AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123440 MtrunA17_Chr1g0184011 89.862 217 22 0 118 334 6 222 5.60e-144 405
Msa0123440 MtrunA17_Chr1g0184011 80.882 136 11 2 1 121 87 222 1.05e-70 219
Msa0123440 MtrunA17_Chr1g0184031 91.549 213 17 1 124 336 12 223 4.08e-140 395
Msa0123440 MtrunA17_Chr1g0184031 85.294 136 6 1 1 122 87 222 4.81e-77 235
Msa0123440 MtrunA17_Chr1g0183981 77.778 216 33 5 124 334 8 213 5.10e-112 324
Msa0123440 MtrunA17_Chr1g0183981 83.824 136 7 2 1 121 78 213 6.10e-74 227
Msa0123440 MtrunA17_Chr1g0184061 75.701 214 44 6 124 333 8 217 5.29e-103 301
Msa0123440 MtrunA17_Chr1g0184061 73.913 138 18 3 1 120 80 217 5.54e-59 189
Msa0123440 MtrunA17_Chr1g0184071 65.537 177 39 5 118 290 5 163 6.77e-69 213
Msa0123440 MtrunA17_Chr1g0184071 81.319 91 3 1 1 77 72 162 1.21e-45 153
Msa0123440 MtrunA17_Chr1g0184041 91.667 84 7 0 243 326 1 84 3.58e-47 157
Msa0123440 MtrunA17_Chr1g0184041 88.571 70 7 1 45 113 15 84 2.05e-34 124
Msa0123440 MtrunA17_Chr4g0026881 41.315 213 90 6 146 327 30 238 2.09e-42 147
Msa0123440 MtrunA17_Chr4g0026881 43.885 139 53 4 1 114 100 238 4.24e-30 114
Msa0123440 MtrunA17_Chr1g0186741 47.486 179 81 3 162 328 29 206 4.87e-41 142
Msa0123440 MtrunA17_Chr1g0186741 53.435 131 45 2 1 115 76 206 1.35e-28 110
Msa0123440 MtrunA17_Chr4g0026931 49.306 144 59 4 198 327 133 276 5.73e-39 139
Msa0123440 MtrunA17_Chr4g0026931 41.259 143 55 3 1 114 134 276 8.89e-29 112
Msa0123440 MtrunA17_Chr1g0183931 51.205 166 69 3 177 330 78 243 2.02e-38 137
Msa0123440 MtrunA17_Chr1g0183931 42.958 142 54 4 1 117 104 243 2.95e-25 102
Msa0123440 MtrunA17_Chr1g0167781 47.872 188 71 5 162 331 38 216 2.18e-37 133
Msa0123440 MtrunA17_Chr1g0167781 48.252 143 48 4 1 127 85 217 9.66e-23 94.4
Msa0123440 MtrunA17_Chr7g0261171 51.220 164 69 3 168 324 57 216 2.76e-36 130
Msa0123440 MtrunA17_Chr7g0261171 52.985 134 35 5 1 111 88 216 1.28e-23 97.4
Msa0123440 MtrunA17_Chr7g0261201 51.678 149 62 3 189 327 91 239 3.13e-35 128
Msa0123440 MtrunA17_Chr7g0261201 48.201 139 47 5 1 114 101 239 3.61e-23 96.3
Msa0123440 MtrunA17_Chr2g0283171 59.494 79 32 0 188 266 55 133 1.58e-28 108
Msa0123440 MtrunA17_Chr2g0283171 72.917 48 13 0 1 48 66 113 1.60e-19 84.0
Msa0123440 MtrunA17_Chr4g0046161 46.847 111 48 2 153 252 3 113 3.97e-28 105
Msa0123440 MtrunA17_Chr4g0046161 69.565 46 14 0 1 46 60 105 1.78e-18 80.1
Msa0123440 MtrunA17_Chr2g0283181 32.028 281 141 11 81 325 23 289 1.96e-26 106
Msa0123440 MtrunA17_Chr2g0283181 37.410 139 59 4 1 112 152 289 8.10e-18 82.4
Msa0123440 MtrunA17_Chr1g0170531 49.057 106 45 2 163 268 65 161 2.82e-25 101
Msa0123440 MtrunA17_Chr1g0170531 72.917 48 13 0 1 48 92 139 1.03e-16 78.2
Msa0123440 MtrunA17_Chr8g0335311 73.684 57 15 0 196 252 96 152 3.18e-24 98.2
Msa0123440 MtrunA17_Chr8g0335311 68.519 54 17 0 1 54 99 152 6.02e-20 86.3
Msa0123440 MtrunA17_Chr4g0055761 48.148 108 48 3 156 255 97 204 5.69e-24 99.0
Msa0123440 MtrunA17_Chr4g0055761 63.333 60 22 0 1 60 148 207 4.69e-19 85.5
Msa0123440 MtrunA17_Chr7g0261101 60.000 75 29 1 179 253 4 77 6.50e-24 95.5
Msa0123440 MtrunA17_Chr7g0261101 56.338 71 19 1 1 71 23 81 6.17e-18 79.3
Msa0123440 MtrunA17_Chr7g0221501 52.874 87 38 2 172 258 29 112 1.13e-23 95.9
Msa0123440 MtrunA17_Chr7g0221501 59.649 57 22 1 1 57 54 109 9.73e-17 77.0
Msa0123440 MtrunA17_Chr7g0261151 63.077 65 24 0 188 252 12 76 1.19e-23 94.7
Msa0123440 MtrunA17_Chr7g0261151 56.338 71 19 1 1 71 23 81 1.49e-18 80.9
Msa0123440 MtrunA17_Chr1g0186731 67.241 58 19 0 196 253 21 78 3.15e-23 93.6
Msa0123440 MtrunA17_Chr1g0186731 67.347 49 16 0 1 49 24 72 1.30e-17 78.6
Msa0123440 MtrunA17_Chr4g0055781 55.405 74 33 0 182 255 88 161 4.41e-23 96.3
Msa0123440 MtrunA17_Chr4g0055781 68.750 48 15 0 1 48 105 152 1.71e-15 75.1
Msa0123440 MtrunA17_Chr8g0335331 60.870 69 27 0 184 252 113 181 7.00e-23 94.4
Msa0123440 MtrunA17_Chr8g0335331 62.963 54 20 0 1 54 128 181 5.31e-18 81.3
Msa0123440 MtrunA17_Chr1g0184081 71.930 57 16 0 196 252 21 77 9.52e-23 92.4
Msa0123440 MtrunA17_Chr1g0184081 73.469 49 13 0 1 49 24 72 2.54e-18 80.5
Msa0123440 MtrunA17_Chr1g0170471 45.082 122 63 2 137 255 22 142 9.62e-23 93.2
Msa0123440 MtrunA17_Chr1g0170471 76.190 42 10 0 5 46 90 131 1.74e-15 73.6
Msa0123440 MtrunA17_Chr1g0186671 70.175 57 17 0 196 252 19 75 1.09e-22 92.0
Msa0123440 MtrunA17_Chr1g0186671 64.815 54 19 0 1 54 22 75 9.33e-19 81.6
Msa0123440 MtrunA17_Chr7g0221471 52.874 87 38 2 172 258 29 112 1.56e-22 92.8
Msa0123440 MtrunA17_Chr7g0221471 57.895 57 23 1 1 57 54 109 7.98e-16 74.3
Msa0123440 MtrunA17_Chr1g0196871 71.667 60 17 0 196 255 16 75 1.93e-22 90.1
Msa0123440 MtrunA17_Chr1g0196871 51.948 77 34 1 1 74 19 95 1.75e-16 73.9
Msa0123440 MtrunA17_Chr7g0250721 49.541 109 42 4 147 252 19 117 2.26e-22 93.2
Msa0123440 MtrunA17_Chr7g0250721 58.333 60 25 0 1 60 64 123 8.83e-17 77.8
Msa0123440 MtrunA17_Chr4g0055801 62.500 64 24 0 192 255 150 213 5.68e-22 94.4
Msa0123440 MtrunA17_Chr4g0055801 70.833 48 14 0 1 48 157 204 1.22e-15 76.3
Msa0123440 MtrunA17_Chr7g0250731 68.421 57 18 0 196 252 61 117 1.98e-21 90.5
Msa0123440 MtrunA17_Chr7g0250731 53.623 69 32 0 1 69 64 132 3.79e-17 79.0
Msa0123440 MtrunA17_Chr7g0250711 64.912 57 20 0 196 252 60 116 2.28e-20 87.8
Msa0123440 MtrunA17_Chr7g0250711 67.391 46 15 0 1 46 63 108 6.42e-16 75.5
Msa0123440 MtrunA17_Chr8g0335321 50.602 83 30 1 196 267 96 178 3.16e-20 87.4
Msa0123440 MtrunA17_Chr8g0335321 53.333 60 28 0 1 60 99 158 5.09e-16 75.9
Msa0123440 MtrunA17_Chr1g0186681 65.574 61 20 1 196 255 19 79 3.48e-20 85.1
Msa0123440 MtrunA17_Chr1g0186681 61.818 55 20 1 1 54 22 76 3.87e-16 73.9
Msa0123440 MtrunA17_Chr2g0297331 59.091 66 27 0 187 252 5 70 5.57e-20 84.7
Msa0123440 MtrunA17_Chr2g0297331 55.556 54 24 0 1 54 17 70 6.49e-14 67.8
Msa0123440 MtrunA17_Chr4g0066931 60.938 64 24 1 189 252 46 108 1.56e-19 88.2
Msa0123440 MtrunA17_Chr4g0066931 67.391 46 14 1 1 46 56 100 3.86e-14 72.4
Msa0123440 MtrunA17_Chr1g0195151 41.667 120 62 2 134 253 22 133 2.35e-19 87.0
Msa0123440 MtrunA17_Chr1g0195151 65.217 46 15 1 1 46 80 124 3.11e-12 66.2
Msa0123440 MtrunA17_Chr8g0383591 62.319 69 23 2 186 252 133 200 4.83e-19 86.3
Msa0123440 MtrunA17_Chr8g0383591 57.407 54 22 1 1 54 148 200 3.37e-13 69.3
Msa0123440 MtrunA17_Chr4g0044871 60.000 70 25 2 196 265 96 162 6.86e-19 84.3
Msa0123440 MtrunA17_Chr4g0044871 43.590 78 36 2 1 78 99 168 6.10e-13 67.4
Msa0123440 MtrunA17_Chr4g0044881 46.667 105 47 3 192 296 110 205 8.49e-19 84.3
Msa0123440 MtrunA17_Chr4g0044881 67.391 46 14 1 1 46 117 161 3.01e-12 65.5
Msa0123440 MtrunA17_Chr2g0282621 57.746 71 29 1 191 261 10 79 1.36e-18 82.0
Msa0123440 MtrunA17_Chr2g0282621 69.565 46 13 1 1 46 18 62 1.35e-13 68.2
Msa0123440 MtrunA17_Chr4g0044901 62.319 69 23 2 196 264 96 161 1.82e-18 83.2
Msa0123440 MtrunA17_Chr4g0044901 34.646 127 56 3 1 127 99 198 2.75e-12 65.5
Msa0123440 MtrunA17_Chr8g0367911 62.500 64 23 1 196 259 44 106 2.24e-18 84.0
Msa0123440 MtrunA17_Chr8g0367911 68.750 48 14 1 1 48 47 93 4.19e-14 71.6
Msa0123440 MtrunA17_Chr5g0396911 61.290 62 23 1 196 257 112 172 2.44e-18 84.3
Msa0123440 MtrunA17_Chr5g0396911 67.391 46 14 1 1 46 115 159 1.34e-13 70.5
Msa0123440 MtrunA17_Chr1g0183961 68.966 58 18 0 196 253 27 84 3.90e-18 80.1
Msa0123440 MtrunA17_Chr1g0183961 73.913 46 12 0 1 46 30 75 1.06e-12 65.1
Msa0123440 MtrunA17_Chr2g0286161 56.250 64 27 1 189 252 43 105 8.15e-18 82.4
Msa0123440 MtrunA17_Chr2g0286161 60.417 48 18 1 1 48 53 99 1.34e-12 67.4
Msa0123440 MtrunA17_Chr3g0099871 55.714 70 30 1 186 255 17 85 9.81e-18 80.9
Msa0123440 MtrunA17_Chr3g0099871 69.565 46 13 1 1 46 30 74 5.54e-13 67.4
Msa0123440 MtrunA17_Chr2g0316931 64.407 59 20 1 196 254 31 88 1.03e-17 80.5
Msa0123440 MtrunA17_Chr2g0316931 57.143 56 23 1 1 56 34 88 5.31e-13 67.0
Msa0123440 MtrunA17_Chr8g0344961 54.217 83 30 2 177 252 98 179 1.04e-17 83.2
Msa0123440 MtrunA17_Chr8g0344961 55.556 54 23 1 1 54 127 179 1.14e-11 65.1
Msa0123440 MtrunA17_Chr7g0261181 56.944 72 31 0 193 264 10 81 1.12e-17 78.2
Msa0123440 MtrunA17_Chr7g0261181 71.739 46 13 0 1 46 16 61 2.63e-12 63.2
Msa0123440 MtrunA17_Chr5g0438801 51.948 77 35 2 178 254 34 108 1.16e-17 82.0
Msa0123440 MtrunA17_Chr5g0438801 68.750 48 14 1 1 48 54 100 6.91e-14 70.9
Msa0123440 MtrunA17_Chr7g0252381 66.667 57 18 1 196 252 42 97 1.18e-17 81.6
Msa0123440 MtrunA17_Chr7g0252381 56.250 64 24 2 1 61 45 107 9.71e-14 70.5
Msa0123440 MtrunA17_Chr5g0432821 51.316 76 35 2 192 267 120 193 1.43e-17 81.6
Msa0123440 MtrunA17_Chr5g0438831 43.617 94 45 2 168 254 11 103 1.69e-17 81.3
Msa0123440 MtrunA17_Chr5g0438831 61.111 54 20 1 1 54 49 101 4.81e-14 71.6
Msa0123440 MtrunA17_Chr4g0044911 60.294 68 24 2 196 263 96 160 1.97e-17 80.1
Msa0123440 MtrunA17_Chr4g0044911 57.407 54 22 1 1 54 99 151 2.19e-12 65.9
Msa0123440 MtrunA17_Chr3g0126321 54.545 66 29 1 196 261 113 177 2.25e-17 82.0
Msa0123440 MtrunA17_Chr3g0126321 63.043 46 16 1 1 46 116 160 4.61e-12 66.2
Msa0123440 MtrunA17_Chr2g0295421 60.000 65 25 1 189 253 89 152 2.35e-17 80.5
Msa0123440 MtrunA17_Chr2g0295421 65.217 46 15 1 1 46 99 143 2.06e-11 63.5
Msa0123440 MtrunA17_Chr2g0324131 66.667 57 18 1 196 252 218 273 3.35e-17 82.0
Msa0123440 MtrunA17_Chr2g0324131 65.217 46 15 1 1 46 221 265 8.98e-12 65.9
Msa0123440 MtrunA17_Chr1g0158971 62.712 59 19 2 196 253 115 171 7.08e-17 80.5
Msa0123440 MtrunA17_Chr2g0282651 54.545 77 33 2 178 253 51 126 7.40e-17 79.0
Msa0123440 MtrunA17_Chr2g0282651 67.391 46 14 1 1 46 73 117 1.94e-12 66.2
Msa0123440 MtrunA17_Chr2g0334031 52.632 76 35 1 177 252 98 172 9.34e-17 80.5
Msa0123440 MtrunA17_Chr2g0334031 55.556 54 23 1 1 54 120 172 1.08e-11 65.1
Msa0123440 MtrunA17_Chr5g0412641 48.958 96 39 3 161 252 12 101 1.04e-16 80.1
Msa0123440 MtrunA17_Chr5g0412641 67.391 46 14 1 1 46 49 93 1.26e-12 68.2
Msa0123440 MtrunA17_Chr4g0062551 52.778 72 32 2 181 252 39 108 2.01e-16 75.1
Msa0123440 MtrunA17_Chr8g0375031 57.812 64 26 1 189 252 118 180 3.19e-16 76.6
Msa0123440 MtrunA17_Chr8g0375031 56.364 55 23 1 1 55 128 181 1.31e-12 66.2
Msa0123440 MtrunA17_Chr6g0461271 37.589 141 61 6 163 303 3 116 5.45e-16 77.4
Msa0123440 MtrunA17_Chr6g0461271 40.625 96 50 2 1 96 36 124 3.75e-11 63.2
Msa0123440 MtrunA17_Chr8g0387801 59.649 57 22 1 196 252 107 162 6.60e-16 77.4
Msa0123440 MtrunA17_Chr8g0387801 32.164 171 97 6 1 159 110 273 8.37e-12 65.1
Msa0123440 MtrunA17_Chr1g0196781 61.404 57 21 1 196 252 152 207 7.85e-16 77.0
Msa0123440 MtrunA17_Chr1g0196781 53.704 54 24 1 1 54 155 207 7.09e-12 65.5
Msa0123440 MtrunA17_Chr8g0378811 54.688 64 28 1 190 253 49 111 8.25e-16 76.3
Msa0123440 MtrunA17_Chr4g0062161 52.778 72 32 2 181 252 39 108 8.48e-16 75.1
Msa0123440 MtrunA17_Chr3g0115631 61.404 57 21 1 196 252 150 205 1.29e-15 76.6
Msa0123440 MtrunA17_Chr3g0115631 51.852 54 25 1 1 54 153 205 3.53e-11 63.5
Msa0123440 MtrunA17_Chr4g0063751 51.429 70 33 1 190 259 1 69 1.89e-15 74.3
Msa0123440 MtrunA17_Chr1g0200931 45.783 83 41 3 183 262 8 89 2.37e-15 72.0
Msa0123440 MtrunA17_Chr4g0023411 56.452 62 26 1 191 252 60 120 2.43e-15 73.6
Msa0123440 MtrunA17_Chr4g0023411 53.704 54 24 1 1 54 68 120 4.92e-11 61.2
Msa0123440 MtrunA17_Chr7g0217991 48.684 76 36 2 179 252 23 97 2.60e-15 76.6
Msa0123440 MtrunA17_Chr8g0382491 50.725 69 33 1 196 264 113 180 3.09e-15 75.1
Msa0123440 MtrunA17_Chr5g0425561 61.404 57 21 1 196 252 173 228 3.12e-15 75.9
Msa0123440 MtrunA17_Chr5g0425561 50.000 58 28 1 1 58 176 232 2.89e-11 63.9
Msa0123440 MtrunA17_Chr6g0453661 41.584 101 44 3 196 295 38 124 3.96e-15 75.9
Msa0123440 MtrunA17_Chr6g0453661 40.404 99 56 3 1 97 41 138 7.19e-11 62.8
Msa0123440 MtrunA17_Chr5g0437671 53.521 71 32 1 193 263 82 151 7.74e-15 74.7
Msa0123440 MtrunA17_Chr2g0323171 54.839 62 27 1 191 252 60 120 7.99e-15 72.0
Msa0123440 MtrunA17_Chr7g0253424 50.000 66 32 1 187 252 30 94 2.00e-14 72.4
Msa0123440 MtrunA17_Chr2g0333011 50.769 65 31 1 190 254 1 64 3.11e-14 70.1
Msa0123440 MtrunA17_Chr8g0340311 50.000 62 30 1 192 253 43 103 3.35e-14 70.5
Msa0123440 MtrunA17_Chr4g0017851 46.429 84 42 2 194 275 116 198 3.47e-14 72.0
Msa0123440 MtrunA17_Chr8g0390091 43.011 93 47 3 166 253 2 93 4.08e-14 70.9
Msa0123440 MtrunA17_Chr2g0331231 44.928 69 37 1 184 252 29 96 4.22e-14 70.5
Msa0123440 MtrunA17_Chr5g0396171 48.611 72 34 2 194 263 22 92 5.74e-14 67.0
Msa0123440 MtrunA17_Chr4g0003421 52.308 65 30 1 190 254 34 97 9.46e-14 70.1
Msa0123440 MtrunA17_Chr2g0301191 50.000 70 34 1 183 252 6 74 1.30e-13 68.9
Msa0123440 MtrunA17_Chr8g0350701 52.542 59 27 1 196 254 27 84 1.59e-13 70.1
Msa0123440 MtrunA17_Chr8g0334801 43.902 82 39 3 182 261 42 118 1.67e-13 68.6
Msa0123440 MtrunA17_Chr7g0243431 53.125 64 24 1 195 252 77 140 1.87e-13 70.9
Msa0123440 MtrunA17_Chr1g0189941 52.542 59 27 1 195 253 23 80 3.04e-13 67.0
Msa0123440 MtrunA17_Chr4g0042761 53.333 60 27 1 193 252 45 103 3.61e-13 69.3
Msa0123440 MtrunA17_Chr7g0232261 46.667 75 36 2 178 252 46 116 3.87e-13 68.2
Msa0123440 MtrunA17_Chr3g0140161 51.724 58 27 1 196 253 43 99 1.01e-12 65.9
Msa0123440 MtrunA17_Chr6g0486701 52.632 57 26 1 196 252 44 99 1.12e-12 66.6
Msa0123440 MtrunA17_Chr2g0301171 54.237 59 26 1 194 252 17 74 1.16e-12 66.2
Msa0123440 MtrunA17_Chr8g0346741 51.724 58 27 1 196 253 39 95 1.80e-12 65.1
Msa0123440 MtrunA17_Chr1g0150661 38.750 80 46 2 173 252 14 90 2.22e-12 65.9
Msa0123440 MtrunA17_Chr3g0134161 44.118 68 37 1 185 252 34 100 2.38e-12 64.7
Msa0123440 MtrunA17_Chr7g0257911 52.632 57 26 1 196 252 31 86 3.30e-12 66.2
Msa0123440 MtrunA17_Chr5g0437371 53.226 62 28 1 191 252 61 121 3.51e-12 66.6
Msa0123440 MtrunA17_Chr3g0137174 54.386 57 25 1 196 252 8 63 4.09e-12 64.3
Msa0123440 MtrunA17_Chr5g0438841 55.000 60 26 1 196 255 16 74 4.32e-12 63.9
Msa0123440 MtrunA17_Chr7g0275841 50.000 58 28 1 196 253 28 84 6.62e-12 63.2
Msa0123440 MtrunA17_Chr7g0265851 52.632 57 26 1 196 252 24 79 7.79e-12 63.9
Msa0123440 MtrunA17_Chr1g0150631 35.043 117 58 3 185 285 28 142 8.51e-12 64.3
Msa0123440 MtrunA17_Chr2g0301181 52.542 59 27 1 194 252 17 74 1.39e-11 63.5
Msa0123440 MtrunA17_Chr1g0150691 46.970 66 29 2 187 252 18 77 1.43e-11 63.2
Msa0123440 MtrunA17_Chr4g0055951 50.000 58 28 1 195 252 73 129 1.60e-11 63.9
Msa0123440 MtrunA17_Chr4g0002631 54.386 57 25 1 196 252 8 63 1.67e-11 62.8
Msa0123440 MtrunA17_Chr5g0399441 43.478 69 38 1 185 253 17 84 2.22e-11 62.0
Msa0123440 MtrunA17_Chr3g0136551 47.059 68 33 2 185 252 56 120 2.65e-11 63.2
Msa0123440 MtrunA17_Chr1g0150671 49.123 57 28 1 196 252 46 101 2.99e-11 63.2
Msa0123440 MtrunA17_Chr3g0129421 62.903 62 22 1 191 252 165 225 3.05e-11 63.9
Msa0123440 MtrunA17_Chr1g0153151 49.123 57 28 1 196 252 44 99 3.79e-11 61.2
Msa0123440 MtrunA17_Chr1g0203861 50.000 58 28 1 196 253 44 100 3.94e-11 61.6
Msa0123440 MtrunA17_Chr5g0401871 45.312 64 34 1 190 253 19 81 5.45e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123440 AT3G23240.1 57.746 142 51 2 195 332 81 217 5.91e-50 166
Msa0123440 AT3G23240.1 52.632 133 49 1 1 119 85 217 3.80e-37 133
Msa0123440 AT2G31230.1 46.012 163 63 3 190 327 80 242 6.48e-38 135
Msa0123440 AT2G31230.1 42.949 156 45 5 1 114 89 242 3.64e-26 104
Msa0123440 AT1G06160.1 43.750 160 60 2 195 324 81 240 4.88e-28 109
Msa0123440 AT1G06160.1 38.608 158 48 3 1 111 85 240 8.30e-18 82.0
Msa0123440 AT5G47220.1 46.154 117 60 2 141 255 61 176 7.10e-26 103
Msa0123440 AT5G47220.1 65.000 60 21 0 1 60 120 179 5.57e-19 85.1
Msa0123440 AT5G43410.1 70.492 61 18 0 192 252 11 71 7.03e-25 98.2
Msa0123440 AT5G43410.1 76.087 46 11 0 1 46 18 63 1.04e-18 81.6
Msa0123440 AT5G51190.1 46.364 110 55 2 146 255 26 131 5.45e-24 98.2
Msa0123440 AT5G51190.1 55.932 59 26 0 1 59 75 133 7.66e-16 75.9
Msa0123440 AT4G17500.1 70.000 60 18 0 196 255 148 207 1.02e-23 98.6
Msa0123440 AT4G17500.1 65.000 60 21 0 1 60 151 210 3.17e-19 86.3
Msa0123440 AT3G23230.1 61.905 63 24 0 191 253 15 77 2.03e-23 94.4
Msa0123440 AT3G23230.1 62.963 54 20 0 1 54 23 76 8.03e-18 79.3
Msa0123440 AT5G47230.1 61.538 65 25 0 191 255 151 215 1.47e-22 96.3
Msa0123440 AT5G47230.1 59.322 59 24 0 1 59 159 217 4.87e-16 77.8
Msa0123440 AT4G17490.1 61.538 65 25 0 191 255 132 196 8.54e-22 94.0
Msa0123440 AT4G17490.1 70.833 48 14 0 1 48 140 187 2.45e-15 75.5
Msa0123440 AT2G44840.1 66.667 57 19 0 196 252 92 148 1.54e-21 91.7
Msa0123440 AT2G44840.1 58.333 60 25 0 1 60 95 154 9.55e-18 81.3
Msa0123440 AT5G61600.1 64.407 59 21 0 196 254 88 146 1.86e-21 92.0
Msa0123440 AT5G61600.1 54.237 59 25 1 1 57 91 149 4.93e-15 73.9
Msa0123440 AT2G33710.2 61.429 70 25 2 183 252 58 125 2.36e-21 91.3
Msa0123440 AT2G33710.2 71.739 46 12 1 1 46 73 117 1.36e-15 75.5
Msa0123440 AT2G33710.1 61.429 70 25 2 183 252 58 125 2.42e-21 91.3
Msa0123440 AT2G33710.1 71.739 46 12 1 1 46 73 117 1.12e-15 75.5
Msa0123440 AT2G47520.1 49.495 99 46 2 164 259 15 112 3.47e-21 89.4
Msa0123440 AT2G47520.1 63.043 46 16 1 1 46 53 97 1.64e-12 65.5
Msa0123440 AT4G18450.1 58.108 74 27 2 196 268 110 180 4.05e-21 92.4
Msa0123440 AT4G18450.1 76.087 46 11 0 1 46 113 158 1.58e-17 82.0
Msa0123440 AT5G07580.1 66.102 59 20 0 196 254 110 168 5.85e-21 89.7
Msa0123440 AT5G07580.1 52.113 71 32 1 1 69 113 183 1.85e-15 74.7
Msa0123440 AT4G27950.1 58.824 68 27 1 196 263 118 184 2.80e-20 90.5
Msa0123440 AT4G27950.1 63.043 46 16 1 1 46 121 165 1.80e-12 67.8
Msa0123440 AT3G16770.1 43.925 107 50 3 146 252 38 134 5.21e-20 88.2
Msa0123440 AT3G16770.1 69.565 46 13 1 1 46 82 126 1.56e-13 69.7
Msa0123440 AT4G11140.1 55.405 74 32 1 196 269 87 159 5.57e-20 89.0
Msa0123440 AT4G11140.1 43.000 100 48 3 1 100 90 180 1.40e-13 70.5
Msa0123440 AT5G13910.1 68.421 57 17 1 196 252 20 75 3.18e-19 85.1
Msa0123440 AT5G13910.1 71.739 46 12 1 1 46 23 67 1.85e-14 71.6
Msa0123440 AT5G13330.1 56.338 71 28 2 185 253 26 95 4.75e-19 84.7
Msa0123440 AT5G13330.1 54.386 57 25 1 1 57 42 97 1.11e-13 69.7
Msa0123440 AT5G18560.1 60.000 65 25 1 188 252 47 110 5.77e-19 87.0
Msa0123440 AT5G18560.1 69.565 46 13 1 1 46 58 102 2.42e-14 73.6
Msa0123440 AT3G23220.1 77.193 57 13 0 196 252 14 70 1.72e-18 81.3
Msa0123440 AT3G23220.1 78.261 46 10 0 1 46 17 62 1.07e-12 65.1
Msa0123440 AT3G20310.1 55.263 76 32 2 192 266 23 97 4.27e-18 82.8
Msa0123440 AT3G20310.1 55.556 72 28 3 1 70 30 99 3.62e-14 71.6
Msa0123440 AT1G28160.1 66.667 57 18 1 196 252 39 94 5.30e-18 82.4
Msa0123440 AT1G28160.1 67.391 46 14 1 1 46 42 86 4.63e-13 68.6
Msa0123440 AT5G61890.1 60.656 61 23 1 192 252 86 145 6.92e-18 82.4
Msa0123440 AT5G61890.1 56.140 57 24 1 1 57 93 148 1.49e-13 70.1
Msa0123440 AT1G04370.1 70.492 61 18 0 192 252 16 76 9.65e-18 79.0
Msa0123440 AT1G04370.1 76.087 46 11 0 1 46 23 68 9.97e-12 62.4
Msa0123440 AT1G22190.1 55.714 70 30 1 196 265 83 151 1.15e-17 82.0
Msa0123440 AT1G22190.1 53.704 54 24 1 1 54 86 138 8.60e-12 65.1
Msa0123440 AT5G44210.1 58.209 67 27 1 188 254 25 90 1.19e-17 80.5
Msa0123440 AT5G44210.1 59.259 54 21 1 1 54 36 88 1.54e-12 66.2
Msa0123440 AT5G53290.1 57.143 63 26 1 192 254 121 182 1.69e-17 82.8
Msa0123440 AT5G53290.1 63.043 46 16 1 1 46 128 172 3.29e-12 67.0
Msa0123440 AT1G36060.1 60.317 63 24 1 196 258 143 204 2.86e-17 81.6
Msa0123440 AT1G36060.1 51.515 66 28 2 1 63 146 210 3.74e-12 66.6
Msa0123440 AT1G28360.1 59.091 66 26 1 187 252 3 67 3.33e-17 79.0
Msa0123440 AT1G28360.1 67.391 46 14 1 1 46 15 59 5.91e-13 67.0
Msa0123440 AT1G12890.1 39.496 119 63 3 192 304 17 132 3.51e-17 79.7
Msa0123440 AT1G12890.1 47.945 73 32 2 1 73 24 90 7.92e-12 64.3
Msa0123440 AT1G72360.1 59.375 64 25 1 189 252 18 80 3.84e-17 79.3
Msa0123440 AT1G72360.1 51.852 54 25 1 1 54 28 80 2.60e-11 62.8
Msa0123440 AT1G72360.3 49.425 87 39 2 166 252 48 129 4.89e-17 80.1
Msa0123440 AT3G15210.1 64.407 59 20 1 196 254 25 82 4.90e-17 79.3
Msa0123440 AT3G15210.1 67.391 46 14 1 1 46 28 72 1.87e-12 66.2
Msa0123440 AT1G50640.1 52.113 71 33 1 196 266 28 97 5.17e-17 79.3
Msa0123440 AT1G50640.1 71.739 46 12 1 1 46 31 75 2.83e-13 68.6
Msa0123440 AT4G23750.2 48.101 79 40 1 176 254 102 179 6.45e-17 80.9
Msa0123440 AT4G23750.1 48.101 79 40 1 176 254 102 179 6.45e-17 80.9
Msa0123440 AT1G72360.2 48.276 87 42 2 166 252 48 131 6.56e-17 79.7
Msa0123440 AT2G22200.1 61.667 60 22 1 193 252 68 126 9.11e-17 79.3
Msa0123440 AT2G22200.1 53.704 54 24 1 1 54 74 126 4.65e-12 65.9
Msa0123440 AT3G61630.1 50.000 70 34 1 196 265 105 173 1.31e-16 79.7
Msa0123440 AT3G61630.1 46.269 67 35 1 1 67 108 173 1.85e-12 67.4
Msa0123440 AT1G03800.1 57.627 59 24 1 196 254 53 110 1.34e-16 78.6
Msa0123440 AT1G03800.1 58.333 48 19 1 1 48 56 102 9.11e-12 64.7
Msa0123440 AT4G28140.1 59.091 66 25 2 196 260 143 207 1.38e-16 79.3
Msa0123440 AT4G28140.1 60.870 46 17 1 1 46 146 190 9.26e-11 62.4
Msa0123440 AT1G28370.1 58.065 62 25 1 196 257 20 80 1.69e-16 76.3
Msa0123440 AT1G28370.1 53.571 56 25 1 1 56 23 77 2.09e-13 67.8
Msa0123440 AT1G28370.2 58.065 62 25 1 196 257 58 118 1.85e-16 77.4
Msa0123440 AT1G28370.2 53.571 56 25 1 1 56 61 115 2.58e-13 68.6
Msa0123440 AT1G24590.1 66.667 57 18 1 196 252 58 113 2.25e-16 79.0
Msa0123440 AT1G24590.1 67.391 46 14 1 1 46 61 105 1.55e-12 67.8
Msa0123440 AT1G78080.1 47.253 91 44 3 168 256 123 211 2.36e-16 79.3
Msa0123440 AT1G78080.1 53.704 54 24 1 1 54 155 207 1.52e-11 65.1
Msa0123440 AT1G22985.1 55.882 68 27 2 187 252 67 133 4.47e-16 75.1
Msa0123440 AT1G22985.1 63.830 47 15 1 1 45 78 124 6.31e-12 63.5
Msa0123440 AT5G65130.1 60.345 58 22 1 196 253 111 167 6.24e-16 77.4
Msa0123440 AT5G65130.2 60.345 58 22 1 196 253 113 169 6.28e-16 77.4
Msa0123440 AT1G12980.1 63.793 58 20 1 196 253 57 113 6.33e-16 77.8
Msa0123440 AT1G12980.1 65.217 46 15 1 1 46 60 104 1.39e-11 65.1
Msa0123440 AT4G13620.1 52.000 75 32 2 178 252 217 287 8.86e-16 78.2
Msa0123440 AT2G46310.1 59.649 57 22 1 196 252 99 154 9.38e-16 77.0
Msa0123440 AT2G46310.1 60.870 46 17 1 1 46 102 146 3.05e-11 63.9
Msa0123440 AT4G31060.1 42.157 102 48 4 163 263 1 92 1.24e-15 74.7
Msa0123440 AT2G20880.1 61.404 57 21 1 196 252 187 242 2.16e-15 76.3
Msa0123440 AT5G61590.1 55.714 70 31 0 185 254 96 165 2.59e-15 73.9
Msa0123440 AT5G19790.1 55.738 61 26 1 193 253 19 78 3.57e-15 74.7
Msa0123440 AT1G75490.1 41.026 117 52 5 167 275 5 112 4.13e-15 73.6
Msa0123440 AT4G39780.1 53.731 67 30 1 190 256 87 152 5.11e-15 74.7
Msa0123440 AT5G64750.1 58.462 65 24 2 203 265 192 255 7.15e-15 75.5
Msa0123440 AT1G01250.1 42.268 97 50 3 159 253 9 101 1.33e-14 71.6
Msa0123440 AT1G15360.1 52.308 65 30 1 190 254 1 64 2.40e-14 71.2
Msa0123440 AT1G15360.2 52.308 65 30 1 190 254 1 64 2.40e-14 71.2
Msa0123440 AT1G71130.1 53.968 63 25 2 196 254 79 141 3.31e-14 70.1
Msa0123440 AT5G21960.1 53.125 64 29 1 190 253 1 63 4.58e-14 70.9
Msa0123440 AT5G50080.2 50.962 104 33 4 149 252 56 141 4.86e-14 70.9
Msa0123440 AT5G50080.1 50.962 104 33 4 149 252 47 132 5.33e-14 70.9
Msa0123440 AT5G25390.2 53.846 65 29 1 190 254 1 64 7.50e-14 69.7
Msa0123440 AT4G32800.1 48.684 76 34 2 177 252 4 74 9.52e-14 70.1
Msa0123440 AT5G25810.1 46.512 86 37 2 175 252 7 91 1.02e-13 69.7
Msa0123440 AT5G05410.2 56.667 60 25 1 193 252 76 134 1.09e-13 71.2
Msa0123440 AT1G71450.1 55.000 60 26 1 193 252 21 79 1.33e-13 68.9
Msa0123440 AT5G05410.1 56.667 60 25 1 193 252 76 134 1.86e-13 70.9
Msa0123440 AT2G40350.1 52.542 59 27 1 196 254 67 124 2.52e-13 67.4
Msa0123440 AT2G40350.2 52.542 59 27 1 196 254 74 131 2.80e-13 67.4
Msa0123440 AT1G19210.1 51.667 60 28 1 193 252 9 67 3.75e-13 67.4
Msa0123440 AT1G74930.1 48.529 68 32 2 185 252 12 76 4.82e-13 67.4
Msa0123440 AT3G16280.1 52.459 61 28 1 192 252 57 116 5.42e-13 68.2
Msa0123440 AT3G16280.2 52.459 61 28 1 192 252 75 134 5.49e-13 68.6
Msa0123440 AT3G11020.1 57.627 59 24 1 194 252 76 133 5.56e-13 69.3
Msa0123440 AT3G57600.1 51.613 62 28 2 196 256 28 88 5.82e-13 68.6
Msa0123440 AT3G50260.1 45.455 66 35 1 188 253 13 77 5.89e-13 66.2
Msa0123440 AT2G25820.1 54.386 57 25 1 196 252 26 81 1.10e-12 67.0
Msa0123440 AT3G60490.1 52.542 59 27 1 194 252 69 126 1.17e-12 67.4
Msa0123440 AT2G44940.1 50.000 62 30 1 191 252 95 155 1.28e-12 67.8
Msa0123440 AT2G40340.2 57.895 57 23 1 196 252 14 69 1.29e-12 67.8
Msa0123440 AT2G40340.5 57.895 57 23 1 196 252 14 69 1.29e-12 67.8
Msa0123440 AT2G40340.4 57.895 57 23 1 196 252 14 69 1.29e-12 67.8
Msa0123440 AT5G18450.1 50.847 59 28 1 194 252 32 89 1.46e-12 67.8
Msa0123440 AT2G40340.1 57.895 57 23 1 196 252 72 127 1.70e-12 67.8
Msa0123440 AT2G40340.3 57.895 57 23 1 196 252 72 127 1.87e-12 67.4
Msa0123440 AT2G40340.6 57.895 57 23 1 196 252 79 134 1.94e-12 67.8
Msa0123440 AT5G11590.1 54.386 57 25 1 196 252 51 106 2.77e-12 66.2
Msa0123440 AT5G25390.1 50.769 65 28 1 190 254 1 61 3.20e-12 65.1
Msa0123440 AT4G06746.1 50.000 58 28 1 196 253 36 92 3.28e-12 63.9
Msa0123440 AT1G43160.1 40.909 110 62 3 168 277 35 141 6.36e-12 64.3
Msa0123440 AT4G34410.1 68.421 57 17 1 196 252 136 191 8.41e-12 65.1
Msa0123440 AT4G36900.1 50.877 57 27 1 196 252 30 85 1.03e-11 63.5
Msa0123440 AT4G16750.1 40.206 97 42 3 172 253 1 96 1.56e-11 62.8
Msa0123440 AT5G07310.1 62.295 61 22 1 192 252 88 147 1.56e-11 64.3
Msa0123440 AT2G35700.1 47.541 61 31 1 192 252 41 100 1.65e-11 63.2
Msa0123440 AT1G46768.3 45.902 61 32 1 193 253 28 87 1.96e-11 61.6
Msa0123440 AT1G46768.1 45.902 61 32 1 193 253 28 87 2.01e-11 62.0
Msa0123440 AT1G46768.2 45.902 61 32 1 193 253 28 87 2.01e-11 62.0
Msa0123440 AT5G67190.1 50.877 57 27 1 196 252 21 76 2.47e-11 62.4
Msa0123440 AT2G23340.1 50.877 57 27 1 196 252 28 83 3.44e-11 61.6
Msa0123440 AT1G53170.1 64.407 59 20 1 196 254 31 88 3.69e-11 62.0
Msa0123440 AT4G25470.1 40.000 95 47 4 196 284 51 141 9.06e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAAAGTTGTTATTAAA+AGG 0.199242 1_3:-50560971 Msa0123440:CDS
TTTGGCTCGTCTTCGGTAAT+TGG 0.221863 1_3:+50552991 None:intergenic
CTTGCAGCATTTCTATATCT+TGG 0.270164 1_3:+50553103 None:intergenic
GACTCCAACATCAATTGTTT+TGG 0.284110 1_3:+50552973 None:intergenic
GAAATTTCCTTTGAATCATT+TGG 0.301807 1_3:-50553072 Msa0123440:CDS
ATTCAATATGATTGCAGAAA+AGG 0.360577 1_3:-50561034 Msa0123440:CDS
ATCAGAAGGATCAAGTGTTT+TGG 0.390577 1_3:-50552566 Msa0123440:CDS
ATCAGAGGGATCAAGTGTTT+TGG 0.398912 1_3:-50560918 Msa0123440:CDS
TAGTGCTGAAGATGCTGCTT+TGG 0.408553 1_3:-50552794 Msa0123440:CDS
GGAGGAAGAAGGGTTTGGTT+AGG 0.417111 1_3:-50561175 Msa0123440:CDS
GATCAAAAGTCATCATATAT+AGG 0.429788 1_3:-50552904 Msa0123440:CDS
AAAGGTGTAAAGAATAAAGC+AGG 0.437055 1_3:-50560953 Msa0123440:CDS
TTCAATATGATTGCAGAAAA+GGG 0.462338 1_3:-50561033 Msa0123440:CDS
GGTGTAAACAATAATAAAGC+AGG 0.463482 1_3:-50552601 Msa0123440:CDS
CAAGAGGAGGAAGAAGGGTT+TGG 0.464860 1_3:-50561180 Msa0123440:CDS
AGGTGTGAGGAAAAGACCTT+GGG 0.468743 1_3:-50561233 None:intergenic
ATTCAATATGATTGCAGAGA+AGG 0.479546 1_3:-50552685 Msa0123440:CDS
CTCTCCTTGAGTGCAAGTGC+AGG 0.481899 1_3:+50552655 None:intergenic
CAAGAGGAGGAAGAAGGGTT+TGG 0.486954 1_3:-50552831 Msa0123440:CDS
CAAAGAAAGATGTCATCAAA+AGG 0.492779 1_3:-50552622 Msa0123440:CDS
TTCACCTGCACTTGCACTCA+AGG 0.497952 1_3:-50552659 Msa0123440:CDS
CACAACAAGAGGAGGAAGAA+GGG 0.509329 1_3:-50552836 Msa0123440:CDS
CACAACAAGAGGAGGAAGAA+GGG 0.509329 1_3:-50561185 Msa0123440:CDS
ACACAACAAGAGGAGGAAGA+AGG 0.516868 1_3:-50552837 Msa0123440:CDS
ACACAACAAGAGGAGGAAGA+AGG 0.516868 1_3:-50561186 Msa0123440:CDS
ATTGCAGAATAATACTAAGA+TGG 0.517652 1_3:-50552926 Msa0123440:CDS
ATTAATACCAAATGATTCAA+AGG 0.536862 1_3:+50553065 None:intergenic
TTCAATATGATTGCAGAGAA+GGG 0.552987 1_3:-50552684 Msa0123440:CDS
GATTCAAAGGAAATTTCTGA+AGG 0.553216 1_3:+50553078 None:intergenic
CGAGCCAAAACAATTGATGT+TGG 0.560559 1_3:-50552977 Msa0123440:CDS
TAGGTGTGAGGAAAAGACCT+TGG 0.564548 1_3:-50561234 None:intergenic
TGAGAAATCGATCATATCAA+AGG 0.565420 1_3:+50553029 None:intergenic
GGAGGAAGAAGGGTTTGGCT+AGG 0.578788 1_3:-50552826 Msa0123440:CDS
ATCAGAGACACAACAAGAGG+AGG 0.603140 1_3:-50561193 Msa0123440:CDS
AATCAAAGTACTAGCAGCAA+CGG 0.604260 1_3:-50560842 Msa0123440:CDS
ATTCAAAGGAAATTTCTGAA+GGG 0.605187 1_3:+50553079 None:intergenic
GGGAAACAAGATCAATCAGA+AGG 0.616003 1_3:-50552580 Msa0123440:CDS
ATCAGAGACACAACAAGAGG+AGG 0.623407 1_3:-50552844 Msa0123440:CDS
GTGTAAACAATAATAAAGCA+GGG 0.631868 1_3:-50552600 Msa0123440:CDS
AAGGTGTAAAGAATAAAGCA+GGG 0.638132 1_3:-50560952 Msa0123440:CDS
GGGAAACAAGATCAATCAGA+GGG 0.639790 1_3:-50560932 Msa0123440:CDS
CTGCACTTGCACTAAAAGAG+AGG 0.642926 1_3:-50561003 Msa0123440:CDS
TCAGCTGCATACTTTCCCCA+AGG 0.649835 1_3:+50552868 None:intergenic
AGGGAAACAAGATCAATCAG+AGG 0.654836 1_3:-50560933 Msa0123440:CDS
GAGATCAGAGACACAACAAG+AGG 0.656508 1_3:-50561196 Msa0123440:CDS
GAGATCAGAGACACAACAAG+AGG 0.662555 1_3:-50552847 Msa0123440:CDS
CAAGATATAGAAATGCTGCA+AGG 0.686289 1_3:-50553102 Msa0123440:CDS
GTGTGAGGAAAAGACCTTGG+GGG 0.735494 1_3:-50561231 Msa0123440:CDS
GGTGTGAGGAAAAGACCTTG+GGG 0.758665 1_3:-50561232 Msa0123440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAAAAAATTT+GGG + chr1_3:50554895-50554914 None:intergenic 0.0%
!!! ATTTTTTTTTTTAAAAAATT+TGG + chr1_3:50554896-50554915 None:intergenic 0.0%
!! ATTTAAGTAAAATAACTTTA+TGG - chr1_3:50554747-50554766 Msa0123440:intron 10.0%
!!! CAAAAAATTGTATTTTTTTT+AGG - chr1_3:50555396-50555415 Msa0123440:intron 10.0%
!!! AAAAATTGTATTTTTTTTAG+GGG - chr1_3:50555398-50555417 Msa0123440:intron 10.0%
!!! TTAAAAGTATAAAATAAATC+TGG + chr1_3:50557269-50557288 None:intergenic 10.0%
!! AAAACAAATCAATAATTTAT+GGG + chr1_3:50558013-50558032 None:intergenic 10.0%
!! AATATTATACTAAATATGTA+GGG - chr1_3:50558103-50558122 Msa0123440:intron 10.0%
!!! TTCTAACTTATTTATTTTAA+TGG - chr1_3:50558147-50558166 Msa0123440:intron 10.0%
!! AGAAAAAGAAATTTAAAAAA+GGG - chr1_3:50558642-50558661 Msa0123440:intron 10.0%
!!! ATTTTATTTATAATAGTGAT+CGG - chr1_3:50559451-50559470 Msa0123440:intron 10.0%
!!! GTATTTGTTTAATTTAAAAA+GGG + chr1_3:50559720-50559739 None:intergenic 10.0%
!! TAACTTCAATAATATATATT+AGG - chr1_3:50560054-50560073 Msa0123440:intron 10.0%
!! AACTTCAATAATATATATTA+GGG - chr1_3:50560055-50560074 Msa0123440:intron 10.0%
!!! AATATGCTTAAATTTTTTTT+AGG + chr1_3:50560300-50560319 None:intergenic 10.0%
!!! ATTTTCATTGTTTCTAAAAA+TGG + chr1_3:50553756-50553775 None:intergenic 15.0%
!!! GACTAAACATTTTTTTTTTA+GGG + chr1_3:50554379-50554398 None:intergenic 15.0%
!! GAAGAAAATTTCTTTAAATA+TGG + chr1_3:50555528-50555547 None:intergenic 15.0%
!! ATAGTTATGTTTATAGTATA+AGG - chr1_3:50555724-50555743 Msa0123440:intron 15.0%
!!! AGTATTGATTATTATACTAT+GGG + chr1_3:50555921-50555940 None:intergenic 15.0%
!!! TAGTATTGATTATTATACTA+TGG + chr1_3:50555922-50555941 None:intergenic 15.0%
!! ACAAAGATTCAAAAATAAAA+TGG - chr1_3:50556653-50556672 Msa0123440:intron 15.0%
!! AAAAAAATAATAGTTGTTGT+CGG - chr1_3:50556801-50556820 Msa0123440:intron 15.0%
!!! AAAAATGTTAAGTTGTTTAA+TGG + chr1_3:50557574-50557593 None:intergenic 15.0%
!!! ATTAAACAACTTAACATTTT+TGG - chr1_3:50557573-50557592 Msa0123440:intron 15.0%
!! GTCAAAAAATTGTTAAAAAA+TGG + chr1_3:50557800-50557819 None:intergenic 15.0%
!! GAAAACAAATCAATAATTTA+TGG + chr1_3:50558014-50558033 None:intergenic 15.0%
!! GAATATTATACTAAATATGT+AGG - chr1_3:50558102-50558121 Msa0123440:intron 15.0%
!! ATATTATACTAAATATGTAG+GGG - chr1_3:50558104-50558123 Msa0123440:intron 15.0%
!! AATAAATAAGTTAGAAAATC+TGG + chr1_3:50558143-50558162 None:intergenic 15.0%
!!! CATTTTTTTTAAGTATTTAG+TGG + chr1_3:50558184-50558203 None:intergenic 15.0%
!!! ATATTTTGAGACAATTATTA+TGG - chr1_3:50558295-50558314 Msa0123440:intron 15.0%
!!! TATTTTGAGACAATTATTAT+GGG - chr1_3:50558296-50558315 Msa0123440:intron 15.0%
!!! TGTTATTTTTTAGTTTTACA+CGG + chr1_3:50558347-50558366 None:intergenic 15.0%
!! AATCAAATCAAAGAAAAAAT+CGG - chr1_3:50558607-50558626 Msa0123440:intron 15.0%
!! GAGAAAAAGAAATTTAAAAA+AGG - chr1_3:50558641-50558660 Msa0123440:intron 15.0%
!! AATTATAATTTGAAAACAAG+TGG - chr1_3:50558807-50558826 Msa0123440:intron 15.0%
!! ATTATAATTTGAAAACAAGT+GGG - chr1_3:50558808-50558827 Msa0123440:intron 15.0%
!!! GGTTCATTTATTTTATTTTT+AGG - chr1_3:50558938-50558957 Msa0123440:intron 15.0%
!! AAATATAATAAATGCTACAT+TGG - chr1_3:50559168-50559187 Msa0123440:intron 15.0%
!! AATAAATGTGTAAAATTCAA+AGG - chr1_3:50559666-50559685 Msa0123440:intron 15.0%
!!! CGTATTTGTTTAATTTAAAA+AGG + chr1_3:50559721-50559740 None:intergenic 15.0%
!!! ATTTTTAACCAAATAAGTTT+AGG - chr1_3:50559761-50559780 Msa0123440:intron 15.0%
!!! AATTGAACTTGTTATTTATA+TGG - chr1_3:50559942-50559961 Msa0123440:intron 15.0%
!!! TATGTTACTTATAACATATA+GGG + chr1_3:50560261-50560280 None:intergenic 15.0%
!!! TTATGTTACTTATAACATAT+AGG + chr1_3:50560262-50560281 None:intergenic 15.0%
!! GGCAAATATAAATATTAATT+TGG - chr1_3:50560482-50560501 Msa0123440:intron 15.0%
!!! CAAAGAAAGTTGTTATTAAA+AGG - chr1_3:50552747-50552766 Msa0123440:CDS 20.0%
!! CTCAAATTACGAATAAAATT+TGG + chr1_3:50553024-50553043 None:intergenic 20.0%
!!! CATTTTCTTTTTTTGTTCAA+TGG + chr1_3:50553075-50553094 None:intergenic 20.0%
!! ATAATAAATCCTAATGCAAA+TGG + chr1_3:50553586-50553605 None:intergenic 20.0%
!! TCATTATTTCCTTAAATGTT+AGG - chr1_3:50553792-50553811 Msa0123440:intron 20.0%
!!! TTAATTAAATTGCTTTTACG+TGG + chr1_3:50553998-50554017 None:intergenic 20.0%
!! AGTTTAAACTATTTCCAAAT+AGG + chr1_3:50554180-50554199 None:intergenic 20.0%
!! GGGATTTAATTAATATAGTT+GGG + chr1_3:50554334-50554353 None:intergenic 20.0%
!! TGGGATTTAATTAATATAGT+TGG + chr1_3:50554335-50554354 None:intergenic 20.0%
!!! AACATTTTTTTTTTAGGGAT+GGG + chr1_3:50554374-50554393 None:intergenic 20.0%
!!! AAACATTTTTTTTTTAGGGA+TGG + chr1_3:50554375-50554394 None:intergenic 20.0%
!!! GGACTAAACATTTTTTTTTT+AGG + chr1_3:50554380-50554399 None:intergenic 20.0%
!! ATTCTCTCTAATACAAATTT+AGG + chr1_3:50554484-50554503 None:intergenic 20.0%
!! CATTTATCTAAATCTAAAGA+CGG - chr1_3:50554584-50554603 Msa0123440:intron 20.0%
!! AGATTTGATATAGTGATAAA+AGG + chr1_3:50554645-50554664 None:intergenic 20.0%
!! AAAAAAATAGTGATTGATGT+TGG - chr1_3:50554776-50554795 Msa0123440:intron 20.0%
!!! TTATTATTTTTCAACATGAC+AGG - chr1_3:50555106-50555125 Msa0123440:intron 20.0%
!!! TATTATTTTTCAACATGACA+GGG - chr1_3:50555107-50555126 Msa0123440:intron 20.0%
!! ATGAAAAGTTCAATCTTAAT+TGG - chr1_3:50555578-50555597 Msa0123440:intron 20.0%
!! AAAAGTTGTGTAACAATTAT+GGG - chr1_3:50555809-50555828 Msa0123440:intron 20.0%
!! ATATAAACTATATGTGAAAG+AGG + chr1_3:50556453-50556472 None:intergenic 20.0%
!! GGTAGCTAAATATATAATAT+AGG + chr1_3:50556485-50556504 None:intergenic 20.0%
!! TATGGTAAATACACTTATTT+GGG + chr1_3:50556507-50556526 None:intergenic 20.0%
!! TTATGGTAAATACACTTATT+TGG + chr1_3:50556508-50556527 None:intergenic 20.0%
!! TTCTTGTTCTTACTAATTTA+TGG + chr1_3:50556525-50556544 None:intergenic 20.0%
!!! ATCTCTTTAGTTTTTATAGA+TGG - chr1_3:50556602-50556621 Msa0123440:intron 20.0%
!! TAAACAATAGAGAAAGAAAA+AGG - chr1_3:50556964-50556983 Msa0123440:intron 20.0%
!!! TGATGTTTTTGCTATTAAAA+AGG - chr1_3:50557412-50557431 Msa0123440:intron 20.0%
!!! ACGTTATTATGCTTTTTTTA+AGG + chr1_3:50557448-50557467 None:intergenic 20.0%
!!! TGTTTAATGGTTTAATTTAG+AGG + chr1_3:50557561-50557580 None:intergenic 20.0%
!! TATGTATAATTCATTCCTTT+AGG - chr1_3:50557727-50557746 Msa0123440:intron 20.0%
!! ATGTATAATTCATTCCTTTA+GGG - chr1_3:50557728-50557747 Msa0123440:intron 20.0%
!!! TTGATTGGTCAAAAATAATA+GGG + chr1_3:50557878-50557897 None:intergenic 20.0%
!!! TTTGATTGGTCAAAAATAAT+AGG + chr1_3:50557879-50557898 None:intergenic 20.0%
!!! CTGCTTTACATTTTTTTTTT+TGG + chr1_3:50558052-50558071 None:intergenic 20.0%
!!! TAATTTTAACCATAATTTGC+TGG + chr1_3:50558485-50558504 None:intergenic 20.0%
!!! AAGAACATAGTTATTTTAAG+AGG - chr1_3:50558719-50558738 Msa0123440:intron 20.0%
!! TTATAATTTGAAAACAAGTG+GGG - chr1_3:50558809-50558828 Msa0123440:intron 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG - chr1_3:50559048-50559067 Msa0123440:intron 20.0%
!! TTGATGAAATCCAATAAATA+AGG - chr1_3:50559131-50559150 Msa0123440:intron 20.0%
!! TGATGAAATCCAATAAATAA+GGG - chr1_3:50559132-50559151 Msa0123440:intron 20.0%
!!! ACTATTATACCCTTATTTAT+TGG + chr1_3:50559144-50559163 None:intergenic 20.0%
!!! AATAAATAAGGGTATAATAG+TGG - chr1_3:50559143-50559162 Msa0123440:intron 20.0%
!!! TTTTAATTATAAAAGTGACC+GGG + chr1_3:50559341-50559360 None:intergenic 20.0%
!!! GTTTTAATTATAAAAGTGAC+CGG + chr1_3:50559342-50559361 None:intergenic 20.0%
!! TATTGAAGTTATTGCTATAT+TGG + chr1_3:50560045-50560064 None:intergenic 20.0%
!!! ATGGTAATAATTCTCTTTTA+TGG + chr1_3:50560119-50560138 None:intergenic 20.0%
!! AAGAGAATTATTACCATAAA+AGG - chr1_3:50560122-50560141 Msa0123440:intron 20.0%
!! TTATATTTGCCTCAAATTAA+AGG + chr1_3:50560473-50560492 None:intergenic 20.0%
!! ATTAATACCAAATGATTCAA+AGG + chr1_3:50560656-50560675 None:intergenic 20.0%
! ATTCAATATGATTGCAGAAA+AGG - chr1_3:50552684-50552703 Msa0123440:CDS 25.0%
! TTCAATATGATTGCAGAAAA+GGG - chr1_3:50552685-50552704 Msa0123440:CDS 25.0%
! AATACTGTCTATTTGCATTA+AGG + chr1_3:50553105-50553124 None:intergenic 25.0%
!! CACATTTAAGACAAAAAATG+TGG - chr1_3:50553138-50553157 Msa0123440:intron 25.0%
!! TGAGTTTATCACCATTTTAA+GGG + chr1_3:50553173-50553192 None:intergenic 25.0%
!! TTTGATCTTCCATTTTGTTA+GGG - chr1_3:50553197-50553216 Msa0123440:intron 25.0%
!! GTATTCTTATCTAAGATCTT+TGG + chr1_3:50553237-50553256 None:intergenic 25.0%
! AAATTTAAGTACTCTCACTT+AGG - chr1_3:50553353-50553372 Msa0123440:intron 25.0%
! TATTCTTTCCTATAAATTGG+AGG + chr1_3:50553489-50553508 None:intergenic 25.0%
! TGCTATTCTTTCCTATAAAT+TGG + chr1_3:50553492-50553511 None:intergenic 25.0%
! AAATTACTACCATTTGCATT+AGG - chr1_3:50553574-50553593 Msa0123440:intron 25.0%
! ATAGAATTGACGATAGAATT+AGG + chr1_3:50553679-50553698 None:intergenic 25.0%
! AAATTTGAGAGACAAGTAAA+TGG - chr1_3:50554208-50554227 Msa0123440:intron 25.0%
! AGATAGATATTAGGGTTTAA+AGG - chr1_3:50554253-50554272 Msa0123440:intron 25.0%
! ATTAGAGAGAATCAAATTTG+AGG - chr1_3:50554492-50554511 Msa0123440:intron 25.0%
!! AATTGAAAAAGAACCCATTT+TGG + chr1_3:50554560-50554579 None:intergenic 25.0%
!! GTTTTATATCTAGAGGTTTT+GGG + chr1_3:50554618-50554637 None:intergenic 25.0%
!!! AGTTTTATATCTAGAGGTTT+TGG + chr1_3:50554619-50554638 None:intergenic 25.0%
!!! AGGATAAGTTTTATATCTAG+AGG + chr1_3:50554625-50554644 None:intergenic 25.0%
! TACAGTTGAACTAAATTAGT+AGG + chr1_3:50555186-50555205 None:intergenic 25.0%
! TACAGTTGAACTAAATTAGA+AGG + chr1_3:50555243-50555262 None:intergenic 25.0%
!! TTTGCGATTTTATATGACAA+AGG + chr1_3:50555298-50555317 None:intergenic 25.0%
!! CCATAAAAACTTACTTGTTT+TGG + chr1_3:50555789-50555808 None:intergenic 25.0%
!! CCAAAACAAGTAAGTTTTTA+TGG - chr1_3:50555786-50555805 Msa0123440:intron 25.0%
! GAAAAGTTGTGTAACAATTA+TGG - chr1_3:50555808-50555827 Msa0123440:intron 25.0%
! TACAAGTAGAAAATTTGTCT+TGG + chr1_3:50555858-50555877 None:intergenic 25.0%
! TTCACACTAAGTGAATATTA+AGG - chr1_3:50556119-50556138 Msa0123440:intron 25.0%
! ATGGTAAATACACTTATTTG+GGG + chr1_3:50556506-50556525 None:intergenic 25.0%
!! GAGATCAAAAGTGTAAAAAA+GGG + chr1_3:50556587-50556606 None:intergenic 25.0%
!! AGAGATCAAAAGTGTAAAAA+AGG + chr1_3:50556588-50556607 None:intergenic 25.0%
! AAATGCTAACTAATATCTGT+GGG + chr1_3:50557231-50557250 None:intergenic 25.0%
! AAAATGCTAACTAATATCTG+TGG + chr1_3:50557232-50557251 None:intergenic 25.0%
! AACCATTAGATTAATCCAAA+CGG - chr1_3:50557318-50557337 Msa0123440:intron 25.0%
! ATTAACCAAATGTATCAAGA+CGG + chr1_3:50557483-50557502 None:intergenic 25.0%
! AAAATAATAGGGAGAGAAAA+AGG + chr1_3:50557867-50557886 None:intergenic 25.0%
!! TACAACTTTTATGACAACTT+TGG + chr1_3:50557912-50557931 None:intergenic 25.0%
! CAAATCAATAATTTATGGGA+CGG + chr1_3:50558009-50558028 None:intergenic 25.0%
! ATGATGCATATGATCTTAAT+TGG - chr1_3:50558236-50558255 Msa0123440:intron 25.0%
! AAACAAAATCCAGCAAATTA+TGG - chr1_3:50558473-50558492 Msa0123440:intron 25.0%
!! GAAAAAGTATACTACATGAA+AGG + chr1_3:50558582-50558601 None:intergenic 25.0%
! TATAATTTGAAAACAAGTGG+GGG - chr1_3:50558810-50558829 Msa0123440:intron 25.0%
! AAACGATTAATATTGTGAGA+CGG + chr1_3:50558999-50559018 None:intergenic 25.0%
! CTCACAATATTAATCGTTTA+AGG - chr1_3:50559000-50559019 Msa0123440:intron 25.0%
! TCACCAACTACAATTAATAA+GGG + chr1_3:50559100-50559119 None:intergenic 25.0%
! TTCACCAACTACAATTAATA+AGG + chr1_3:50559101-50559120 None:intergenic 25.0%
! AAGAAACAATAATTGTGAGA+CGG - chr1_3:50559234-50559253 Msa0123440:intron 25.0%
! TTTAATTATAAAAGTGACCG+GGG + chr1_3:50559340-50559359 None:intergenic 25.0%
! CACATTCACTCTAATAAATA+AGG - chr1_3:50559586-50559605 Msa0123440:intron 25.0%
! AAGGAACACTTAATTTAAGA+TGG - chr1_3:50559685-50559704 Msa0123440:intron 25.0%
!! CTTTTTGACCTAAACTTATT+TGG + chr1_3:50559772-50559791 None:intergenic 25.0%
!! ACTTGAAGTAATCTTATTTG+AGG + chr1_3:50559880-50559899 None:intergenic 25.0%
! TCAAATAAGATTACTTCAAG+TGG - chr1_3:50559879-50559898 Msa0123440:intron 25.0%
!! TCAAAAACAGTTTCCTTTTA+TGG + chr1_3:50560138-50560157 None:intergenic 25.0%
! TTCAATTATGGATATGGATT+TGG + chr1_3:50560431-50560450 None:intergenic 25.0%
! GTTGTATTCAATTATGGATA+TGG + chr1_3:50560437-50560456 None:intergenic 25.0%
! ATTCAAAGGAAATTTCTGAA+GGG + chr1_3:50560642-50560661 None:intergenic 25.0%
! GAAATTTCCTTTGAATCATT+TGG - chr1_3:50560646-50560665 Msa0123440:intron 25.0%
! ATTGCAGAATAATACTAAGA+TGG - chr1_3:50560792-50560811 Msa0123440:intron 25.0%
! GATCAAAAGTCATCATATAT+AGG - chr1_3:50560814-50560833 Msa0123440:intron 25.0%
! GTGTAAACAATAATAAAGCA+GGG - chr1_3:50561118-50561137 Msa0123440:CDS 25.0%
! TGCTCAATTTTTCTGTTCAA+AGG - chr1_3:50552640-50552659 Msa0123440:CDS 30.0%
! GCTCAATTTTTCTGTTCAAA+GGG - chr1_3:50552641-50552660 Msa0123440:CDS 30.0%
! AAAGGTGTAAAGAATAAAGC+AGG - chr1_3:50552765-50552784 Msa0123440:CDS 30.0%
AAGGTGTAAAGAATAAAGCA+GGG - chr1_3:50552766-50552785 Msa0123440:CDS 30.0%
! GTGAGTTTATCACCATTTTA+AGG + chr1_3:50553174-50553193 None:intergenic 30.0%
! CTTTGATCTTCCATTTTGTT+AGG - chr1_3:50553196-50553215 Msa0123440:intron 30.0%
TATTGTTTGCAAGTAAGCTA+GGG + chr1_3:50553702-50553721 None:intergenic 30.0%
TTATTGTTTGCAAGTAAGCT+AGG + chr1_3:50553703-50553722 None:intergenic 30.0%
! AAGGAGAGACAAATTAGTTT+GGG + chr1_3:50553882-50553901 None:intergenic 30.0%
GTCTTGTAATTTCTTCCATT+TGG - chr1_3:50553916-50553935 Msa0123440:intron 30.0%
!!! TTTTTTCCCCTTATTTGTTG+AGG - chr1_3:50553967-50553986 Msa0123440:intron 30.0%
!! TTTTTCCCCTTATTTGTTGA+GGG - chr1_3:50553968-50553987 Msa0123440:intron 30.0%
AAAACTGTTTAGCCAAAACA+AGG - chr1_3:50554039-50554058 Msa0123440:intron 30.0%
AAACTGTTTAGCCAAAACAA+GGG - chr1_3:50554040-50554059 Msa0123440:intron 30.0%
TTGGAGGAAGATAGATATTA+GGG - chr1_3:50554245-50554264 Msa0123440:intron 30.0%
TAGATATTAGGGTTTAAAGG+AGG - chr1_3:50554256-50554275 Msa0123440:intron 30.0%
!!! ATTTTTTTTTTAGGGATGGG+TGG + chr1_3:50554371-50554390 None:intergenic 30.0%
!! AGACTTCTTTTGAGAGAATA+GGG + chr1_3:50554404-50554423 None:intergenic 30.0%
!! AAGACTTCTTTTGAGAGAAT+AGG + chr1_3:50554405-50554424 None:intergenic 30.0%
!! TGATGTTGGTTTCTATTATG+TGG - chr1_3:50554790-50554809 Msa0123440:intron 30.0%
!! GATGTTGGTTTCTATTATGT+GGG - chr1_3:50554791-50554810 Msa0123440:intron 30.0%
TGTAACTTTAACATCAGTGA+AGG - chr1_3:50554957-50554976 Msa0123440:intron 30.0%
GAAAAAATTTGCCATCACAA+GGG + chr1_3:50555038-50555057 None:intergenic 30.0%
TGAAAAAATTTGCCATCACA+AGG + chr1_3:50555039-50555058 None:intergenic 30.0%
ACCTCAAATCCATTAAAACT+AGG + chr1_3:50555140-50555159 None:intergenic 30.0%
AGTTGAACTAAATTAGTAGG+AGG + chr1_3:50555183-50555202 None:intergenic 30.0%
! TCTTTTTCTCCTTCTATTTG+AGG - chr1_3:50555207-50555226 Msa0123440:intron 30.0%
! TCTTTTTCTCCTTCTATTTG+AGG - chr1_3:50555207-50555226 Msa0123440:intron 30.0%
!! TTGCTTTGAAAGTAATCCAA+TGG - chr1_3:50555673-50555692 Msa0123440:intron 30.0%
GTAAATTGTGAGATTTCCAT+TGG + chr1_3:50555692-50555711 None:intergenic 30.0%
AGAGTTCAAAAGGTGAAAAA+AGG - chr1_3:50556073-50556092 Msa0123440:intron 30.0%
ACACTAAGTGAATATTAAGG+CGG - chr1_3:50556122-50556141 Msa0123440:intron 30.0%
!!! TCTTGTCCATGTTTTTTAGA+CGG + chr1_3:50556255-50556274 None:intergenic 30.0%
AACAACATACATTCGAGTAT+GGG + chr1_3:50556430-50556449 None:intergenic 30.0%
GTCAAAAAGTTGTCAAAAAG+TGG - chr1_3:50557031-50557050 Msa0123440:intron 30.0%
TACGCAAACATGATTAATGA+TGG - chr1_3:50557112-50557131 Msa0123440:intron 30.0%
GATACTAGTACAAAGAAACT+AGG - chr1_3:50557147-50557166 Msa0123440:intron 30.0%
AAACAGAATGTAGAGGAAAT+TGG + chr1_3:50557392-50557411 None:intergenic 30.0%
AACATCAAAACAGAATGTAG+AGG + chr1_3:50557399-50557418 None:intergenic 30.0%
TTAACCAAATGTATCAAGAC+GGG + chr1_3:50557482-50557501 None:intergenic 30.0%
TGACAAGTTGTCTAAACAAT+TGG - chr1_3:50557507-50557526 Msa0123440:intron 30.0%
!! AGATTTTAGAGAGTTTGGTT+GGG + chr1_3:50557638-50557657 None:intergenic 30.0%
!! TCAACAGATTTTAGAGAGTT+TGG + chr1_3:50557643-50557662 None:intergenic 30.0%
ATGTCTGCTAAATATGTCAT+TGG - chr1_3:50557665-50557684 Msa0123440:intron 30.0%
!! TTGGTTTTCTCTCTTTTGAT+TGG + chr1_3:50557893-50557912 None:intergenic 30.0%
GTGATATTTGTACAACTCTT+TGG + chr1_3:50557935-50557954 None:intergenic 30.0%
! TTTTTGATAGGATAATGTGC+TGG + chr1_3:50558456-50558475 None:intergenic 30.0%
!!! TGCTGGATTTTGTTTTTGAT+AGG + chr1_3:50558468-50558487 None:intergenic 30.0%
ACAAGTAAAGAAGAAAACAG+AGG - chr1_3:50558518-50558537 Msa0123440:intron 30.0%
! CTTAATTTGATTGCCAACTT+AGG + chr1_3:50558702-50558721 None:intergenic 30.0%
TAAAATAAATGAACCACGTG+AGG + chr1_3:50558933-50558952 None:intergenic 30.0%
AGGTTTGTACACGATTATTA+AGG - chr1_3:50559020-50559039 Msa0123440:intron 30.0%
ACACCCTTATTAATTGTAGT+TGG - chr1_3:50559094-50559113 Msa0123440:intron 30.0%
TTAATTATAAAAGTGACCGG+GGG + chr1_3:50559339-50559358 None:intergenic 30.0%
AAGTTTAGGTCAAAAAGAAG+AGG - chr1_3:50559775-50559794 Msa0123440:intron 30.0%
AATAAGATTACTTCAAGTGG+AGG - chr1_3:50559882-50559901 Msa0123440:intron 30.0%
!!! ACATGCACATGTTATTTTCT+AGG + chr1_3:50559911-50559930 None:intergenic 30.0%
GAAAATAACATGTGCATGTA+TGG - chr1_3:50559912-50559931 Msa0123440:intron 30.0%
ACTGGTTAAGGATATGAAAA+AGG + chr1_3:50560213-50560232 None:intergenic 30.0%
AGGTTTGACCAATAATTTGA+AGG - chr1_3:50560527-50560546 Msa0123440:intron 30.0%
GGTTTGACCAATAATTTGAA+GGG - chr1_3:50560528-50560547 Msa0123440:intron 30.0%
GTTTGACCAATAATTTGAAG+GGG - chr1_3:50560529-50560548 Msa0123440:intron 30.0%
GATTCAAAGGAAATTTCTGA+AGG + chr1_3:50560643-50560662 None:intergenic 30.0%
TGAGAAATCGATCATATCAA+AGG + chr1_3:50560692-50560711 None:intergenic 30.0%
! TGCTCAATTTTTCTGTTCAA+AGG - chr1_3:50552640-50552659 Msa0123440:CDS 30.0%
! GCTCAATTTTTCTGTTCAAA+GGG - chr1_3:50552641-50552660 Msa0123440:CDS 30.0%
ATTCAATATGATTGCAGAGA+AGG - chr1_3:50561033-50561052 Msa0123440:CDS 30.0%
TTCAATATGATTGCAGAGAA+GGG - chr1_3:50561034-50561053 Msa0123440:CDS 30.0%
CAAAGAAAGATGTCATCAAA+AGG - chr1_3:50561096-50561115 Msa0123440:intron 30.0%
GGTGTAAACAATAATAAAGC+AGG - chr1_3:50561117-50561136 Msa0123440:CDS 30.0%
!!! ATCAAGTGTTTTGGTGTTAG+AGG - chr1_3:50552809-50552828 Msa0123440:CDS 35.0%
!!! TGTTTTGGTGTTAGAGGATT+TGG - chr1_3:50552815-50552834 Msa0123440:CDS 35.0%
!!! GTTTTGGTGTTAGAGGATTT+GGG - chr1_3:50552816-50552835 Msa0123440:CDS 35.0%
! AATCAAAGTACTAGCAGCAA+CGG - chr1_3:50552876-50552895 Msa0123440:CDS 35.0%
ACAAAACTAAACACGTTGAG+CGG + chr1_3:50552974-50552993 None:intergenic 35.0%
GCAGATTTACCCTAACAAAA+TGG + chr1_3:50553209-50553228 None:intergenic 35.0%
! GTGTTCTCTTACTGTTTTCT+TGG + chr1_3:50553265-50553284 None:intergenic 35.0%
TGTAGAGTGATATGCAATTC+AGG + chr1_3:50553334-50553353 None:intergenic 35.0%
! TGCTTTCTTCTCTTGCTATA+TGG - chr1_3:50553436-50553455 Msa0123440:intron 35.0%
TTGCAAGACCTCCAATTTAT+AGG - chr1_3:50553478-50553497 Msa0123440:intron 35.0%
CAAGGAGAGACAAATTAGTT+TGG + chr1_3:50553883-50553902 None:intergenic 35.0%
AAGACCTCTCTCTAAATACA+AGG + chr1_3:50553901-50553920 None:intergenic 35.0%
AGTAGAGAACTTTCACCAAA+TGG + chr1_3:50553934-50553953 None:intergenic 35.0%
AAATAAGGGGAAAAAACCAC+GGG + chr1_3:50553963-50553982 None:intergenic 35.0%
CAAATAAGGGGAAAAAACCA+CGG + chr1_3:50553964-50553983 None:intergenic 35.0%
!! TTTTCCCCTTATTTGTTGAG+GGG - chr1_3:50553969-50553988 Msa0123440:intron 35.0%
TAGCCAAAACAAGGGAAATT+AGG - chr1_3:50554048-50554067 Msa0123440:intron 35.0%
!! CTTCCTAATTTCCCTTGTTT+TGG + chr1_3:50554054-50554073 None:intergenic 35.0%
ACTATTTCCAAATAGGCTGT+TGG + chr1_3:50554173-50554192 None:intergenic 35.0%
!!! AATGGCGTTTGTTGTTTTGT+TGG - chr1_3:50554226-50554245 Msa0123440:intron 35.0%
GTTGGAGGAAGATAGATATT+AGG - chr1_3:50554244-50554263 Msa0123440:intron 35.0%
AGAGAGAATCAAATTTGAGG+AGG - chr1_3:50554495-50554514 Msa0123440:intron 35.0%
!! GAAAAAGAACCCATTTTGGT+TGG + chr1_3:50554556-50554575 None:intergenic 35.0%
AAAATTTGGGCCCCAAAATT+GGG + chr1_3:50554882-50554901 None:intergenic 35.0%
AAAAATTTGGGCCCCAAAAT+TGG + chr1_3:50554883-50554902 None:intergenic 35.0%
!!! GCCTAGTTTTAATGGATTTG+AGG - chr1_3:50555136-50555155 Msa0123440:intron 35.0%
! TCCTTCTATTTGAGGTCTAA+TGG - chr1_3:50555215-50555234 Msa0123440:intron 35.0%
! TCCTTCTATTTGAGGTCTAA+TGG - chr1_3:50555215-50555234 Msa0123440:intron 35.0%
TCGGCTCTCTTAGTAAAAAT+TGG + chr1_3:50555424-50555443 None:intergenic 35.0%
TTCTTAAAAAATCGGAGGCT+CGG + chr1_3:50555443-50555462 None:intergenic 35.0%
!!! AGCCTCCGATTTTTTAAGAA+CGG - chr1_3:50555443-50555462 Msa0123440:intron 35.0%
ATGCTTAACCAATACCTTTG+GGG + chr1_3:50555766-50555785 None:intergenic 35.0%
GATGCTTAACCAATACCTTT+GGG + chr1_3:50555767-50555786 None:intergenic 35.0%
ATACGAACTCATAGATGAGT+TGG - chr1_3:50556146-50556165 Msa0123440:intron 35.0%
!!! AACGTTTTTTGTTCGTGTCT+TGG + chr1_3:50556207-50556226 None:intergenic 35.0%
GTCTAAAAAACATGGACAAG+AGG - chr1_3:50556254-50556273 Msa0123440:intron 35.0%
!!! TGGGTTTTTTTGTTAGAGAG+AGG - chr1_3:50556365-50556384 Msa0123440:intron 35.0%
GAACAACATACATTCGAGTA+TGG + chr1_3:50556431-50556450 None:intergenic 35.0%
GCTAGCAACATCTTTACTAA+GGG + chr1_3:50556908-50556927 None:intergenic 35.0%
AGCTAGCAACATCTTTACTA+AGG + chr1_3:50556909-50556928 None:intergenic 35.0%
AAGAAACTAGGCAAAATGCA+AGG - chr1_3:50557159-50557178 Msa0123440:intron 35.0%
TATCTGTGGGACATTAGTTA+AGG + chr1_3:50557218-50557237 None:intergenic 35.0%
AGCCGTTTGGATTAATCTAA+TGG + chr1_3:50557323-50557342 None:intergenic 35.0%
! TTTTCCCGTCTTGATACATT+TGG - chr1_3:50557475-50557494 Msa0123440:intron 35.0%
!! GATTTTAGAGAGTTTGGTTG+GGG + chr1_3:50557637-50557656 None:intergenic 35.0%
!! CAGATTTTAGAGAGTTTGGT+TGG + chr1_3:50557639-50557658 None:intergenic 35.0%
ATAGTACACACATGATGACA+TGG + chr1_3:50557710-50557729 None:intergenic 35.0%
!! AATTCATTCCTTTAGGGCTA+AGG - chr1_3:50557734-50557753 Msa0123440:intron 35.0%
!! ATTCATTCCTTTAGGGCTAA+GGG - chr1_3:50557735-50557754 Msa0123440:intron 35.0%
TCAATAATTTATGGGACGGA+AGG + chr1_3:50558005-50558024 None:intergenic 35.0%
CGAACTAAGTTATACTCACA+AGG + chr1_3:50558079-50558098 None:intergenic 35.0%
TTGAGACAATTATTATGGGC+AGG - chr1_3:50558300-50558319 Msa0123440:intron 35.0%
AATTGCATTAGCTGAACTTG+AGG + chr1_3:50558405-50558424 None:intergenic 35.0%
TATCACTCAATTGCCTAAGT+TGG - chr1_3:50558686-50558705 Msa0123440:intron 35.0%
AACTAGTTGCATATGAAGAG+AGG - chr1_3:50558882-50558901 Msa0123440:intron 35.0%
GATTAATATTGTGAGACGGA+GGG + chr1_3:50558995-50559014 None:intergenic 35.0%
AACAATAATTGTGAGACGGA+AGG - chr1_3:50559238-50559257 Msa0123440:intron 35.0%
ATACTCCACAGTCTCAAATT+AGG - chr1_3:50559297-50559316 Msa0123440:intron 35.0%
!!! TGCACATGTTATTTTCTAGG+TGG + chr1_3:50559908-50559927 None:intergenic 35.0%
ACATATAGGGAAATGCTAAC+CGG + chr1_3:50560248-50560267 None:intergenic 35.0%
CTGCAGGTTGTATTCAATTA+TGG + chr1_3:50560443-50560462 None:intergenic 35.0%
TAATTGAATACAACCTGCAG+TGG - chr1_3:50560443-50560462 Msa0123440:intron 35.0%
AATTGAATACAACCTGCAGT+GGG - chr1_3:50560444-50560463 Msa0123440:intron 35.0%
TGTCTTCCCCTTCAAATTAT+TGG + chr1_3:50560538-50560557 None:intergenic 35.0%
TGGTTTCTGTTAATGCTTCT+TGG + chr1_3:50560561-50560580 None:intergenic 35.0%
CTTGCAGCATTTCTATATCT+TGG + chr1_3:50560618-50560637 None:intergenic 35.0%
CAAGATATAGAAATGCTGCA+AGG - chr1_3:50560616-50560635 Msa0123440:intron 35.0%
! GACTCCAACATCAATTGTTT+TGG + chr1_3:50560748-50560767 None:intergenic 35.0%
! ATCAGAAGGATCAAGTGTTT+TGG - chr1_3:50561152-50561171 Msa0123440:CDS 35.0%
!!! TGTTTTGGTGTTAGAAGACT+TGG - chr1_3:50561167-50561186 Msa0123440:CDS 35.0%
!!! GTTTTGGTGTTAGAAGACTT+GGG - chr1_3:50561168-50561187 Msa0123440:CDS 35.0%
! CAAGCTGCATTTTCAATGAG+AGG - chr1_3:50552606-50552625 Msa0123440:CDS 40.0%
AGGGAAACAAGATCAATCAG+AGG - chr1_3:50552785-50552804 Msa0123440:CDS 40.0%
GGGAAACAAGATCAATCAGA+GGG - chr1_3:50552786-50552805 Msa0123440:CDS 40.0%
! ATCAGAGGGATCAAGTGTTT+TGG - chr1_3:50552800-50552819 Msa0123440:CDS 40.0%
CAAAAGGAATCAAGGGAGAT+AGG + chr1_3:50553641-50553660 None:intergenic 40.0%
GGTAGCTCAAAAGGAATCAA+GGG + chr1_3:50553648-50553667 None:intergenic 40.0%
AGGTAGCTCAAAAGGAATCA+AGG + chr1_3:50553649-50553668 None:intergenic 40.0%
CACTCGTGACCTAACATTTA+AGG + chr1_3:50553804-50553823 None:intergenic 40.0%
CTTAAATGTTAGGTCACGAG+TGG - chr1_3:50553802-50553821 Msa0123440:intron 40.0%
CTCTCCTTGTATTTAGAGAG+AGG - chr1_3:50553894-50553913 Msa0123440:intron 40.0%
AATAAGGGGAAAAAACCACG+GGG + chr1_3:50553962-50553981 None:intergenic 40.0%
GAAACCCCTCAACAAATAAG+GGG + chr1_3:50553976-50553995 None:intergenic 40.0%
GGAAACCCCTCAACAAATAA+GGG + chr1_3:50553977-50553996 None:intergenic 40.0%
TGGAAACCCCTCAACAAATA+AGG + chr1_3:50553978-50553997 None:intergenic 40.0%
!! TCAGTAGTTCTGAATACACG+AGG + chr1_3:50554081-50554100 None:intergenic 40.0%
!! CTTCTTTTGAGAGAATAGGG+AGG + chr1_3:50554401-50554420 None:intergenic 40.0%
!!! GTGGTTTTGACTTAGGATCT+AGG + chr1_3:50554529-50554548 None:intergenic 40.0%
GATGCATATTGTATGCACCA+GGG - chr1_3:50554813-50554832 Msa0123440:intron 40.0%
AAATTTGGGCCCCAAAATTG+GGG + chr1_3:50554881-50554900 None:intergenic 40.0%
! CGTGTTATGCTTGTTAACTG+CGG - chr1_3:50555004-50555023 Msa0123440:intron 40.0%
GCCATTAGACCTCAAATAGA+AGG + chr1_3:50555219-50555238 None:intergenic 40.0%
GCCATTAGACCTCAAATAGA+AGG + chr1_3:50555219-50555238 None:intergenic 40.0%
CAGGGCCGTTCTTAAAAAAT+CGG + chr1_3:50555451-50555470 None:intergenic 40.0%
GACTACATGATTGCATACCA+GGG + chr1_3:50555469-50555488 None:intergenic 40.0%
TCATGTAGTCGATGCATTTC+TGG - chr1_3:50555479-50555498 Msa0123440:intron 40.0%
GGATGCTTAACCAATACCTT+TGG + chr1_3:50555768-50555787 None:intergenic 40.0%
AAACTCACCTATGAGCAACA+GGG - chr1_3:50556172-50556191 Msa0123440:intron 40.0%
TTTGTTCGTGTCTTGGATCT+TGG + chr1_3:50556200-50556219 None:intergenic 40.0%
GAACCACCGTCTAAAAAACA+TGG - chr1_3:50556246-50556265 Msa0123440:intron 40.0%
!!! TGTCCATGTTTTTTAGACGG+TGG + chr1_3:50556252-50556271 None:intergenic 40.0%
! TTTTGTTAGAGAGAGGTCAG+TGG - chr1_3:50556372-50556391 Msa0123440:intron 40.0%
TCTCCTCCTATTACACATAG+TGG + chr1_3:50556935-50556954 None:intergenic 40.0%
TAATCCAAACGGCTGAGAAT+AGG - chr1_3:50557329-50557348 Msa0123440:intron 40.0%
AATCCAAACGGCTGAGAATA+GGG - chr1_3:50557330-50557349 Msa0123440:intron 40.0%
TATGGATAACTCCGTTGTTG+AGG - chr1_3:50557364-50557383 Msa0123440:intron 40.0%
GGAAATTGGATCCTCAACAA+CGG + chr1_3:50557378-50557397 None:intergenic 40.0%
CCGGTGAGCATATATATACA+CGG + chr1_3:50558380-50558399 None:intergenic 40.0%
CCGTGTATATATATGCTCAC+CGG - chr1_3:50558377-50558396 Msa0123440:intron 40.0%
CGTGTATATATATGCTCACC+GGG - chr1_3:50558378-50558397 Msa0123440:intron 40.0%
GTGTATATATATGCTCACCG+GGG - chr1_3:50558379-50558398 Msa0123440:intron 40.0%
GTGAGGTAAATGTATGTACC+CGG + chr1_3:50558916-50558935 None:intergenic 40.0%
GTACATACATTTACCTCACG+TGG - chr1_3:50558917-50558936 Msa0123440:intron 40.0%
AGTAGCAAATCGGATTTGCA+AGG + chr1_3:50558972-50558991 None:intergenic 40.0%
CGATTAATATTGTGAGACGG+AGG + chr1_3:50558996-50559015 None:intergenic 40.0%
! TGACACCTAATTTGAGACTG+TGG + chr1_3:50559305-50559324 None:intergenic 40.0%
AGAGGTTAAACTCCCACAAT+AGG - chr1_3:50559793-50559812 Msa0123440:intron 40.0%
ACATTCGTTCGTCCTATTGT+GGG + chr1_3:50559808-50559827 None:intergenic 40.0%
AACATTCGTTCGTCCTATTG+TGG + chr1_3:50559809-50559828 None:intergenic 40.0%
TATATTAGGGTCCTGCTAAC+CGG - chr1_3:50560068-50560087 Msa0123440:intron 40.0%
TAGATTCTCTCGACCTGTTT+CGG - chr1_3:50560325-50560344 Msa0123440:intron 40.0%
! CATAGTTTTTGTCCCGAAAC+AGG + chr1_3:50560341-50560360 None:intergenic 40.0%
ATTGAATACAACCTGCAGTG+GGG - chr1_3:50560445-50560464 Msa0123440:intron 40.0%
TAACAGAAACCATGCCTCAT+AGG - chr1_3:50560569-50560588 Msa0123440:intron 40.0%
AAAGAGGAACAACTCCTATG+AGG + chr1_3:50560586-50560605 None:intergenic 40.0%
GCATTTCTATATCTTGGCTG+TGG + chr1_3:50560612-50560631 None:intergenic 40.0%
!!! CAATTGTTTTGGCTCGTCTT+CGG + chr1_3:50560737-50560756 None:intergenic 40.0%
CGAGCCAAAACAATTGATGT+TGG - chr1_3:50560741-50560760 Msa0123440:intron 40.0%
TAGGTGTGAGAAAAAGACCT+TGG - chr1_3:50560833-50560852 Msa0123440:intron 40.0%
AGGTGTGAGAAAAAGACCTT+GGG - chr1_3:50560834-50560853 Msa0123440:intron 40.0%
! CAAGCTGCATTTTCAATGAG+AGG - chr1_3:50552606-50552625 Msa0123440:CDS 40.0%
GGGAAACAAGATCAATCAGA+AGG - chr1_3:50552786-50552805 Msa0123440:CDS 40.0%
GAGATCAGAGACACAACAAG+AGG - chr1_3:50552522-50552541 Msa0123440:CDS 45.0%
ATCAGAGACACAACAAGAGG+AGG - chr1_3:50552525-50552544 Msa0123440:CDS 45.0%
ACACAACAAGAGGAGGAAGA+AGG - chr1_3:50552532-50552551 Msa0123440:CDS 45.0%
CACAACAAGAGGAGGAAGAA+GGG - chr1_3:50552533-50552552 Msa0123440:CDS 45.0%
! CTCTCTTTTAGTGCAAGTGC+AGG + chr1_3:50552717-50552736 None:intergenic 45.0%
CTGCACTTGCACTAAAAGAG+AGG - chr1_3:50552715-50552734 Msa0123440:CDS 45.0%
GGCAACACATGCCCTTAAAA+TGG - chr1_3:50553159-50553178 Msa0123440:intron 45.0%
CGATAGAATTAGGCGATGAG+AGG + chr1_3:50553669-50553688 None:intergenic 45.0%
TGATGTCTCTCTCACTTGTG+TGG + chr1_3:50553851-50553870 None:intergenic 45.0%
CGAAAGACCAACAGCCTATT+TGG - chr1_3:50554163-50554182 Msa0123440:intron 45.0%
!!! GGCGTTTGTTGTTTTGTTGG+AGG - chr1_3:50554229-50554248 Msa0123440:intron 45.0%
!! GGGTGGACTAAACATAGTGT+GGG + chr1_3:50554354-50554373 None:intergenic 45.0%
!! TGGGTGGACTAAACATAGTG+TGG + chr1_3:50554355-50554374 None:intergenic 45.0%
!!! TGGTCTGGTGGTTTTGACTT+AGG + chr1_3:50554536-50554555 None:intergenic 45.0%
AACCACCAGACCAACCAAAA+TGG - chr1_3:50554543-50554562 Msa0123440:intron 45.0%
ACCACCAGACCAACCAAAAT+GGG - chr1_3:50554544-50554563 Msa0123440:intron 45.0%
!!! AGAACCCATTTTGGTTGGTC+TGG + chr1_3:50554551-50554570 None:intergenic 45.0%
GGATGCATATTGTATGCACC+AGG - chr1_3:50554812-50554831 Msa0123440:intron 45.0%
TGCAAACAGCTCTATAGAGC+TGG - chr1_3:50554851-50554870 Msa0123440:intron 45.0%
GCAAACAGCTCTATAGAGCT+GGG - chr1_3:50554852-50554871 Msa0123440:intron 45.0%
! TTTCAACATGACAGGGTGTC+TGG - chr1_3:50555114-50555133 Msa0123440:intron 45.0%
!!! GGTGTCTGGCCTAGTTTTAA+TGG - chr1_3:50555128-50555147 Msa0123440:intron 45.0%
GGCCGTTCTTAAAAAATCGG+AGG + chr1_3:50555448-50555467 None:intergenic 45.0%
!!! CGATTTTTTAAGAACGGCCC+TGG - chr1_3:50555449-50555468 Msa0123440:intron 45.0%
CGACTACATGATTGCATACC+AGG + chr1_3:50555470-50555489 None:intergenic 45.0%
AATGCTAACTAGTGCCCCAA+AGG - chr1_3:50555749-50555768 Msa0123440:intron 45.0%
! AACTAGTGCCCCAAAGGTAT+TGG - chr1_3:50555755-50555774 Msa0123440:intron 45.0%
ATTCCTTAACCATTGCCCTG+AGG - chr1_3:50555879-50555898 Msa0123440:intron 45.0%
TTCCTTAACCATTGCCCTGA+GGG - chr1_3:50555880-50555899 Msa0123440:intron 45.0%
GCAAGGAATCCATAACGAGT+GGG - chr1_3:50556035-50556054 Msa0123440:intron 45.0%
CAAGGAATCCATAACGAGTG+GGG - chr1_3:50556036-50556055 Msa0123440:intron 45.0%
AGCGTGCTAGAGAGTTCAAA+AGG - chr1_3:50556063-50556082 Msa0123440:intron 45.0%
GAAACTCACCTATGAGCAAC+AGG - chr1_3:50556171-50556190 Msa0123440:intron 45.0%
TTCCAAGATGTAGAGGATGG+TGG + chr1_3:50556314-50556333 None:intergenic 45.0%
GTGTTCCAAGATGTAGAGGA+TGG + chr1_3:50556317-50556336 None:intergenic 45.0%
TCCTCTACATCTTGGAACAC+AGG - chr1_3:50556317-50556336 Msa0123440:intron 45.0%
CCTCTACATCTTGGAACACA+GGG - chr1_3:50556318-50556337 Msa0123440:intron 45.0%
CATCTTGGAACACAGGGATT+TGG - chr1_3:50556324-50556343 Msa0123440:intron 45.0%
! AACACAGGGATTTGGAACAG+AGG - chr1_3:50556332-50556351 Msa0123440:intron 45.0%
! ACACAGGGATTTGGAACAGA+GGG - chr1_3:50556333-50556352 Msa0123440:intron 45.0%
GCTTCGCCACTATGTGTAAT+AGG - chr1_3:50556926-50556945 Msa0123440:intron 45.0%
TCGCCACTATGTGTAATAGG+AGG - chr1_3:50556929-50556948 Msa0123440:intron 45.0%
AATAGGGCAGTAGGAAGCTA+TGG - chr1_3:50557346-50557365 Msa0123440:intron 45.0%
TTTAGAGAGTTTGGTTGGGG+AGG + chr1_3:50557634-50557653 None:intergenic 45.0%
TGACATGGTCACACTCACAT+GGG + chr1_3:50557695-50557714 None:intergenic 45.0%
ATGACATGGTCACACTCACA+TGG + chr1_3:50557696-50557715 None:intergenic 45.0%
TCACTTTCCCTTAGCCCTAA+AGG + chr1_3:50557745-50557764 None:intergenic 45.0%
ATTTATGGGACGGAAGGAGT+AGG + chr1_3:50557999-50558018 None:intergenic 45.0%
GCAATTCCTTGTCTTCCTGA+CGG - chr1_3:50558419-50558438 Msa0123440:intron 45.0%
TATCAACCGTCAGGAAGACA+AGG + chr1_3:50558428-50558447 None:intergenic 45.0%
GAAAACAAGTGGGGGAAGAT+AGG - chr1_3:50558818-50558837 Msa0123440:intron 45.0%
AGGTAAATGTATGTACCCGG+TGG + chr1_3:50558913-50558932 None:intergenic 45.0%
TGTCATCTTTACTACTCCCC+CGG - chr1_3:50559320-50559339 Msa0123440:intron 45.0%
AGATTCTCTCGACCTGTTTC+GGG - chr1_3:50560326-50560345 Msa0123440:intron 45.0%
!! AGTGGGGCACCTTTAATTTG+AGG - chr1_3:50560461-50560480 Msa0123440:intron 45.0%
ATCTTGGCTGTGGAACAAAG+AGG + chr1_3:50560602-50560621 None:intergenic 45.0%
! TTTGGCTCGTCTTCGGTAAT+TGG + chr1_3:50560730-50560749 None:intergenic 45.0%
GGTGTGAGAAAAAGACCTTG+GGG - chr1_3:50560835-50560854 Msa0123440:intron 45.0%
GAGATCAGAGACACAACAAG+AGG - chr1_3:50552522-50552541 Msa0123440:CDS 45.0%
ATCAGAGACACAACAAGAGG+AGG - chr1_3:50552525-50552544 Msa0123440:CDS 45.0%
ACACAACAAGAGGAGGAAGA+AGG - chr1_3:50552532-50552551 Msa0123440:CDS 45.0%
CACAACAAGAGGAGGAAGAA+GGG - chr1_3:50552533-50552552 Msa0123440:CDS 45.0%
! TAGTGCTGAAGATGCTGCTT+TGG - chr1_3:50552575-50552594 Msa0123440:CDS 45.0%
!!! ATGTTTTATTATTTTTATTA+TGG - chr1_3:50555058-50555077 Msa0123440:intron 5.0%
!!! AAAAAATTGTATTTTTTTTA+GGG - chr1_3:50555397-50555416 Msa0123440:intron 5.0%
!! TTAAATAACTATAATAAAAA+GGG + chr1_3:50555959-50555978 None:intergenic 5.0%
!! ATTAAATAACTATAATAAAA+AGG + chr1_3:50555960-50555979 None:intergenic 5.0%
!!! AATAAATAATATTATTTTTC+TGG - chr1_3:50560390-50560409 Msa0123440:intron 5.0%
TCTGCAGCAAATTTCCCCCA+AGG + chr1_3:50552504-50552523 None:intergenic 50.0%
CAAGAGGAGGAAGAAGGGTT+TGG - chr1_3:50552538-50552557 Msa0123440:CDS 50.0%
! GGAGGAAGAAGGGTTTGGTT+AGG - chr1_3:50552543-50552562 Msa0123440:CDS 50.0%
GCGATGAGAGGTAGCTCAAA+AGG + chr1_3:50553657-50553676 None:intergenic 50.0%
GGTTGCTCTAGCCTAGATGT+AGG + chr1_3:50553830-50553849 None:intergenic 50.0%
CGCAGTGGGAAGAGAAGAAT+GGG - chr1_3:50554279-50554298 Msa0123440:intron 50.0%
GTTTCGTGTTCGACTCTCAC+AGG - chr1_3:50554301-50554320 Msa0123440:intron 50.0%
!!! ACCCATTTTGGTTGGTCTGG+TGG + chr1_3:50554548-50554567 None:intergenic 50.0%
! TCAGTGAAGGTGTGTCCTAG+TGG - chr1_3:50554970-50554989 Msa0123440:intron 50.0%
CTTGTTAACCAGTGCCCTCA+GGG + chr1_3:50555897-50555916 None:intergenic 50.0%
TCTTGTTAACCAGTGCCCTC+AGG + chr1_3:50555898-50555917 None:intergenic 50.0%
AACACACAACGATTCGCGCA+AGG - chr1_3:50556018-50556037 Msa0123440:intron 50.0%
CGCAAGGAATCCATAACGAG+TGG - chr1_3:50556034-50556053 Msa0123440:intron 50.0%
TGGACAAGAGGTGATGCGAA+TGG - chr1_3:50556266-50556285 Msa0123440:intron 50.0%
! CAAGATGTAGAGGATGGTGG+CGG + chr1_3:50556311-50556330 None:intergenic 50.0%
CCCTGTGTTCCAAGATGTAG+AGG + chr1_3:50556321-50556340 None:intergenic 50.0%
! AGGGATTTGGAACAGAGGGA+AGG - chr1_3:50556337-50556356 Msa0123440:intron 50.0%
! GATTTGGAACAGAGGGAAGG+CGG - chr1_3:50556340-50556359 Msa0123440:intron 50.0%
ATTAGCTGAACTTGAGGCCC+CGG + chr1_3:50558399-50558418 None:intergenic 50.0%
!! CTGGCTTTGTATCAACCGTC+AGG + chr1_3:50558437-50558456 None:intergenic 50.0%
AGACGGAGGGAGTAGCAAAT+CGG + chr1_3:50558982-50559001 None:intergenic 50.0%
TATGCTTAACCAGTGCCTCG+GGG + chr1_3:50560096-50560115 None:intergenic 50.0%
GTATGCTTAACCAGTGCCTC+GGG + chr1_3:50560097-50560116 None:intergenic 50.0%
GGTATGCTTAACCAGTGCCT+CGG + chr1_3:50560098-50560117 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG - chr1_3:50560217-50560236 Msa0123440:intron 50.0%
ATATCCTTAACCAGTGCCCC+GGG - chr1_3:50560218-50560237 Msa0123440:intron 50.0%
!! AATTAAAGGTGCCCCACTGC+AGG + chr1_3:50560459-50560478 None:intergenic 50.0%
GGAACAACTCCTATGAGGCA+TGG + chr1_3:50560581-50560600 None:intergenic 50.0%
TCAGCTGCATACTTTCCCCA+AGG + chr1_3:50560853-50560872 None:intergenic 50.0%
CAAGAGGAGGAAGAAGGGTT+TGG - chr1_3:50552538-50552557 Msa0123440:CDS 50.0%
TTCACCTGCACTTGCACTCA+AGG - chr1_3:50561059-50561078 Msa0123440:intron 50.0%
CACGAGTGGAGCCTACATCT+AGG - chr1_3:50553816-50553835 Msa0123440:intron 55.0%
GTTCTCTACTCTTTGCCCCG+TGG - chr1_3:50553944-50553963 Msa0123440:intron 55.0%
! AGGGTTTAAAGGAGGCGCAG+TGG - chr1_3:50554264-50554283 Msa0123440:intron 55.0%
! GGGTTTAAAGGAGGCGCAGT+GGG - chr1_3:50554265-50554284 Msa0123440:intron 55.0%
GCGCAGTGGGAAGAGAAGAA+TGG - chr1_3:50554278-50554297 Msa0123440:intron 55.0%
! AGCTGGGCCTCCCCAATTTT+GGG - chr1_3:50554868-50554887 Msa0123440:intron 55.0%
TTTGGGCCCCAAAATTGGGG+AGG + chr1_3:50554878-50554897 None:intergenic 55.0%
! CACGCGTGCGTTTTACCACT+AGG + chr1_3:50554988-50555007 None:intergenic 55.0%
CGGTTCAACTGCCCTTGTGA+TGG - chr1_3:50555024-50555043 Msa0123440:intron 55.0%
TGCCCTCAGGGCAATGGTTA+AGG + chr1_3:50555885-50555904 None:intergenic 55.0%
CTTGGAGCCCTGTTGCTCAT+AGG + chr1_3:50556182-50556201 None:intergenic 55.0%
CGCCACCATCCTCTACATCT+TGG - chr1_3:50556309-50556328 Msa0123440:intron 55.0%
GAACAGAGGGAAGGCGGTTT+GGG - chr1_3:50556346-50556365 Msa0123440:intron 55.0%
CTGCCCTATTCTCAGCCGTT+TGG + chr1_3:50557336-50557355 None:intergenic 55.0%
ACGGCTGAGAATAGGGCAGT+AGG - chr1_3:50557337-50557356 Msa0123440:intron 55.0%
ATGGTCACACTCACATGGGC+TGG + chr1_3:50557691-50557710 None:intergenic 55.0%
TATCCTTAACCAGTGCCCCG+GGG - chr1_3:50560219-50560238 Msa0123440:intron 55.0%
AAATGCTAACCGGTGTCCCC+GGG + chr1_3:50560238-50560257 None:intergenic 55.0%
GAAATGCTAACCGGTGTCCC+CGG + chr1_3:50560239-50560258 None:intergenic 55.0%
ACAACCTGCAGACTGCAGTG+AGG - chr1_3:50560507-50560526 Msa0123440:intron 55.0%
CAAACCTCACTGCAGTCTGC+AGG + chr1_3:50560514-50560533 None:intergenic 55.0%
GGAGGAAGAAGGGTTTGGCT+AGG - chr1_3:50560892-50560911 Msa0123440:CDS 55.0%
CTCTCCTTGAGTGCAAGTGC+AGG + chr1_3:50561066-50561085 None:intergenic 55.0%
TATGCACCAGGGCTGTCCCT+GGG - chr1_3:50554824-50554843 Msa0123440:intron 60.0%
GAGCTGTTTGCACCTCCCCA+GGG + chr1_3:50554843-50554862 None:intergenic 60.0%
AGAGCTGTTTGCACCTCCCC+AGG + chr1_3:50554844-50554863 None:intergenic 60.0%
! GAGCTGGGCCTCCCCAATTT+TGG - chr1_3:50554867-50554886 Msa0123440:intron 60.0%
! GCTGGGCCTCCCCAATTTTG+GGG - chr1_3:50554869-50554888 Msa0123440:intron 60.0%
! AACCATTGCCCTGAGGGCAC+TGG - chr1_3:50555886-50555905 Msa0123440:intron 60.0%
AACCAGTGCCCTCAGGGCAA+TGG + chr1_3:50555891-50555910 None:intergenic 60.0%
CGCTCTCTCCCCACTCGTTA+TGG + chr1_3:50556047-50556066 None:intergenic 60.0%
GGAACAGAGGGAAGGCGGTT+TGG - chr1_3:50556345-50556364 Msa0123440:intron 60.0%
ATGAAGAGAGGCTGCGCCAC+CGG - chr1_3:50558894-50558913 Msa0123440:intron 60.0%
AATGCTAACCGGTGTCCCCG+GGG + chr1_3:50560237-50560256 None:intergenic 60.0%
GTATGCACCAGGGCTGTCCC+TGG - chr1_3:50554823-50554842 Msa0123440:intron 65.0%
ATGCACCAGGGCTGTCCCTG+GGG - chr1_3:50554825-50554844 Msa0123440:intron 65.0%
! GGTGGCGGTGATGCGATGGT+GGG + chr1_3:50556296-50556315 None:intergenic 65.0%
!! TGGTGGCGGTGATGCGATGG+TGG + chr1_3:50556297-50556316 None:intergenic 65.0%
!! GGATGGTGGCGGTGATGCGA+TGG + chr1_3:50556300-50556319 None:intergenic 65.0%
TGAAGAGAGGCTGCGCCACC+GGG - chr1_3:50558895-50558914 Msa0123440:intron 65.0%
TAACCAGTGCCTCGGGGCAC+CGG + chr1_3:50560090-50560109 None:intergenic 65.0%
!! TGTCCCCGGGGCACTGGTTA+AGG + chr1_3:50560225-50560244 None:intergenic 65.0%
TCCTGCTAACCGGTGCCCCG+AGG - chr1_3:50560078-50560097 Msa0123440:intron 70.0%
TAACCGGTGCCCCGAGGCAC+TGG - chr1_3:50560084-50560103 Msa0123440:intron 70.0%
AACCAGTGCCCCGGGGACAC+CGG - chr1_3:50560226-50560245 Msa0123440:intron 70.0%
CACCAGGGCTGTCCCTGGGG+AGG - chr1_3:50554828-50554847 Msa0123440:intron 75.0%
CACCTCCCCAGGGACAGCCC+TGG + chr1_3:50554833-50554852 None:intergenic 75.0%
!! GCCTCGGGGCACCGGTTAGC+AGG + chr1_3:50560082-50560101 None:intergenic 75.0%
AACCGGTGTCCCCGGGGCAC+TGG + chr1_3:50560231-50560250 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50552489 50561251 50552489 ID=Msa0123440;Name=Msa0123440
chr1_3 mRNA 50552489 50561251 50552489 ID=Msa0123440-mRNA-1;Parent=Msa0123440;Name=Msa0123440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0|3|0|336
chr1_3 exon 50561113 50561251 50561113 ID=Msa0123440-mRNA-1:exon:15446;Parent=Msa0123440-mRNA-1
chr1_3 exon 50560839 50561070 50560839 ID=Msa0123440-mRNA-1:exon:15445;Parent=Msa0123440-mRNA-1
chr1_3 exon 50552489 50553125 50552489 ID=Msa0123440-mRNA-1:exon:15444;Parent=Msa0123440-mRNA-1
chr1_3 CDS 50561113 50561251 50561113 ID=Msa0123440-mRNA-1:cds;Parent=Msa0123440-mRNA-1
chr1_3 CDS 50560839 50561070 50560839 ID=Msa0123440-mRNA-1:cds;Parent=Msa0123440-mRNA-1
chr1_3 CDS 50552489 50553125 50552489 ID=Msa0123440-mRNA-1:cds;Parent=Msa0123440-mRNA-1
Gene Sequence

>Msa0123440

GTGAGGAAAAGACCTTGGGGGAAATTTGCTGCAGAGATCAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGTTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGGTCTTCACCTGCACTTGCACTAAAAGAGAGGCACTATGAACAAAGAAAGTTGTTATTAAAAGGTGTAAAGAATAAAGCAGGGAAACAAGATCAATCAGAGGGATCAAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTTACAATATCTGATAATCAAAGTACTAGCAGCAACGGCAACCAAGATATAGAAATGCTGCAAGGCCCTTCAGAAATTTCCTTTGAATCATTTGGTATTAATCATGATTTTCTTTCCTTTGATATGATCGATTTCTCATCGAGTTCGCAGACACCAATTACCGAAGACGAGCCAAAACAATTGATGTTGGAGTCATCATCATCTGAAGCAAAAGAAGTATTGCAGAATAATACTAAGATGGATCAAAAGTCATCATATATAGGTGTGAGAAAAAGACCTTGGGGAAAGTATGCAGCTGAGATCAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGCTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAGAAGGGTCTTCACCTGCACTTGCACTCAAGGAGAGACACTGTGAACAAAGAAAGATGTCATCAAAAGGTGTAAACAATAATAAAGCAGGGAAACAAGATCAATCAGAAGGATCAAGTGTTTTGGTGTTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTCTAACAATATCTGATAATCAAAGTACAAGCAGCAACAGC
Protein sequence

>Msa0123440

VRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRESLQEIQYDCRKGSSPALALKERHYEQRKLLLKGVKNKAGKQDQSEGSSVLVLEDLGVEYLEQLLTISDNQSTSSNGNQDIEMLQGPSEISFESFGINHDFLSFDMIDFSSSSQTPITEDEPKQLMLESSSSEAKEVLQNNTKMDQKSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFSVQRVKESLQEIQYDCREGSSPALALKERHCEQRKMSSKGVNNNKAGKQDQSEGSSVLVLEDLGVEYLEQLLTISDNQSTSSNS