Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026970 | Msa0122130 | 0.978781 | 1.502872e-146 | -8.615850e-47 |
| Msa0026970 | Msa1272440 | 0.809151 | 2.180520e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026970 | MtrunA17_Chr1g0182831 | 94.425 | 843 | 41 | 2 | 1 | 839 | 1 | 841 | 0.0 | 1526 |
| Msa0026970 | MtrunA17_Chr7g0262631 | 56.887 | 893 | 317 | 23 | 1 | 839 | 103 | 981 | 0.0 | 820 |
| Msa0026970 | MtrunA17_Chr1g0182111 | 28.438 | 429 | 227 | 18 | 1 | 382 | 73 | 468 | 5.72e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026970 | AT4G28760.2 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 3.81e-117 | 378 |
| Msa0026970 | AT4G28760.1 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 3.81e-117 | 378 |
| Msa0026970 | AT5G43880.3 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.31e-86 | 293 |
| Msa0026970 | AT5G43880.2 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.31e-86 | 293 |
| Msa0026970 | AT5G43880.4 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.31e-86 | 293 |
| Msa0026970 | AT5G43880.1 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.31e-86 | 293 |
| Msa0026970 | AT2G20240.1 | 33.333 | 780 | 341 | 26 | 87 | 836 | 82 | 712 | 1.08e-83 | 283 |
| Msa0026970 | AT3G53540.1 | 34.884 | 172 | 88 | 5 | 1 | 162 | 72 | 229 | 4.03e-15 | 80.5 |
| Msa0026970 | AT3G53540.2 | 34.884 | 172 | 88 | 5 | 1 | 162 | 103 | 260 | 4.21e-15 | 80.5 |
Find 212 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGACATGTATGGTCATTT+AGG | 0.154963 | 1_1:-51172027 | Msa0026970:CDS |
| CCTTATTCTACACAATCTTT+AGG | 0.208775 | 1_1:-51171181 | Msa0026970:CDS |
| TTTCGTAGCACTAATAAATT+AGG | 0.209995 | 1_1:+51168414 | None:intergenic |
| TCAAGAGGGTTCATGTTTAA+TGG | 0.218673 | 1_1:-51168963 | Msa0026970:CDS |
| TAATGTAGTTGCTAAATTAA+TGG | 0.232485 | 1_1:-51172118 | Msa0026970:CDS |
| TGGTGATTTGTCAATTAAAT+TGG | 0.255525 | 1_1:+51169414 | None:intergenic |
| TTGCTATTAATTCATTCATT+TGG | 0.255927 | 1_1:+51168927 | None:intergenic |
| AATGTAGTTGCTAAATTAAT+GGG | 0.258803 | 1_1:-51172117 | Msa0026970:CDS |
| TTCCTTAGACACTAAGTTAG+AGG | 0.280175 | 1_1:-51169296 | Msa0026970:CDS |
| CACCAATGCCAAGGCATTCT+TGG | 0.282646 | 1_1:-51171228 | Msa0026970:CDS |
| CTTATTCTACACAATCTTTA+GGG | 0.283530 | 1_1:-51171180 | Msa0026970:CDS |
| CAAATGGGATGAAGTTTGTT+TGG | 0.291147 | 1_1:-51168907 | Msa0026970:CDS |
| AATTTAGCAACTACATTAGA+TGG | 0.294516 | 1_1:+51172123 | None:intergenic |
| GGAGATTCTAACACTGATAT+TGG | 0.294543 | 1_1:+51169803 | None:intergenic |
| TTCTCAGGCCTTCATGCATT+TGG | 0.296383 | 1_1:+51171353 | None:intergenic |
| CCTAAAGATTGTGTAGAATA+AGG | 0.296581 | 1_1:+51171181 | None:intergenic |
| TTCGGCAATGACAAATCTTC+TGG | 0.299484 | 1_1:-51171625 | Msa0026970:CDS |
| TGCTATTAATTCATTCATTT+GGG | 0.311745 | 1_1:+51168928 | None:intergenic |
| AGTAAGAAATCATCATTTAA+AGG | 0.317903 | 1_1:-51170770 | Msa0026970:CDS |
| CACTAATAAATTAGGTGAAC+AGG | 0.318855 | 1_1:+51168422 | None:intergenic |
| GAATAAAACTTTACATTCTT+CGG | 0.320352 | 1_1:-51171320 | Msa0026970:CDS |
| AACAAATGATCTTAAGGCTT+TGG | 0.324183 | 1_1:-51171470 | Msa0026970:CDS |
| AATCTCTTTAGCCACTTCTA+TGG | 0.332582 | 1_1:+51171381 | None:intergenic |
| GTATGGGAGAACAGGAATTA+TGG | 0.340913 | 1_1:-51171544 | Msa0026970:CDS |
| ATCCTCTAACTTAGTGTCTA+AGG | 0.342936 | 1_1:+51169294 | None:intergenic |
| CTTTGAGGCGATGGATTTGT+TGG | 0.343660 | 1_1:+51171442 | None:intergenic |
| TCTATATGCATCTTGATGAT+AGG | 0.344195 | 1_1:+51172188 | None:intergenic |
| AAGAATCTTCATCCCATGAT+AGG | 0.352056 | 1_1:+51169368 | None:intergenic |
| CTTCTCTTGGCCTCATTAAG+AGG | 0.356613 | 1_1:+51169115 | None:intergenic |
| TGACAAATCATATCATGATT+TGG | 0.357422 | 1_1:-51171260 | Msa0026970:CDS |
| TAATCAACCTGTTCTGTGCT+TGG | 0.362030 | 1_1:+51171931 | None:intergenic |
| CTTCTAATCACCGATAAATT+CGG | 0.363877 | 1_1:+51172069 | None:intergenic |
| GTCATGACATCTAACGAAAA+AGG | 0.364074 | 1_1:-51171088 | Msa0026970:CDS |
| ACTATCCATTAAAACCTCTA+AGG | 0.368536 | 1_1:-51169324 | Msa0026970:CDS |
| GAGAATGGAGATTGATGCTT+TGG | 0.368829 | 1_1:-51168807 | Msa0026970:CDS |
| ATGAATGAATTAATAGCAAA+TGG | 0.370571 | 1_1:-51168923 | Msa0026970:CDS |
| AAGACATGTATGGTCATTTA+GGG | 0.374102 | 1_1:-51172026 | Msa0026970:CDS |
| ATCAAACCTTTGAAGATGTT+CGG | 0.376387 | 1_1:-51171643 | Msa0026970:CDS |
| GCATCGATGTATAGCAGAAT+TGG | 0.379470 | 1_1:+51168553 | None:intergenic |
| TGTTTCGGTGGCAATAGTTT+CGG | 0.382934 | 1_1:+51170667 | None:intergenic |
| TCTAAGGAACAAGTCCTTAG+AGG | 0.385073 | 1_1:+51169310 | None:intergenic |
| AGAATGGAGATTGATGCTTT+GGG | 0.385840 | 1_1:-51168806 | Msa0026970:CDS |
| CAAAGTTTCTATCAGAGAAA+TGG | 0.385972 | 1_1:-51171424 | Msa0026970:CDS |
| AAAAGGAGAGCCGAATTTAT+CGG | 0.390146 | 1_1:-51172079 | Msa0026970:CDS |
| AACATTGGAAAGTAGAAGAT+AGG | 0.392495 | 1_1:-51171993 | Msa0026970:CDS |
| TCTACTTTCCAATGTTTCAA+TGG | 0.395441 | 1_1:+51172000 | None:intergenic |
| TTGGAAGTTGTTGGCTATGA+TGG | 0.400242 | 1_1:-51169040 | Msa0026970:CDS |
| TTTCTCTGATAGAAACTTTG+AGG | 0.402390 | 1_1:+51171427 | None:intergenic |
| AAATGGGATGAAGTTTGTTT+GGG | 0.403555 | 1_1:-51168906 | Msa0026970:CDS |
| TCATTTATGTCCCTCAATGA+TGG | 0.404068 | 1_1:+51169157 | None:intergenic |
| CATCTTCAAATTGCTTCGAT+TGG | 0.408190 | 1_1:+51171776 | None:intergenic |
| ACCAATGCCAAGGCATTCTT+GGG | 0.408772 | 1_1:-51171227 | Msa0026970:CDS |
| TTGTGTTAATGCTGCACTAT+TGG | 0.418432 | 1_1:-51169059 | Msa0026970:CDS |
| AAGCTCAAACAATGAACTCT+TGG | 0.423027 | 1_1:-51171740 | Msa0026970:CDS |
| AGGAAAGAGGTTGTGCAGAG+TGG | 0.423258 | 1_1:-51168845 | Msa0026970:CDS |
| TACTGATGGAACTGATGTTT+CGG | 0.425769 | 1_1:+51170652 | None:intergenic |
| GTAAGAAATCATCATTTAAA+GGG | 0.426376 | 1_1:-51170769 | Msa0026970:CDS |
| ATGGGTCCAATGGGCTTTCA+AGG | 0.426820 | 1_1:+51169176 | None:intergenic |
| GGGTGGGGACAGTCACAGCC+TGG | 0.428898 | 1_1:-51168885 | Msa0026970:CDS |
| ATTATGATCAAGCAGCTGTA+TGG | 0.429931 | 1_1:-51171561 | Msa0026970:CDS |
| CCCTCAATGATGGGTCCAAT+GGG | 0.432400 | 1_1:+51169167 | None:intergenic |
| GTTCCATCAGTAAATTCATC+TGG | 0.434878 | 1_1:-51170641 | Msa0026970:CDS |
| AGATAGGTTTATGATGGATA+AGG | 0.437386 | 1_1:-51171977 | Msa0026970:CDS |
| GTAAATTCATCTGGAGTCCT+TGG | 0.441528 | 1_1:-51170632 | Msa0026970:CDS |
| AAGCAGCTGTATGGGAGAAC+AGG | 0.444633 | 1_1:-51171552 | Msa0026970:CDS |
| TCATCATCCAAGCACAGAAC+AGG | 0.447661 | 1_1:-51171938 | Msa0026970:CDS |
| GATGAAGTTTGTTTGGGGTG+GGG | 0.447920 | 1_1:-51168900 | Msa0026970:CDS |
| TGGGAGAACAAATGATCTTA+AGG | 0.453216 | 1_1:-51171476 | Msa0026970:CDS |
| TCATTTGTTCTCCCAGGACT+AGG | 0.456729 | 1_1:+51171484 | None:intergenic |
| GGATGAAGTTTGTTTGGGGT+GGG | 0.457347 | 1_1:-51168901 | Msa0026970:CDS |
| TCCTTGGAATGCACGAAAGA+TGG | 0.457734 | 1_1:-51169752 | Msa0026970:CDS |
| AGAAAATGTTGTTAGGAAAG+AGG | 0.458595 | 1_1:-51168858 | Msa0026970:CDS |
| TGGTTGTAGAAAATGTTGTT+AGG | 0.459275 | 1_1:-51168865 | Msa0026970:CDS |
| TGTGCAGAGTGGGTTGGTTG+AGG | 0.460054 | 1_1:-51168834 | Msa0026970:CDS |
| GTCAAATGAGTTCTCATCAC+TGG | 0.460647 | 1_1:+51171279 | None:intergenic |
| CAATACAGCTCATGAATCCT+TGG | 0.464219 | 1_1:-51169768 | Msa0026970:CDS |
| GATAGGTTTATGATGGATAA+GGG | 0.464809 | 1_1:-51171976 | Msa0026970:CDS |
| GGCTTTGACTCATTCAGTCC+AGG | 0.465246 | 1_1:+51169869 | None:intergenic |
| ACCACTATTCGAGTAGATTC+CGG | 0.465298 | 1_1:+51171514 | None:intergenic |
| CAGTGGCTAGGACCCTATCA+TGG | 0.471424 | 1_1:-51169381 | Msa0026970:CDS |
| TCATAGACTGTTGAAGATGC+AGG | 0.472164 | 1_1:+51170857 | None:intergenic |
| AACGTGTTCTCCTGAGTCCT+CGG | 0.472642 | 1_1:-51171152 | Msa0026970:CDS |
| GGGCTTGAAACCCTTTCAAA+AGG | 0.477681 | 1_1:-51172096 | Msa0026970:CDS |
| GGAAAGAGGTTGTGCAGAGT+GGG | 0.478282 | 1_1:-51168844 | Msa0026970:CDS |
| TACATTAGATGGACTGTGCT+TGG | 0.482853 | 1_1:+51172134 | None:intergenic |
| GTGTCGAGAAACTCTACTTT+GGG | 0.485906 | 1_1:-51171046 | Msa0026970:CDS |
| TCAATTAAATTGGACTTCAT+CGG | 0.485939 | 1_1:+51169424 | None:intergenic |
| TCCGGAATCTACTCGAATAG+TGG | 0.486429 | 1_1:-51171515 | Msa0026970:CDS |
| CAAACAATGAACTCTTGGTC+AGG | 0.487112 | 1_1:-51171735 | Msa0026970:CDS |
| GAACAGGTTGATTACAAAGA+TGG | 0.487334 | 1_1:-51171922 | Msa0026970:CDS |
| GAAGCAATTTGAAGATGCAT+TGG | 0.489886 | 1_1:-51171770 | Msa0026970:CDS |
| TGTGTCGAGAAACTCTACTT+TGG | 0.491632 | 1_1:-51171047 | Msa0026970:CDS |
| ACTGTTGAAGATGCAGGGTC+AGG | 0.493191 | 1_1:+51170863 | None:intergenic |
| TGATAGAAACTTTGAGGCGA+TGG | 0.494215 | 1_1:+51171433 | None:intergenic |
| CATTTATGTCCCTCAATGAT+GGG | 0.494789 | 1_1:+51169158 | None:intergenic |
| TTTGGAATCTCTGGCACCAA+GGG | 0.495428 | 1_1:+51169848 | None:intergenic |
| GAAAGAGTAAGAAGAAGGAT+AGG | 0.496544 | 1_1:-51171603 | Msa0026970:CDS |
| CCCATTGGACCCATCATTGA+GGG | 0.497319 | 1_1:-51169167 | Msa0026970:CDS |
| GGGATGAAGTTTGTTTGGGG+TGG | 0.498767 | 1_1:-51168902 | Msa0026970:CDS |
| AGAAACGACTTTCTGAAAGA+TGG | 0.500107 | 1_1:-51171114 | Msa0026970:CDS |
| GATTCTCCTCAAAACAATTG+TGG | 0.500159 | 1_1:-51170893 | Msa0026970:CDS |
| TCCCAAGAATGCCTTGGCAT+TGG | 0.500183 | 1_1:+51171226 | None:intergenic |
| GTGGTATTGAAGCCTAGTCC+TGG | 0.500707 | 1_1:-51171496 | Msa0026970:CDS |
| AGCATTATGTTACCAGTTGG+AGG | 0.501399 | 1_1:-51172409 | Msa0026970:intron |
| AGTAGAAGATAGGTTTATGA+TGG | 0.502124 | 1_1:-51171983 | Msa0026970:CDS |
| TTAAGATCATTTGTTCTCCC+AGG | 0.502592 | 1_1:+51171478 | None:intergenic |
| AGATGTTGATGAGGGGAAGA+TGG | 0.504294 | 1_1:-51171857 | Msa0026970:CDS |
| TTCTACACAATCTTTAGGGC+GGG | 0.506332 | 1_1:-51171176 | Msa0026970:CDS |
| TCCCTCAATGATGGGTCCAA+TGG | 0.507615 | 1_1:+51169166 | None:intergenic |
| GCTGTATTGTAATCTTCAAA+TGG | 0.510016 | 1_1:+51169782 | None:intergenic |
| GTTGGTTGAGGTTATGAGAA+TGG | 0.510683 | 1_1:-51168822 | Msa0026970:CDS |
| TCAAATTCCCTCTACTCCAC+AGG | 0.512881 | 1_1:-51171689 | Msa0026970:CDS |
| ATTCTCCTCAAAACAATTGT+GGG | 0.513750 | 1_1:-51170892 | Msa0026970:CDS |
| AAACGAGTGTTGTCAAATAG+TGG | 0.517727 | 1_1:+51168526 | None:intergenic |
| ACCATCTTTCGTGCATTCCA+AGG | 0.518813 | 1_1:+51169751 | None:intergenic |
| AATAAGGACTGCCACATACA+TGG | 0.520139 | 1_1:+51171197 | None:intergenic |
| TAGGGTGGCCATTGAAACAT+TGG | 0.520221 | 1_1:-51172008 | Msa0026970:CDS |
| TATGAAGTGTTGTGAAATAG+TGG | 0.520551 | 1_1:+51168611 | None:intergenic |
| GCTGCACTATTGGAAGTTGT+TGG | 0.521163 | 1_1:-51169049 | Msa0026970:CDS |
| GATTATTATCAAGACATGTA+TGG | 0.523774 | 1_1:-51172036 | Msa0026970:CDS |
| TGAATGAATTAATAGCAAAT+GGG | 0.524504 | 1_1:-51168922 | Msa0026970:CDS |
| TTATGATCAAGCAGCTGTAT+GGG | 0.524672 | 1_1:-51171560 | Msa0026970:CDS |
| ACAATTCAGAAACCTCCAAC+TGG | 0.525006 | 1_1:+51172397 | None:intergenic |
| TGGAGGGAAGATGTTGATGA+GGG | 0.531365 | 1_1:-51171865 | Msa0026970:CDS |
| CTCATCACTGGAATAGCCAC+TGG | 0.537890 | 1_1:+51171291 | None:intergenic |
| TGAACCCTCTTGAACAAAGA+AGG | 0.540265 | 1_1:+51168973 | None:intergenic |
| CTAGCCACTGATTCTATATG+TGG | 0.540349 | 1_1:+51169394 | None:intergenic |
| TTCTGGAAAGAGTAAGAAGA+AGG | 0.543740 | 1_1:-51171608 | Msa0026970:CDS |
| AGAAGCATTATGTTACCAGT+TGG | 0.546716 | 1_1:-51172412 | Msa0026970:five_prime_UTR |
| ACAGAGACAGAGAAGGAAGA+AGG | 0.546977 | 1_1:-51172534 | None:intergenic |
| TCTCAAAGCTTCAATGTTGG+TGG | 0.547700 | 1_1:-51170599 | Msa0026970:CDS |
| CATTCTTCGGTATTCTCCAG+TGG | 0.549767 | 1_1:-51171307 | Msa0026970:CDS |
| GCTTTGGGGAGGGAAATAGA+AGG | 0.550557 | 1_1:-51168791 | Msa0026970:CDS |
| AAGGTCCTTCTTTGTTCAAG+AGG | 0.550595 | 1_1:-51168978 | Msa0026970:CDS |
| GGAGATTGATGCTTTGGGGA+GGG | 0.550626 | 1_1:-51168801 | Msa0026970:CDS |
| TTGTGAAATAGTGGCTATAG+TGG | 0.552168 | 1_1:+51168620 | None:intergenic |
| CTGTACTCAGCCTCTTAATG+AGG | 0.553577 | 1_1:-51169125 | Msa0026970:CDS |
| GTATTCCCTTGAAAGCCCAT+TGG | 0.555850 | 1_1:-51169182 | Msa0026970:CDS |
| TGCATCATCCTGTGGAGTAG+AGG | 0.559463 | 1_1:+51171681 | None:intergenic |
| GCATCATCCTGTGGAGTAGA+GGG | 0.559621 | 1_1:+51171682 | None:intergenic |
| ATGTTGCAGATTTCTTTACA+AGG | 0.559791 | 1_1:+51171005 | None:intergenic |
| TGGGATTGCATCCATGTATG+TGG | 0.563606 | 1_1:-51171208 | Msa0026970:CDS |
| AGGTCCTTCTTTGTTCAAGA+GGG | 0.565387 | 1_1:-51168977 | Msa0026970:CDS |
| GTGGAGGGAAGATGTTGATG+AGG | 0.565512 | 1_1:-51171866 | Msa0026970:CDS |
| GAACAAAGAAGGACCTTCTG+TGG | 0.566033 | 1_1:+51168984 | None:intergenic |
| TCATTGCCGAACATCTTCAA+AGG | 0.569896 | 1_1:+51171637 | None:intergenic |
| ATGTTTAATGGACCACATTG+TGG | 0.570896 | 1_1:-51168951 | Msa0026970:CDS |
| GCCCATTGGACCCATCATTG+AGG | 0.570908 | 1_1:-51169168 | Msa0026970:CDS |
| TGGAGATTGATGCTTTGGGG+AGG | 0.573132 | 1_1:-51168802 | Msa0026970:CDS |
| AGAATCTTCATCCCATGATA+GGG | 0.573830 | 1_1:+51169369 | None:intergenic |
| CTCTTAATGAGGCCAAGAGA+AGG | 0.573920 | 1_1:-51169114 | Msa0026970:CDS |
| ATGACTCATTTCACACAAGA+TGG | 0.574580 | 1_1:-51169204 | Msa0026970:CDS |
| AGAGGTTGTGCAGAGTGGGT+TGG | 0.578519 | 1_1:-51168840 | Msa0026970:CDS |
| GGATGCAATCTCAGAGAGGA+AGG | 0.583915 | 1_1:-51171888 | Msa0026970:CDS |
| TCTATGCACACCGAGGACTC+AGG | 0.584334 | 1_1:+51171142 | None:intergenic |
| ACTCCAGATGAATTTACTGA+TGG | 0.584574 | 1_1:+51170638 | None:intergenic |
| AGTCTCTAGTGAACCACAAG+AGG | 0.584725 | 1_1:-51170543 | Msa0026970:CDS |
| CAGGAATTATGGATACTCTC+CGG | 0.585899 | 1_1:-51171533 | Msa0026970:CDS |
| ATGCAATCCCAAGAATGCCT+TGG | 0.586761 | 1_1:+51171220 | None:intergenic |
| ATCTCAGAGAGGAAGGTGGA+GGG | 0.587948 | 1_1:-51171881 | Msa0026970:CDS |
| AGTGGCTAGGACCCTATCAT+GGG | 0.590425 | 1_1:-51169380 | Msa0026970:CDS |
| AATCTCAGAGAGGAAGGTGG+AGG | 0.592424 | 1_1:-51171882 | Msa0026970:CDS |
| ATTTGGAATCTCTGGCACCA+AGG | 0.593391 | 1_1:+51169847 | None:intergenic |
| TGTACTTGAATCCATAGAAG+TGG | 0.594058 | 1_1:-51171392 | Msa0026970:CDS |
| TGGTATTGAAGCCTAGTCCT+GGG | 0.594500 | 1_1:-51171495 | Msa0026970:CDS |
| TCATGGGATGAAGATTCTTG+TGG | 0.595361 | 1_1:-51169364 | Msa0026970:CDS |
| ACTGAATGAGTCAAAGCCCT+TGG | 0.595715 | 1_1:-51169864 | Msa0026970:CDS |
| AGGCCAAGAGAAGGAAAATG+AGG | 0.596909 | 1_1:-51169105 | Msa0026970:CDS |
| GCATCATCAACACCGAGGCT+AGG | 0.600474 | 1_1:+51170833 | None:intergenic |
| TTTGAGACACATTATCTCCA+AGG | 0.601654 | 1_1:+51170615 | None:intergenic |
| AACAAAGAAGGACCTTCTGT+GGG | 0.601670 | 1_1:+51168985 | None:intergenic |
| CATTCATTTGGGCCACAATG+TGG | 0.603105 | 1_1:+51168939 | None:intergenic |
| TGAGTCCTCGGTGTGCATAG+AGG | 0.603550 | 1_1:-51171140 | Msa0026970:CDS |
| TTTACAGGCAGATGAGACGA+GGG | 0.606242 | 1_1:-51168728 | Msa0026970:exon |
| ATGTAGTTGCTAAATTAATG+GGG | 0.607079 | 1_1:-51172116 | Msa0026970:CDS |
| TGTGCAGTGGGACCCACAGA+AGG | 0.607104 | 1_1:-51168997 | Msa0026970:CDS |
| ACTAATAAATTAGGTGAACA+GGG | 0.608566 | 1_1:+51168423 | None:intergenic |
| TCACAAAGAACATGGCTCCA+AGG | 0.608900 | 1_1:-51170810 | Msa0026970:CDS |
| TGTTGCAGATTTCTTTACAA+GGG | 0.609571 | 1_1:+51171006 | None:intergenic |
| TGGGTCCAATGGGCTTTCAA+GGG | 0.610068 | 1_1:+51169177 | None:intergenic |
| ATTACACTCCAAATGCATGA+AGG | 0.610756 | 1_1:-51171361 | Msa0026970:CDS |
| ACAGTCTATGAACCTAGCCT+CGG | 0.617926 | 1_1:-51170845 | Msa0026970:CDS |
| CATAGACTGTTGAAGATGCA+GGG | 0.622353 | 1_1:+51170858 | None:intergenic |
| TCTAACACTGATATTGGACT+AGG | 0.624156 | 1_1:+51169809 | None:intergenic |
| ATCACCACATATAGAATCAG+TGG | 0.630942 | 1_1:-51169398 | Msa0026970:CDS |
| CACATATAGAATCAGTGGCT+AGG | 0.630949 | 1_1:-51169393 | Msa0026970:CDS |
| AATTACTTCAAGATGTGCAG+TGG | 0.633827 | 1_1:-51169010 | Msa0026970:CDS |
| GGAGGGAAGATGTTGATGAG+GGG | 0.637253 | 1_1:-51171864 | Msa0026970:CDS |
| ATTACTTCAAGATGTGCAGT+GGG | 0.638167 | 1_1:-51169009 | Msa0026970:CDS |
| ATGCACGAAAGATGGTCACA+TGG | 0.639883 | 1_1:-51169744 | Msa0026970:CDS |
| ATTCTACACAATCTTTAGGG+CGG | 0.643315 | 1_1:-51171177 | Msa0026970:CDS |
| AAGCTATGTCACCAATGCCA+AGG | 0.643366 | 1_1:-51171237 | Msa0026970:CDS |
| TGCAATCTCAGAGAGGAAGG+TGG | 0.652012 | 1_1:-51171885 | Msa0026970:CDS |
| ATTAGGTGAACAGGGCCATG+TGG | 0.652945 | 1_1:+51168431 | None:intergenic |
| TGCACGAAAGATGGTCACAT+GGG | 0.654570 | 1_1:-51169743 | Msa0026970:intron |
| GAATGGAGATTGATGCTTTG+GGG | 0.655462 | 1_1:-51168805 | Msa0026970:CDS |
| ACATGTATGGTCATTTAGGG+TGG | 0.658765 | 1_1:-51172023 | Msa0026970:CDS |
| ACAAAGATGGATATGAAACA+TGG | 0.662592 | 1_1:-51171909 | Msa0026970:CDS |
| AATGGGATGAAGTTTGTTTG+GGG | 0.665298 | 1_1:-51168905 | Msa0026970:CDS |
| GTGTCTCAAAGCTTCAATGT+TGG | 0.674820 | 1_1:-51170602 | Msa0026970:CDS |
| ATGTGATTTGCATCATCCTG+TGG | 0.677544 | 1_1:+51171673 | None:intergenic |
| TGATGGAACTGATGTTTCGG+TGG | 0.677793 | 1_1:+51170655 | None:intergenic |
| AGTGTGATCATGTCCTCTTG+TGG | 0.683426 | 1_1:+51170530 | None:intergenic |
| GAGGGACATAAATGACAACA+AGG | 0.687568 | 1_1:-51169149 | Msa0026970:CDS |
| AGAGGACATGATCACACTAG+AGG | 0.690396 | 1_1:-51170525 | Msa0026970:intron |
| AAAGAAATCTGCAACATCTG+TGG | 0.695639 | 1_1:-51170999 | Msa0026970:CDS |
| GATGATGCTCACAAAGAACA+TGG | 0.702506 | 1_1:-51170818 | Msa0026970:CDS |
| CAAAGAACATGGCTCCAAGG+TGG | 0.704136 | 1_1:-51170807 | Msa0026970:CDS |
| CTTTGCCTCTATGCACACCG+AGG | 0.706128 | 1_1:+51171135 | None:intergenic |
| ATGTTGTCAATAGCAGATCG+CGG | 0.710179 | 1_1:-51168697 | Msa0026970:three_prime_UTR |
| ACATGGATGCAATCTCAGAG+AGG | 0.725851 | 1_1:-51171892 | Msa0026970:CDS |
| TGTGAGCATCATCAACACCG+AGG | 0.796608 | 1_1:+51170828 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTAATTTATGATTAT+AGG | + | chr1_1:51168592-51168611 | None:intergenic | 10.0% |
| !! | ATATATTAATTCCATTAATT+AGG | + | chr1_1:51170564-51170583 | None:intergenic | 10.0% |
| !!! | ATAAAACAAGTTTTTATCAA+GGG | + | chr1_1:51170753-51170772 | None:intergenic | 15.0% |
| !!! | TATAAAACAAGTTTTTATCA+AGG | + | chr1_1:51170754-51170773 | None:intergenic | 15.0% |
| !!! | TTTTATTATATATATCCACA+TGG | - | chr1_1:51172427-51172446 | Msa0026970:five_prime_UTR | 15.0% |
| !! | TCATCAAGATAGAAAAATAA+TGG | - | chr1_1:51168658-51168677 | Msa0026970:three_prime_UTR | 20.0% |
| !! | TAATGTAGTTGCTAAATTAA+TGG | - | chr1_1:51168755-51168774 | Msa0026970:CDS | 20.0% |
| !! | AATGTAGTTGCTAAATTAAT+GGG | - | chr1_1:51168756-51168775 | Msa0026970:CDS | 20.0% |
| !!! | CTTGATAATAATCTTTTGTT+TGG | + | chr1_1:51168830-51168849 | None:intergenic | 20.0% |
| !! | GAATAAAACTTTACATTCTT+CGG | - | chr1_1:51169553-51169572 | Msa0026970:intron | 20.0% |
| !! | AGTAAGAAATCATCATTTAA+AGG | - | chr1_1:51170103-51170122 | Msa0026970:intron | 20.0% |
| !! | GTAAGAAATCATCATTTAAA+GGG | - | chr1_1:51170104-51170123 | Msa0026970:intron | 20.0% |
| !! | TCTTCTAGTGATATTTATTT+AGG | - | chr1_1:51170441-51170460 | Msa0026970:intron | 20.0% |
| !!! | ATAATGGTTAAGTTTGAAAT+AGG | + | chr1_1:51170468-51170487 | None:intergenic | 20.0% |
| !! | TTCAAACTTAACCATTATTT+AGG | - | chr1_1:51170470-51170489 | Msa0026970:intron | 20.0% |
| !! | AGATAAAAGATCCTAAATAA+TGG | + | chr1_1:51170484-51170503 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTGCTTATATTT+TGG | - | chr1_1:51170858-51170877 | Msa0026970:CDS | 20.0% |
| !! | AAACAAATCAAAGATTTCAT+TGG | + | chr1_1:51170974-51170993 | None:intergenic | 20.0% |
| !! | TGCTATTAATTCATTCATTT+GGG | + | chr1_1:51171948-51171967 | None:intergenic | 20.0% |
| !!! | TTGCTATTAATTCATTCATT+TGG | + | chr1_1:51171949-51171968 | None:intergenic | 20.0% |
| !! | ATGAATGAATTAATAGCAAA+TGG | - | chr1_1:51171950-51171969 | Msa0026970:CDS | 20.0% |
| !! | TGAATGAATTAATAGCAAAT+GGG | - | chr1_1:51171951-51171970 | Msa0026970:CDS | 20.0% |
| !!! | TTTTTTCTTTGGACATTTCT+TGG | + | chr1_1:51168716-51168735 | None:intergenic | 25.0% |
| ! | AATTTAGCAACTACATTAGA+TGG | + | chr1_1:51168753-51168772 | None:intergenic | 25.0% |
| ! | ATGTAGTTGCTAAATTAATG+GGG | - | chr1_1:51168757-51168776 | Msa0026970:CDS | 25.0% |
| ! | GATTATTATCAAGACATGTA+TGG | - | chr1_1:51168837-51168856 | Msa0026970:CDS | 25.0% |
| ! | TGACAAATCATATCATGATT+TGG | - | chr1_1:51169613-51169632 | Msa0026970:intron | 25.0% |
| ! | CTTATTCTACACAATCTTTA+GGG | - | chr1_1:51169693-51169712 | Msa0026970:intron | 25.0% |
| !!! | ATGCTCATTTTTTCTTTGAA+AGG | + | chr1_1:51169956-51169975 | None:intergenic | 25.0% |
| !!! | AGATGAACTAGATTTTTTCT+TGG | + | chr1_1:51170170-51170189 | None:intergenic | 25.0% |
| ! | AACTCAAGATTTCACAATTA+TGG | + | chr1_1:51170520-51170539 | None:intergenic | 25.0% |
| ! | TATTACACCAAAAAAACTAG+AGG | + | chr1_1:51170707-51170726 | None:intergenic | 25.0% |
| ! | TCAAAGATTTCATTGGTATA+TGG | + | chr1_1:51170967-51170986 | None:intergenic | 25.0% |
| ! | TTCCAAATGAAAAACAAGAT+CGG | - | chr1_1:51171041-51171060 | Msa0026970:CDS | 25.0% |
| ! | TTTATCAAATAAGAGCTTCT+TGG | + | chr1_1:51171200-51171219 | None:intergenic | 25.0% |
| ! | TAGAAAGTAGCAAATAGTTA+AGG | + | chr1_1:51171226-51171245 | None:intergenic | 25.0% |
| !! | GTCAGACATTTTTAATGATT+TGG | + | chr1_1:51171301-51171320 | None:intergenic | 25.0% |
| ! | TAAAAATGTCTGACTTCTAT+CGG | - | chr1_1:51171307-51171326 | Msa0026970:CDS | 25.0% |
| ! | TCAATTAAATTGGACTTCAT+CGG | + | chr1_1:51171452-51171471 | None:intergenic | 25.0% |
| !! | TGGTGATTTGTCAATTAAAT+TGG | + | chr1_1:51171462-51171481 | None:intergenic | 25.0% |
| ! | ACTAATAAATTAGGTGAACA+GGG | + | chr1_1:51172453-51172472 | None:intergenic | 25.0% |
| ! | TTTCGTAGCACTAATAAATT+AGG | + | chr1_1:51172462-51172481 | None:intergenic | 25.0% |
| TACAACTATTACAGACAACT+TGG | + | chr1_1:51168522-51168541 | None:intergenic | 30.0% | |
| ! | TCTATATGCATCTTGATGAT+AGG | + | chr1_1:51168688-51168707 | None:intergenic | 30.0% |
| CTTCTAATCACCGATAAATT+CGG | + | chr1_1:51168807-51168826 | None:intergenic | 30.0% | |
| AAGACATGTATGGTCATTTA+GGG | - | chr1_1:51168847-51168866 | Msa0026970:CDS | 30.0% | |
| TCTACTTTCCAATGTTTCAA+TGG | + | chr1_1:51168876-51168895 | None:intergenic | 30.0% | |
| AACATTGGAAAGTAGAAGAT+AGG | - | chr1_1:51168880-51168899 | Msa0026970:CDS | 30.0% | |
| AGTAGAAGATAGGTTTATGA+TGG | - | chr1_1:51168890-51168909 | Msa0026970:CDS | 30.0% | |
| !! | AGATAGGTTTATGATGGATA+AGG | - | chr1_1:51168896-51168915 | Msa0026970:CDS | 30.0% |
| !! | GATAGGTTTATGATGGATAA+GGG | - | chr1_1:51168897-51168916 | Msa0026970:CDS | 30.0% |
| ACAAAGATGGATATGAAACA+TGG | - | chr1_1:51168964-51168983 | Msa0026970:CDS | 30.0% | |
| ! | ATCAAACCTTTGAAGATGTT+CGG | - | chr1_1:51169230-51169249 | Msa0026970:CDS | 30.0% |
| AACAAATGATCTTAAGGCTT+TGG | - | chr1_1:51169403-51169422 | Msa0026970:CDS | 30.0% | |
| TTTCTCTGATAGAAACTTTG+AGG | + | chr1_1:51169449-51169468 | None:intergenic | 30.0% | |
| CAAAGTTTCTATCAGAGAAA+TGG | - | chr1_1:51169449-51169468 | Msa0026970:intron | 30.0% | |
| !! | TATTCTTTTGATAGCTTCTC+AGG | + | chr1_1:51169538-51169557 | None:intergenic | 30.0% |
| CCTAAAGATTGTGTAGAATA+AGG | + | chr1_1:51169695-51169714 | None:intergenic | 30.0% | |
| CCTTATTCTACACAATCTTT+AGG | - | chr1_1:51169692-51169711 | Msa0026970:intron | 30.0% | |
| AAAAAGGTCATCAAGAACAA+AGG | - | chr1_1:51169801-51169820 | Msa0026970:CDS | 30.0% | |
| TGTTGCAGATTTCTTTACAA+GGG | + | chr1_1:51169870-51169889 | None:intergenic | 30.0% | |
| ATGTTGCAGATTTCTTTACA+AGG | + | chr1_1:51169871-51169890 | None:intergenic | 30.0% | |
| ! | CAGATTTTCTTTGTTCTTCT+TGG | + | chr1_1:51169919-51169938 | None:intergenic | 30.0% |
| ATTCTCCTCAAAACAATTGT+GGG | - | chr1_1:51169981-51170000 | Msa0026970:intron | 30.0% | |
| TCTCTTCTCTTCCTAATTAA+TGG | - | chr1_1:51170550-51170569 | Msa0026970:CDS | 30.0% | |
| TAATATATCCTTCTGTGTGT+TGG | - | chr1_1:51170576-51170595 | Msa0026970:CDS | 30.0% | |
| !!! | ACAATCTCCTCTAGTTTTTT+TGG | - | chr1_1:51170697-51170716 | Msa0026970:CDS | 30.0% |
| !!! | AGTTTTTATCAAGGGCATTT+TGG | + | chr1_1:51170745-51170764 | None:intergenic | 30.0% |
| ! | ACAAAATGTTTGGAGTTTGA+TGG | + | chr1_1:51170885-51170904 | None:intergenic | 30.0% |
| ACTAAAAAACCCTATGTTTG+TGG | + | chr1_1:51170930-51170949 | None:intergenic | 30.0% | |
| !! | TGTTTTTCATTTGGAATCTC+TGG | + | chr1_1:51171037-51171056 | None:intergenic | 30.0% |
| GCTGTATTGTAATCTTCAAA+TGG | + | chr1_1:51171094-51171113 | None:intergenic | 30.0% | |
| AAAGACACTGATAAAGAAAG+AGG | + | chr1_1:51171172-51171191 | None:intergenic | 30.0% | |
| GTCACTCGGATAATAATAAT+AGG | + | chr1_1:51171399-51171418 | None:intergenic | 30.0% | |
| !!! | GACACTTGTTTTGTATGTAT+AGG | - | chr1_1:51171416-51171435 | Msa0026970:CDS | 30.0% |
| ! | TTTTGTATGTATAGGATCAC+TGG | - | chr1_1:51171424-51171443 | Msa0026970:CDS | 30.0% |
| !! | AGAGGTTTTAATGGATAGTA+AGG | + | chr1_1:51171548-51171567 | None:intergenic | 30.0% |
| ACTATCCATTAAAACCTCTA+AGG | - | chr1_1:51171549-51171568 | Msa0026970:CDS | 30.0% | |
| ! | AAATGGGATGAAGTTTGTTT+GGG | - | chr1_1:51171967-51171986 | Msa0026970:CDS | 30.0% |
| ! | TAACAACATTTTCTACAACC+AGG | + | chr1_1:51172009-51172028 | None:intergenic | 30.0% |
| TGGTTGTAGAAAATGTTGTT+AGG | - | chr1_1:51172008-51172027 | Msa0026970:CDS | 30.0% | |
| AGAAAATGTTGTTAGGAAAG+AGG | - | chr1_1:51172015-51172034 | Msa0026970:CDS | 30.0% | |
| !! | TATGAAGTGTTGTGAAATAG+TGG | + | chr1_1:51172265-51172284 | None:intergenic | 30.0% |
| CACTAATAAATTAGGTGAAC+AGG | + | chr1_1:51172454-51172473 | None:intergenic | 30.0% | |
| !! | AGAAGCATTATGTTACCAGT+TGG | - | chr1_1:51168461-51168480 | Msa0026970:three_prime_UTR | 35.0% |
| !!! | GTGCTTGGAGTTTTTTTCTT+TGG | + | chr1_1:51168727-51168746 | None:intergenic | 35.0% |
| AAAAGGAGAGCCGAATTTAT+CGG | - | chr1_1:51168794-51168813 | Msa0026970:CDS | 35.0% | |
| CAAGACATGTATGGTCATTT+AGG | - | chr1_1:51168846-51168865 | Msa0026970:CDS | 35.0% | |
| !! | GAACAGGTTGATTACAAAGA+TGG | - | chr1_1:51168951-51168970 | Msa0026970:CDS | 35.0% |
| CATCTTCAAATTGCTTCGAT+TGG | + | chr1_1:51169100-51169119 | None:intergenic | 35.0% | |
| GAAGCAATTTGAAGATGCAT+TGG | - | chr1_1:51169103-51169122 | Msa0026970:CDS | 35.0% | |
| AAGCTCAAACAATGAACTCT+TGG | - | chr1_1:51169133-51169152 | Msa0026970:CDS | 35.0% | |
| ! | TTCTGGAAAGAGTAAGAAGA+AGG | - | chr1_1:51169265-51169284 | Msa0026970:CDS | 35.0% |
| GAAAGAGTAAGAAGAAGGAT+AGG | - | chr1_1:51169270-51169289 | Msa0026970:CDS | 35.0% | |
| ! | GCTGCTTGATCATAATTTTC+TGG | + | chr1_1:51169308-51169327 | None:intergenic | 35.0% |
| ATTATGATCAAGCAGCTGTA+TGG | - | chr1_1:51169312-51169331 | Msa0026970:CDS | 35.0% | |
| TTATGATCAAGCAGCTGTAT+GGG | - | chr1_1:51169313-51169332 | Msa0026970:CDS | 35.0% | |
| TTAAGATCATTTGTTCTCCC+AGG | + | chr1_1:51169398-51169417 | None:intergenic | 35.0% | |
| TGGGAGAACAAATGATCTTA+AGG | - | chr1_1:51169397-51169416 | Msa0026970:CDS | 35.0% | |
| TGTACTTGAATCCATAGAAG+TGG | - | chr1_1:51169481-51169500 | Msa0026970:intron | 35.0% | |
| AATCTCTTTAGCCACTTCTA+TGG | + | chr1_1:51169495-51169514 | None:intergenic | 35.0% | |
| ATTACACTCCAAATGCATGA+AGG | - | chr1_1:51169512-51169531 | Msa0026970:intron | 35.0% | |
| ! | ATTCTACACAATCTTTAGGG+CGG | - | chr1_1:51169696-51169715 | Msa0026970:intron | 35.0% |
| ! | AGAAACGACTTTCTGAAAGA+TGG | - | chr1_1:51169759-51169778 | Msa0026970:CDS | 35.0% |
| GTCATGACATCTAACGAAAA+AGG | - | chr1_1:51169785-51169804 | Msa0026970:CDS | 35.0% | |
| AAAGAAATCTGCAACATCTG+TGG | - | chr1_1:51169874-51169893 | Msa0026970:intron | 35.0% | |
| GATTCTCCTCAAAACAATTG+TGG | - | chr1_1:51169980-51169999 | Msa0026970:intron | 35.0% | |
| TACTGATGGAACTGATGTTT+CGG | + | chr1_1:51170224-51170243 | None:intergenic | 35.0% | |
| GTTCCATCAGTAAATTCATC+TGG | - | chr1_1:51170232-51170251 | Msa0026970:intron | 35.0% | |
| ACTCCAGATGAATTTACTGA+TGG | + | chr1_1:51170238-51170257 | None:intergenic | 35.0% | |
| ! | TTTGAGACACATTATCTCCA+AGG | + | chr1_1:51170261-51170280 | None:intergenic | 35.0% |
| ! | ACTTTTCTTAGTCAGCACAT+TGG | - | chr1_1:51170666-51170685 | Msa0026970:CDS | 35.0% |
| ! | CAAACTCCAAACATTTTGTG+TGG | - | chr1_1:51170886-51170905 | Msa0026970:CDS | 35.0% |
| TTCAGACCACACAAAATGTT+TGG | + | chr1_1:51170895-51170914 | None:intergenic | 35.0% | |
| TACAGACTTCCACAAACATA+GGG | - | chr1_1:51170918-51170937 | Msa0026970:CDS | 35.0% | |
| !! | ATTTGTTTGTTTTCACAGCC+TGG | - | chr1_1:51170986-51171005 | Msa0026970:CDS | 35.0% |
| TCTAACACTGATATTGGACT+AGG | + | chr1_1:51171067-51171086 | None:intergenic | 35.0% | |
| GGAGATTCTAACACTGATAT+TGG | + | chr1_1:51171073-51171092 | None:intergenic | 35.0% | |
| CACTGATAAAGAAAGAGGTA+AGG | + | chr1_1:51171167-51171186 | None:intergenic | 35.0% | |
| CAAATAAGAGCTTCTTGGAA+TGG | + | chr1_1:51171195-51171214 | None:intergenic | 35.0% | |
| TCCAAAGTCACATGTATGAT+TGG | - | chr1_1:51171337-51171356 | Msa0026970:CDS | 35.0% | |
| ACCAATCATACATGTGACTT+TGG | + | chr1_1:51171341-51171360 | None:intergenic | 35.0% | |
| ! | CATACAAAACAAGTGTCACT+CGG | + | chr1_1:51171413-51171432 | None:intergenic | 35.0% |
| ATCACCACATATAGAATCAG+TGG | - | chr1_1:51171475-51171494 | Msa0026970:CDS | 35.0% | |
| AGAATCTTCATCCCATGATA+GGG | + | chr1_1:51171507-51171526 | None:intergenic | 35.0% | |
| AAGAATCTTCATCCCATGAT+AGG | + | chr1_1:51171508-51171527 | None:intergenic | 35.0% | |
| !! | CAAGTCCTTAGAGGTTTTAA+TGG | + | chr1_1:51171557-51171576 | None:intergenic | 35.0% |
| TTCCTTAGACACTAAGTTAG+AGG | - | chr1_1:51171577-51171596 | Msa0026970:CDS | 35.0% | |
| ATCCTCTAACTTAGTGTCTA+AGG | + | chr1_1:51171582-51171601 | None:intergenic | 35.0% | |
| ! | CAGATGCTGATAGTAGTTTT+TGG | + | chr1_1:51171625-51171644 | None:intergenic | 35.0% |
| CAAAAACTACTATCAGCATC+TGG | - | chr1_1:51171623-51171642 | Msa0026970:CDS | 35.0% | |
| ATGACTCATTTCACACAAGA+TGG | - | chr1_1:51171669-51171688 | Msa0026970:CDS | 35.0% | |
| CATTTATGTCCCTCAATGAT+GGG | + | chr1_1:51171718-51171737 | None:intergenic | 35.0% | |
| TCATTTATGTCCCTCAATGA+TGG | + | chr1_1:51171719-51171738 | None:intergenic | 35.0% | |
| TTGTGTTAATGCTGCACTAT+TGG | - | chr1_1:51171814-51171833 | Msa0026970:CDS | 35.0% | |
| AATTACTTCAAGATGTGCAG+TGG | - | chr1_1:51171863-51171882 | Msa0026970:CDS | 35.0% | |
| ATTACTTCAAGATGTGCAGT+GGG | - | chr1_1:51171864-51171883 | Msa0026970:CDS | 35.0% | |
| TCAAGAGGGTTCATGTTTAA+TGG | - | chr1_1:51171910-51171929 | Msa0026970:CDS | 35.0% | |
| ! | ATGTTTAATGGACCACATTG+TGG | - | chr1_1:51171922-51171941 | Msa0026970:CDS | 35.0% |
| ! | CAAATGGGATGAAGTTTGTT+TGG | - | chr1_1:51171966-51171985 | Msa0026970:CDS | 35.0% |
| ! | AATGGGATGAAGTTTGTTTG+GGG | - | chr1_1:51171968-51171987 | Msa0026970:CDS | 35.0% |
| AGAATGGAGATTGATGCTTT+GGG | - | chr1_1:51172067-51172086 | Msa0026970:CDS | 35.0% | |
| ! | AATCTTGTGCTCGATTTTAC+AGG | - | chr1_1:51172130-51172149 | Msa0026970:CDS | 35.0% |
| TTGTGAAATAGTGGCTATAG+TGG | + | chr1_1:51172256-51172275 | None:intergenic | 35.0% | |
| ! | AAACGAGTGTTGTCAAATAG+TGG | + | chr1_1:51172350-51172369 | None:intergenic | 35.0% |
| AGCATTATGTTACCAGTTGG+AGG | - | chr1_1:51168464-51168483 | Msa0026970:three_prime_UTR | 40.0% | |
| ACAATTCAGAAACCTCCAAC+TGG | + | chr1_1:51168479-51168498 | None:intergenic | 40.0% | |
| TTGAAAGTGAAGAAGCTGCA+TGG | + | chr1_1:51168630-51168649 | None:intergenic | 40.0% | |
| !! | TACATTAGATGGACTGTGCT+TGG | + | chr1_1:51168742-51168761 | None:intergenic | 40.0% |
| !! | ATTCGGCTCTCCTTTTGAAA+GGG | + | chr1_1:51168790-51168809 | None:intergenic | 40.0% |
| ! | AATTCGGCTCTCCTTTTGAA+AGG | + | chr1_1:51168791-51168810 | None:intergenic | 40.0% |
| ACATGTATGGTCATTTAGGG+TGG | - | chr1_1:51168850-51168869 | Msa0026970:CDS | 40.0% | |
| TAATCAACCTGTTCTGTGCT+TGG | + | chr1_1:51168945-51168964 | None:intergenic | 40.0% | |
| CAAACAATGAACTCTTGGTC+AGG | - | chr1_1:51169138-51169157 | Msa0026970:CDS | 40.0% | |
| ! | ATGTGATTTGCATCATCCTG+TGG | + | chr1_1:51169203-51169222 | None:intergenic | 40.0% |
| TCATTGCCGAACATCTTCAA+AGG | + | chr1_1:51169239-51169258 | None:intergenic | 40.0% | |
| TTCGGCAATGACAAATCTTC+TGG | - | chr1_1:51169248-51169267 | Msa0026970:CDS | 40.0% | |
| GTATGGGAGAACAGGAATTA+TGG | - | chr1_1:51169329-51169348 | Msa0026970:CDS | 40.0% | |
| CAGGAATTATGGATACTCTC+CGG | - | chr1_1:51169340-51169359 | Msa0026970:CDS | 40.0% | |
| ACCACTATTCGAGTAGATTC+CGG | + | chr1_1:51169362-51169381 | None:intergenic | 40.0% | |
| !! | TGATAGAAACTTTGAGGCGA+TGG | + | chr1_1:51169443-51169462 | None:intergenic | 40.0% |
| GTCAAATGAGTTCTCATCAC+TGG | + | chr1_1:51169597-51169616 | None:intergenic | 40.0% | |
| AATAAGGACTGCCACATACA+TGG | + | chr1_1:51169679-51169698 | None:intergenic | 40.0% | |
| !! | TTCTACACAATCTTTAGGGC+GGG | - | chr1_1:51169697-51169716 | Msa0026970:intron | 40.0% |
| TGTGTCGAGAAACTCTACTT+TGG | - | chr1_1:51169826-51169845 | Msa0026970:CDS | 40.0% | |
| GTGTCGAGAAACTCTACTTT+GGG | - | chr1_1:51169827-51169846 | Msa0026970:CDS | 40.0% | |
| !! | TTCGACCCACAATTGTTTTG+AGG | + | chr1_1:51169989-51170008 | None:intergenic | 40.0% |
| CATAGACTGTTGAAGATGCA+GGG | + | chr1_1:51170018-51170037 | None:intergenic | 40.0% | |
| TCATAGACTGTTGAAGATGC+AGG | + | chr1_1:51170019-51170038 | None:intergenic | 40.0% | |
| GATGATGCTCACAAAGAACA+TGG | - | chr1_1:51170055-51170074 | Msa0026970:intron | 40.0% | |
| !!! | CTTTGACTTTTTCACCACCT+TGG | + | chr1_1:51170083-51170102 | None:intergenic | 40.0% |
| TGTTTCGGTGGCAATAGTTT+CGG | + | chr1_1:51170209-51170228 | None:intergenic | 40.0% | |
| ! | GTAAATTCATCTGGAGTCCT+TGG | - | chr1_1:51170241-51170260 | Msa0026970:intron | 40.0% |
| GTGTCTCAAAGCTTCAATGT+TGG | - | chr1_1:51170271-51170290 | Msa0026970:intron | 40.0% | |
| TCTCAAAGCTTCAATGTTGG+TGG | - | chr1_1:51170274-51170293 | Msa0026970:intron | 40.0% | |
| TAGGAAGAGAAGAGACAGAT+AGG | + | chr1_1:51170545-51170564 | None:intergenic | 40.0% | |
| TATCCTTCTGTGTGTTGGAA+TGG | - | chr1_1:51170581-51170600 | Msa0026970:CDS | 40.0% | |
| ACTAGAGGAGATTGTCTACT+AGG | + | chr1_1:51170692-51170711 | None:intergenic | 40.0% | |
| CTACAGACTTCCACAAACAT+AGG | - | chr1_1:51170917-51170936 | Msa0026970:CDS | 40.0% | |
| !!! | GGCCGATCTTGTTTTTCATT+TGG | + | chr1_1:51171046-51171065 | None:intergenic | 40.0% |
| CAATACAGCTCATGAATCCT+TGG | - | chr1_1:51171105-51171124 | Msa0026970:CDS | 40.0% | |
| TGGTCACATGGGTAATACTT+AGG | - | chr1_1:51171141-51171160 | Msa0026970:CDS | 40.0% | |
| !! | CTAGCCACTGATTCTATATG+TGG | + | chr1_1:51171482-51171501 | None:intergenic | 40.0% |
| CACATATAGAATCAGTGGCT+AGG | - | chr1_1:51171480-51171499 | Msa0026970:CDS | 40.0% | |
| TCATGGGATGAAGATTCTTG+TGG | - | chr1_1:51171509-51171528 | Msa0026970:CDS | 40.0% | |
| TCTAAGGAACAAGTCCTTAG+AGG | + | chr1_1:51171566-51171585 | None:intergenic | 40.0% | |
| GAGGGACATAAATGACAACA+AGG | - | chr1_1:51171724-51171743 | Msa0026970:CDS | 40.0% | |
| ! | TGACCTCATTTTCCTTCTCT+TGG | + | chr1_1:51171774-51171793 | None:intergenic | 40.0% |
| ! | TTGGAAGTTGTTGGCTATGA+TGG | - | chr1_1:51171833-51171852 | Msa0026970:CDS | 40.0% |
| AACAAAGAAGGACCTTCTGT+GGG | + | chr1_1:51171891-51171910 | None:intergenic | 40.0% | |
| AAGGTCCTTCTTTGTTCAAG+AGG | - | chr1_1:51171895-51171914 | Msa0026970:CDS | 40.0% | |
| AGGTCCTTCTTTGTTCAAGA+GGG | - | chr1_1:51171896-51171915 | Msa0026970:CDS | 40.0% | |
| TGAACCCTCTTGAACAAAGA+AGG | + | chr1_1:51171903-51171922 | None:intergenic | 40.0% | |
| GTTGGTTGAGGTTATGAGAA+TGG | - | chr1_1:51172051-51172070 | Msa0026970:CDS | 40.0% | |
| GAGAATGGAGATTGATGCTT+TGG | - | chr1_1:51172066-51172085 | Msa0026970:CDS | 40.0% | |
| GAATGGAGATTGATGCTTTG+GGG | - | chr1_1:51172068-51172087 | Msa0026970:CDS | 40.0% | |
| ATGTTGTCAATAGCAGATCG+CGG | - | chr1_1:51172176-51172195 | Msa0026970:five_prime_UTR | 40.0% | |
| ! | GCATCGATGTATAGCAGAAT+TGG | + | chr1_1:51172323-51172342 | None:intergenic | 40.0% |
| AGAGAGAGAGAGAGAGAGAT+GGG | + | chr1_1:51168384-51168403 | None:intergenic | 45.0% | |
| GAAGAAGCTGCATGGCAATT+AGG | + | chr1_1:51168622-51168641 | None:intergenic | 45.0% | |
| GGGCTTGAAACCCTTTCAAA+AGG | - | chr1_1:51168777-51168796 | Msa0026970:CDS | 45.0% | |
| TAGGGTGGCCATTGAAACAT+TGG | - | chr1_1:51168865-51168884 | Msa0026970:CDS | 45.0% | |
| TCATCATCCAAGCACAGAAC+AGG | - | chr1_1:51168935-51168954 | Msa0026970:CDS | 45.0% | |
| ACATGGATGCAATCTCAGAG+AGG | - | chr1_1:51168981-51169000 | Msa0026970:CDS | 45.0% | |
| ! | TGGAGGGAAGATGTTGATGA+GGG | - | chr1_1:51169008-51169027 | Msa0026970:CDS | 45.0% |
| ! | AGATGTTGATGAGGGGAAGA+TGG | - | chr1_1:51169016-51169035 | Msa0026970:CDS | 45.0% |
| TCAAATTCCCTCTACTCCAC+AGG | - | chr1_1:51169184-51169203 | Msa0026970:CDS | 45.0% | |
| TCCGGAATCTACTCGAATAG+TGG | - | chr1_1:51169358-51169377 | Msa0026970:CDS | 45.0% | |
| ! | TGGTATTGAAGCCTAGTCCT+GGG | - | chr1_1:51169378-51169397 | Msa0026970:CDS | 45.0% |
| TCATTTGTTCTCCCAGGACT+AGG | + | chr1_1:51169392-51169411 | None:intergenic | 45.0% | |
| !! | CTTTGAGGCGATGGATTTGT+TGG | + | chr1_1:51169434-51169453 | None:intergenic | 45.0% |
| TTCTCAGGCCTTCATGCATT+TGG | + | chr1_1:51169523-51169542 | None:intergenic | 45.0% | |
| CATTCTTCGGTATTCTCCAG+TGG | - | chr1_1:51169566-51169585 | Msa0026970:intron | 45.0% | |
| AAGCTATGTCACCAATGCCA+AGG | - | chr1_1:51169636-51169655 | Msa0026970:intron | 45.0% | |
| ! | ACCAATGCCAAGGCATTCTT+GGG | - | chr1_1:51169646-51169665 | Msa0026970:intron | 45.0% |
| ATGCAATCCCAAGAATGCCT+TGG | + | chr1_1:51169656-51169675 | None:intergenic | 45.0% | |
| TGGGATTGCATCCATGTATG+TGG | - | chr1_1:51169665-51169684 | Msa0026970:intron | 45.0% | |
| ACAGTCTATGAACCTAGCCT+CGG | - | chr1_1:51170028-51170047 | Msa0026970:intron | 45.0% | |
| TCACAAAGAACATGGCTCCA+AGG | - | chr1_1:51170063-51170082 | Msa0026970:intron | 45.0% | |
| TGATGGAACTGATGTTTCGG+TGG | + | chr1_1:51170221-51170240 | None:intergenic | 45.0% | |
| AGTCTCTAGTGAACCACAAG+AGG | - | chr1_1:51170330-51170349 | Msa0026970:intron | 45.0% | |
| AGTGTGATCATGTCCTCTTG+TGG | + | chr1_1:51170346-51170365 | None:intergenic | 45.0% | |
| AGAGGACATGATCACACTAG+AGG | - | chr1_1:51170348-51170367 | Msa0026970:intron | 45.0% | |
| TCACCATTCCAACACACAGA+AGG | + | chr1_1:51170587-51170606 | None:intergenic | 45.0% | |
| ACTGAATGAGTCAAAGCCCT+TGG | - | chr1_1:51171009-51171028 | Msa0026970:CDS | 45.0% | |
| ! | TTTGGAATCTCTGGCACCAA+GGG | + | chr1_1:51171028-51171047 | None:intergenic | 45.0% |
| ! | ATTTGGAATCTCTGGCACCA+AGG | + | chr1_1:51171029-51171048 | None:intergenic | 45.0% |
| TCCTTGGAATGCACGAAAGA+TGG | - | chr1_1:51171121-51171140 | Msa0026970:CDS | 45.0% | |
| ACCATCTTTCGTGCATTCCA+AGG | + | chr1_1:51171125-51171144 | None:intergenic | 45.0% | |
| ATGCACGAAAGATGGTCACA+TGG | - | chr1_1:51171129-51171148 | Msa0026970:CDS | 45.0% | |
| TGCACGAAAGATGGTCACAT+GGG | - | chr1_1:51171130-51171149 | Msa0026970:CDS | 45.0% | |
| GTATTCCCTTGAAAGCCCAT+TGG | - | chr1_1:51171691-51171710 | Msa0026970:CDS | 45.0% | |
| CTGTACTCAGCCTCTTAATG+AGG | - | chr1_1:51171748-51171767 | Msa0026970:CDS | 45.0% | |
| CTTCTCTTGGCCTCATTAAG+AGG | + | chr1_1:51171761-51171780 | None:intergenic | 45.0% | |
| CTCTTAATGAGGCCAAGAGA+AGG | - | chr1_1:51171759-51171778 | Msa0026970:CDS | 45.0% | |
| AGGCCAAGAGAAGGAAAATG+AGG | - | chr1_1:51171768-51171787 | Msa0026970:CDS | 45.0% | |
| GCTGCACTATTGGAAGTTGT+TGG | - | chr1_1:51171824-51171843 | Msa0026970:CDS | 45.0% | |
| GAACAAAGAAGGACCTTCTG+TGG | + | chr1_1:51171892-51171911 | None:intergenic | 45.0% | |
| CATTCATTTGGGCCACAATG+TGG | + | chr1_1:51171937-51171956 | None:intergenic | 45.0% | |
| ! | GGATGAAGTTTGTTTGGGGT+GGG | - | chr1_1:51171972-51171991 | Msa0026970:CDS | 45.0% |
| ! | GATGAAGTTTGTTTGGGGTG+GGG | - | chr1_1:51171973-51171992 | Msa0026970:CDS | 45.0% |
| ! | TTTTACAGGCAGATGAGACG+AGG | - | chr1_1:51172144-51172163 | Msa0026970:CDS | 45.0% |
| TTTACAGGCAGATGAGACGA+GGG | - | chr1_1:51172145-51172164 | Msa0026970:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGATGG+GGG | + | chr1_1:51168382-51168401 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGATG+GGG | + | chr1_1:51168383-51168402 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | + | chr1_1:51168385-51168404 | None:intergenic | 50.0% | |
| GGATGCAATCTCAGAGAGGA+AGG | - | chr1_1:51168985-51169004 | Msa0026970:CDS | 50.0% | |
| TGCAATCTCAGAGAGGAAGG+TGG | - | chr1_1:51168988-51169007 | Msa0026970:CDS | 50.0% | |
| AATCTCAGAGAGGAAGGTGG+AGG | - | chr1_1:51168991-51169010 | Msa0026970:CDS | 50.0% | |
| ATCTCAGAGAGGAAGGTGGA+GGG | - | chr1_1:51168992-51169011 | Msa0026970:CDS | 50.0% | |
| GTGGAGGGAAGATGTTGATG+AGG | - | chr1_1:51169007-51169026 | Msa0026970:CDS | 50.0% | |
| ! | GGAGGGAAGATGTTGATGAG+GGG | - | chr1_1:51169009-51169028 | Msa0026970:CDS | 50.0% |
| GCATCATCCTGTGGAGTAGA+GGG | + | chr1_1:51169194-51169213 | None:intergenic | 50.0% | |
| TGCATCATCCTGTGGAGTAG+AGG | + | chr1_1:51169195-51169214 | None:intergenic | 50.0% | |
| AAGCAGCTGTATGGGAGAAC+AGG | - | chr1_1:51169321-51169340 | Msa0026970:CDS | 50.0% | |
| ! | GTGGTATTGAAGCCTAGTCC+TGG | - | chr1_1:51169377-51169396 | Msa0026970:CDS | 50.0% |
| CTCATCACTGGAATAGCCAC+TGG | + | chr1_1:51169585-51169604 | None:intergenic | 50.0% | |
| ! | CACCAATGCCAAGGCATTCT+TGG | - | chr1_1:51169645-51169664 | Msa0026970:intron | 50.0% |
| TCCCAAGAATGCCTTGGCAT+TGG | + | chr1_1:51169650-51169669 | None:intergenic | 50.0% | |
| AACGTGTTCTCCTGAGTCCT+CGG | - | chr1_1:51169721-51169740 | Msa0026970:intron | 50.0% | |
| ACTGTTGAAGATGCAGGGTC+AGG | + | chr1_1:51170013-51170032 | None:intergenic | 50.0% | |
| TGTGAGCATCATCAACACCG+AGG | + | chr1_1:51170048-51170067 | None:intergenic | 50.0% | |
| CAAAGAACATGGCTCCAAGG+TGG | - | chr1_1:51170066-51170085 | Msa0026970:intron | 50.0% | |
| ! | GGCTTTGACTCATTCAGTCC+AGG | + | chr1_1:51171007-51171026 | None:intergenic | 50.0% |
| AGTGGCTAGGACCCTATCAT+GGG | - | chr1_1:51171493-51171512 | Msa0026970:CDS | 50.0% | |
| ! | TGGGTCCAATGGGCTTTCAA+GGG | + | chr1_1:51171699-51171718 | None:intergenic | 50.0% |
| ! | ATGGGTCCAATGGGCTTTCA+AGG | + | chr1_1:51171700-51171719 | None:intergenic | 50.0% |
| !! | CCCTCAATGATGGGTCCAAT+GGG | + | chr1_1:51171709-51171728 | None:intergenic | 50.0% |
| CCCATTGGACCCATCATTGA+GGG | - | chr1_1:51171706-51171725 | Msa0026970:CDS | 50.0% | |
| !! | TCCCTCAATGATGGGTCCAA+TGG | + | chr1_1:51171710-51171729 | None:intergenic | 50.0% |
| ! | GGGATGAAGTTTGTTTGGGG+TGG | - | chr1_1:51171971-51171990 | Msa0026970:CDS | 50.0% |
| AGGAAAGAGGTTGTGCAGAG+TGG | - | chr1_1:51172028-51172047 | Msa0026970:CDS | 50.0% | |
| GGAAAGAGGTTGTGCAGAGT+GGG | - | chr1_1:51172029-51172048 | Msa0026970:CDS | 50.0% | |
| !! | TGGAGATTGATGCTTTGGGG+AGG | - | chr1_1:51172071-51172090 | Msa0026970:CDS | 50.0% |
| !! | GGAGATTGATGCTTTGGGGA+GGG | - | chr1_1:51172072-51172091 | Msa0026970:CDS | 50.0% |
| !! | GCTTTGGGGAGGGAAATAGA+AGG | - | chr1_1:51172082-51172101 | Msa0026970:CDS | 50.0% |
| ATTAGGTGAACAGGGCCATG+TGG | + | chr1_1:51172445-51172464 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGATGGG+GGG | + | chr1_1:51168381-51168400 | None:intergenic | 55.0% | |
| TCTATGCACACCGAGGACTC+AGG | + | chr1_1:51169734-51169753 | None:intergenic | 55.0% | |
| ! | TGAGTCCTCGGTGTGCATAG+AGG | - | chr1_1:51169733-51169752 | Msa0026970:intron | 55.0% |
| CTTTGCCTCTATGCACACCG+AGG | + | chr1_1:51169741-51169760 | None:intergenic | 55.0% | |
| GCATCATCAACACCGAGGCT+AGG | + | chr1_1:51170043-51170062 | None:intergenic | 55.0% | |
| CAGTGGCTAGGACCCTATCA+TGG | - | chr1_1:51171492-51171511 | Msa0026970:CDS | 55.0% | |
| GCCCATTGGACCCATCATTG+AGG | - | chr1_1:51171705-51171724 | Msa0026970:CDS | 55.0% | |
| AGAGGTTGTGCAGAGTGGGT+TGG | - | chr1_1:51172033-51172052 | Msa0026970:CDS | 55.0% | |
| !! | TGTGCAGAGTGGGTTGGTTG+AGG | - | chr1_1:51172039-51172058 | Msa0026970:CDS | 55.0% |
| TGTGCAGTGGGACCCACAGA+AGG | - | chr1_1:51171876-51171895 | Msa0026970:CDS | 60.0% | |
| GGGTGGGGACAGTCACAGCC+TGG | - | chr1_1:51171988-51172007 | Msa0026970:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51168353 | 51172542 | 51168353 | ID=Msa0026970;Name=Msa0026970 |
| chr1_1 | mRNA | 51168353 | 51172542 | 51168353 | ID=Msa0026970-mRNA-1;Parent=Msa0026970;Name=Msa0026970-mRNA-1;_AED=0.02;_eAED=0.02;_QI=218|1|1|1|0.66|0.5|4|383|839 |
| chr1_1 | exon | 51168353 | 51169457 | 51168353 | ID=Msa0026970-mRNA-1:exon:14903;Parent=Msa0026970-mRNA-1 |
| chr1_1 | exon | 51169744 | 51169891 | 51169744 | ID=Msa0026970-mRNA-1:exon:14902;Parent=Msa0026970-mRNA-1 |
| chr1_1 | exon | 51170526 | 51172260 | 51170526 | ID=Msa0026970-mRNA-1:exon:14901;Parent=Msa0026970-mRNA-1 |
| chr1_1 | exon | 51172410 | 51172542 | 51172410 | ID=Msa0026970-mRNA-1:exon:14900;Parent=Msa0026970-mRNA-1 |
| chr1_1 | five_prime_UTR | 51172410 | 51172542 | 51172410 | ID=Msa0026970-mRNA-1:five_prime_utr;Parent=Msa0026970-mRNA-1 |
| chr1_1 | five_prime_UTR | 51172176 | 51172260 | 51172176 | ID=Msa0026970-mRNA-1:five_prime_utr;Parent=Msa0026970-mRNA-1 |
| chr1_1 | CDS | 51170526 | 51172175 | 51170526 | ID=Msa0026970-mRNA-1:cds;Parent=Msa0026970-mRNA-1 |
| chr1_1 | CDS | 51169744 | 51169891 | 51169744 | ID=Msa0026970-mRNA-1:cds;Parent=Msa0026970-mRNA-1 |
| chr1_1 | CDS | 51168736 | 51169457 | 51168736 | ID=Msa0026970-mRNA-1:cds;Parent=Msa0026970-mRNA-1 |
| chr1_1 | three_prime_UTR | 51168353 | 51168735 | 51168353 | ID=Msa0026970-mRNA-1:three_prime_utr;Parent=Msa0026970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
