AlfalfaGEDB | Msa0122990

M. sativa cultivar zhongmu-4 / Msa0122990

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032259 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0080188 GO:0090304 GO:1901360
PFAM: PF10440.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122990	XP_013468439.1	96.570	758	26	0	1	758	1	758	0.0	1526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122990	sp\|Q9FNC7\|SUVR2_ARATH	40.228	788	347	21	5	749	3	709	3.58e-166	499

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122990	A0A072VLI9	96.570	758	26	0	1	758	1	758	0.0	1526

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TFs/TRs:

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Gene ID	Type	Classification
Msa0122990	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027240	Msa0122990	0.812432	4.253193e-51	-8.615850e-47
Msa0122990	Msa0167510	0.801516	8.679071e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122990	MtrunA17_Chr1g0183321	96.570	758	26	0	1	758	1	758	0.0	1526
Msa0122990	MtrunA17_Chr7g0262001	51.407	782	276	21	5	755	3	711	0.0	657
Msa0122990	MtrunA17_Chr1g0190311	59.337	332	130	5	418	746	315	644	4.48e-143	435
Msa0122990	MtrunA17_Chr1g0190311	36.607	112	59	3	6	113	4	107	1.44e-11	68.2
Msa0122990	MtrunA17_Chr8g0392541	50.698	215	82	6	418	629	106	299	3.27e-62	211
Msa0122990	MtrunA17_Chr5g0399801	30.303	330	160	11	428	741	809	1084	1.57e-32	135
Msa0122990	MtrunA17_Chr7g0255181	30.723	332	147	11	430	743	436	702	3.13e-30	127
Msa0122990	MtrunA17_Chr3g0080761	28.783	337	168	10	428	742	374	660	6.45e-30	126
Msa0122990	MtrunA17_Chr8g0373821	37.158	183	103	5	561	741	361	533	1.43e-28	120
Msa0122990	MtrunA17_Chr8g0354821	27.976	336	173	10	428	744	401	686	4.41e-28	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0122990	AT5G43990.3	40.228	788	347	21	5	749	3	709	3.64e-167	499
Msa0122990	AT5G43990.11	40.228	788	347	21	5	749	3	709	3.64e-167	499
Msa0122990	AT5G43990.1	40.228	788	347	21	5	749	3	709	3.64e-167	499
Msa0122990	AT5G43990.4	40.228	788	347	21	5	749	3	709	3.64e-167	499
Msa0122990	AT5G43990.9	40.228	788	347	21	5	749	26	732	5.80e-167	499
Msa0122990	AT5G43990.2	40.228	788	347	21	5	749	26	732	5.80e-167	499
Msa0122990	AT5G43990.16	40.337	771	350	19	5	749	3	689	3.47e-164	491
Msa0122990	AT5G43990.5	40.337	771	350	19	5	749	3	689	3.47e-164	491
Msa0122990	AT5G43990.17	40.337	771	350	19	5	749	3	689	3.47e-164	491
Msa0122990	AT5G43990.14	40.337	771	350	19	5	749	3	689	3.47e-164	491

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Find 202 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGTCATTGCCTGGA+GGG	0.550126	1_3:-49892313	None:intergenic
AAACTGTTTCAGTGCAAATG+TGG	0.701775	1_3:+49896986	Msa0122990:CDS
AAAGAATGTTGGAGCAAATG+TGG	0.629844	1_3:+49894811	Msa0122990:CDS
AAATCTAGCAATGTTGCCAA+AGG	0.600969	1_3:-49895325	None:intergenic
AAATGAATTAACCTTCATTT+TGG	0.184016	1_3:+49897545	Msa0122990:three_prime_UTR
AAATGGACCTAGGTTAGAAT+CGG	0.489823	1_3:-49891634	None:intergenic
AAATGTTAACAGAAGCATCT+CGG	0.583016	1_3:-49894516	None:intergenic
AAATTTGCATATACAGCTCA+AGG	0.570666	1_3:+49894637	Msa0122990:CDS
AACAAGACCCAGCTTACTTC+AGG	0.353126	1_3:+49897415	Msa0122990:three_prime_UTR
AACAGTTCACTGATTATAAA+TGG	0.304069	1_3:+49892260	Msa0122990:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAAAAACCAAGACAC+CGG	-	chr1_3:49892071-49892090	None:intergenic	30.0%
TTGGATGCTATATTTGAAGA+AGG	+	chr1_3:49892435-49892454	Msa0122990:CDS	30.0%
TGCAAACTTACTTCTATTGT+TGG	+	chr1_3:49892522-49892541	Msa0122990:intron	30.0%
TTTGGCATCTTAGTTGTAAT+TGG	+	chr1_3:49893095-49893114	Msa0122990:intron	30.0%
TTAGTTGTAATTGGCATGTT+TGG	+	chr1_3:49893104-49893123	Msa0122990:intron	30.0%
CATTTAGCAAAACCATAGTT+GGG	-	chr1_3:49893235-49893254	None:intergenic	30.0%
ACATTTAGCAAAACCATAGT+TGG	-	chr1_3:49893236-49893255	None:intergenic	30.0%
AACATGATGCAATTATGCAA+TGG	-	chr1_3:49893416-49893435	None:intergenic	30.0%
AGTTTGCATAAGATACTCTA+TGG	+	chr1_3:49893535-49893554	Msa0122990:intron	30.0%
AAATAATTGGTCAGATTCAG+AGG	-	chr1_3:49893596-49893615	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	49891338	49897664	49891338	ID=Msa0122990;Name=Msa0122990
chr1_3	mRNA	49891338	49897664	49891338	ID=Msa0122990-mRNA-1;Parent=Msa0122990;Name=Msa0122990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=223\|1\|1\|1\|0.8\|0.72\|11\|305\|758
chr1_3	exon	49891338	49891461	49891338	ID=Msa0122990-mRNA-1:exon:15208;Parent=Msa0122990-mRNA-1
chr1_3	exon	49891576	49891648	49891576	ID=Msa0122990-mRNA-1:exon:15209;Parent=Msa0122990-mRNA-1
chr1_3	exon	49892253	49892470	49892253	ID=Msa0122990-mRNA-1:exon:15210;Parent=Msa0122990-mRNA-1
chr1_3	exon	49892559	49892594	49892559	ID=Msa0122990-mRNA-1:exon:15211;Parent=Msa0122990-mRNA-1
chr1_3	exon	49892698	49893055	49892698	ID=Msa0122990-mRNA-1:exon:15212;Parent=Msa0122990-mRNA-1
chr1_3	exon	49893711	49894891	49893711	ID=Msa0122990-mRNA-1:exon:15213;Parent=Msa0122990-mRNA-1
chr1_3	exon	49895096	49895358	49895096	ID=Msa0122990-mRNA-1:exon:15214;Parent=Msa0122990-mRNA-1
chr1_3	exon	49896375	49896441	49896375	ID=Msa0122990-mRNA-1:exon:15215;Parent=Msa0122990-mRNA-1
chr1_3	exon	49896558	49896608	49896558	ID=Msa0122990-mRNA-1:exon:15216;Parent=Msa0122990-mRNA-1
chr1_3	exon	49896947	49897043	49896947	ID=Msa0122990-mRNA-1:exon:15217;Parent=Msa0122990-mRNA-1
chr1_3	exon	49897328	49897664	49897328	ID=Msa0122990-mRNA-1:exon:15218;Parent=Msa0122990-mRNA-1
chr1_3	five_prime_UTR	49891338	49891461	49891338	ID=Msa0122990-mRNA-1:five_prime_utr;Parent=Msa0122990-mRNA-1
chr1_3	five_prime_UTR	49891576	49891648	49891576	ID=Msa0122990-mRNA-1:five_prime_utr;Parent=Msa0122990-mRNA-1
chr1_3	five_prime_UTR	49892253	49892278	49892253	ID=Msa0122990-mRNA-1:five_prime_utr;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49892279	49892470	49892279	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49892559	49892594	49892559	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49892698	49893055	49892698	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49893711	49894891	49893711	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49895096	49895358	49895096	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49896375	49896441	49896375	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49896558	49896608	49896558	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49896947	49897043	49896947	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	CDS	49897328	49897359	49897328	ID=Msa0122990-mRNA-1:cds;Parent=Msa0122990-mRNA-1
chr1_3	three_prime_UTR	49897360	49897664	49897360	ID=Msa0122990-mRNA-1:three_prime_utr;Parent=Msa0122990-mRNA-1

Gene Sequence

>Msa0122990

ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTCCAGGCAATGACAGAGTTTGGGATTCCTGAAGCAAAAGTGAAACGGGCGCTAAAGAAACTCCTTAAGTTGTTTGATAAAAACTGGCAACTTATCGAGGAAGAGAACTATAGAGCTTTATTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGAGCCAGAACCACAAAAGAAAAACAAGAGAGTGAATGAAGAAGAGATGGAGGCCGAGGAAGCTCCGTTAAATGTTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCGTTGAAGAAGTCTCACATAGAAAAGGACACAGCACTTGAAGGCGGCTCCTCACAGCAGCCTCGAAACAACGCAGTGTCATCTGATGTGAATGGGAGGGTTGCAGCACGTCCCATGCGAGATGCTAGTTATGACAGGGGAAAGCAACCTGCATCACCACATGCTTCTTATGAATTGACCGTACCTAAATCTGAGCCCGTTGATGAGGAAGATTATGAGCGGCGTCCCCTTGCAATGGTTCCCCCTGAACCATCAAGCTTAAGGCGCTATTCAAGGAAGAATGGTGTTACTGAAAAGCAAGGTGCCCATGTCTCCATGACACCATCACACCATAACACACGTAAAGAAGTGGTTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAAGTAAAACTTTCTCTGAGCTGCAGCTCAGCTCTCCAGGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCATCGACCCAAATTTTTCTGTCGGAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAACGATAACTCACAAGAAGGTTCAATGTCAAAATCAAGCATAGATGTGTCAAAGGAATCAGAGGTTGATGGCACACCCGCCATTGGGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCACCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCGAGATGAACAGAACAATTGATATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACTCAGTTTAGTAGTTGTTCCACATCACCAGTCTACAGAAGATCGTATAAGGTCTTATCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCATCTACTAACGACTTTCCACCACCTTTCAACTACATACCCCAAAACCTTGTGTTCCGAGATGCTTCTGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCATCTTGTTGTCAGACACACATTGTGCCTGTACATATAAAACTGGGGGCAAATTTGCATATACAGCTCAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGTATTGCTATCAGTCACAACCCTCAACAGCATTGCTTTTACTGCAAAGATTGTCCACTTGAAAGGTCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGAAATCGCGTTATCCAGCGTGGAATAACATACAACTTGCAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCTGTTCTACTGGATGCGGCTTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAGATTGAGTGTCCAGATCATTACTACTATCATTTCGCCCTTTTTACCACCAGAAACATAGCAGCGCATGAAGAGCTCACTTGGGATTATGGCATTGACTTTGACGACCATGATCAACCTGTCAAACTGTTTCAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACAGATCCACTAGGTCTGCGTTAATTTCTGGATGA

Protein sequence

>Msa0122990

MAPRPNPKIAAALQAMTEFGIPEAKVKRALKKLLKLFDKNWQLIEEENYRALLDAIFEEGDDFEEPEPQKKNKRVNEEEMEAEEAPLNVESARPLKRLRLRGQENNSPSSASSPLKKSHIEKDTALEGGSSQQPRNNAVSSDVNGRVAARPMRDASYDRGKQPASPHASYELTVPKSEPVDEEDYERRPLAMVPPEPSSLRRYSRKNGVTEKQGAHVSMTPSHHNTRKEVVSDVVIASSAQGEVKLSLSCSSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVGKMLRDICDCMLEFSTDSNDNSQEGSMSKSSIDVSKESEVDGTPAIGGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSEMNRTIDIPQSDVRMQPEDPVSPNSLSLVVVPHHQSTEDRIRSYHDVSDLTKGEENNQISWVNESSTNDFPPPFNYIPQNLVFRDASVNISLSRIGAEDSCSCIGSCILLSDTHCACTYKTGGKFAYTAQGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDAAWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQIECPDHYYYHFALFTTRNIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALISG*