Msa0122130:CDS |
| TCCCAAGAATGCCTTGGCAT+TGG | 0.500183 | 1_3:-48477280 | None:intergenic |
| GTGGTATTGAAGCCTAGTCC+TGG | 0.500707 | 1_3:+48477010 | Msa0122130:CDS |
| AGCATTATGTTACCAGTTGG+AGG | 0.501399 | 1_3:+48476097 | Msa0122130:five_prime_UTR |
| TTAAGATCATTTGTTCTCCC+AGG | 0.502592 | 1_3:-48477028 | None:intergenic |
| AGATGTTGATGAGGGGAAGA+TGG | 0.504294 | 1_3:+48476649 | Msa0122130:CDS |
| TTCTACACAATCTTTAGGGC+GGG | 0.506332 | 1_3:+48477330 | Msa0122130:CDS |
| TCCCTCAATGATGGGTCCAA+TGG | 0.507615 | 1_3:-48479340 | None:intergenic |
| GCTGTATTGTAATCTTCAAA+TGG | 0.510016 | 1_3:-48478724 | None:intergenic |
| GTTGGTTGAGGTTATGAGAA+TGG | 0.510683 | 1_3:+48479684 | Msa0122130:CDS |
| TCAAATTCCCTCTACTCCAC+AGG | 0.512881 | 1_3:+48476817 | Msa0122130:CDS |
| ATTCTCCTCAAAACAATTGT+GGG | 0.513750 | 1_3:+48477614 | Msa0122130:CDS |
| AAACGAGTGTTGTCAAATAG+TGG | 0.517727 | 1_3:-48479980 | None:intergenic |
| ACCATCTTTCGTGCATTCCA+AGG | 0.518813 | 1_3:-48478755 | None:intergenic |
| AATAAGGACTGCCACATACA+TGG | 0.520139 | 1_3:-48477309 | None:intergenic |
| TAGGGTGGCCATTGAAACAT+TGG | 0.520221 | 1_3:+48476498 | Msa0122130:CDS |
| TATGAAGTGTTGTGAAATAG+TGG | 0.520551 | 1_3:-48479895 | None:intergenic |
| GCTGCACTATTGGAAGTTGT+TGG | 0.521163 | 1_3:+48479457 | Msa0122130:CDS |
| AGTGGAAGATAGGTTTATGA+TGG | 0.522613 | 1_3:+48476523 | Msa0122130:CDS |
| GATTATTATCAAGACATGTA+TGG | 0.523774 | 1_3:+48476470 | Msa0122130:CDS |
| TGAATGAATTAATAGCAAAT+GGG | 0.524504 | 1_3:+48479584 | Msa0122130:CDS |
| TTATGATCAAGCAGCTGTAT+GGG | 0.524672 | 1_3:+48476946 | Msa0122130:CDS |
| ACAATTCAGAAACCTCCAAC+TGG | 0.525006 | 1_3:-48476109 | None:intergenic |
| TGGAGGGAAGATGTTGATGA+GGG | 0.531365 | 1_3:+48476641 | Msa0122130:CDS |
| CTCATCACTGGAATAGCCAC+TGG | 0.537890 | 1_3:-48477215 | None:intergenic |
| TGAACCCTCTTGAACAAAGA+AGG | 0.540265 | 1_3:-48479533 | None:intergenic |
| CTAGCCACTGATTCTATATG+TGG | 0.540349 | 1_3:-48479112 | None:intergenic |
| TTCTGGAAAGAGTAAGAAGA+AGG | 0.543740 | 1_3:+48476898 | Msa0122130:CDS |
| AGAAGCATTATGTTACCAGT+TGG | 0.546716 | 1_3:+48476094 | Msa0122130:five_prime_UTR |
| ACAGAGACAGAGAAGGAAGA+AGG | 0.546977 | 1_3:+48475964 | None:intergenic |
| TCTCAAAGCTTCAATGTTGG+TGG | 0.547700 | 1_3:+48477907 | Msa0122130:CDS |
| CATTCTTCGGTATTCTCCAG+TGG | 0.549767 | 1_3:+48477199 | Msa0122130:CDS |
| GCTTTGGGGAGGGAAATAGA+AGG | 0.550557 | 1_3:+48479715 | Msa0122130:CDS |
| AAGGTCCTTCTTTGTTCAAG+AGG | 0.550595 | 1_3:+48479528 | Msa0122130:CDS |
| GGAGATTGATGCTTTGGGGA+GGG | 0.550626 | 1_3:+48479705 | Msa0122130:CDS |
| TTGTGAAATAGTGGCTATAG+TGG | 0.552168 | 1_3:-48479886 | None:intergenic |
| CTGTACTCAGCCTCTTAATG+AGG | 0.553577 | 1_3:+48479381 | Msa0122130:CDS |
| GTATTCCCTTGAAAGCCCAT+TGG | 0.555850 | 1_3:+48479324 | Msa0122130:CDS |
| TGCATCATCCTGTGGAGTAG+AGG | 0.559463 | 1_3:-48476825 | None:intergenic |
| GCATCATCCTGTGGAGTAGA+GGG | 0.559621 | 1_3:-48476824 | None:intergenic |
| ATGTTGCAGATTTCTTTACA+AGG | 0.559791 | 1_3:-48477501 | None:intergenic |
| TGGGATTGCATCCATGTATG+TGG | 0.563606 | 1_3:+48477298 | Msa0122130:CDS |
| AGGTCCTTCTTTGTTCAAGA+GGG | 0.565387 | 1_3:+48479529 | Msa0122130:CDS |
| GTGGAGGGAAGATGTTGATG+AGG | 0.565512 | 1_3:+48476640 | Msa0122130:CDS |
| GAACAAAGAAGGACCTTCTG+TGG | 0.566033 | 1_3:-48479522 | None:intergenic |
| TCATTGCCGAACATCTTCAA+AGG | 0.569896 | 1_3:-48476869 | None:intergenic |
| ATGTTTAATGGACCACATTG+TGG | 0.570896 | 1_3:+48479555 | Msa0122130:CDS |
| GCCCATTGGACCCATCATTG+AGG | 0.570908 | 1_3:+48479338 | Msa0122130:CDS |
| TGGAGATTGATGCTTTGGGG+AGG | 0.573132 | 1_3:+48479704 | Msa0122130:CDS |
| AGAATCTTCATCCCATGATA+GGG | 0.573830 | 1_3:-48479137 | None:intergenic |
| CTCTTAATGAGGCCAAGAGA+AGG | 0.573920 | 1_3:+48479392 | Msa0122130:CDS |
| ATGACTCATTTCACACAAGA+TGG | 0.574580 | 1_3:+48479302 | Msa0122130:CDS |
| GCCATTGAAACATTGGAAAG+TGG | 0.577706 | 1_3:+48476505 | Msa0122130:CDS |
| AGAGGTTGTGCAGAGTGGGT+TGG | 0.578519 | 1_3:+48479666 | Msa0122130:CDS |
| GGATGCAATCTCAGAGAGGA+AGG | 0.583915 | 1_3:+48476618 | Msa0122130:CDS |
| TCTATGCACACCGAGGACTC+AGG | 0.584334 | 1_3:-48477364 | None:intergenic |
| ACTCCAGATGAATTTACTGA+TGG | 0.584574 | 1_3:-48477868 | None:intergenic |
| AGTCTCTAGTGAACCACAAG+AGG | 0.584725 | 1_3:+48477963 | Msa0122130:CDS |
| CAGGAATTATGGATACTCTC+CGG | 0.585899 | 1_3:+48476973 | Msa0122130:CDS |
| ATGCAATCCCAAGAATGCCT+TGG | 0.586761 | 1_3:-48477286 | None:intergenic |
| ATCTCAGAGAGGAAGGTGGA+GGG | 0.587948 | 1_3:+48476625 | Msa0122130:CDS |
| AGTGGCTAGGACCCTATCAT+GGG | 0.590425 | 1_3:+48479126 | Msa0122130:CDS |
| AATCTCAGAGAGGAAGGTGG+AGG | 0.592424 | 1_3:+48476624 | Msa0122130:CDS |
| ATTTGGAATCTCTGGCACCA+AGG | 0.593391 | 1_3:-48478659 | None:intergenic |
| TGTACTTGAATCCATAGAAG+TGG | 0.594058 | 1_3:+48477114 | Msa0122130:CDS |
| TGGTATTGAAGCCTAGTCCT+GGG | 0.594500 | 1_3:+48477011 | Msa0122130:CDS |
| TCATGGGATGAAGATTCTTG+TGG | 0.595361 | 1_3:+48479142 | Msa0122130:CDS |
| ACTGAATGAGTCAAAGCCCT+TGG | 0.595715 | 1_3:+48478642 | Msa0122130:CDS |
| AGGCCAAGAGAAGGAAAATG+AGG | 0.596909 | 1_3:+48479401 | Msa0122130:CDS |
| GCATCATCAACACCGAGGCT+AGG | 0.600474 | 1_3:-48477673 | None:intergenic |
| TTTGAGACACATTATCTCCA+AGG | 0.601654 | 1_3:-48477891 | None:intergenic |
| AACAAAGAAGGACCTTCTGT+GGG | 0.601670 | 1_3:-48479521 | None:intergenic |
| CATTCATTTGGGCCACAATG+TGG | 0.603105 | 1_3:-48479567 | None:intergenic |
| TGAGTCCTCGGTGTGCATAG+AGG | 0.603550 | 1_3:+48477366 | Msa0122130:CDS |
| TTTACAGGCAGATGAGACGA+GGG | 0.606242 | 1_3:+48479778 | Msa0122130:exon |
| TGCACGAAAGATGGTCACAT+TGG | 0.606409 | 1_3:+48478763 | Msa0122130:CDS |
| ATGTAGTTGCTAAATTAATG+GGG | 0.607079 | 1_3:+48476390 | Msa0122130:CDS |
| TGTGCAGTGGGACCCACAGA+AGG | 0.607104 | 1_3:+48479509 | Msa0122130:CDS |
| ACTAATAAATTAGGTGAACA+GGG | 0.608566 | 1_3:-48480083 | None:intergenic |
| TCACAAAGAACATGGCTCCA+AGG | 0.608900 | 1_3:+48477696 | Msa0122130:CDS |
| TGTTGCAGATTTCTTTACAA+GGG | 0.609571 | 1_3:-48477500 | None:intergenic |
| TGGGTCCAATGGGCTTTCAA+GGG | 0.610068 | 1_3:-48479329 | None:intergenic |
| ATTACACTCCAAATGCATGA+AGG | 0.610756 | 1_3:+48477145 | Msa0122130:CDS |
| ACAGTCTATGAACCTAGCCT+CGG | 0.617926 | 1_3:+48477661 | Msa0122130:CDS |
| CATAGACTGTTGAAGATGCA+GGG | 0.622353 | 1_3:-48477648 | None:intergenic |
| TCTAACACTGATATTGGACT+AGG | 0.624156 | 1_3:-48478697 | None:intergenic |
| ATCACCACATATAGAATCAG+TGG | 0.630942 | 1_3:+48479108 | Msa0122130:CDS |
| CACATATAGAATCAGTGGCT+AGG | 0.630949 | 1_3:+48479113 | Msa0122130:CDS |
| AATTACTTCAAGATGTGCAG+TGG | 0.633827 | 1_3:+48479496 | Msa0122130:CDS |
| GGAGGGAAGATGTTGATGAG+GGG | 0.637253 | 1_3:+48476642 | Msa0122130:CDS |
| ATTACTTCAAGATGTGCAGT+GGG | 0.638167 | 1_3:+48479497 | Msa0122130:CDS |
| ATTCTACACAATCTTTAGGG+CGG | 0.643315 | 1_3:+48477329 | Msa0122130:CDS |
| AAGCTATGTCACCAATGCCA+AGG | 0.643366 | 1_3:+48477269 | Msa0122130:CDS |
| TGCAATCTCAGAGAGGAAGG+TGG | 0.652012 | 1_3:+48476621 | Msa0122130:CDS |
| ATTAGGTGAACAGGGCCATG+TGG | 0.652945 | 1_3:-48480075 | None:intergenic |
| GAATGGAGATTGATGCTTTG+GGG | 0.655462 | 1_3:+48479701 | Msa0122130:CDS |
| ACATGTATGGTCATTTAGGG+TGG | 0.658765 | 1_3:+48476483 | Msa0122130:CDS |
| ACAAAGATGGATATGAAACA+TGG | 0.662592 | 1_3:+48476597 | Msa0122130:CDS |
| AATGGGATGAAGTTTGTTTG+GGG | 0.665298 | 1_3:+48479601 | Msa0122130:CDS |
| GTGTCTCAAAGCTTCAATGT+TGG | 0.674820 | 1_3:+48477904 | Msa0122130:CDS |
| ATGTGATTTGCATCATCCTG+TGG | 0.677544 | 1_3:-48476833 | None:intergenic |
| TGATGGAACTGATGTTTCGG+TGG | 0.677793 | 1_3:-48477851 | None:intergenic |
| AGTGTGATCATGTCCTCTTG+TGG | 0.683426 | 1_3:-48477976 | None:intergenic |
| GAGGGACATAAATGACAACA+AGG | 0.687568 | 1_3:+48479357 | Msa0122130:CDS |
| AGAGGACATGATCACACTAG+AGG | 0.690396 | 1_3:+48477981 | Msa0122130:CDS |
| AAAGAAATCTGCAACATCTG+TGG | 0.695639 | 1_3:+48477507 | Msa0122130:CDS |
| GATGATGCTCACAAAGAACA+TGG | 0.702506 | 1_3:+48477688 | Msa0122130:CDS |
| CAAAGAACATGGCTCCAAGG+TGG | 0.704136 | 1_3:+48477699 | Msa0122130:CDS |
| CTTTGCCTCTATGCACACCG+AGG | 0.706128 | 1_3:-48477371 | None:intergenic |
| ATGTTGTCAATAGCAGATCG+CGG | 0.710179 | 1_3:+48479809 | Msa0122130:three_prime_UTR |
| ACATGGATGCAATCTCAGAG+AGG | 0.725851 | 1_3:+48476614 | Msa0122130:CDS |
| TGTGAGCATCATCAACACCG+AGG | 0.796608 | 1_3:-48477678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTAATTTATGATTAT+AGG | - | chr1_3:48476225-48476244 | None:intergenic | 10.0% |
| !! | ATATATTAATTCCATTAATT+AGG | - | chr1_3:48478197-48478216 | None:intergenic | 10.0% |
| !!! | ATAAAACAAGTTTTTATCAA+GGG | - | chr1_3:48478386-48478405 | None:intergenic | 15.0% |
| !!! | TATAAAACAAGTTTTTATCA+AGG | - | chr1_3:48478387-48478406 | None:intergenic | 15.0% |
| !!! | TTTTATTATATATATCCACA+TGG | + | chr1_3:48480060-48480079 | Msa0122130:three_prime_UTR | 15.0% |
| !! | TCATCAAGATAGAAAAATAA+TGG | + | chr1_3:48476291-48476310 | Msa0122130:five_prime_UTR | 20.0% |
| !! | TAATGTAGTTGCTAAATTAA+TGG | + | chr1_3:48476388-48476407 | Msa0122130:CDS | 20.0% |
| !! | AATGTAGTTGCTAAATTAAT+GGG | + | chr1_3:48476389-48476408 | Msa0122130:CDS | 20.0% |
| !!! | CTTGATAATAATCTTTTGTT+TGG | - | chr1_3:48476463-48476482 | None:intergenic | 20.0% |
| !! | GAATAAAACTTTACATTCTT+CGG | + | chr1_3:48477186-48477205 | Msa0122130:CDS | 20.0% |
| !! | AGTAAGAAATCATCATTTAA+AGG | + | chr1_3:48477736-48477755 | Msa0122130:CDS | 20.0% |
| !! | GTAAGAAATCATCATTTAAA+GGG | + | chr1_3:48477737-48477756 | Msa0122130:CDS | 20.0% |
| !! | TCTTCTAGTGATATTTATTT+AGG | + | chr1_3:48478074-48478093 | Msa0122130:intron | 20.0% |
| !!! | ATAATGGTTAAGTTTGAAAT+AGG | - | chr1_3:48478101-48478120 | None:intergenic | 20.0% |
| !! | TTCAAACTTAACCATTATTT+AGG | + | chr1_3:48478103-48478122 | Msa0122130:intron | 20.0% |
| !! | AGATAAAAGATCCTAAATAA+TGG | - | chr1_3:48478117-48478136 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTGCTTATATTT+TGG | + | chr1_3:48478491-48478510 | Msa0122130:intron | 20.0% |
| !! | AAACAAATCAAAGATTTCAT+TGG | - | chr1_3:48478607-48478626 | None:intergenic | 20.0% |
| !! | TGCTATTAATTCATTCATTT+GGG | - | chr1_3:48479581-48479600 | None:intergenic | 20.0% |
| !!! | TTGCTATTAATTCATTCATT+TGG | - | chr1_3:48479582-48479601 | None:intergenic | 20.0% |
| !! | ATGAATGAATTAATAGCAAA+TGG | + | chr1_3:48479583-48479602 | Msa0122130:CDS | 20.0% |
| !! | TGAATGAATTAATAGCAAAT+GGG | + | chr1_3:48479584-48479603 | Msa0122130:CDS | 20.0% |
| !!! | TTTTTTCTTTGGACATTTCT+TGG | - | chr1_3:48476349-48476368 | None:intergenic | 25.0% |
| ! | AATTTAGCAACTACATTAGA+TGG | - | chr1_3:48476386-48476405 | None:intergenic | 25.0% |
| ! | ATGTAGTTGCTAAATTAATG+GGG | + | chr1_3:48476390-48476409 | Msa0122130:CDS | 25.0% |
| ! | GATTATTATCAAGACATGTA+TGG | + | chr1_3:48476470-48476489 | Msa0122130:CDS | 25.0% |
| ! | TGACAAATCATATCATGATT+TGG | + | chr1_3:48477246-48477265 | Msa0122130:CDS | 25.0% |
| ! | CTTATTCTACACAATCTTTA+GGG | + | chr1_3:48477326-48477345 | Msa0122130:CDS | 25.0% |
| !!! | ATGCTCATTTTTTCTTTGAA+AGG | - | chr1_3:48477589-48477608 | None:intergenic | 25.0% |
| !!! | AGATGAACTAGATTTTTTCT+TGG | - | chr1_3:48477803-48477822 | None:intergenic | 25.0% |
| ! | AACTCAAGATTTCACAATTA+TGG | - | chr1_3:48478153-48478172 | None:intergenic | 25.0% |
| ! | TATTACACCAAAAAAACTAG+AGG | - | chr1_3:48478340-48478359 | None:intergenic | 25.0% |
| ! | TCAAAGATTTCATTGGTATA+TGG | - | chr1_3:48478600-48478619 | None:intergenic | 25.0% |
| ! | TTCCAAATGAAAAACAAGAT+CGG | + | chr1_3:48478674-48478693 | Msa0122130:CDS | 25.0% |
| ! | TTTATCAAATAAGAGCTTCT+TGG | - | chr1_3:48478833-48478852 | None:intergenic | 25.0% |
| ! | TAGAAAGTAGCAAATAGTTA+AGG | - | chr1_3:48478859-48478878 | None:intergenic | 25.0% |
| !! | GTCAGACATTTTTAATGATT+TGG | - | chr1_3:48478934-48478953 | None:intergenic | 25.0% |
| ! | TAAAAATGTCTGACTTCTAT+CGG | + | chr1_3:48478940-48478959 | Msa0122130:intron | 25.0% |
| ! | TCAATTAAATTGGACTTCAT+CGG | - | chr1_3:48479085-48479104 | None:intergenic | 25.0% |
| !! | TGGTGATTTGTCAATTAAAT+TGG | - | chr1_3:48479095-48479114 | None:intergenic | 25.0% |
| ! | ACTAATAAATTAGGTGAACA+GGG | - | chr1_3:48480086-48480105 | None:intergenic | 25.0% |
| ! | TTTCGTAGCACTAATAAATT+AGG | - | chr1_3:48480095-48480114 | None:intergenic | 25.0% |
| TACAACTATTACAGACAACT+TGG | - | chr1_3:48476155-48476174 | None:intergenic | 30.0% | |
| ! | TCTATATGCATCTTGATGAT+AGG | - | chr1_3:48476321-48476340 | None:intergenic | 30.0% |
| CTTCTAATCACCGATAAATT+CGG | - | chr1_3:48476440-48476459 | None:intergenic | 30.0% | |
| AAGACATGTATGGTCATTTA+GGG | + | chr1_3:48476480-48476499 | Msa0122130:CDS | 30.0% | |
| !! | AGATAGGTTTATGATGGATA+AGG | + | chr1_3:48476529-48476548 | Msa0122130:CDS | 30.0% |
| !! | GATAGGTTTATGATGGATAA+GGG | + | chr1_3:48476530-48476549 | Msa0122130:CDS | 30.0% |
| ACAAAGATGGATATGAAACA+TGG | + | chr1_3:48476597-48476616 | Msa0122130:CDS | 30.0% | |
| ! | ATCAAACCTTTGAAGATGTT+CGG | + | chr1_3:48476863-48476882 | Msa0122130:CDS | 30.0% |
| AACAAATGATCTTAAGGCTT+TGG | + | chr1_3:48477036-48477055 | Msa0122130:CDS | 30.0% | |
| TTTCTCTGATAGAAACTTTG+AGG | - | chr1_3:48477082-48477101 | None:intergenic | 30.0% | |
| CAAAGTTTCTATCAGAGAAA+TGG | + | chr1_3:48477082-48477101 | Msa0122130:CDS | 30.0% | |
| !! | TATTCTTTTGATAGCTTCTC+AGG | - | chr1_3:48477171-48477190 | None:intergenic | 30.0% |
| CCTAAAGATTGTGTAGAATA+AGG | - | chr1_3:48477328-48477347 | None:intergenic | 30.0% | |
| CCTTATTCTACACAATCTTT+AGG | + | chr1_3:48477325-48477344 | Msa0122130:CDS | 30.0% | |
| AAAAAGGTCATCAAGAACAA+AGG | + | chr1_3:48477434-48477453 | Msa0122130:CDS | 30.0% | |
| TGTTGCAGATTTCTTTACAA+GGG | - | chr1_3:48477503-48477522 | None:intergenic | 30.0% | |
| ATGTTGCAGATTTCTTTACA+AGG | - | chr1_3:48477504-48477523 | None:intergenic | 30.0% | |
| ! | CAGATTTTCTTTGTTCTTCT+TGG | - | chr1_3:48477552-48477571 | None:intergenic | 30.0% |
| ATTCTCCTCAAAACAATTGT+GGG | + | chr1_3:48477614-48477633 | Msa0122130:CDS | 30.0% | |
| TCTCTTCTCTTCCTAATTAA+TGG | + | chr1_3:48478183-48478202 | Msa0122130:intron | 30.0% | |
| TAATATATCCTTCTGTGTGT+TGG | + | chr1_3:48478209-48478228 | Msa0122130:intron | 30.0% | |
| !!! | ACAATCTCCTCTAGTTTTTT+TGG | + | chr1_3:48478330-48478349 | Msa0122130:intron | 30.0% |
| !!! | AGTTTTTATCAAGGGCATTT+TGG | - | chr1_3:48478378-48478397 | None:intergenic | 30.0% |
| ! | ACAAAATGTTTGGAGTTTGA+TGG | - | chr1_3:48478518-48478537 | None:intergenic | 30.0% |
| ACTAAAAAACCCTATGTTTG+TGG | - | chr1_3:48478563-48478582 | None:intergenic | 30.0% | |
| !! | TGTTTTTCATTTGGAATCTC+TGG | - | chr1_3:48478670-48478689 | None:intergenic | 30.0% |
| GCTGTATTGTAATCTTCAAA+TGG | - | chr1_3:48478727-48478746 | None:intergenic | 30.0% | |
| AAAGACACTGATAAAGAAAG+AGG | - | chr1_3:48478805-48478824 | None:intergenic | 30.0% | |
| GTCACTCGGATAATAATAAT+AGG | - | chr1_3:48479032-48479051 | None:intergenic | 30.0% | |
| !!! | GACACTTGTTTTGTATGTAT+AGG | + | chr1_3:48479049-48479068 | Msa0122130:intron | 30.0% |
| ! | TTTTGTATGTATAGGATCAC+TGG | + | chr1_3:48479057-48479076 | Msa0122130:intron | 30.0% |
| !! | AGAGGTTTTAATGGATAGTA+AGG | - | chr1_3:48479181-48479200 | None:intergenic | 30.0% |
| ACTATCCATTAAAACCTCTA+AGG | + | chr1_3:48479182-48479201 | Msa0122130:CDS | 30.0% | |
| ! | AAATGGGATGAAGTTTGTTT+GGG | + | chr1_3:48479600-48479619 | Msa0122130:CDS | 30.0% |
| ! | TAACAACATTTTCTACAACC+AGG | - | chr1_3:48479642-48479661 | None:intergenic | 30.0% |
| TGGTTGTAGAAAATGTTGTT+AGG | + | chr1_3:48479641-48479660 | Msa0122130:CDS | 30.0% | |
| AGAAAATGTTGTTAGGAAAG+AGG | + | chr1_3:48479648-48479667 | Msa0122130:CDS | 30.0% | |
| !! | TATGAAGTGTTGTGAAATAG+TGG | - | chr1_3:48479898-48479917 | None:intergenic | 30.0% |
| CACTAATAAATTAGGTGAAC+AGG | - | chr1_3:48480087-48480106 | None:intergenic | 30.0% | |
| !! | AGAAGCATTATGTTACCAGT+TGG | + | chr1_3:48476094-48476113 | Msa0122130:five_prime_UTR | 35.0% |
| !!! | GTGCTTGGAGTTTTTTTCTT+TGG | - | chr1_3:48476360-48476379 | None:intergenic | 35.0% |
| AAAAGGAGAGCCGAATTTAT+CGG | + | chr1_3:48476427-48476446 | Msa0122130:CDS | 35.0% | |
| CAAGACATGTATGGTCATTT+AGG | + | chr1_3:48476479-48476498 | Msa0122130:CDS | 35.0% | |
| TCCACTTTCCAATGTTTCAA+TGG | - | chr1_3:48476509-48476528 | None:intergenic | 35.0% | |
| AACATTGGAAAGTGGAAGAT+AGG | + | chr1_3:48476513-48476532 | Msa0122130:CDS | 35.0% | |
| AGTGGAAGATAGGTTTATGA+TGG | + | chr1_3:48476523-48476542 | Msa0122130:CDS | 35.0% | |
| !! | GAACAGGTTGATTACAAAGA+TGG | + | chr1_3:48476584-48476603 | Msa0122130:CDS | 35.0% |
| CATCTTCAAATTGCTTCGAT+TGG | - | chr1_3:48476733-48476752 | None:intergenic | 35.0% | |
| GAAGCAATTTGAAGATGCAT+TGG | + | chr1_3:48476736-48476755 | Msa0122130:CDS | 35.0% | |
| AAGCTCAAACAATGAACTCT+TGG | + | chr1_3:48476766-48476785 | Msa0122130:CDS | 35.0% | |
| ! | TTCTGGAAAGAGTAAGAAGA+AGG | + | chr1_3:48476898-48476917 | Msa0122130:CDS | 35.0% |
| GAAAGAGTAAGAAGAAGGAT+AGG | + | chr1_3:48476903-48476922 | Msa0122130:CDS | 35.0% | |
| ! | GCTGCTTGATCATAATTTTC+TGG | - | chr1_3:48476941-48476960 | None:intergenic | 35.0% |
| ATTATGATCAAGCAGCTGTA+TGG | + | chr1_3:48476945-48476964 | Msa0122130:CDS | 35.0% | |
| TTATGATCAAGCAGCTGTAT+GGG | + | chr1_3:48476946-48476965 | Msa0122130:CDS | 35.0% | |
| TTAAGATCATTTGTTCTCCC+AGG | - | chr1_3:48477031-48477050 | None:intergenic | 35.0% | |
| TGGGAGAACAAATGATCTTA+AGG | + | chr1_3:48477030-48477049 | Msa0122130:CDS | 35.0% | |
| TGTACTTGAATCCATAGAAG+TGG | + | chr1_3:48477114-48477133 | Msa0122130:CDS | 35.0% | |
| AATCTCTTTAGCCACTTCTA+TGG | - | chr1_3:48477128-48477147 | None:intergenic | 35.0% | |
| ATTACACTCCAAATGCATGA+AGG | + | chr1_3:48477145-48477164 | Msa0122130:CDS | 35.0% | |
| ! | ATTCTACACAATCTTTAGGG+CGG | + | chr1_3:48477329-48477348 | Msa0122130:CDS | 35.0% |
| ! | AGAAACGACTTTCTGAAAGA+TGG | + | chr1_3:48477392-48477411 | Msa0122130:CDS | 35.0% |
| GTCATGACATCTAACGAAAA+AGG | + | chr1_3:48477418-48477437 | Msa0122130:CDS | 35.0% | |
| AAAGAAATCTGCAACATCTG+TGG | + | chr1_3:48477507-48477526 | Msa0122130:CDS | 35.0% | |
| GATTCTCCTCAAAACAATTG+TGG | + | chr1_3:48477613-48477632 | Msa0122130:CDS | 35.0% | |
| TACTGATGGAACTGATGTTT+CGG | - | chr1_3:48477857-48477876 | None:intergenic | 35.0% | |
| GTTCCATCAGTAAATTCATC+TGG | + | chr1_3:48477865-48477884 | Msa0122130:CDS | 35.0% | |
| ACTCCAGATGAATTTACTGA+TGG | - | chr1_3:48477871-48477890 | None:intergenic | 35.0% | |
| ! | TTTGAGACACATTATCTCCA+AGG | - | chr1_3:48477894-48477913 | None:intergenic | 35.0% |
| ! | ACTTTTCTTAGTCAGCACAT+TGG | + | chr1_3:48478299-48478318 | Msa0122130:intron | 35.0% |
| ! | CAAACTCCAAACATTTTGTG+TGG | + | chr1_3:48478519-48478538 | Msa0122130:intron | 35.0% |
| TTCAGACCACACAAAATGTT+TGG | - | chr1_3:48478528-48478547 | None:intergenic | 35.0% | |
| TACAGACTTCCACAAACATA+GGG | + | chr1_3:48478551-48478570 | Msa0122130:intron | 35.0% | |
| !! | ATTTGTTTGTTTTCACAGCC+TGG | + | chr1_3:48478619-48478638 | Msa0122130:intron | 35.0% |
| TCTAACACTGATATTGGACT+AGG | - | chr1_3:48478700-48478719 | None:intergenic | 35.0% | |
| GGAGATTCTAACACTGATAT+TGG | - | chr1_3:48478706-48478725 | None:intergenic | 35.0% | |
| ! | TGGTCACATTGGTAATACTT+AGG | + | chr1_3:48478774-48478793 | Msa0122130:intron | 35.0% |
| CACTGATAAAGAAAGAGGTA+AGG | - | chr1_3:48478800-48478819 | None:intergenic | 35.0% | |
| CAAATAAGAGCTTCTTGGAA+TGG | - | chr1_3:48478828-48478847 | None:intergenic | 35.0% | |
| TCCAAAGTCACATGTATGAT+TGG | + | chr1_3:48478970-48478989 | Msa0122130:intron | 35.0% | |
| ACCAATCATACATGTGACTT+TGG | - | chr1_3:48478974-48478993 | None:intergenic | 35.0% | |
| ! | CATACAAAACAAGTGTCACT+CGG | - | chr1_3:48479046-48479065 | None:intergenic | 35.0% |
| ATCACCACATATAGAATCAG+TGG | + | chr1_3:48479108-48479127 | Msa0122130:CDS | 35.0% | |
| AGAATCTTCATCCCATGATA+GGG | - | chr1_3:48479140-48479159 | None:intergenic | 35.0% | |
| AAGAATCTTCATCCCATGAT+AGG | - | chr1_3:48479141-48479160 | None:intergenic | 35.0% | |
| !! | CAAGTCCTTAGAGGTTTTAA+TGG | - | chr1_3:48479190-48479209 | None:intergenic | 35.0% |
| TTCCTTAGACACTAAGTTAG+AGG | + | chr1_3:48479210-48479229 | Msa0122130:CDS | 35.0% | |
| ATCCTCTAACTTAGTGTCTA+AGG | - | chr1_3:48479215-48479234 | None:intergenic | 35.0% | |
| ! | CAGATGCTGATAGTAGTTTT+TGG | - | chr1_3:48479258-48479277 | None:intergenic | 35.0% |
| CAAAAACTACTATCAGCATC+TGG | + | chr1_3:48479256-48479275 | Msa0122130:CDS | 35.0% | |
| ATGACTCATTTCACACAAGA+TGG | + | chr1_3:48479302-48479321 | Msa0122130:CDS | 35.0% | |
| CATTTATGTCCCTCAATGAT+GGG | - | chr1_3:48479351-48479370 | None:intergenic | 35.0% | |
| TCATTTATGTCCCTCAATGA+TGG | - | chr1_3:48479352-48479371 | None:intergenic | 35.0% | |
| TTGTGTTAATGCTGCACTAT+TGG | + | chr1_3:48479447-48479466 | Msa0122130:CDS | 35.0% | |
| AATTACTTCAAGATGTGCAG+TGG | + | chr1_3:48479496-48479515 | Msa0122130:CDS | 35.0% | |
| ATTACTTCAAGATGTGCAGT+GGG | + | chr1_3:48479497-48479516 | Msa0122130:CDS | 35.0% | |
| TCAAGAGGGTTCATGTTTAA+TGG | + | chr1_3:48479543-48479562 | Msa0122130:CDS | 35.0% | |
| ! | ATGTTTAATGGACCACATTG+TGG | + | chr1_3:48479555-48479574 | Msa0122130:CDS | 35.0% |
| ! | CAAATGGGATGAAGTTTGTT+TGG | + | chr1_3:48479599-48479618 | Msa0122130:CDS | 35.0% |
| ! | AATGGGATGAAGTTTGTTTG+GGG | + | chr1_3:48479601-48479620 | Msa0122130:CDS | 35.0% |
| AGAATGGAGATTGATGCTTT+GGG | + | chr1_3:48479700-48479719 | Msa0122130:CDS | 35.0% | |
| ! | AATCTTGTGCTCGATTTTAC+AGG | + | chr1_3:48479763-48479782 | Msa0122130:CDS | 35.0% |
| TTGTGAAATAGTGGCTATAG+TGG | - | chr1_3:48479889-48479908 | None:intergenic | 35.0% | |
| ! | AAACGAGTGTTGTCAAATAG+TGG | - | chr1_3:48479983-48480002 | None:intergenic | 35.0% |
| AGCATTATGTTACCAGTTGG+AGG | + | chr1_3:48476097-48476116 | Msa0122130:five_prime_UTR | 40.0% | |
| ACAATTCAGAAACCTCCAAC+TGG | - | chr1_3:48476112-48476131 | None:intergenic | 40.0% | |
| TTGAAAGTGAAGAAGCTGCA+TGG | - | chr1_3:48476263-48476282 | None:intergenic | 40.0% | |
| !! | TACATTAGATGGACTGTGCT+TGG | - | chr1_3:48476375-48476394 | None:intergenic | 40.0% |
| !! | ATTCGGCTCTCCTTTTGAAA+GGG | - | chr1_3:48476423-48476442 | None:intergenic | 40.0% |
| ! | AATTCGGCTCTCCTTTTGAA+AGG | - | chr1_3:48476424-48476443 | None:intergenic | 40.0% |
| ACATGTATGGTCATTTAGGG+TGG | + | chr1_3:48476483-48476502 | Msa0122130:CDS | 40.0% | |
| GCCATTGAAACATTGGAAAG+TGG | + | chr1_3:48476505-48476524 | Msa0122130:CDS | 40.0% | |
| TAATCAACCTGTTCTGTGCT+TGG | - | chr1_3:48476578-48476597 | None:intergenic | 40.0% | |
| CAAACAATGAACTCTTGGTC+AGG | + | chr1_3:48476771-48476790 | Msa0122130:CDS | 40.0% | |
| ! | ATGTGATTTGCATCATCCTG+TGG | - | chr1_3:48476836-48476855 | None:intergenic | 40.0% |
| TCATTGCCGAACATCTTCAA+AGG | - | chr1_3:48476872-48476891 | None:intergenic | 40.0% | |
| TTCGGCAATGACAAATCTTC+TGG | + | chr1_3:48476881-48476900 | Msa0122130:CDS | 40.0% | |
| GTATGGGAGAACAGGAATTA+TGG | + | chr1_3:48476962-48476981 | Msa0122130:CDS | 40.0% | |
| CAGGAATTATGGATACTCTC+CGG | + | chr1_3:48476973-48476992 | Msa0122130:CDS | 40.0% | |
| ACCACTATTCGAGTAGATTC+CGG | - | chr1_3:48476995-48477014 | None:intergenic | 40.0% | |
| !! | TGATAGAAACTTTGAGGCGA+TGG | - | chr1_3:48477076-48477095 | None:intergenic | 40.0% |
| GTCAAATGAGTTCTCATCAC+TGG | - | chr1_3:48477230-48477249 | None:intergenic | 40.0% | |
| AATAAGGACTGCCACATACA+TGG | - | chr1_3:48477312-48477331 | None:intergenic | 40.0% | |
| !! | TTCTACACAATCTTTAGGGC+GGG | + | chr1_3:48477330-48477349 | Msa0122130:CDS | 40.0% |
| TGTGTCGAGAAACTCTACTT+TGG | + | chr1_3:48477459-48477478 | Msa0122130:CDS | 40.0% | |
| GTGTCGAGAAACTCTACTTT+GGG | + | chr1_3:48477460-48477479 | Msa0122130:CDS | 40.0% | |
| !! | TTCGACCCACAATTGTTTTG+AGG | - | chr1_3:48477622-48477641 | None:intergenic | 40.0% |
| CATAGACTGTTGAAGATGCA+GGG | - | chr1_3:48477651-48477670 | None:intergenic | 40.0% | |
| TCATAGACTGTTGAAGATGC+AGG | - | chr1_3:48477652-48477671 | None:intergenic | 40.0% | |
| GATGATGCTCACAAAGAACA+TGG | + | chr1_3:48477688-48477707 | Msa0122130:CDS | 40.0% | |
| !!! | CTTTGACTTTTTCACCACCT+TGG | - | chr1_3:48477716-48477735 | None:intergenic | 40.0% |
| TGTTTCGGTGGCAATAGTTT+CGG | - | chr1_3:48477842-48477861 | None:intergenic | 40.0% | |
| ! | GTAAATTCATCTGGAGTCCT+TGG | + | chr1_3:48477874-48477893 | Msa0122130:CDS | 40.0% |
| GTGTCTCAAAGCTTCAATGT+TGG | + | chr1_3:48477904-48477923 | Msa0122130:CDS | 40.0% | |
| TCTCAAAGCTTCAATGTTGG+TGG | + | chr1_3:48477907-48477926 | Msa0122130:CDS | 40.0% | |
| TAGGAAGAGAAGAGACAGAT+AGG | - | chr1_3:48478178-48478197 | None:intergenic | 40.0% | |
| TATCCTTCTGTGTGTTGGAA+TGG | + | chr1_3:48478214-48478233 | Msa0122130:intron | 40.0% | |
| ACTAGAGGAGATTGTCTACT+AGG | - | chr1_3:48478325-48478344 | None:intergenic | 40.0% | |
| CTACAGACTTCCACAAACAT+AGG | + | chr1_3:48478550-48478569 | Msa0122130:intron | 40.0% | |
| !!! | GGCCGATCTTGTTTTTCATT+TGG | - | chr1_3:48478679-48478698 | None:intergenic | 40.0% |
| CAATACAGCTCATGAATCCT+TGG | + | chr1_3:48478738-48478757 | Msa0122130:CDS | 40.0% | |
| !! | CTAGCCACTGATTCTATATG+TGG | - | chr1_3:48479115-48479134 | None:intergenic | 40.0% |
| CACATATAGAATCAGTGGCT+AGG | + | chr1_3:48479113-48479132 | Msa0122130:CDS | 40.0% | |
| TCATGGGATGAAGATTCTTG+TGG | + | chr1_3:48479142-48479161 | Msa0122130:CDS | 40.0% | |
| TCTAAGGAACAAGTCCTTAG+AGG | - | chr1_3:48479199-48479218 | None:intergenic | 40.0% | |
| GAGGGACATAAATGACAACA+AGG | + | chr1_3:48479357-48479376 | Msa0122130:CDS | 40.0% | |
| ! | TGACCTCATTTTCCTTCTCT+TGG | - | chr1_3:48479407-48479426 | None:intergenic | 40.0% |
| ! | TTGGAAGTTGTTGGCTATGA+TGG | + | chr1_3:48479466-48479485 | Msa0122130:CDS | 40.0% |
| AACAAAGAAGGACCTTCTGT+GGG | - | chr1_3:48479524-48479543 | None:intergenic | 40.0% | |
| AAGGTCCTTCTTTGTTCAAG+AGG | + | chr1_3:48479528-48479547 | Msa0122130:CDS | 40.0% | |
| AGGTCCTTCTTTGTTCAAGA+GGG | + | chr1_3:48479529-48479548 | Msa0122130:CDS | 40.0% | |
| TGAACCCTCTTGAACAAAGA+AGG | - | chr1_3:48479536-48479555 | None:intergenic | 40.0% | |
| GTTGGTTGAGGTTATGAGAA+TGG | + | chr1_3:48479684-48479703 | Msa0122130:CDS | 40.0% | |
| GAGAATGGAGATTGATGCTT+TGG | + | chr1_3:48479699-48479718 | Msa0122130:CDS | 40.0% | |
| GAATGGAGATTGATGCTTTG+GGG | + | chr1_3:48479701-48479720 | Msa0122130:CDS | 40.0% | |
| ATGTTGTCAATAGCAGATCG+CGG | + | chr1_3:48479809-48479828 | Msa0122130:three_prime_UTR | 40.0% | |
| ! | GCATCGATGTATAGCAGAAT+TGG | - | chr1_3:48479956-48479975 | None:intergenic | 40.0% |
| AGAGAGAGAGAGAGAGAGAT+GGG | - | chr1_3:48476009-48476028 | None:intergenic | 45.0% | |
| GAAGAAGCTGCATGGCAATT+AGG | - | chr1_3:48476255-48476274 | None:intergenic | 45.0% | |
| GGGCTTGAAACCCTTTCAAA+AGG | + | chr1_3:48476410-48476429 | Msa0122130:CDS | 45.0% | |
| TAGGGTGGCCATTGAAACAT+TGG | + | chr1_3:48476498-48476517 | Msa0122130:CDS | 45.0% | |
| TCATCATCCAAGCACAGAAC+AGG | + | chr1_3:48476568-48476587 | Msa0122130:CDS | 45.0% | |
| ACATGGATGCAATCTCAGAG+AGG | + | chr1_3:48476614-48476633 | Msa0122130:CDS | 45.0% | |
| ! | TGGAGGGAAGATGTTGATGA+GGG | + | chr1_3:48476641-48476660 | Msa0122130:CDS | 45.0% |
| ! | AGATGTTGATGAGGGGAAGA+TGG | + | chr1_3:48476649-48476668 | Msa0122130:CDS | 45.0% |
| TCAAATTCCCTCTACTCCAC+AGG | + | chr1_3:48476817-48476836 | Msa0122130:CDS | 45.0% | |
| TCCGGAATCTACTCGAATAG+TGG | + | chr1_3:48476991-48477010 | Msa0122130:CDS | 45.0% | |
| ! | TGGTATTGAAGCCTAGTCCT+GGG | + | chr1_3:48477011-48477030 | Msa0122130:CDS | 45.0% |
| TCATTTGTTCTCCCAGGACT+AGG | - | chr1_3:48477025-48477044 | None:intergenic | 45.0% | |
| !! | CTTTGAGGCGATGGATTTGT+TGG | - | chr1_3:48477067-48477086 | None:intergenic | 45.0% |
| TTCTCAGGCCTTCATGCATT+TGG | - | chr1_3:48477156-48477175 | None:intergenic | 45.0% | |
| CATTCTTCGGTATTCTCCAG+TGG | + | chr1_3:48477199-48477218 | Msa0122130:CDS | 45.0% | |
| AAGCTATGTCACCAATGCCA+AGG | + | chr1_3:48477269-48477288 | Msa0122130:CDS | 45.0% | |
| ! | ACCAATGCCAAGGCATTCTT+GGG | + | chr1_3:48477279-48477298 | Msa0122130:CDS | 45.0% |
| ATGCAATCCCAAGAATGCCT+TGG | - | chr1_3:48477289-48477308 | None:intergenic | 45.0% | |
| TGGGATTGCATCCATGTATG+TGG | + | chr1_3:48477298-48477317 | Msa0122130:CDS | 45.0% | |
| ACAGTCTATGAACCTAGCCT+CGG | + | chr1_3:48477661-48477680 | Msa0122130:CDS | 45.0% | |
| TCACAAAGAACATGGCTCCA+AGG | + | chr1_3:48477696-48477715 | Msa0122130:CDS | 45.0% | |
| TGATGGAACTGATGTTTCGG+TGG | - | chr1_3:48477854-48477873 | None:intergenic | 45.0% | |
| AGTCTCTAGTGAACCACAAG+AGG | + | chr1_3:48477963-48477982 | Msa0122130:CDS | 45.0% | |
| AGTGTGATCATGTCCTCTTG+TGG | - | chr1_3:48477979-48477998 | None:intergenic | 45.0% | |
| AGAGGACATGATCACACTAG+AGG | + | chr1_3:48477981-48478000 | Msa0122130:CDS | 45.0% | |
| TCACCATTCCAACACACAGA+AGG | - | chr1_3:48478220-48478239 | None:intergenic | 45.0% | |
| ACTGAATGAGTCAAAGCCCT+TGG | + | chr1_3:48478642-48478661 | Msa0122130:CDS | 45.0% | |
| ! | TTTGGAATCTCTGGCACCAA+GGG | - | chr1_3:48478661-48478680 | None:intergenic | 45.0% |
| ! | ATTTGGAATCTCTGGCACCA+AGG | - | chr1_3:48478662-48478681 | None:intergenic | 45.0% |
| TCCTTGGAATGCACGAAAGA+TGG | + | chr1_3:48478754-48478773 | Msa0122130:CDS | 45.0% | |
| ACCATCTTTCGTGCATTCCA+AGG | - | chr1_3:48478758-48478777 | None:intergenic | 45.0% | |
| TGCACGAAAGATGGTCACAT+TGG | + | chr1_3:48478763-48478782 | Msa0122130:CDS | 45.0% | |
| GTATTCCCTTGAAAGCCCAT+TGG | + | chr1_3:48479324-48479343 | Msa0122130:CDS | 45.0% | |
| CTGTACTCAGCCTCTTAATG+AGG | + | chr1_3:48479381-48479400 | Msa0122130:CDS | 45.0% | |
| CTTCTCTTGGCCTCATTAAG+AGG | - | chr1_3:48479394-48479413 | None:intergenic | 45.0% | |
| CTCTTAATGAGGCCAAGAGA+AGG | + | chr1_3:48479392-48479411 | Msa0122130:CDS | 45.0% | |
| AGGCCAAGAGAAGGAAAATG+AGG | + | chr1_3:48479401-48479420 | Msa0122130:CDS | 45.0% | |
| GCTGCACTATTGGAAGTTGT+TGG | + | chr1_3:48479457-48479476 | Msa0122130:CDS | 45.0% | |
| GAACAAAGAAGGACCTTCTG+TGG | - | chr1_3:48479525-48479544 | None:intergenic | 45.0% | |
| CATTCATTTGGGCCACAATG+TGG | - | chr1_3:48479570-48479589 | None:intergenic | 45.0% | |
| ! | GGATGAAGTTTGTTTGGGGT+GGG | + | chr1_3:48479605-48479624 | Msa0122130:CDS | 45.0% |
| ! | GATGAAGTTTGTTTGGGGTG+GGG | + | chr1_3:48479606-48479625 | Msa0122130:CDS | 45.0% |
| ! | TTTTACAGGCAGATGAGACG+AGG | + | chr1_3:48479777-48479796 | Msa0122130:exon | 45.0% |
| TTTACAGGCAGATGAGACGA+GGG | + | chr1_3:48479778-48479797 | Msa0122130:exon | 45.0% | |
| AGAGAGAGAGAGAGAGATGG+GGG | - | chr1_3:48476007-48476026 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGATG+GGG | - | chr1_3:48476008-48476027 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr1_3:48476010-48476029 | None:intergenic | 50.0% | |
| GGATGCAATCTCAGAGAGGA+AGG | + | chr1_3:48476618-48476637 | Msa0122130:CDS | 50.0% | |
| TGCAATCTCAGAGAGGAAGG+TGG | + | chr1_3:48476621-48476640 | Msa0122130:CDS | 50.0% | |
| AATCTCAGAGAGGAAGGTGG+AGG | + | chr1_3:48476624-48476643 | Msa0122130:CDS | 50.0% | |
| ATCTCAGAGAGGAAGGTGGA+GGG | + | chr1_3:48476625-48476644 | Msa0122130:CDS | 50.0% | |
| GTGGAGGGAAGATGTTGATG+AGG | + | chr1_3:48476640-48476659 | Msa0122130:CDS | 50.0% | |
| ! | GGAGGGAAGATGTTGATGAG+GGG | + | chr1_3:48476642-48476661 | Msa0122130:CDS | 50.0% |
| GCATCATCCTGTGGAGTAGA+GGG | - | chr1_3:48476827-48476846 | None:intergenic | 50.0% | |
| TGCATCATCCTGTGGAGTAG+AGG | - | chr1_3:48476828-48476847 | None:intergenic | 50.0% | |
| AAGCAGCTGTATGGGAGAAC+AGG | + | chr1_3:48476954-48476973 | Msa0122130:CDS | 50.0% | |
| ! | GTGGTATTGAAGCCTAGTCC+TGG | + | chr1_3:48477010-48477029 | Msa0122130:CDS | 50.0% |
| CTCATCACTGGAATAGCCAC+TGG | - | chr1_3:48477218-48477237 | None:intergenic | 50.0% | |
| ! | CACCAATGCCAAGGCATTCT+TGG | + | chr1_3:48477278-48477297 | Msa0122130:CDS | 50.0% |
| TCCCAAGAATGCCTTGGCAT+TGG | - | chr1_3:48477283-48477302 | None:intergenic | 50.0% | |
| AACGTGTTCTCCTGAGTCCT+CGG | + | chr1_3:48477354-48477373 | Msa0122130:CDS | 50.0% | |
| ACTGTTGAAGATGCAGGGTC+AGG | - | chr1_3:48477646-48477665 | None:intergenic | 50.0% | |
| TGTGAGCATCATCAACACCG+AGG | - | chr1_3:48477681-48477700 | None:intergenic | 50.0% | |
| CAAAGAACATGGCTCCAAGG+TGG | + | chr1_3:48477699-48477718 | Msa0122130:CDS | 50.0% | |
| ! | GGCTTTGACTCATTCAGTCC+AGG | - | chr1_3:48478640-48478659 | None:intergenic | 50.0% |
| AGTGGCTAGGACCCTATCAT+GGG | + | chr1_3:48479126-48479145 | Msa0122130:CDS | 50.0% | |
| ! | TGGGTCCAATGGGCTTTCAA+GGG | - | chr1_3:48479332-48479351 | None:intergenic | 50.0% |
| ! | ATGGGTCCAATGGGCTTTCA+AGG | - | chr1_3:48479333-48479352 | None:intergenic | 50.0% |
| !! | CCCTCAATGATGGGTCCAAT+GGG | - | chr1_3:48479342-48479361 | None:intergenic | 50.0% |
| CCCATTGGACCCATCATTGA+GGG | + | chr1_3:48479339-48479358 | Msa0122130:CDS | 50.0% | |
| !! | TCCCTCAATGATGGGTCCAA+TGG | - | chr1_3:48479343-48479362 | None:intergenic | 50.0% |
| ! | GGGATGAAGTTTGTTTGGGG+TGG | + | chr1_3:48479604-48479623 | Msa0122130:CDS | 50.0% |
| AGGAAAGAGGTTGTGCAGAG+TGG | + | chr1_3:48479661-48479680 | Msa0122130:CDS | 50.0% | |
| GGAAAGAGGTTGTGCAGAGT+GGG | + | chr1_3:48479662-48479681 | Msa0122130:CDS | 50.0% | |
| !! | TGGAGATTGATGCTTTGGGG+AGG | + | chr1_3:48479704-48479723 | Msa0122130:CDS | 50.0% |
| !! | GGAGATTGATGCTTTGGGGA+GGG | + | chr1_3:48479705-48479724 | Msa0122130:CDS | 50.0% |
| !! | GCTTTGGGGAGGGAAATAGA+AGG | + | chr1_3:48479715-48479734 | Msa0122130:CDS | 50.0% |
| ATTAGGTGAACAGGGCCATG+TGG | - | chr1_3:48480078-48480097 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGATGGG+GGG | - | chr1_3:48476006-48476025 | None:intergenic | 55.0% | |
| TCTATGCACACCGAGGACTC+AGG | - | chr1_3:48477367-48477386 | None:intergenic | 55.0% | |
| ! | TGAGTCCTCGGTGTGCATAG+AGG | + | chr1_3:48477366-48477385 | Msa0122130:CDS | 55.0% |
| CTTTGCCTCTATGCACACCG+AGG | - | chr1_3:48477374-48477393 | None:intergenic | 55.0% | |
| GCATCATCAACACCGAGGCT+AGG | - | chr1_3:48477676-48477695 | None:intergenic | 55.0% | |
| CAGTGGCTAGGACCCTATCA+TGG | + | chr1_3:48479125-48479144 | Msa0122130:CDS | 55.0% | |
| GCCCATTGGACCCATCATTG+AGG | + | chr1_3:48479338-48479357 | Msa0122130:CDS | 55.0% | |
| AGAGGTTGTGCAGAGTGGGT+TGG | + | chr1_3:48479666-48479685 | Msa0122130:CDS | 55.0% | |
| !! | TGTGCAGAGTGGGTTGGTTG+AGG | + | chr1_3:48479672-48479691 | Msa0122130:CDS | 55.0% |
| TGTGCAGTGGGACCCACAGA+AGG | + | chr1_3:48479509-48479528 | Msa0122130:CDS | 60.0% | |
| GGGTGGGGACAGTCACAGCC+TGG | + | chr1_3:48479621-48479640 | Msa0122130:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 48475978 | 48480175 | 48475978 | ID=Msa0122130;Name=Msa0122130 |
| chr1_3 | mRNA | 48475978 | 48480175 | 48475978 | ID=Msa0122130-mRNA-1;Parent=Msa0122130;Name=Msa0122130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=226|1|1|1|0.66|0.5|4|383|839 |
| chr1_3 | exon | 48475978 | 48476118 | 48475978 | ID=Msa0122130-mRNA-1:exon:14593;Parent=Msa0122130-mRNA-1 |
| chr1_3 | exon | 48476268 | 48478002 | 48476268 | ID=Msa0122130-mRNA-1:exon:14594;Parent=Msa0122130-mRNA-1 |
| chr1_3 | exon | 48478637 | 48478784 | 48478637 | ID=Msa0122130-mRNA-1:exon:14595;Parent=Msa0122130-mRNA-1 |
| chr1_3 | exon | 48479071 | 48480175 | 48479071 | ID=Msa0122130-mRNA-1:exon:14596;Parent=Msa0122130-mRNA-1 |
| chr1_3 | five_prime_UTR | 48475978 | 48476118 | 48475978 | ID=Msa0122130-mRNA-1:five_prime_utr;Parent=Msa0122130-mRNA-1 |
| chr1_3 | five_prime_UTR | 48476268 | 48476352 | 48476268 | ID=Msa0122130-mRNA-1:five_prime_utr;Parent=Msa0122130-mRNA-1 |
| chr1_3 | CDS | 48476353 | 48478002 | 48476353 | ID=Msa0122130-mRNA-1:cds;Parent=Msa0122130-mRNA-1 |
| chr1_3 | CDS | 48478637 | 48478784 | 48478637 | ID=Msa0122130-mRNA-1:cds;Parent=Msa0122130-mRNA-1 |
| chr1_3 | CDS | 48479071 | 48479792 | 48479071 | ID=Msa0122130-mRNA-1:cds;Parent=Msa0122130-mRNA-1 |
| chr1_3 | three_prime_UTR | 48479793 | 48480175 | 48479793 | ID=Msa0122130-mRNA-1:three_prime_utr;Parent=Msa0122130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
