Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122200 | A0A072VW67 | 94.393 | 214 | 12 | 0 | 1 | 214 | 1 | 214 | 5.09e-148 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042270 | Msa0122200 | 0.800192 | 1.617061e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122200 | MtrunA17_Chr1g0181951 | 94.393 | 214 | 12 | 0 | 1 | 214 | 1 | 214 | 9.81e-152 | 419 |
| Msa0122200 | MtrunA17_Chr7g0263331 | 57.500 | 200 | 79 | 1 | 20 | 213 | 27 | 226 | 3.50e-88 | 259 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122200 | AT3G53490.1 | 50.000 | 212 | 96 | 3 | 10 | 213 | 16 | 225 | 1.00e-66 | 205 |
| Msa0122200 | AT5G02720.2 | 41.935 | 217 | 115 | 3 | 7 | 213 | 10 | 225 | 4.86e-58 | 183 |
| Msa0122200 | AT5G02720.1 | 40.559 | 143 | 74 | 3 | 81 | 213 | 1 | 142 | 3.61e-32 | 114 |
Find 34 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAAAGCACATTGCAATTC+TGG | 0.156757 | 1_3:+48562409 | Msa0122200:CDS |
| GTACTGATTCTTGGAGTATT+TGG | 0.218627 | 1_3:+48562458 | Msa0122200:CDS |
| GCCGCAATCGTACTGATTCT+TGG | 0.305883 | 1_3:+48562449 | Msa0122200:CDS |
| TGTCCAGATTGCTTATCTTT+TGG | 0.319088 | 1_3:+48561053 | Msa0122200:CDS |
| ATGATGAAAGTAAACAAAAT+AGG | 0.334194 | 1_3:+48562595 | Msa0122200:exon |
| TGCAAGAGAAATTCTAGAAT+TGG | 0.349973 | 1_3:-48559733 | None:intergenic |
| CTTACAATGGTCAACAATCT+TGG | 0.411012 | 1_3:+48560179 | Msa0122200:CDS |
| TATTTGGTGCATATAAGTTC+TGG | 0.436563 | 1_3:+48562474 | Msa0122200:CDS |
| CACCCCGTGGTGAATATGTT+AGG | 0.455237 | 1_3:+48560997 | Msa0122200:CDS |
| ATTGAAGATGAGCTTGGCCT+TGG | 0.469493 | 1_3:+48562560 | Msa0122200:CDS |
| GAAGATGAGCTTGGCCTTGG+TGG | 0.473743 | 1_3:+48562563 | Msa0122200:CDS |
| AATAGGCCTTGTATAGAGTA+AGG | 0.480676 | 1_3:+48562612 | Msa0122200:three_prime_UTR |
| CCACCAAAAGATAAGCAATC+TGG | 0.481282 | 1_3:-48561056 | None:intergenic |
| ATATGTTAGGTTCAAGGAAA+AGG | 0.489574 | 1_3:+48561010 | Msa0122200:CDS |
| CAAGCGGTGTGGACTATATG+AGG | 0.497618 | 1_3:+48560911 | Msa0122200:CDS |
| CAATGGTCAACAATCTTGGC+AGG | 0.497989 | 1_3:+48560183 | Msa0122200:CDS |
| CTGTGTATTTCCTTTGTGAA+GGG | 0.506113 | 1_3:+48560107 | Msa0122200:CDS |
| TGGTGAATATGTTAGGTTCA+AGG | 0.507323 | 1_3:+48561004 | Msa0122200:CDS |
| TCCGCGTTTATCAGAAGAGC+TGG | 0.507384 | 1_3:-48562390 | None:intergenic |
| GTTGGTTATACCTGGAAAGT+TGG | 0.509631 | 1_3:-48559772 | None:intergenic |
| ACTGTGTATTTCCTTTGTGA+AGG | 0.528274 | 1_3:+48560106 | Msa0122200:CDS |
| GGTTAACCTTACTCTATACA+AGG | 0.534233 | 1_3:-48562618 | None:intergenic |
| GAACCTAACATATTCACCAC+GGG | 0.536661 | 1_3:-48561000 | None:intergenic |
| CTAGAATTGGACGCAGACAT+TGG | 0.542008 | 1_3:-48559720 | None:intergenic |
| TGTGTATTTCCTTTGTGAAG+GGG | 0.585526 | 1_3:+48560108 | Msa0122200:CDS |
| GCTGAAGAAAAGAAAAGAAG+AGG | 0.593583 | 1_3:+48562496 | Msa0122200:CDS |
| TCCAAGAATCAGTACGATTG+CGG | 0.597519 | 1_3:-48562450 | None:intergenic |
| GATGACATTGAAGATGAGCT+TGG | 0.616971 | 1_3:+48562554 | Msa0122200:CDS |
| CGGGGTGCAGTAAAATCAGA+AGG | 0.638432 | 1_3:-48560981 | None:intergenic |
| ATCATATTATCGCACCACCA+AGG | 0.646566 | 1_3:-48562577 | None:intergenic |
| TGAACCTAACATATTCACCA+CGG | 0.674692 | 1_3:-48561001 | None:intergenic |
| AGATCTTCGAAAAGCACGAG+TGG | 0.676921 | 1_3:+48560068 | Msa0122200:CDS |
| TCCAGCTCTTCTGATAAACG+CGG | 0.697228 | 1_3:+48562389 | Msa0122200:CDS |
| AACCTAACATATTCACCACG+GGG | 0.749127 | 1_3:-48560999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATGCTTTATAAAATTA+AGG | + | chr1_3:48560214-48560233 | Msa0122200:intron | 15.0% |
| !!! | TACTTATGTATTTCTTTTTT+AGG | - | chr1_3:48560538-48560557 | None:intergenic | 15.0% |
| !!! | TTTTTTCCTTCATTTTTTTA+TGG | + | chr1_3:48562044-48562063 | Msa0122200:intron | 15.0% |
| !!! | TTTTAATGTCATCAATTTTA+TGG | + | chr1_3:48562275-48562294 | Msa0122200:intron | 15.0% |
| !! | AAAAATTAAAGAGAAGAAGT+TGG | - | chr1_3:48559793-48559812 | None:intergenic | 20.0% |
| !! | CTTATAGCTTATATGAAAAT+AGG | + | chr1_3:48560463-48560482 | Msa0122200:intron | 20.0% |
| !!! | TTAAGTTCATTAGACTTTTA+AGG | + | chr1_3:48561493-48561512 | Msa0122200:intron | 20.0% |
| !! | AATGATAGAGAGAAAAAAAA+TGG | + | chr1_3:48561523-48561542 | Msa0122200:intron | 20.0% |
| !! | TTACAAAGAAAACACAATAT+AGG | - | chr1_3:48561581-48561600 | None:intergenic | 20.0% |
| !! | TTAAGACGTTTATTTATACA+GGG | - | chr1_3:48561609-48561628 | None:intergenic | 20.0% |
| !!! | ACCATTTTAGATTAAATTGT+AGG | + | chr1_3:48561997-48562016 | Msa0122200:intron | 20.0% |
| !!! | CCATTTTAGATTAAATTGTA+GGG | + | chr1_3:48561998-48562017 | Msa0122200:intron | 20.0% |
| !!! | GGGATTTTTATTATAAATAC+AGG | + | chr1_3:48562018-48562037 | Msa0122200:intron | 20.0% |
| !! | TTTCTTCCATAAAAAAATGA+AGG | - | chr1_3:48562053-48562072 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTATGGAAGAAA+AGG | + | chr1_3:48562053-48562072 | Msa0122200:intron | 20.0% |
| !!! | TATTGTATTGATTAAAGAGA+AGG | + | chr1_3:48562118-48562137 | Msa0122200:intron | 20.0% |
| !! | ACTTAAATAAAAGTCTTCTA+AGG | - | chr1_3:48562253-48562272 | None:intergenic | 20.0% |
| !!! | ATCAATTTTATGGTAAATCA+AGG | + | chr1_3:48562285-48562304 | Msa0122200:intron | 20.0% |
| !!! | TTTTTGAAGTTATTTGAAGA+TGG | + | chr1_3:48562530-48562549 | Msa0122200:CDS | 20.0% |
| !! | ATGATGAAAGTAAACAAAAT+AGG | + | chr1_3:48562595-48562614 | Msa0122200:exon | 20.0% |
| !!! | TTTGCATAAACAAAATTTTG+TGG | - | chr1_3:48562642-48562661 | None:intergenic | 20.0% |
| !!! | ACAAAATTTTGTTTATGCAA+AGG | + | chr1_3:48562641-48562660 | Msa0122200:three_prime_UTR | 20.0% |
| !!! | CAAAATTTTGTTTATGCAAA+GGG | + | chr1_3:48562642-48562661 | Msa0122200:three_prime_UTR | 20.0% |
| ! | ATTTACACAACAAATACACA+TGG | - | chr1_3:48559970-48559989 | None:intergenic | 25.0% |
| ! | TCTGTTTACACTTTCAAATT+TGG | + | chr1_3:48560317-48560336 | Msa0122200:intron | 25.0% |
| ! | TGAATGATACACTTATTGTT+TGG | - | chr1_3:48560594-48560613 | None:intergenic | 25.0% |
| !!! | AATACACTTTTTTTTTTCCG+AGG | - | chr1_3:48560758-48560777 | None:intergenic | 25.0% |
| !! | TTTTCAATCTTCATCATGTT+TGG | + | chr1_3:48560799-48560818 | Msa0122200:intron | 25.0% |
| ! | TTTCAATCTTCATCATGTTT+GGG | + | chr1_3:48560800-48560819 | Msa0122200:intron | 25.0% |
| ! | GAAGCAATAAAGAATATTCA+TGG | - | chr1_3:48561124-48561143 | None:intergenic | 25.0% |
| ! | TATCTAGATGATGTATTCAT+TGG | - | chr1_3:48561161-48561180 | None:intergenic | 25.0% |
| ! | GAATACATCATCTAGATATT+TGG | + | chr1_3:48561163-48561182 | Msa0122200:intron | 25.0% |
| ! | ATCATCTAGATATTTGGAAA+AGG | + | chr1_3:48561169-48561188 | Msa0122200:intron | 25.0% |
| ! | TCATCTAGATATTTGGAAAA+GGG | + | chr1_3:48561170-48561189 | Msa0122200:intron | 25.0% |
| !! | TAAGTAAACAACTTTTGCAA+TGG | - | chr1_3:48561220-48561239 | None:intergenic | 25.0% |
| ! | GAGAATCATTGAACAAAATT+GGG | - | chr1_3:48561342-48561361 | None:intergenic | 25.0% |
| ! | AGAGAATCATTGAACAAAAT+TGG | - | chr1_3:48561343-48561362 | None:intergenic | 25.0% |
| ! | TAAGACGTTTATTTATACAG+GGG | - | chr1_3:48561608-48561627 | None:intergenic | 25.0% |
| ! | GTTAAGACGTTTATTTATAC+AGG | - | chr1_3:48561610-48561629 | None:intergenic | 25.0% |
| ! | TACTAAACCTTCAATTCAAA+TGG | - | chr1_3:48561692-48561711 | None:intergenic | 25.0% |
| ! | TTCACATATTCTTTAGTATC+AGG | + | chr1_3:48561744-48561763 | Msa0122200:intron | 25.0% |
| ! | TCACATATTCTTTAGTATCA+GGG | + | chr1_3:48561745-48561764 | Msa0122200:intron | 25.0% |
| ! | ATTAGTCACTAGTTAAATCA+TGG | - | chr1_3:48561808-48561827 | None:intergenic | 25.0% |
| ! | TGATTTAACTAGTGACTAAT+TGG | + | chr1_3:48561808-48561827 | Msa0122200:intron | 25.0% |
| !!! | TCATTTTTTATCCTCTAAAG+TGG | - | chr1_3:48561856-48561875 | None:intergenic | 25.0% |
| ! | AAAAATGAACTTATGACAGT+TGG | + | chr1_3:48561868-48561887 | Msa0122200:intron | 25.0% |
| ! | TCTACTTAAACAAATTGAGT+GGG | + | chr1_3:48561968-48561987 | Msa0122200:intron | 25.0% |
| ! | CCCTACAATTTAATCTAAAA+TGG | - | chr1_3:48562001-48562020 | None:intergenic | 25.0% |
| !! | GAATTTATACTTTTGCTAGA+TGG | + | chr1_3:48562090-48562109 | Msa0122200:intron | 25.0% |
| !! | AATTTTATGGTAAATCAAGG+AGG | + | chr1_3:48562288-48562307 | Msa0122200:intron | 25.0% |
| ! | TTATAAAGATTACCTTGCAA+AGG | - | chr1_3:48562326-48562345 | None:intergenic | 25.0% |
| !! | TGCAAGAGAAATTCTAGAAT+TGG | - | chr1_3:48559736-48559755 | None:intergenic | 30.0% |
| ATTTGCATTTGAATTGTGCA+GGG | + | chr1_3:48560008-48560027 | Msa0122200:intron | 30.0% | |
| !!! | CGTTTTGTTTATGCTTACAA+TGG | + | chr1_3:48560166-48560185 | Msa0122200:CDS | 30.0% |
| GTTGTATATTCTTAGAGCAA+GGG | + | chr1_3:48560339-48560358 | Msa0122200:intron | 30.0% | |
| AGTCTCACATGTATTTATGT+CGG | - | chr1_3:48560397-48560416 | None:intergenic | 30.0% | |
| AATTACTCAAAGTTCATGTG+TGG | - | chr1_3:48560676-48560695 | None:intergenic | 30.0% | |
| TTTATCAACCAAAATTTCCC+AGG | + | chr1_3:48560721-48560740 | Msa0122200:intron | 30.0% | |
| !! | TACTTTTTGAGCAATTACTG+AGG | + | chr1_3:48560840-48560859 | Msa0122200:intron | 30.0% |
| TTGAGAAGTTACTTAAAACC+TGG | - | chr1_3:48560881-48560900 | None:intergenic | 30.0% | |
| TCTCAAGTAAAAAATGCAAG+CGG | + | chr1_3:48560895-48560914 | Msa0122200:CDS | 30.0% | |
| ATATGTTAGGTTCAAGGAAA+AGG | + | chr1_3:48561010-48561029 | Msa0122200:CDS | 30.0% | |
| GCAATAAAGAATATTCATGG+TGG | - | chr1_3:48561121-48561140 | None:intergenic | 30.0% | |
| TGTTGACATAAATGCAAAAG+AGG | - | chr1_3:48561386-48561405 | None:intergenic | 30.0% | |
| TTGAATACCCAAGTTATTCA+CGG | - | chr1_3:48561451-48561470 | None:intergenic | 30.0% | |
| AGAAAACACAATATAGGAGA+TGG | - | chr1_3:48561575-48561594 | None:intergenic | 30.0% | |
| AACCTTCAATTCAAATGGTT+GGG | - | chr1_3:48561687-48561706 | None:intergenic | 30.0% | |
| AAACCTTCAATTCAAATGGT+TGG | - | chr1_3:48561688-48561707 | None:intergenic | 30.0% | |
| AAAGAATATGTGAAGCACAA+GGG | - | chr1_3:48561738-48561757 | None:intergenic | 30.0% | |
| TAAAGAATATGTGAAGCACA+AGG | - | chr1_3:48561739-48561758 | None:intergenic | 30.0% | |
| ! | CTCAATTTGTTTAAGTAGAC+TGG | - | chr1_3:48561967-48561986 | None:intergenic | 30.0% |
| GTCTACTTAAACAAATTGAG+TGG | + | chr1_3:48561967-48561986 | Msa0122200:intron | 30.0% | |
| ! | TTTATACTTTTGCTAGATGG+AGG | + | chr1_3:48562093-48562112 | Msa0122200:intron | 30.0% |
| ! | TATGCTTCACTGTTTTATAC+TGG | + | chr1_3:48562175-48562194 | Msa0122200:intron | 30.0% |
| !!! | ATTGCAATTCTGGTTTTTCT+TGG | + | chr1_3:48562419-48562438 | Msa0122200:CDS | 30.0% |
| !! | TATTTGGTGCATATAAGTTC+TGG | + | chr1_3:48562474-48562493 | Msa0122200:CDS | 30.0% |
| ATAACTTCAAAAACTGAGCT+TGG | - | chr1_3:48562523-48562542 | None:intergenic | 30.0% | |
| ! | ACACATGGATTATAAACCTC+TGG | - | chr1_3:48559955-48559974 | None:intergenic | 35.0% |
| CATTTGCATTTGAATTGTGC+AGG | + | chr1_3:48560007-48560026 | Msa0122200:intron | 35.0% | |
| ACTGTGTATTTCCTTTGTGA+AGG | + | chr1_3:48560106-48560125 | Msa0122200:CDS | 35.0% | |
| CTGTGTATTTCCTTTGTGAA+GGG | + | chr1_3:48560107-48560126 | Msa0122200:CDS | 35.0% | |
| TGTGTATTTCCTTTGTGAAG+GGG | + | chr1_3:48560108-48560127 | Msa0122200:CDS | 35.0% | |
| CTTACAATGGTCAACAATCT+TGG | + | chr1_3:48560179-48560198 | Msa0122200:CDS | 35.0% | |
| ! | TTGATTTTGTGTCCATTCTG+AGG | + | chr1_3:48560242-48560261 | Msa0122200:intron | 35.0% |
| TCTAATGAACTACCTCAGAA+TGG | - | chr1_3:48560257-48560276 | None:intergenic | 35.0% | |
| GGTTGTATATTCTTAGAGCA+AGG | + | chr1_3:48560338-48560357 | Msa0122200:intron | 35.0% | |
| AAATACATGTGAGACTGCTT+TGG | + | chr1_3:48560401-48560420 | Msa0122200:intron | 35.0% | |
| TGAACCTAACATATTCACCA+CGG | - | chr1_3:48561004-48561023 | None:intergenic | 35.0% | |
| TGGTGAATATGTTAGGTTCA+AGG | + | chr1_3:48561004-48561023 | Msa0122200:CDS | 35.0% | |
| ! | TGTCCAGATTGCTTATCTTT+TGG | + | chr1_3:48561053-48561072 | Msa0122200:CDS | 35.0% |
| ! | ATTCTCTCAATCTCTAGTTC+TGG | + | chr1_3:48561273-48561292 | Msa0122200:intron | 35.0% |
| TTGATCACCGTGAATAACTT+GGG | + | chr1_3:48561441-48561460 | Msa0122200:intron | 35.0% | |
| !! | GCTGATTTGAAAATTAACCG+TGG | + | chr1_3:48561659-48561678 | Msa0122200:intron | 35.0% |
| TACCCAACCATTTGAATTGA+AGG | + | chr1_3:48561682-48561701 | Msa0122200:intron | 35.0% | |
| AAGAATATGTGAAGCACAAG+GGG | - | chr1_3:48561737-48561756 | None:intergenic | 35.0% | |
| ATGAACTTATGACAGTTGGT+TGG | + | chr1_3:48561872-48561891 | Msa0122200:intron | 35.0% | |
| TGAAGTTGTTAACATCTACC+TGG | + | chr1_3:48561915-48561934 | Msa0122200:intron | 35.0% | |
| ! | GATTAAAGAGAAGGCACATA+AGG | + | chr1_3:48562127-48562146 | Msa0122200:intron | 35.0% |
| ! | CACTGTTTTATACTGGTAGT+AGG | + | chr1_3:48562182-48562201 | Msa0122200:intron | 35.0% |
| !! | GTACTGATTCTTGGAGTATT+TGG | + | chr1_3:48562458-48562477 | Msa0122200:CDS | 35.0% |
| GCTGAAGAAAAGAAAAGAAG+AGG | + | chr1_3:48562496-48562515 | Msa0122200:CDS | 35.0% | |
| ! | AATAGGCCTTGTATAGAGTA+AGG | + | chr1_3:48562612-48562631 | Msa0122200:three_prime_UTR | 35.0% |
| GGTTAACCTTACTCTATACA+AGG | - | chr1_3:48562621-48562640 | None:intergenic | 35.0% | |
| GTTGGTTATACCTGGAAAGT+TGG | - | chr1_3:48559775-48559794 | None:intergenic | 40.0% | |
| ! | GAGAAGAAGTTGGTTATACC+TGG | - | chr1_3:48559783-48559802 | None:intergenic | 40.0% |
| CACATGCATCATACACAATG+CGG | + | chr1_3:48559855-48559874 | Msa0122200:intron | 40.0% | |
| ! | TTTTGTTCTCCCCTTCACAA+AGG | - | chr1_3:48560120-48560139 | None:intergenic | 40.0% |
| !! | AGACTGCTTTGGATAGCTTT+TGG | + | chr1_3:48560412-48560431 | Msa0122200:intron | 40.0% |
| GAAGATAGCAGTTACTCGAA+TGG | - | chr1_3:48560654-48560673 | None:intergenic | 40.0% | |
| AACCAAAATTTCCCAGGAAC+AGG | + | chr1_3:48560727-48560746 | Msa0122200:intron | 40.0% | |
| AGTAAAAAATGCAAGCGGTG+TGG | + | chr1_3:48560900-48560919 | Msa0122200:CDS | 40.0% | |
| AACCTAACATATTCACCACG+GGG | - | chr1_3:48561002-48561021 | None:intergenic | 40.0% | |
| GAACCTAACATATTCACCAC+GGG | - | chr1_3:48561003-48561022 | None:intergenic | 40.0% | |
| CCACCAAAAGATAAGCAATC+TGG | - | chr1_3:48561059-48561078 | None:intergenic | 40.0% | |
| ! | CCAGATTGCTTATCTTTTGG+TGG | + | chr1_3:48561056-48561075 | Msa0122200:CDS | 40.0% |
| ! | CTTTTGCAATGGCATCAACT+GGG | - | chr1_3:48561209-48561228 | None:intergenic | 40.0% |
| ! | ACTTTTGCAATGGCATCAAC+TGG | - | chr1_3:48561210-48561229 | None:intergenic | 40.0% |
| GTTGATCACCGTGAATAACT+TGG | + | chr1_3:48561440-48561459 | Msa0122200:intron | 40.0% | |
| GGTGAAGCAAATTACTCTTG+CGG | + | chr1_3:48561544-48561563 | Msa0122200:intron | 40.0% | |
| ATTCAAATGGTTGGGTACCA+CGG | - | chr1_3:48561679-48561698 | None:intergenic | 40.0% | |
| GTATCAGGGAACACAAAAGT+TGG | + | chr1_3:48561759-48561778 | Msa0122200:intron | 40.0% | |
| ! | CTAAAGTGGACTCAGTTAAG+AGG | - | chr1_3:48561842-48561861 | None:intergenic | 40.0% |
| CTTAACTGAGTCCACTTTAG+AGG | + | chr1_3:48561842-48561861 | Msa0122200:intron | 40.0% | |
| TGCTACGAAATGCAACAAAG+TGG | - | chr1_3:48562228-48562247 | None:intergenic | 40.0% | |
| !!! | TCTGGTTTTTCTTGGTGCTT+TGG | + | chr1_3:48562427-48562446 | Msa0122200:CDS | 40.0% |
| TCCAAGAATCAGTACGATTG+CGG | - | chr1_3:48562453-48562472 | None:intergenic | 40.0% | |
| GATGACATTGAAGATGAGCT+TGG | + | chr1_3:48562554-48562573 | Msa0122200:CDS | 40.0% | |
| ATCATATTATCGCACCACCA+AGG | - | chr1_3:48562580-48562599 | None:intergenic | 40.0% | |
| CTAGAATTGGACGCAGACAT+TGG | - | chr1_3:48559723-48559742 | None:intergenic | 45.0% | |
| ! | GTTTTCTTCGCCAACTTTCC+AGG | + | chr1_3:48559762-48559781 | Msa0122200:CDS | 45.0% |
| GTTAGTGTCGTCTCAAGTGT+CGG | + | chr1_3:48559925-48559944 | Msa0122200:intron | 45.0% | |
| ! | AGATCTTCGAAAAGCACGAG+TGG | + | chr1_3:48560068-48560087 | Msa0122200:CDS | 45.0% |
| CAATGGTCAACAATCTTGGC+AGG | + | chr1_3:48560183-48560202 | Msa0122200:CDS | 45.0% | |
| !! | TCTTAGAGCAAGGGTGTCTT+TGG | + | chr1_3:48560348-48560367 | Msa0122200:intron | 45.0% |
| ! | CACCTGTTCCTGGGAAATTT+TGG | - | chr1_3:48560732-48560751 | None:intergenic | 45.0% |
| CAAAATTTCCCAGGAACAGG+TGG | + | chr1_3:48560730-48560749 | Msa0122200:intron | 45.0% | |
| ! | AGACGATGCTTTTGACGAGT+GGG | + | chr1_3:48560950-48560969 | Msa0122200:CDS | 45.0% |
| !! | GAGTTGACTCCTCTAAAGTC+AGG | - | chr1_3:48561945-48561964 | None:intergenic | 45.0% |
| ACTGTTGATGCTCCTTTGCA+AGG | + | chr1_3:48562311-48562330 | Msa0122200:intron | 45.0% | |
| TCCAGCTCTTCTGATAAACG+CGG | + | chr1_3:48562389-48562408 | Msa0122200:CDS | 45.0% | |
| ! | CGGAAAGCACATTGCAATTC+TGG | + | chr1_3:48562409-48562428 | Msa0122200:CDS | 45.0% |
| ATTGAAGATGAGCTTGGCCT+TGG | + | chr1_3:48562560-48562579 | Msa0122200:CDS | 45.0% | |
| !! | GAGCAAGGGTGTCTTTGGAT+TGG | + | chr1_3:48560353-48560372 | Msa0122200:intron | 50.0% |
| ! | AGGTTTTGCTCTGTGCTTCC+AGG | + | chr1_3:48560860-48560879 | Msa0122200:intron | 50.0% |
| ! | CAAGCGGTGTGGACTATATG+AGG | + | chr1_3:48560911-48560930 | Msa0122200:CDS | 50.0% |
| ! | CAGACGATGCTTTTGACGAG+TGG | + | chr1_3:48560949-48560968 | Msa0122200:CDS | 50.0% |
| CGGGGTGCAGTAAAATCAGA+AGG | - | chr1_3:48560984-48561003 | None:intergenic | 50.0% | |
| ! | TCTGATTTTACTGCACCCCG+TGG | + | chr1_3:48560984-48561003 | Msa0122200:CDS | 50.0% |
| CACCCCGTGGTGAATATGTT+AGG | + | chr1_3:48560997-48561016 | Msa0122200:CDS | 50.0% | |
| !! | CCTCTAAAGTCAGGAGTACC+AGG | - | chr1_3:48561936-48561955 | None:intergenic | 50.0% |
| CCTGGTACTCCTGACTTTAG+AGG | + | chr1_3:48561933-48561952 | Msa0122200:intron | 50.0% | |
| TCCGCGTTTATCAGAAGAGC+TGG | - | chr1_3:48562393-48562412 | None:intergenic | 50.0% | |
| !! | GCCGCAATCGTACTGATTCT+TGG | + | chr1_3:48562449-48562468 | Msa0122200:CDS | 50.0% |
| !! | GAAGATGAGCTTGGCCTTGG+TGG | + | chr1_3:48562563-48562582 | Msa0122200:CDS | 55.0% |
| !! | CTCAAGTGTCGGTGCTCCAG+AGG | + | chr1_3:48559936-48559955 | Msa0122200:intron | 60.0% |
| AGAGCTGGAAGCTGCAGAGC+AGG | - | chr1_3:48562378-48562397 | None:intergenic | 60.0% | |
| CCGAGGAGCCACCTGTTCCT+GGG | - | chr1_3:48560741-48560760 | None:intergenic | 65.0% | |
| CCCAGGAACAGGTGGCTCCT+CGG | + | chr1_3:48560738-48560757 | Msa0122200:intron | 65.0% | |
| TCCGAGGAGCCACCTGTTCC+TGG | - | chr1_3:48560742-48560761 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 48559716 | 48562674 | 48559716 | ID=Msa0122200;Name=Msa0122200 |
| chr1_3 | mRNA | 48559716 | 48562674 | 48559716 | ID=Msa0122200-mRNA-1;Parent=Msa0122200;Name=Msa0122200-mRNA-1;_AED=0.05;_eAED=0.05;_QI=7|1|1|1|1|1|4|76|214 |
| chr1_3 | exon | 48559716 | 48559783 | 48559716 | ID=Msa0122200-mRNA-1:exon:14651;Parent=Msa0122200-mRNA-1 |
| chr1_3 | exon | 48560029 | 48560204 | 48560029 | ID=Msa0122200-mRNA-1:exon:14652;Parent=Msa0122200-mRNA-1 |
| chr1_3 | exon | 48560882 | 48561077 | 48560882 | ID=Msa0122200-mRNA-1:exon:14653;Parent=Msa0122200-mRNA-1 |
| chr1_3 | exon | 48562387 | 48562674 | 48562387 | ID=Msa0122200-mRNA-1:exon:14654;Parent=Msa0122200-mRNA-1 |
| chr1_3 | five_prime_UTR | 48559716 | 48559722 | 48559716 | ID=Msa0122200-mRNA-1:five_prime_utr;Parent=Msa0122200-mRNA-1 |
| chr1_3 | CDS | 48559723 | 48559783 | 48559723 | ID=Msa0122200-mRNA-1:cds;Parent=Msa0122200-mRNA-1 |
| chr1_3 | CDS | 48560029 | 48560204 | 48560029 | ID=Msa0122200-mRNA-1:cds;Parent=Msa0122200-mRNA-1 |
| chr1_3 | CDS | 48560882 | 48561077 | 48560882 | ID=Msa0122200-mRNA-1:cds;Parent=Msa0122200-mRNA-1 |
| chr1_3 | CDS | 48562387 | 48562598 | 48562387 | ID=Msa0122200-mRNA-1:cds;Parent=Msa0122200-mRNA-1 |
| chr1_3 | three_prime_UTR | 48562599 | 48562674 | 48562599 | ID=Msa0122200-mRNA-1:three_prime_utr;Parent=Msa0122200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
