Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042270 | Msa0122200 | 0.800192 | 1.617061e-48 | -8.615850e-47 |
| Msa0042270 | Msa0364790 | 0.801532 | 8.613604e-49 | -8.615850e-47 |
| Msa0042270 | Msa0742150 | 0.819144 | 1.355367e-52 | -8.615850e-47 |
| Msa0042270 | Msa0775560 | 0.815397 | 9.438474e-52 | -8.615850e-47 |
| Msa0042270 | Msa0786070 | 0.811069 | 8.417284e-51 | -8.615850e-47 |
| Msa0042270 | Msa0812950 | 0.816027 | 6.834457e-52 | -8.615850e-47 |
| Msa0042270 | Msa0823440 | 0.805515 | 1.286262e-49 | -8.615850e-47 |
| Msa0042270 | Msa1023300 | 0.828927 | 6.849173e-55 | -8.615850e-47 |
| Msa0042270 | Msa1150790 | 0.814832 | 1.260277e-51 | -8.615850e-47 |
| Msa0042270 | Msa1150800 | 0.825231 | 5.247828e-54 | -8.615850e-47 |
| Msa0042270 | Msa1150810 | 0.804393 | 2.207080e-49 | -8.615850e-47 |
| Msa0042270 | Msa1220880 | 0.809712 | 1.652034e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042270 | MtrunA17_Chr1g0181951 | 93.925 | 214 | 13 | 0 | 1 | 214 | 1 | 214 | 4.87e-151 | 417 |
| Msa0042270 | MtrunA17_Chr7g0263331 | 57.000 | 200 | 80 | 1 | 20 | 213 | 27 | 226 | 1.66e-88 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042270 | AT3G53490.1 | 49.528 | 212 | 97 | 3 | 10 | 213 | 16 | 225 | 1.52e-66 | 204 |
| Msa0042270 | AT5G02720.2 | 41.475 | 217 | 116 | 3 | 7 | 213 | 10 | 225 | 1.47e-57 | 181 |
| Msa0042270 | AT5G02720.1 | 40.559 | 143 | 74 | 3 | 81 | 213 | 1 | 142 | 3.14e-32 | 114 |
Find 37 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTGATTCTTGGAGTATT+TGG | 0.236637 | 1_1:+73063250 | Msa0042270:CDS |
| GCCACAATTGTACTGATTCT+TGG | 0.259480 | 1_1:+73063241 | Msa0042270:CDS |
| CGGAAAACACATAGCAATTC+TGG | 0.270612 | 1_1:+73063201 | Msa0042270:CDS |
| TGCCCAGATTGCTTATCTTT+TGG | 0.289782 | 1_1:+73061442 | Msa0042270:CDS |
| CACCCCATGGTGAATATATT+AGG | 0.313891 | 1_1:+73061386 | Msa0042270:CDS |
| ATGATGAAAGTAAACAAAAT+AGG | 0.334194 | 1_1:+73063387 | Msa0042270:exon |
| TGCAAGAGAGATTCTAGAAT+TGG | 0.362470 | 1_1:-73060124 | None:intergenic |
| CTTACAATGGTCAACAATCT+TGG | 0.370180 | 1_1:+73060569 | Msa0042270:CDS |
| CCACCAAAAGATAAGCAATC+TGG | 0.397733 | 1_1:-73061445 | None:intergenic |
| TATTTGGTGCATATAAGTTC+TGG | 0.436563 | 1_1:+73063266 | Msa0042270:CDS |
| ACCATGGGGTGCAGTAAAAT+CGG | 0.445451 | 1_1:-73061374 | None:intergenic |
| ATTGAAGATGAGCTTGGCCT+TGG | 0.469493 | 1_1:+73063352 | Msa0042270:CDS |
| GAAGATGAGCTTGGCCTTGG+TGG | 0.473743 | 1_1:+73063355 | Msa0042270:CDS |
| GTTAGTTATACCTGGAAAGT+TGG | 0.478102 | 1_1:-73060163 | None:intergenic |
| AATAGGCCTTGTATAGAGTA+AGG | 0.480676 | 1_1:+73063404 | Msa0042270:three_prime_UTR |
| ATATATTAGGTTCAAGGAAA+AGG | 0.485511 | 1_1:+73061399 | Msa0042270:CDS |
| CAAGCGGTGTGGACTATATG+AGG | 0.491768 | 1_1:+73061300 | Msa0042270:CDS |
| TGGTGAATATATTAGGTTCA+AGG | 0.497374 | 1_1:+73061393 | Msa0042270:CDS |
| CTGTGTATTTCCTTTGTGAA+GGG | 0.506113 | 1_1:+73060497 | Msa0042270:CDS |
| TCCGCGTTTATCAGAAGAGC+TGG | 0.509867 | 1_1:-73063182 | None:intergenic |
| GAACCTAATATATTCACCAT+GGG | 0.527997 | 1_1:-73061389 | None:intergenic |
| ACTGTGTATTTCCTTTGTGA+AGG | 0.528274 | 1_1:+73060496 | Msa0042270:CDS |
| CACCAAAAGATAAGCAATCT+GGG | 0.530247 | 1_1:-73061444 | None:intergenic |
| GGTTAACCTTACTCTATACA+AGG | 0.534233 | 1_1:-73063410 | None:intergenic |
| CTAGAATTGGACGCAGACAT+TGG | 0.541303 | 1_1:-73060111 | None:intergenic |
| CAATGGTCAACAATCTTGGA+AGG | 0.560344 | 1_1:+73060573 | Msa0042270:CDS |
| CATTTCGTTTATGCTTACAA+TGG | 0.583603 | 1_1:+73060556 | Msa0042270:CDS |
| TGTGTATTTCCTTTGTGAAG+GGG | 0.585526 | 1_1:+73060498 | Msa0042270:CDS |
| TCCAAGAATCAGTACAATTG+TGG | 0.591626 | 1_1:-73063242 | None:intergenic |
| TGAACCTAATATATTCACCA+TGG | 0.605098 | 1_1:-73061390 | None:intergenic |
| GATGACATTGAAGATGAGCT+TGG | 0.616971 | 1_1:+73063346 | Msa0042270:CDS |
| TCTTGTTCTCCCCTTCACAA+AGG | 0.626803 | 1_1:-73060507 | None:intergenic |
| ATCATATTATCGCACCACCA+AGG | 0.646566 | 1_1:-73063369 | None:intergenic |
| TGGGGTGCAGTAAAATCGGA+AGG | 0.648511 | 1_1:-73061370 | None:intergenic |
| AGATCTTCGAAAAGCACGAG+TGG | 0.676921 | 1_1:+73060458 | Msa0042270:CDS |
| TCCAGCTCTTCTGATAAACG+CGG | 0.697228 | 1_1:+73063181 | Msa0042270:CDS |
| AACCTAATATATTCACCATG+GGG | 0.715772 | 1_1:-73061388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATGTCATAAATTTTA+TGG | + | chr1_1:73063070-73063089 | Msa0042270:intron | 10.0% |
| !!! | TACTTATGTATTTCTTTTTT+AGG | - | chr1_1:73060927-73060946 | None:intergenic | 15.0% |
| !!! | TTAAATTCATTAGACTTTTA+AGG | + | chr1_1:73061878-73061897 | Msa0042270:intron | 15.0% |
| !! | TTTATAATAAAAATCCTGTT+TGG | - | chr1_1:73062792-73062811 | None:intergenic | 15.0% |
| !!! | ATAAATTTTATGGTAAATCA+AGG | + | chr1_1:73063080-73063099 | Msa0042270:intron | 15.0% |
| !! | CTTATAGCTTATATGAAAAT+AGG | + | chr1_1:73060852-73060871 | Msa0042270:intron | 20.0% |
| !! | GTAATAAAGAATATTCATTG+TGG | - | chr1_1:73061510-73061529 | None:intergenic | 20.0% |
| !!! | TAAGTAAACAATTTTTGCAA+TGG | - | chr1_1:73061605-73061624 | None:intergenic | 20.0% |
| !! | GATGAAAGAGAAAAATAAAA+TGG | + | chr1_1:73061908-73061927 | Msa0042270:intron | 20.0% |
| !!! | TAAGACGTTTTATTTATACA+GGG | - | chr1_1:73061988-73062007 | None:intergenic | 20.0% |
| !!! | TTAAGACGTTTTATTTATAC+AGG | - | chr1_1:73061989-73062008 | None:intergenic | 20.0% |
| !! | TTCACATATTATTTAGTATC+AGG | + | chr1_1:73062121-73062140 | Msa0042270:intron | 20.0% |
| !! | TCACATATTATTTAGTATCA+GGG | + | chr1_1:73062122-73062141 | Msa0042270:intron | 20.0% |
| !!! | TTCATTTTTATCCTATAAAG+TGG | - | chr1_1:73062204-73062223 | None:intergenic | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | + | chr1_1:73062479-73062498 | Msa0042270:intron | 20.0% |
| !! | ACTAAAATAGACATAGTTAA+AGG | + | chr1_1:73062538-73062557 | Msa0042270:intron | 20.0% |
| !!! | CTTTTCCTTCATTTTTTTTA+TGG | + | chr1_1:73062822-73062841 | Msa0042270:intron | 20.0% |
| !! | TTCTTCCATAAAAAAAATGA+AGG | - | chr1_1:73062830-73062849 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTATGGAAGAAA+AGG | + | chr1_1:73062831-73062850 | Msa0042270:intron | 20.0% |
| !!! | TATTGTATTGATTAAAGAGA+AGG | + | chr1_1:73062896-73062915 | Msa0042270:intron | 20.0% |
| !!! | TTTTTGAAGTTATTTGAAGA+TGG | + | chr1_1:73063322-73063341 | Msa0042270:CDS | 20.0% |
| !! | ATGATGAAAGTAAACAAAAT+AGG | + | chr1_1:73063387-73063406 | Msa0042270:exon | 20.0% |
| !!! | TTTGCATAAACAAAATTTTG+TGG | - | chr1_1:73063434-73063453 | None:intergenic | 20.0% |
| ! | CATTTGAATTGAATTGTACA+GGG | + | chr1_1:73060398-73060417 | Msa0042270:intron | 25.0% |
| ! | TCTGTTTACACTTTCAAATT+TGG | + | chr1_1:73060706-73060725 | Msa0042270:intron | 25.0% |
| ! | GTTGTATATTCTTAGAGTAA+GGG | + | chr1_1:73060728-73060747 | Msa0042270:intron | 25.0% |
| ! | TGAATGATACACTTATTGTT+TGG | - | chr1_1:73060983-73061002 | None:intergenic | 25.0% |
| !! | TTTTCAATCTTCATCATGTT+TGG | + | chr1_1:73061189-73061208 | Msa0042270:intron | 25.0% |
| ! | TTTCAATCTTCATCATGTTT+GGG | + | chr1_1:73061190-73061209 | Msa0042270:intron | 25.0% |
| ! | ATATATTAGGTTCAAGGAAA+AGG | + | chr1_1:73061399-73061418 | Msa0042270:CDS | 25.0% |
| !! | TATCTAGTTGATGTATTCAT+TGG | - | chr1_1:73061550-73061569 | None:intergenic | 25.0% |
| ! | GAATACATCAACTAGATATT+TGG | + | chr1_1:73061552-73061571 | Msa0042270:intron | 25.0% |
| ! | ATCAACTAGATATTTGGAAA+AGG | + | chr1_1:73061558-73061577 | Msa0042270:intron | 25.0% |
| ! | TCAACTAGATATTTGGAAAA+GGG | + | chr1_1:73061559-73061578 | Msa0042270:intron | 25.0% |
| !!! | ATATTTGGAAAAGGGTATTT+GGG | + | chr1_1:73061567-73061586 | Msa0042270:intron | 25.0% |
| ! | GAGAATCATTGAACAAAATT+GGG | - | chr1_1:73061727-73061746 | None:intergenic | 25.0% |
| ! | AGAGAATCATTGAACAAAAT+TGG | - | chr1_1:73061728-73061747 | None:intergenic | 25.0% |
| ! | TTGAATACCTAAGTTATTCA+TGG | - | chr1_1:73061836-73061855 | None:intergenic | 25.0% |
| ! | TCAAAGCAAAAAGACAATAT+AGG | - | chr1_1:73061958-73061977 | None:intergenic | 25.0% |
| !!! | AAGACGTTTTATTTATACAG+GGG | - | chr1_1:73061987-73062006 | None:intergenic | 25.0% |
| ! | AACTAAACCTTCAATTCAAA+TGG | - | chr1_1:73062072-73062091 | None:intergenic | 25.0% |
| ! | AAATAATATGTGAAGCACAA+GGG | - | chr1_1:73062115-73062134 | None:intergenic | 25.0% |
| ! | TAAATAATATGTGAAGCACA+AGG | - | chr1_1:73062116-73062135 | None:intergenic | 25.0% |
| ! | AAAAATGAACTTATGACAGT+TGG | + | chr1_1:73062215-73062234 | Msa0042270:intron | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | chr1_1:73062435-73062454 | Msa0042270:intron | 25.0% |
| ! | AGTTAAAGGAGAATTGATAA+AGG | + | chr1_1:73062552-73062571 | Msa0042270:intron | 25.0% |
| ! | GTTAAAGGAGAATTGATAAA+GGG | + | chr1_1:73062553-73062572 | Msa0042270:intron | 25.0% |
| ! | TAATAAAGATTACCATGCAA+AGG | - | chr1_1:73063118-73063137 | None:intergenic | 25.0% |
| GCATTTGAATTGAATTGTAC+AGG | + | chr1_1:73060397-73060416 | Msa0042270:intron | 30.0% | |
| CATTTCGTTTATGCTTACAA+TGG | + | chr1_1:73060556-73060575 | Msa0042270:CDS | 30.0% | |
| ! | AATTGATTGTGTCCATTTTG+AGG | + | chr1_1:73060631-73060650 | Msa0042270:intron | 30.0% |
| TCAAATGAACTACCTCAAAA+TGG | - | chr1_1:73060646-73060665 | None:intergenic | 30.0% | |
| GGTTGTATATTCTTAGAGTA+AGG | + | chr1_1:73060727-73060746 | Msa0042270:intron | 30.0% | |
| AGTCTCACATGTATTTATGT+CGG | - | chr1_1:73060786-73060805 | None:intergenic | 30.0% | |
| AATTACTCAAAGTTCATGTG+TGG | - | chr1_1:73061065-73061084 | None:intergenic | 30.0% | |
| ! | TTTATCGACCAAAATTTTCG+AGG | + | chr1_1:73061110-73061129 | Msa0042270:intron | 30.0% |
| TTGAGAAGTTGCTTAAAATC+TGG | - | chr1_1:73061270-73061289 | None:intergenic | 30.0% | |
| TCTCAAGTAAAAATTGCAAG+CGG | + | chr1_1:73061284-73061303 | Msa0042270:CDS | 30.0% | |
| AACCTAATATATTCACCATG+GGG | - | chr1_1:73061391-73061410 | None:intergenic | 30.0% | |
| GAACCTAATATATTCACCAT+GGG | - | chr1_1:73061392-73061411 | None:intergenic | 30.0% | |
| TGAACCTAATATATTCACCA+TGG | - | chr1_1:73061393-73061412 | None:intergenic | 30.0% | |
| TGGTGAATATATTAGGTTCA+AGG | + | chr1_1:73061393-73061412 | Msa0042270:CDS | 30.0% | |
| !! | GATATTTGGAAAAGGGTATT+TGG | + | chr1_1:73061566-73061585 | Msa0042270:intron | 30.0% |
| TGTTGACATAAATGCAAAAG+AGG | - | chr1_1:73061771-73061790 | None:intergenic | 30.0% | |
| TTGATCACCATGAATAACTT+AGG | + | chr1_1:73061826-73061845 | Msa0042270:intron | 30.0% | |
| CAAAAAGACAATATAGGAGA+TGG | - | chr1_1:73061952-73061971 | None:intergenic | 30.0% | |
| TATCCAACCATTTGAATTGA+AGG | + | chr1_1:73062062-73062081 | Msa0042270:intron | 30.0% | |
| AAACCTTCAATTCAAATGGT+TGG | - | chr1_1:73062068-73062087 | None:intergenic | 30.0% | |
| AATAATATGTGAAGCACAAG+GGG | - | chr1_1:73062114-73062133 | None:intergenic | 30.0% | |
| GAATTGATAAAGGGCAATAA+AGG | + | chr1_1:73062562-73062581 | Msa0042270:intron | 30.0% | |
| GGGCAATAAAGGAAAATAAT+AGG | + | chr1_1:73062573-73062592 | Msa0042270:intron | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | chr1_1:73062728-73062747 | Msa0042270:intron | 30.0% |
| ! | GAATCTATACTTTTGCTAGA+TGG | + | chr1_1:73062868-73062887 | Msa0042270:intron | 30.0% |
| !!! | ATAGCAATTCTGGTTTTTCT+TGG | + | chr1_1:73063211-73063230 | Msa0042270:CDS | 30.0% |
| !! | TATTTGGTGCATATAAGTTC+TGG | + | chr1_1:73063266-73063285 | Msa0042270:CDS | 30.0% |
| ATAACTTCAAAAACTGAGCT+TGG | - | chr1_1:73063315-73063334 | None:intergenic | 30.0% | |
| !! | TGCAAGAGAGATTCTAGAAT+TGG | - | chr1_1:73060127-73060146 | None:intergenic | 35.0% |
| GTTAGTTATACCTGGAAAGT+TGG | - | chr1_1:73060166-73060185 | None:intergenic | 35.0% | |
| GAGAAGAAGTTAGTTATACC+TGG | - | chr1_1:73060174-73060193 | None:intergenic | 35.0% | |
| ACTGTGTATTTCCTTTGTGA+AGG | + | chr1_1:73060496-73060515 | Msa0042270:CDS | 35.0% | |
| CTGTGTATTTCCTTTGTGAA+GGG | + | chr1_1:73060497-73060516 | Msa0042270:CDS | 35.0% | |
| TGTGTATTTCCTTTGTGAAG+GGG | + | chr1_1:73060498-73060517 | Msa0042270:CDS | 35.0% | |
| CTTACAATGGTCAACAATCT+TGG | + | chr1_1:73060569-73060588 | Msa0042270:CDS | 35.0% | |
| AAATACATGTGAGACTGCTT+TGG | + | chr1_1:73060790-73060809 | Msa0042270:intron | 35.0% | |
| ! | AAATACCCTACTATTTTGCG+AGG | - | chr1_1:73061147-73061166 | None:intergenic | 35.0% |
| CACCAAAAGATAAGCAATCT+GGG | - | chr1_1:73061447-73061466 | None:intergenic | 35.0% | |
| ! | TTTTTGCAATGGCATCAACT+GGG | - | chr1_1:73061594-73061613 | None:intergenic | 35.0% |
| ! | ATTTTTGCAATGGCATCAAC+TGG | - | chr1_1:73061595-73061614 | None:intergenic | 35.0% |
| ! | ATTCTCTCAATCTCTAGTTC+TGG | + | chr1_1:73061658-73061677 | Msa0042270:intron | 35.0% |
| !! | GCTGATTTGAAAATTAACCG+TGG | + | chr1_1:73062039-73062058 | Msa0042270:intron | 35.0% |
| ATTCAAATGGTTGGATACCA+CGG | - | chr1_1:73062059-73062078 | None:intergenic | 35.0% | |
| TATCAGGGAACACAAAAGTT+GGG | + | chr1_1:73062137-73062156 | Msa0042270:intron | 35.0% | |
| TGGGACAACATTTGACTAAT+TGG | + | chr1_1:73062156-73062175 | Msa0042270:intron | 35.0% | |
| ! | ATAAAGTGGACTCAGTTAAG+AGG | - | chr1_1:73062190-73062209 | None:intergenic | 35.0% |
| CTTAACTGAGTCCACTTTAT+AGG | + | chr1_1:73062190-73062209 | Msa0042270:intron | 35.0% | |
| ATGAACTTATGACAGTTGGT+TGG | + | chr1_1:73062219-73062238 | Msa0042270:intron | 35.0% | |
| ! | CCAAATTTGTTCAAGTAGAC+TGG | - | chr1_1:73062314-73062333 | None:intergenic | 35.0% |
| CCAGTCTACTTGAACAAATT+TGG | + | chr1_1:73062311-73062330 | Msa0042270:intron | 35.0% | |
| GTCTACTTGAACAAATTTGG+TGG | + | chr1_1:73062314-73062333 | Msa0042270:intron | 35.0% | |
| AACCAAACACACACCTAAAA+TGG | - | chr1_1:73062348-73062367 | None:intergenic | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr1_1:73062635-73062654 | Msa0042270:intron | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | - | chr1_1:73062714-73062733 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | + | chr1_1:73062712-73062731 | Msa0042270:intron | 35.0% |
| ! | GCACTGTAGAAAATTGCTTT+TGG | + | chr1_1:73062750-73062769 | Msa0042270:intron | 35.0% |
| !! | TGTAGAAAATTGCTTTTGGC+TGG | + | chr1_1:73062754-73062773 | Msa0042270:intron | 35.0% |
| !! | GTAGAAAATTGCTTTTGGCT+GGG | + | chr1_1:73062755-73062774 | Msa0042270:intron | 35.0% |
| ! | TCTATACTTTTGCTAGATGG+AGG | + | chr1_1:73062871-73062890 | Msa0042270:intron | 35.0% |
| ! | GATTAAAGAGAAGGCACATA+AGG | + | chr1_1:73062905-73062924 | Msa0042270:intron | 35.0% |
| TAGTGTGAACTTTGATGTAC+TGG | + | chr1_1:73062974-73062993 | Msa0042270:intron | 35.0% | |
| ! | AACTTTGATGTACTGGTAGT+AGG | + | chr1_1:73062981-73063000 | Msa0042270:intron | 35.0% |
| GCTAAGAAATGCAACAAAGT+GGG | - | chr1_1:73063026-73063045 | None:intergenic | 35.0% | |
| TGCTAAGAAATGCAACAAAG+TGG | - | chr1_1:73063027-73063046 | None:intergenic | 35.0% | |
| TCCAAGAATCAGTACAATTG+TGG | - | chr1_1:73063245-73063264 | None:intergenic | 35.0% | |
| !! | GTACTGATTCTTGGAGTATT+TGG | + | chr1_1:73063250-73063269 | Msa0042270:CDS | 35.0% |
| ! | AATAGGCCTTGTATAGAGTA+AGG | + | chr1_1:73063404-73063423 | Msa0042270:three_prime_UTR | 35.0% |
| GGTTAACCTTACTCTATACA+AGG | - | chr1_1:73063413-73063432 | None:intergenic | 35.0% | |
| CACATGCATCATACACAATG+CGG | + | chr1_1:73060246-73060265 | Msa0042270:intron | 40.0% | |
| ACACTTCGATTACAAACCTC+TGG | - | chr1_1:73060346-73060365 | None:intergenic | 40.0% | |
| CAATGGTCAACAATCTTGGA+AGG | + | chr1_1:73060573-73060592 | Msa0042270:CDS | 40.0% | |
| !! | TCTTAGAGTAAGGGTGTCTT+TGG | + | chr1_1:73060737-73060756 | Msa0042270:intron | 40.0% |
| !! | AGACTGCTTTGGATAGCTTT+TGG | + | chr1_1:73060801-73060820 | Msa0042270:intron | 40.0% |
| GAAGATAGCAGTTACTCGAA+TGG | - | chr1_1:73061043-73061062 | None:intergenic | 40.0% | |
| !! | GACCAAAATTTTCGAGGAAC+AGG | + | chr1_1:73061116-73061135 | Msa0042270:intron | 40.0% |
| AGTAAAAATTGCAAGCGGTG+TGG | + | chr1_1:73061289-73061308 | Msa0042270:CDS | 40.0% | |
| ! | AGACGATACTTTTGACGAGT+GGG | + | chr1_1:73061339-73061358 | Msa0042270:CDS | 40.0% |
| CACCCCATGGTGAATATATT+AGG | + | chr1_1:73061386-73061405 | Msa0042270:CDS | 40.0% | |
| ! | TGCCCAGATTGCTTATCTTT+TGG | + | chr1_1:73061442-73061461 | Msa0042270:CDS | 40.0% |
| CCACCAAAAGATAAGCAATC+TGG | - | chr1_1:73061448-73061467 | None:intergenic | 40.0% | |
| ! | CCAGATTGCTTATCTTTTGG+TGG | + | chr1_1:73061445-73061464 | Msa0042270:CDS | 40.0% |
| GTATCAGGGAACACAAAAGT+TGG | + | chr1_1:73062136-73062155 | Msa0042270:intron | 40.0% | |
| ! | TAAAGTCAGGAGTACAAGGT+AGG | - | chr1_1:73062279-73062298 | None:intergenic | 40.0% |
| ! | GGTGGATCTAACACCATTTT+AGG | + | chr1_1:73062332-73062351 | Msa0042270:intron | 40.0% |
| !! | CACCATTTTAGGTGTGTGTT+TGG | + | chr1_1:73062343-73062362 | Msa0042270:intron | 40.0% |
| AGCTAGGATTTGTAGCTTCA+TGG | + | chr1_1:73062651-73062670 | Msa0042270:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr1_1:73062665-73062684 | Msa0042270:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr1_1:73062668-73062687 | Msa0042270:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | - | chr1_1:73062719-73062738 | None:intergenic | 40.0% | |
| CGGAAAACACATAGCAATTC+TGG | + | chr1_1:73063201-73063220 | Msa0042270:CDS | 40.0% | |
| !!! | TCTGGTTTTTCTTGGTGCTT+TGG | + | chr1_1:73063219-73063238 | Msa0042270:CDS | 40.0% |
| !! | GCCACAATTGTACTGATTCT+TGG | + | chr1_1:73063241-73063260 | Msa0042270:CDS | 40.0% |
| GATGACATTGAAGATGAGCT+TGG | + | chr1_1:73063346-73063365 | Msa0042270:CDS | 40.0% | |
| ATCATATTATCGCACCACCA+AGG | - | chr1_1:73063372-73063391 | None:intergenic | 40.0% | |
| CTAGAATTGGACGCAGACAT+TGG | - | chr1_1:73060114-73060133 | None:intergenic | 45.0% | |
| ! | GTTTTCTTCGCCAACTTTCC+AGG | + | chr1_1:73060153-73060172 | Msa0042270:CDS | 45.0% |
| ! | AGATCTTCGAAAAGCACGAG+TGG | + | chr1_1:73060458-73060477 | Msa0042270:CDS | 45.0% |
| TCTTGTTCTCCCCTTCACAA+AGG | - | chr1_1:73060510-73060529 | None:intergenic | 45.0% | |
| !! | GAGTAAGGGTGTCTTTGGAT+TGG | + | chr1_1:73060742-73060761 | Msa0042270:intron | 45.0% |
| ! | CGCCTGTTCCTCGAAAATTT+TGG | - | chr1_1:73061121-73061140 | None:intergenic | 45.0% |
| CGAGTCCTCGCAAAATAGTA+GGG | + | chr1_1:73061139-73061158 | Msa0042270:intron | 45.0% | |
| ! | CAGACGATACTTTTGACGAG+TGG | + | chr1_1:73061338-73061357 | Msa0042270:CDS | 45.0% |
| ACCATGGGGTGCAGTAAAAT+CGG | - | chr1_1:73061377-73061396 | None:intergenic | 45.0% | |
| !! | CCTCTAAAGTCAGGAGTACA+AGG | - | chr1_1:73062283-73062302 | None:intergenic | 45.0% |
| CCTTGTACTCCTGACTTTAG+AGG | + | chr1_1:73062280-73062299 | Msa0042270:intron | 45.0% | |
| !! | GAGTTGACTCCTCTAAAGTC+AGG | - | chr1_1:73062292-73062311 | None:intergenic | 45.0% |
| AAGACTGATGCTCCTTTGCA+TGG | + | chr1_1:73063103-73063122 | Msa0042270:intron | 45.0% | |
| TCCAGCTCTTCTGATAAACG+CGG | + | chr1_1:73063181-73063200 | Msa0042270:CDS | 45.0% | |
| ATTGAAGATGAGCTTGGCCT+TGG | + | chr1_1:73063352-73063371 | Msa0042270:CDS | 45.0% | |
| GCGAGTCCTCGCAAAATAGT+AGG | + | chr1_1:73061138-73061157 | Msa0042270:intron | 50.0% | |
| ! | CAAGCGGTGTGGACTATATG+AGG | + | chr1_1:73061300-73061319 | Msa0042270:CDS | 50.0% |
| TGGGGTGCAGTAAAATCGGA+AGG | - | chr1_1:73061373-73061392 | None:intergenic | 50.0% | |
| ! | TCCGATTTTACTGCACCCCA+TGG | + | chr1_1:73061373-73061392 | Msa0042270:CDS | 50.0% |
| TCCGCGTTTATCAGAAGAGC+TGG | - | chr1_1:73063185-73063204 | None:intergenic | 50.0% | |
| GTTAGTGCCGTCGCAAGTGT+CGG | + | chr1_1:73060316-73060335 | Msa0042270:intron | 55.0% | |
| GGGCAGAAGCTGAACCAAAC+AGG | + | chr1_1:73062775-73062794 | Msa0042270:intron | 55.0% | |
| !! | GAAGATGAGCTTGGCCTTGG+TGG | + | chr1_1:73063355-73063374 | Msa0042270:CDS | 55.0% |
| !! | TGGAGCACCGACACTTGCGA+CGG | - | chr1_1:73060326-73060345 | None:intergenic | 60.0% |
| !! | CGCAAGTGTCGGTGCTCCAG+AGG | + | chr1_1:73060327-73060346 | Msa0042270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 73060107 | 73063465 | 73060107 | ID=Msa0042270;Name=Msa0042270 |
| chr1_1 | mRNA | 73060107 | 73063465 | 73060107 | ID=Msa0042270-mRNA-1;Parent=Msa0042270;Name=Msa0042270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=7|1|1|1|1|1|4|75|214 |
| chr1_1 | exon | 73060107 | 73060174 | 73060107 | ID=Msa0042270-mRNA-1:exon:24359;Parent=Msa0042270-mRNA-1 |
| chr1_1 | exon | 73060419 | 73060594 | 73060419 | ID=Msa0042270-mRNA-1:exon:24360;Parent=Msa0042270-mRNA-1 |
| chr1_1 | exon | 73061271 | 73061466 | 73061271 | ID=Msa0042270-mRNA-1:exon:24361;Parent=Msa0042270-mRNA-1 |
| chr1_1 | exon | 73063179 | 73063465 | 73063179 | ID=Msa0042270-mRNA-1:exon:24362;Parent=Msa0042270-mRNA-1 |
| chr1_1 | five_prime_UTR | 73060107 | 73060113 | 73060107 | ID=Msa0042270-mRNA-1:five_prime_utr;Parent=Msa0042270-mRNA-1 |
| chr1_1 | CDS | 73060114 | 73060174 | 73060114 | ID=Msa0042270-mRNA-1:cds;Parent=Msa0042270-mRNA-1 |
| chr1_1 | CDS | 73060419 | 73060594 | 73060419 | ID=Msa0042270-mRNA-1:cds;Parent=Msa0042270-mRNA-1 |
| chr1_1 | CDS | 73061271 | 73061466 | 73061271 | ID=Msa0042270-mRNA-1:cds;Parent=Msa0042270-mRNA-1 |
| chr1_1 | CDS | 73063179 | 73063390 | 73063179 | ID=Msa0042270-mRNA-1:cds;Parent=Msa0042270-mRNA-1 |
| chr1_1 | three_prime_UTR | 73063391 | 73063465 | 73063391 | ID=Msa0042270-mRNA-1:three_prime_utr;Parent=Msa0042270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
