AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027670 MtrunA17_Chr1g0184011 90.541 222 21 0 129 350 1 222 1.01e-150 423
Msa0027670 MtrunA17_Chr1g0184011 81.295 139 11 2 1 124 87 225 9.69e-73 225
Msa0027670 MtrunA17_Chr1g0184031 91.071 224 19 1 129 352 1 223 3.37e-148 417
Msa0027670 MtrunA17_Chr1g0184031 86.765 136 4 1 1 122 87 222 2.95e-78 239
Msa0027670 MtrunA17_Chr1g0183981 77.273 220 35 5 136 350 4 213 1.46e-113 328
Msa0027670 MtrunA17_Chr1g0183981 83.824 136 7 2 1 121 78 213 1.75e-74 229
Msa0027670 MtrunA17_Chr1g0184061 75.115 217 46 6 137 349 5 217 1.64e-103 303
Msa0027670 MtrunA17_Chr1g0184061 72.535 142 21 3 1 124 80 221 3.40e-59 190
Msa0027670 MtrunA17_Chr1g0184071 66.111 180 39 5 131 306 2 163 2.55e-72 222
Msa0027670 MtrunA17_Chr1g0184071 82.609 92 2 1 1 78 72 163 1.98e-46 155
Msa0027670 MtrunA17_Chr1g0184041 91.667 84 7 0 259 342 1 84 4.32e-47 158
Msa0027670 MtrunA17_Chr1g0184041 91.429 70 5 1 45 113 15 84 4.16e-36 129
Msa0027670 MtrunA17_Chr4g0026881 41.315 213 90 6 162 343 30 238 2.71e-42 147
Msa0027670 MtrunA17_Chr4g0026881 43.885 139 53 4 1 114 100 238 2.75e-30 115
Msa0027670 MtrunA17_Chr1g0186741 47.486 179 81 3 178 344 29 206 6.61e-41 142
Msa0027670 MtrunA17_Chr1g0186741 53.435 131 45 2 1 115 76 206 7.61e-28 108
Msa0027670 MtrunA17_Chr4g0026931 49.306 144 59 4 214 343 133 276 6.74e-39 139
Msa0027670 MtrunA17_Chr4g0026931 44.056 143 51 5 1 114 134 276 7.61e-29 112
Msa0027670 MtrunA17_Chr1g0183931 51.205 166 69 3 193 346 78 243 3.21e-38 137
Msa0027670 MtrunA17_Chr1g0183931 50.704 142 43 4 1 117 104 243 1.39e-25 103
Msa0027670 MtrunA17_Chr1g0167781 48.370 184 76 4 178 347 38 216 3.32e-37 133
Msa0027670 MtrunA17_Chr1g0167781 50.735 136 45 4 1 118 85 216 7.00e-23 95.1
Msa0027670 MtrunA17_Chr7g0261201 39.834 241 107 7 135 343 5 239 1.34e-36 132
Msa0027670 MtrunA17_Chr7g0261201 48.201 139 47 5 1 114 101 239 1.87e-23 97.4
Msa0027670 MtrunA17_Chr7g0261171 51.220 164 69 3 184 340 57 216 5.85e-36 130
Msa0027670 MtrunA17_Chr7g0261171 52.985 134 35 5 1 111 88 216 1.03e-23 97.8
Msa0027670 MtrunA17_Chr2g0283171 59.494 79 32 0 204 282 55 133 2.42e-28 108
Msa0027670 MtrunA17_Chr2g0283171 72.917 48 13 0 1 48 66 113 1.99e-19 84.0
Msa0027670 MtrunA17_Chr4g0046161 46.847 111 48 2 169 268 3 113 4.36e-28 106
Msa0027670 MtrunA17_Chr4g0046161 69.565 46 14 0 1 46 60 105 1.77e-18 80.5
Msa0027670 MtrunA17_Chr2g0283181 37.791 172 91 4 185 341 119 289 2.13e-26 106
Msa0027670 MtrunA17_Chr2g0283181 36.691 139 60 5 1 112 152 289 1.28e-17 82.0
Msa0027670 MtrunA17_Chr1g0170531 49.057 106 45 2 179 284 65 161 3.95e-25 101
Msa0027670 MtrunA17_Chr1g0170531 72.917 48 13 0 1 48 92 139 1.16e-16 78.2
Msa0027670 MtrunA17_Chr8g0335311 73.684 57 15 0 212 268 96 152 4.17e-24 97.8
Msa0027670 MtrunA17_Chr8g0335311 68.519 54 17 0 1 54 99 152 7.13e-20 86.3
Msa0027670 MtrunA17_Chr4g0055761 48.148 108 48 3 172 271 97 204 8.57e-24 99.0
Msa0027670 MtrunA17_Chr4g0055761 63.333 60 22 0 1 60 148 207 5.34e-19 85.5
Msa0027670 MtrunA17_Chr7g0261101 60.000 75 29 1 195 269 4 77 1.06e-23 95.1
Msa0027670 MtrunA17_Chr7g0261101 56.338 71 19 1 1 71 23 81 9.73e-18 79.0
Msa0027670 MtrunA17_Chr7g0261151 64.062 64 23 0 205 268 13 76 1.49e-23 94.7
Msa0027670 MtrunA17_Chr7g0261151 56.338 71 19 1 1 71 23 81 1.82e-18 80.9
Msa0027670 MtrunA17_Chr7g0221501 52.874 87 38 2 188 274 29 112 1.69e-23 95.9
Msa0027670 MtrunA17_Chr7g0221501 59.649 57 22 1 1 57 54 109 1.22e-16 77.0
Msa0027670 MtrunA17_Chr1g0186731 62.500 64 24 0 205 268 14 77 4.14e-23 93.6
Msa0027670 MtrunA17_Chr1g0186731 61.111 54 21 0 1 54 24 77 1.52e-17 78.6
Msa0027670 MtrunA17_Chr4g0055781 55.405 74 33 0 198 271 88 161 5.10e-23 96.3
Msa0027670 MtrunA17_Chr4g0055781 68.750 48 15 0 1 48 105 152 1.88e-15 75.1
Msa0027670 MtrunA17_Chr8g0335331 60.870 69 27 0 200 268 113 181 8.17e-23 94.4
Msa0027670 MtrunA17_Chr8g0335331 62.963 54 20 0 1 54 128 181 6.08e-18 81.3
Msa0027670 MtrunA17_Chr1g0170471 45.082 122 63 2 153 271 22 142 1.06e-22 93.6
Msa0027670 MtrunA17_Chr1g0170471 76.190 42 10 0 5 46 90 131 2.14e-15 73.2
Msa0027670 MtrunA17_Chr1g0184081 71.930 57 16 0 212 268 21 77 1.07e-22 92.8
Msa0027670 MtrunA17_Chr1g0184081 73.469 49 13 0 1 49 24 72 2.70e-18 80.5
Msa0027670 MtrunA17_Chr1g0186671 70.175 57 17 0 212 268 19 75 1.35e-22 92.0
Msa0027670 MtrunA17_Chr1g0186671 64.815 54 19 0 1 54 22 75 1.06e-18 81.6
Msa0027670 MtrunA17_Chr7g0221471 52.874 87 38 2 188 274 29 112 1.77e-22 92.8
Msa0027670 MtrunA17_Chr7g0221471 57.895 57 23 1 1 57 54 109 7.62e-16 74.7
Msa0027670 MtrunA17_Chr7g0250721 49.541 109 42 4 163 268 19 117 2.52e-22 93.6
Msa0027670 MtrunA17_Chr7g0250721 58.333 60 25 0 1 60 64 123 9.30e-17 78.2
Msa0027670 MtrunA17_Chr1g0196871 71.667 60 17 0 212 271 16 75 2.77e-22 90.1
Msa0027670 MtrunA17_Chr1g0196871 51.948 77 34 1 1 74 19 95 2.26e-16 73.9
Msa0027670 MtrunA17_Chr4g0055801 62.500 64 24 0 208 271 150 213 7.66e-22 94.4
Msa0027670 MtrunA17_Chr4g0055801 70.833 48 14 0 1 48 157 204 1.39e-15 76.6
Msa0027670 MtrunA17_Chr7g0250731 68.421 57 18 0 212 268 61 117 2.20e-21 90.9
Msa0027670 MtrunA17_Chr7g0250731 53.623 69 32 0 1 69 64 132 4.06e-17 79.0
Msa0027670 MtrunA17_Chr7g0250711 64.912 57 20 0 212 268 60 116 3.00e-20 87.8
Msa0027670 MtrunA17_Chr7g0250711 67.391 46 15 0 1 46 63 108 8.06e-16 75.5
Msa0027670 MtrunA17_Chr1g0186681 65.574 61 20 1 212 271 19 79 3.84e-20 85.1
Msa0027670 MtrunA17_Chr1g0186681 61.818 55 20 1 1 54 22 76 4.02e-16 74.3
Msa0027670 MtrunA17_Chr8g0335321 50.602 83 30 1 212 283 96 178 3.87e-20 87.4
Msa0027670 MtrunA17_Chr8g0335321 53.333 60 28 0 1 60 99 158 5.26e-16 75.9
Msa0027670 MtrunA17_Chr2g0297331 59.091 66 27 0 203 268 5 70 5.39e-20 84.7
Msa0027670 MtrunA17_Chr2g0297331 55.556 54 24 0 1 54 17 70 6.25e-14 68.2
Msa0027670 MtrunA17_Chr4g0066931 60.938 64 24 1 205 268 46 108 1.93e-19 88.2
Msa0027670 MtrunA17_Chr4g0066931 67.391 46 14 1 1 46 56 100 4.79e-14 72.4
Msa0027670 MtrunA17_Chr1g0195151 41.667 120 62 2 150 269 22 133 3.70e-19 86.7
Msa0027670 MtrunA17_Chr1g0195151 65.217 46 15 1 1 46 80 124 3.27e-12 66.6
Msa0027670 MtrunA17_Chr8g0383591 62.319 69 23 2 202 268 133 200 5.94e-19 86.3
Msa0027670 MtrunA17_Chr8g0383591 57.407 54 22 1 1 54 148 200 3.59e-13 69.3
Msa0027670 MtrunA17_Chr4g0044871 60.000 70 25 2 212 281 96 162 7.75e-19 84.3
Msa0027670 MtrunA17_Chr4g0044871 44.156 77 35 2 1 77 99 167 1.14e-12 67.0
Msa0027670 MtrunA17_Chr4g0044881 46.667 105 47 3 208 312 110 205 8.44e-19 84.3
Msa0027670 MtrunA17_Chr4g0044881 40.000 95 50 2 1 89 117 210 1.68e-12 66.6
Msa0027670 MtrunA17_Chr2g0282621 57.746 71 29 1 207 277 10 79 1.48e-18 82.0
Msa0027670 MtrunA17_Chr2g0282621 69.565 46 13 1 1 46 18 62 1.37e-13 68.2
Msa0027670 MtrunA17_Chr4g0044901 62.319 69 23 2 212 280 96 161 1.97e-18 83.2
Msa0027670 MtrunA17_Chr4g0044901 34.959 123 53 3 1 123 99 194 3.39e-12 65.5
Msa0027670 MtrunA17_Chr5g0396911 61.290 62 23 1 212 273 112 172 2.36e-18 84.3
Msa0027670 MtrunA17_Chr5g0396911 67.391 46 14 1 1 46 115 159 1.22e-13 70.9
Msa0027670 MtrunA17_Chr8g0367911 62.500 64 23 1 212 275 44 106 3.37e-18 83.6
Msa0027670 MtrunA17_Chr8g0367911 68.750 48 14 1 1 48 47 93 5.46e-14 71.6
Msa0027670 MtrunA17_Chr1g0183961 70.175 57 17 0 212 268 27 83 5.69e-18 79.7
Msa0027670 MtrunA17_Chr1g0183961 73.913 46 12 0 1 46 30 75 1.33e-12 64.7
Msa0027670 MtrunA17_Chr2g0286161 56.250 64 27 1 205 268 43 105 1.02e-17 82.4
Msa0027670 MtrunA17_Chr2g0286161 60.417 48 18 1 1 48 53 99 1.54e-12 67.4
Msa0027670 MtrunA17_Chr8g0344961 54.217 83 30 2 193 268 98 179 1.13e-17 83.2
Msa0027670 MtrunA17_Chr8g0344961 55.556 54 23 1 1 54 127 179 1.08e-11 65.5
Msa0027670 MtrunA17_Chr2g0316931 64.407 59 20 1 212 270 31 88 1.19e-17 80.5
Msa0027670 MtrunA17_Chr2g0316931 57.143 56 23 1 1 56 34 88 5.62e-13 67.4
Msa0027670 MtrunA17_Chr3g0099871 55.714 70 30 1 202 271 17 85 1.28e-17 80.9
Msa0027670 MtrunA17_Chr3g0099871 69.565 46 13 1 1 46 30 74 5.94e-13 67.4
Msa0027670 MtrunA17_Chr7g0252381 66.667 57 18 1 212 268 42 97 1.51e-17 81.6
Msa0027670 MtrunA17_Chr7g0252381 56.250 64 24 2 1 61 45 107 1.24e-13 70.5
Msa0027670 MtrunA17_Chr5g0438801 51.948 77 35 2 194 270 34 108 1.63e-17 81.6
Msa0027670 MtrunA17_Chr5g0438801 68.750 48 14 1 1 48 54 100 8.24e-14 70.9
Msa0027670 MtrunA17_Chr5g0432821 51.316 76 35 2 208 283 120 193 1.64e-17 81.6
Msa0027670 MtrunA17_Chr5g0432821 39.604 101 51 4 1 97 127 221 3.20e-11 63.2
Msa0027670 MtrunA17_Chr7g0261181 65.000 60 21 0 209 268 10 69 1.68e-17 77.8
Msa0027670 MtrunA17_Chr7g0261181 71.739 46 13 0 1 46 16 61 3.31e-12 63.2
Msa0027670 MtrunA17_Chr4g0044911 60.294 68 24 2 212 279 96 160 2.23e-17 80.5
Msa0027670 MtrunA17_Chr4g0044911 57.407 54 22 1 1 54 99 151 2.21e-12 66.2
Msa0027670 MtrunA17_Chr3g0126321 54.545 66 29 1 212 277 113 177 2.41e-17 82.0
Msa0027670 MtrunA17_Chr3g0126321 63.043 46 16 1 1 46 116 160 4.76e-12 66.2
Msa0027670 MtrunA17_Chr5g0438831 43.617 94 45 2 184 270 11 103 2.67e-17 80.9
Msa0027670 MtrunA17_Chr5g0438831 68.750 48 14 1 1 48 49 95 6.50e-14 71.2
Msa0027670 MtrunA17_Chr2g0295421 60.000 65 25 1 205 269 89 152 2.68e-17 80.5
Msa0027670 MtrunA17_Chr2g0295421 65.217 46 15 1 1 46 99 143 2.13e-11 63.5
Msa0027670 MtrunA17_Chr2g0324131 66.667 57 18 1 212 268 218 273 3.62e-17 82.0
Msa0027670 MtrunA17_Chr2g0324131 65.217 46 15 1 1 46 221 265 9.70e-12 65.9
Msa0027670 MtrunA17_Chr1g0158971 62.712 59 19 2 212 269 115 171 8.04e-17 80.5
Msa0027670 MtrunA17_Chr2g0282651 54.545 77 33 2 194 269 51 126 8.34e-17 79.0
Msa0027670 MtrunA17_Chr2g0282651 67.391 46 14 1 1 46 73 117 2.23e-12 66.2
Msa0027670 MtrunA17_Chr2g0334031 52.632 76 35 1 193 268 98 172 1.02e-16 80.5
Msa0027670 MtrunA17_Chr2g0334031 55.556 54 23 1 1 54 120 172 1.04e-11 65.5
Msa0027670 MtrunA17_Chr5g0412641 48.958 96 39 3 177 268 12 101 1.54e-16 79.7
Msa0027670 MtrunA17_Chr5g0412641 67.391 46 14 1 1 46 49 93 1.61e-12 67.8
Msa0027670 MtrunA17_Chr4g0062551 52.778 72 32 2 197 268 39 108 2.10e-16 75.1
Msa0027670 MtrunA17_Chr8g0375031 57.812 64 26 1 205 268 118 180 3.55e-16 76.6
Msa0027670 MtrunA17_Chr8g0375031 56.364 55 23 1 1 55 128 181 1.34e-12 66.6
Msa0027670 MtrunA17_Chr8g0387801 59.649 57 22 1 212 268 107 162 6.39e-16 77.4
Msa0027670 MtrunA17_Chr6g0461271 37.589 141 61 6 179 319 3 116 7.58e-16 77.4
Msa0027670 MtrunA17_Chr6g0461271 45.714 70 37 1 1 70 36 104 6.94e-11 62.8
Msa0027670 MtrunA17_Chr1g0196781 61.404 57 21 1 212 268 152 207 9.27e-16 77.0
Msa0027670 MtrunA17_Chr1g0196781 53.704 54 24 1 1 54 155 207 7.73e-12 65.5
Msa0027670 MtrunA17_Chr4g0062161 52.778 72 32 2 197 268 39 108 9.54e-16 75.1
Msa0027670 MtrunA17_Chr8g0378811 54.688 64 28 1 206 269 49 111 1.00e-15 76.3
Msa0027670 MtrunA17_Chr3g0115631 61.404 57 21 1 212 268 150 205 1.44e-15 76.6
Msa0027670 MtrunA17_Chr3g0115631 51.852 54 25 1 1 54 153 205 3.63e-11 63.5
Msa0027670 MtrunA17_Chr4g0023411 56.452 62 26 1 207 268 60 120 2.46e-15 73.9
Msa0027670 MtrunA17_Chr4g0023411 53.704 54 24 1 1 54 68 120 4.38e-11 61.6
Msa0027670 MtrunA17_Chr4g0063751 51.429 70 33 1 206 275 1 69 2.68e-15 73.9
Msa0027670 MtrunA17_Chr7g0217991 48.684 76 36 2 195 268 23 97 2.72e-15 76.6
Msa0027670 MtrunA17_Chr5g0396171 48.611 72 34 2 210 279 22 92 2.99e-15 70.9
Msa0027670 MtrunA17_Chr5g0425561 61.404 57 21 1 212 268 173 228 3.13e-15 76.3
Msa0027670 MtrunA17_Chr5g0425561 50.000 58 28 1 1 58 176 232 2.84e-11 64.3
Msa0027670 MtrunA17_Chr1g0200931 45.783 83 41 3 199 278 8 89 3.97e-15 71.6
Msa0027670 MtrunA17_Chr6g0453661 41.584 101 44 3 212 311 38 124 4.03e-15 75.9
Msa0027670 MtrunA17_Chr6g0453661 39.394 99 57 3 1 97 41 138 7.89e-11 62.8
Msa0027670 MtrunA17_Chr8g0382491 50.725 69 33 1 212 280 113 180 4.13e-15 74.7
Msa0027670 MtrunA17_Chr2g0323171 54.839 62 27 1 207 268 60 120 8.76e-15 72.0
Msa0027670 MtrunA17_Chr5g0437671 53.521 71 32 1 209 279 82 151 9.43e-15 74.7
Msa0027670 MtrunA17_Chr7g0253424 50.000 66 32 1 203 268 30 94 2.03e-14 72.4
Msa0027670 MtrunA17_Chr4g0017851 46.429 84 42 2 210 291 116 198 3.97e-14 72.0
Msa0027670 MtrunA17_Chr2g0333011 50.769 65 31 1 206 270 1 64 4.49e-14 69.7
Msa0027670 MtrunA17_Chr8g0340311 50.000 62 30 1 208 269 43 103 4.76e-14 70.1
Msa0027670 MtrunA17_Chr2g0331231 44.928 69 37 1 200 268 29 96 5.65e-14 70.1
Msa0027670 MtrunA17_Chr8g0390091 43.011 93 47 3 182 269 2 93 5.82e-14 70.5
Msa0027670 MtrunA17_Chr4g0003421 52.308 65 30 1 206 270 34 97 1.34e-13 69.7
Msa0027670 MtrunA17_Chr8g0350701 52.542 59 27 1 212 270 27 84 1.63e-13 70.5
Msa0027670 MtrunA17_Chr2g0301191 50.000 70 34 1 199 268 6 74 1.66e-13 68.9
Msa0027670 MtrunA17_Chr7g0243431 53.125 64 24 1 211 268 77 140 2.19e-13 70.9
Msa0027670 MtrunA17_Chr8g0334801 43.902 82 39 3 198 277 42 118 2.35e-13 68.2
Msa0027670 MtrunA17_Chr1g0189941 52.542 59 27 1 211 269 23 80 2.60e-13 67.4
Msa0027670 MtrunA17_Chr4g0042761 53.333 60 27 1 209 268 45 103 3.37e-13 69.7
Msa0027670 MtrunA17_Chr7g0232261 46.667 75 36 2 194 268 46 116 5.66e-13 67.8
Msa0027670 MtrunA17_Chr3g0140161 52.632 57 26 1 212 268 43 98 1.28e-12 65.9
Msa0027670 MtrunA17_Chr6g0486701 52.632 57 26 1 212 268 44 99 1.35e-12 66.2
Msa0027670 MtrunA17_Chr2g0301171 54.237 59 26 1 210 268 17 74 1.42e-12 65.9
Msa0027670 MtrunA17_Chr8g0346741 51.724 58 27 1 212 269 39 95 2.65e-12 64.7
Msa0027670 MtrunA17_Chr3g0134161 44.118 68 37 1 201 268 34 100 2.68e-12 64.7
Msa0027670 MtrunA17_Chr1g0150661 38.750 80 46 2 189 268 14 90 2.78e-12 65.5
Msa0027670 MtrunA17_Chr7g0257911 52.632 57 26 1 212 268 31 86 3.15e-12 66.2
Msa0027670 MtrunA17_Chr5g0437371 53.226 62 28 1 207 268 61 121 3.48e-12 66.6
Msa0027670 MtrunA17_Chr3g0137174 54.386 57 25 1 212 268 8 63 4.99e-12 64.3
Msa0027670 MtrunA17_Chr5g0438841 55.000 60 26 1 212 271 16 74 5.95e-12 63.5
Msa0027670 MtrunA17_Chr7g0265851 52.632 57 26 1 212 268 24 79 7.04e-12 63.9
Msa0027670 MtrunA17_Chr7g0275841 50.000 58 28 1 212 269 28 84 9.11e-12 63.2
Msa0027670 MtrunA17_Chr1g0150631 35.043 117 58 3 201 301 28 142 9.74e-12 64.3
Msa0027670 MtrunA17_Chr2g0301181 52.542 59 27 1 210 268 17 74 1.67e-11 63.5
Msa0027670 MtrunA17_Chr1g0150691 46.970 66 29 2 203 268 18 77 1.86e-11 63.2
Msa0027670 MtrunA17_Chr4g0002631 54.386 57 25 1 212 268 8 63 2.19e-11 62.4
Msa0027670 MtrunA17_Chr4g0055951 50.000 58 28 1 211 268 73 129 2.19e-11 63.5
Msa0027670 MtrunA17_Chr5g0399441 43.478 69 38 1 201 269 17 84 2.76e-11 62.0
Msa0027670 MtrunA17_Chr3g0136551 47.059 68 33 2 201 268 56 120 3.21e-11 63.2
Msa0027670 MtrunA17_Chr3g0129421 62.903 62 22 1 207 268 165 225 3.37e-11 63.9
Msa0027670 MtrunA17_Chr1g0150671 49.123 57 28 1 212 268 46 101 3.44e-11 63.2
Msa0027670 MtrunA17_Chr1g0153151 49.123 57 28 1 212 268 44 99 4.19e-11 61.2
Msa0027670 MtrunA17_Chr1g0203861 50.000 58 28 1 212 269 44 100 4.54e-11 61.6
Msa0027670 MtrunA17_Chr5g0401871 46.032 63 33 1 206 268 19 80 7.30e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027670 AT3G23240.1 57.746 142 51 2 211 348 81 217 1.02e-49 166
Msa0027670 AT3G23240.1 53.383 133 48 1 1 119 85 217 5.09e-38 135
Msa0027670 AT2G31230.1 46.012 163 63 3 206 343 80 242 8.22e-38 135
Msa0027670 AT2G31230.1 42.857 154 48 4 1 114 89 242 1.62e-26 105
Msa0027670 AT1G06160.1 43.750 160 60 2 211 340 81 240 6.18e-28 109
Msa0027670 AT1G06160.1 38.462 156 51 2 1 111 85 240 3.43e-18 83.2
Msa0027670 AT5G47220.1 46.154 117 60 2 157 271 61 176 1.35e-25 103
Msa0027670 AT5G47220.1 65.000 60 21 0 1 60 120 179 6.65e-19 85.1
Msa0027670 AT5G43410.1 70.492 61 18 0 208 268 11 71 9.22e-25 98.2
Msa0027670 AT5G43410.1 76.087 46 11 0 1 46 18 63 1.31e-18 81.3
Msa0027670 AT5G51190.1 46.364 110 55 2 162 271 26 131 9.94e-24 97.8
Msa0027670 AT5G51190.1 55.932 59 26 0 1 59 75 133 8.17e-16 75.9
Msa0027670 AT4G17500.1 70.000 60 18 0 212 271 148 207 1.31e-23 98.6
Msa0027670 AT4G17500.1 65.000 60 21 0 1 60 151 210 3.77e-19 86.3
Msa0027670 AT3G23230.1 61.905 63 24 0 207 269 15 77 2.46e-23 94.4
Msa0027670 AT3G23230.1 62.963 54 20 0 1 54 23 76 8.73e-18 79.3
Msa0027670 AT5G47230.1 61.538 65 25 0 207 271 151 215 2.03e-22 96.3
Msa0027670 AT5G47230.1 59.322 59 24 0 1 59 159 217 5.00e-16 78.2
Msa0027670 AT4G17490.1 61.538 65 25 0 207 271 132 196 1.06e-21 94.0
Msa0027670 AT4G17490.1 70.833 48 14 0 1 48 140 187 2.58e-15 75.9
Msa0027670 AT2G44840.1 66.667 57 19 0 212 268 92 148 1.69e-21 92.0
Msa0027670 AT2G44840.1 41.121 107 56 2 1 102 95 199 7.99e-18 81.6
Msa0027670 AT5G61600.1 64.407 59 21 0 212 270 88 146 2.09e-21 92.0
Msa0027670 AT5G61600.1 54.237 59 25 1 1 57 91 149 4.79e-15 74.3
Msa0027670 AT2G33710.1 61.429 70 25 2 199 268 58 125 2.99e-21 91.3
Msa0027670 AT2G33710.1 71.739 46 12 1 1 46 73 117 1.19e-15 75.5
Msa0027670 AT2G33710.2 61.429 70 25 2 199 268 58 125 3.47e-21 91.3
Msa0027670 AT2G33710.2 71.739 46 12 1 1 46 73 117 1.62e-15 75.5
Msa0027670 AT2G47520.1 49.495 99 46 2 180 275 15 112 3.87e-21 89.4
Msa0027670 AT2G47520.1 63.043 46 16 1 1 46 53 97 1.44e-12 65.9
Msa0027670 AT4G18450.1 58.108 74 27 2 212 284 110 180 5.98e-21 92.0
Msa0027670 AT4G18450.1 76.087 46 11 0 1 46 113 158 2.02e-17 82.0
Msa0027670 AT5G07580.1 66.102 59 20 0 212 270 110 168 7.33e-21 89.7
Msa0027670 AT5G07580.1 52.113 71 32 1 1 69 113 183 1.98e-15 74.7
Msa0027670 AT4G27950.1 58.824 68 27 1 212 279 118 184 2.75e-20 90.9
Msa0027670 AT4G27950.1 63.043 46 16 1 1 46 121 165 1.71e-12 68.2
Msa0027670 AT4G11140.1 60.294 68 26 1 212 279 87 153 5.29e-20 89.4
Msa0027670 AT4G11140.1 59.259 54 21 1 1 54 90 142 1.62e-13 70.5
Msa0027670 AT3G16770.1 43.925 107 50 3 162 268 38 134 6.49e-20 88.2
Msa0027670 AT3G16770.1 69.565 46 13 1 1 46 82 126 1.63e-13 70.1
Msa0027670 AT5G13910.1 68.421 57 17 1 212 268 20 75 4.23e-19 85.1
Msa0027670 AT5G13910.1 71.739 46 12 1 1 46 23 67 2.31e-14 71.6
Msa0027670 AT5G13330.1 54.054 74 32 2 201 274 28 99 5.43e-19 84.7
Msa0027670 AT5G13330.1 54.386 57 25 1 1 57 42 97 1.09e-13 69.7
Msa0027670 AT5G18560.1 60.000 65 25 1 204 268 47 110 7.47e-19 86.7
Msa0027670 AT5G18560.1 69.565 46 13 1 1 46 58 102 3.22e-14 73.2
Msa0027670 AT3G23220.1 77.193 57 13 0 212 268 14 70 2.00e-18 81.3
Msa0027670 AT3G23220.1 78.261 46 10 0 1 46 17 62 1.23e-12 65.1
Msa0027670 AT3G20310.1 55.263 76 32 2 208 282 23 97 6.14e-18 82.4
Msa0027670 AT3G20310.1 55.556 72 28 3 1 70 30 99 4.61e-14 71.6
Msa0027670 AT1G28160.1 66.667 57 18 1 212 268 39 94 6.50e-18 82.4
Msa0027670 AT1G28160.1 67.391 46 14 1 1 46 42 86 5.34e-13 68.6
Msa0027670 AT5G61890.1 58.209 67 26 2 208 274 86 150 7.92e-18 82.4
Msa0027670 AT5G61890.1 56.140 57 24 1 1 57 93 148 1.54e-13 70.1
Msa0027670 AT1G04370.1 70.492 61 18 0 208 268 16 76 1.18e-17 79.0
Msa0027670 AT1G04370.1 76.087 46 11 0 1 46 23 68 1.21e-11 62.0
Msa0027670 AT1G22190.1 55.714 70 30 1 212 281 83 151 1.34e-17 82.0
Msa0027670 AT1G22190.1 53.704 54 24 1 1 54 86 138 8.94e-12 65.1
Msa0027670 AT5G44210.1 58.209 67 27 1 204 270 25 90 1.64e-17 80.5
Msa0027670 AT5G44210.1 59.259 54 21 1 1 54 36 88 1.71e-12 66.2
Msa0027670 AT5G53290.1 57.143 63 26 1 208 270 121 182 1.85e-17 82.8
Msa0027670 AT5G53290.1 63.043 46 16 1 1 46 128 172 3.37e-12 67.4
Msa0027670 AT1G36060.1 60.317 63 24 1 212 274 143 204 2.98e-17 81.6
Msa0027670 AT1G36060.1 51.515 66 28 2 1 63 146 210 3.66e-12 67.0
Msa0027670 AT1G72360.1 59.375 64 25 1 205 268 18 80 4.32e-17 79.3
Msa0027670 AT1G72360.1 51.852 54 25 1 1 54 28 80 2.40e-11 63.2
Msa0027670 AT1G28360.1 60.000 65 25 1 204 268 4 67 4.34e-17 79.0
Msa0027670 AT1G28360.1 67.391 46 14 1 1 46 15 59 6.24e-13 67.0
Msa0027670 AT1G12890.1 39.496 119 63 3 208 320 17 132 4.78e-17 79.3
Msa0027670 AT1G12890.1 28.155 206 120 6 1 188 24 219 8.82e-13 67.4
Msa0027670 AT1G50640.1 52.113 71 33 1 212 282 28 97 5.88e-17 79.3
Msa0027670 AT1G50640.1 71.739 46 12 1 1 46 31 75 3.05e-13 68.9
Msa0027670 AT3G15210.1 64.407 59 20 1 212 270 25 82 5.97e-17 79.3
Msa0027670 AT3G15210.1 67.391 46 14 1 1 46 28 72 2.01e-12 66.2
Msa0027670 AT1G72360.3 51.948 77 36 1 192 268 54 129 6.80e-17 79.7
Msa0027670 AT4G23750.2 48.101 79 40 1 192 270 102 179 7.19e-17 80.9
Msa0027670 AT4G23750.1 48.101 79 40 1 192 270 102 179 7.19e-17 80.9
Msa0027670 AT2G22200.1 61.667 60 22 1 209 268 68 126 9.25e-17 79.3
Msa0027670 AT2G22200.1 53.704 54 24 1 1 54 74 126 4.62e-12 65.9
Msa0027670 AT1G72360.2 46.667 90 45 2 179 268 45 131 1.05e-16 79.3
Msa0027670 AT4G28140.1 59.091 66 25 2 212 276 143 207 1.63e-16 79.3
Msa0027670 AT1G03800.1 57.627 59 24 1 212 270 53 110 1.72e-16 78.6
Msa0027670 AT1G03800.1 58.333 48 19 1 1 48 56 102 9.98e-12 64.7
Msa0027670 AT3G61630.1 50.000 70 34 1 212 281 105 173 1.73e-16 79.7
Msa0027670 AT3G61630.1 46.269 67 35 1 1 67 108 173 2.23e-12 67.4
Msa0027670 AT1G28370.1 58.065 62 25 1 212 273 20 80 2.28e-16 76.3
Msa0027670 AT1G28370.1 53.571 56 25 1 1 56 23 77 2.68e-13 67.8
Msa0027670 AT1G28370.2 58.065 62 25 1 212 273 58 118 2.40e-16 77.0
Msa0027670 AT1G28370.2 53.571 56 25 1 1 56 61 115 3.17e-13 68.2
Msa0027670 AT1G78080.1 47.253 91 44 3 184 272 123 211 2.44e-16 79.3
Msa0027670 AT1G78080.1 53.704 54 24 1 1 54 155 207 1.46e-11 65.1
Msa0027670 AT1G24590.1 66.667 57 18 1 212 268 58 113 3.06e-16 78.6
Msa0027670 AT1G24590.1 67.391 46 14 1 1 46 61 105 1.99e-12 67.4
Msa0027670 AT1G22985.1 55.882 68 27 2 203 268 67 133 4.82e-16 75.1
Msa0027670 AT1G22985.1 63.830 47 15 1 1 45 78 124 5.94e-12 63.5
Msa0027670 AT5G65130.1 60.345 58 22 1 212 269 111 167 6.42e-16 77.4
Msa0027670 AT5G65130.2 60.345 58 22 1 212 269 113 169 6.92e-16 77.4
Msa0027670 AT1G12980.1 63.793 58 20 1 212 269 57 113 7.73e-16 77.8
Msa0027670 AT1G12980.1 65.217 46 15 1 1 46 60 104 1.62e-11 65.1
Msa0027670 AT2G46310.1 59.649 57 22 1 212 268 99 154 1.01e-15 77.0
Msa0027670 AT2G46310.1 60.870 46 17 1 1 46 102 146 2.98e-11 63.9
Msa0027670 AT4G13620.1 52.000 75 32 2 194 268 217 287 1.06e-15 78.2
Msa0027670 AT4G31060.1 51.471 68 31 2 212 279 27 92 1.63e-15 74.3
Msa0027670 AT2G20880.1 61.404 57 21 1 212 268 187 242 2.75e-15 76.3
Msa0027670 AT5G61590.1 55.714 70 31 0 201 270 96 165 3.56e-15 73.9
Msa0027670 AT5G19790.1 55.738 61 26 1 209 269 19 78 4.27e-15 74.7
Msa0027670 AT1G75490.1 41.026 117 52 5 183 291 5 112 4.99e-15 73.6
Msa0027670 AT4G39780.1 55.556 63 27 1 206 268 87 148 5.10e-15 74.7
Msa0027670 AT5G64750.1 58.462 65 24 2 219 281 192 255 8.39e-15 75.5
Msa0027670 AT1G01250.1 42.268 97 50 3 175 269 9 101 2.70e-14 71.2
Msa0027670 AT1G15360.1 52.308 65 30 1 206 270 1 64 3.01e-14 71.2
Msa0027670 AT1G15360.2 52.308 65 30 1 206 270 1 64 3.01e-14 71.2
Msa0027670 AT1G71130.1 53.968 63 25 2 212 270 79 141 3.66e-14 70.1
Msa0027670 AT5G21960.1 53.968 63 28 1 206 268 1 62 5.63e-14 70.9
Msa0027670 AT5G50080.2 50.962 104 33 4 165 268 56 141 6.29e-14 70.9
Msa0027670 AT5G50080.1 50.962 104 33 4 165 268 47 132 7.51e-14 70.5
Msa0027670 AT5G25390.2 53.846 65 29 1 206 270 1 64 1.03e-13 69.3
Msa0027670 AT4G32800.1 48.684 76 34 2 193 268 4 74 1.21e-13 69.7
Msa0027670 AT5G05410.2 56.667 60 25 1 209 268 76 134 1.31e-13 70.9
Msa0027670 AT5G25810.1 46.512 86 37 2 191 268 7 91 1.59e-13 69.3
Msa0027670 AT1G71450.1 55.932 59 25 1 210 268 22 79 1.62e-13 68.6
Msa0027670 AT5G05410.1 56.667 60 25 1 209 268 76 134 2.05e-13 70.9
Msa0027670 AT2G40350.1 52.542 59 27 1 212 270 67 124 2.54e-13 67.4
Msa0027670 AT2G40350.2 52.542 59 27 1 212 270 74 131 2.75e-13 67.4
Msa0027670 AT1G19210.1 51.667 60 28 1 209 268 9 67 4.91e-13 67.4
Msa0027670 AT3G57600.1 51.613 62 28 2 212 272 28 88 5.58e-13 68.9
Msa0027670 AT1G74930.1 48.529 68 32 2 201 268 12 76 6.00e-13 67.4
Msa0027670 AT3G16280.1 52.459 61 28 1 208 268 57 116 6.12e-13 68.2
Msa0027670 AT3G16280.2 52.459 61 28 1 208 268 75 134 6.28e-13 68.6
Msa0027670 AT3G11020.1 58.621 58 23 1 211 268 77 133 6.63e-13 69.3
Msa0027670 AT3G50260.1 45.455 66 35 1 204 269 13 77 8.60e-13 65.9
Msa0027670 AT2G40340.2 57.895 57 23 1 212 268 14 69 1.29e-12 67.8
Msa0027670 AT2G40340.5 57.895 57 23 1 212 268 14 69 1.29e-12 67.8
Msa0027670 AT2G40340.4 57.895 57 23 1 212 268 14 69 1.29e-12 67.8
Msa0027670 AT3G60490.1 52.542 59 27 1 210 268 69 126 1.43e-12 67.4
Msa0027670 AT2G25820.1 54.386 57 25 1 212 268 26 81 1.50e-12 66.6
Msa0027670 AT2G44940.1 50.000 62 30 1 207 268 95 155 1.64e-12 67.8
Msa0027670 AT2G40340.1 57.895 57 23 1 212 268 72 127 1.67e-12 68.2
Msa0027670 AT5G18450.1 51.724 58 27 1 211 268 33 89 1.68e-12 67.8
Msa0027670 AT2G40340.3 57.895 57 23 1 212 268 72 127 1.78e-12 67.8
Msa0027670 AT2G40340.6 57.895 57 23 1 212 268 79 134 1.80e-12 68.2
Msa0027670 AT5G11590.1 54.386 57 25 1 212 268 51 106 3.48e-12 65.9
Msa0027670 AT4G06746.1 50.000 58 28 1 212 269 36 92 3.68e-12 63.9
Msa0027670 AT5G25390.1 50.769 65 28 1 206 270 1 61 4.48e-12 64.7
Msa0027670 AT1G43160.1 40.909 110 62 3 184 293 35 141 7.11e-12 64.3
Msa0027670 AT4G34410.1 68.421 57 17 1 212 268 136 191 1.04e-11 65.1
Msa0027670 AT4G36900.1 50.877 57 27 1 212 268 30 85 1.30e-11 63.5
Msa0027670 AT5G07310.1 62.295 61 22 1 208 268 88 147 1.73e-11 64.3
Msa0027670 AT2G35700.1 47.541 61 31 1 208 268 41 100 1.91e-11 63.2
Msa0027670 AT1G46768.3 45.902 61 32 1 209 269 28 87 2.09e-11 61.6
Msa0027670 AT1G46768.1 45.902 61 32 1 209 269 28 87 2.13e-11 62.0
Msa0027670 AT1G46768.2 45.902 61 32 1 209 269 28 87 2.13e-11 62.0
Msa0027670 AT4G16750.1 40.625 96 41 3 188 268 1 95 2.17e-11 62.4
Msa0027670 AT5G67190.1 50.877 57 27 1 212 268 21 76 2.87e-11 62.4
Msa0027670 AT2G23340.1 50.877 57 27 1 212 268 28 83 4.28e-11 61.6
Msa0027670 AT1G53170.1 64.407 59 20 1 212 270 31 88 4.33e-11 61.6

Find 52 sgRNAs with CRISPR-Local

Find 523 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGCTCGTCTTCGGTAAT+TGG 0.221863 1_1:+52137014 None:intergenic
CTTGCAGCATTTCTATATCT+TGG 0.282419 1_1:+52137126 None:intergenic
GACTCCAACATCAATTGTTT+TGG 0.284110 1_1:+52136996 None:intergenic
GAAATTTCCTTTGAATCATT+TGG 0.301807 1_1:-52137095 Msa0027670:CDS
ATTCAATATGATTGCAGAAA+AGG 0.378016 1_1:-52145659 Msa0027670:CDS
ATCAGAAGGATCAAGTGTTT+TGG 0.390577 1_1:-52136589 Msa0027670:CDS
TAGTGCTGAAGATGCTGCTT+TGG 0.408553 1_1:-52136817 Msa0027670:CDS
GGAGGAAGAAGGGTTTGGTT+AGG 0.417111 1_1:-52145800 Msa0027670:CDS
TAACAGAAACCATGCCTCAT+AGG 0.421808 1_1:-52137172 Msa0027670:intron
GCATTTCTATATCTTGGTTG+TGG 0.422922 1_1:+52137132 None:intergenic
GATCAAAAGTCATCATATAT+AGG 0.429788 1_1:-52136927 Msa0027670:CDS
GGTGTAAACAATAATAAAGC+AGG 0.463482 1_1:-52136624 Msa0027670:CDS
CAAGAGGAGGAAGAAGGGTT+TGG 0.464860 1_1:-52145805 Msa0027670:CDS
TGTCTTGGTGTTAGAAGACT+TGG 0.468393 1_1:-52145528 Msa0027670:CDS
AGGTGTGAGGAAAAGACCTT+GGG 0.468743 1_1:-52145858 None:intergenic
ATTCAATATGATTGCAGAGA+AGG 0.479546 1_1:-52136708 Msa0027670:CDS
CTCTCCTTGAGTGCAAGTGC+AGG 0.481899 1_1:+52136678 None:intergenic
CAAGAGGAGGAAGAAGGGTT+TGG 0.486954 1_1:-52136854 Msa0027670:CDS
CAAAGAAAGATGTCATCAAA+AGG 0.492779 1_1:-52136645 Msa0027670:CDS
TTCACCTGCACTTGCACTCA+AGG 0.497952 1_1:-52136682 Msa0027670:CDS
CAAAGAAAGATGTTATCAAA+AGG 0.499994 1_1:-52145596 Msa0027670:CDS
CACAACAAGAGGAGGAAGAA+GGG 0.509329 1_1:-52136859 Msa0027670:CDS
CACAACAAGAGGAGGAAGAA+GGG 0.509329 1_1:-52145810 Msa0027670:CDS
ACACAACAAGAGGAGGAAGA+AGG 0.516868 1_1:-52136860 Msa0027670:CDS
ACACAACAAGAGGAGGAAGA+AGG 0.516868 1_1:-52145811 Msa0027670:CDS
ATTGCAGAATAATACTAAGA+TGG 0.517652 1_1:-52136949 Msa0027670:CDS
ATTAATACCAAATGATTCAA+AGG 0.536862 1_1:+52137088 None:intergenic
ATCAGAGGGATCAAGTGTCT+TGG 0.547964 1_1:-52145543 Msa0027670:CDS
TTCAATATGATTGCAGAGAA+GGG 0.552987 1_1:-52136707 Msa0027670:CDS
GATTCAAAGGAAATTTCTGA+AGG 0.553216 1_1:+52137101 None:intergenic
CGAGCCAAAACAATTGATGT+TGG 0.560559 1_1:-52137000 Msa0027670:CDS
TAGGTGTGAGGAAAAGACCT+TGG 0.564548 1_1:-52145859 None:intergenic
TGAGAAATCGATCATATCAA+AGG 0.565420 1_1:+52137052 None:intergenic
GGAGGAAGAAGGGTTTGGCT+AGG 0.578788 1_1:-52136849 Msa0027670:CDS
AAAGAGGAACAACTCCTATG+AGG 0.581206 1_1:+52137158 None:intergenic
ATCAGAGACACAACAAGAGG+AGG 0.603140 1_1:-52145818 Msa0027670:CDS
ATTCAAAGGAAATTTCTGAA+GGG 0.605187 1_1:+52137102 None:intergenic
GGGAAACAAGATCAATCAGA+AGG 0.616003 1_1:-52136603 Msa0027670:CDS
ATCAGAGACACAACAAGAGG+AGG 0.623407 1_1:-52136867 Msa0027670:CDS
GTGTAAACAATAATAAAGCA+GGG 0.631868 1_1:-52136623 Msa0027670:CDS
GGAACAACTCCTATGAGGCA+TGG 0.640719 1_1:+52137163 None:intergenic
AGGGAAACAGGATCAATCAG+AGG 0.642051 1_1:-52145558 Msa0027670:CDS
GTCTTGGTGTTAGAAGACTT+GGG 0.642890 1_1:-52145527 Msa0027670:CDS
CTGCACTTGCACTAAAAGAG+AGG 0.642926 1_1:-52145628 Msa0027670:CDS
GGGAAACAGGATCAATCAGA+GGG 0.643527 1_1:-52145557 Msa0027670:CDS
TCAGCTGCATACTTTCCCCA+AGG 0.649835 1_1:+52136891 None:intergenic
GAGATCAGAGACACAACAAG+AGG 0.656508 1_1:-52145821 Msa0027670:CDS
GAGATCAGAGACACAACAAG+AGG 0.662555 1_1:-52136870 Msa0027670:CDS
CAAGATATAGAAATGCTGCA+AGG 0.679469 1_1:-52137125 Msa0027670:CDS
ATCTTGGTTGTGGAACAAAG+AGG 0.713106 1_1:+52137142 None:intergenic
GTGTGAGGAAAAGACCTTGG+GGG 0.735494 1_1:-52145856 Msa0027670:CDS
GGTGTGAGGAAAAGACCTTG+GGG 0.758665 1_1:-52145857 Msa0027670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAAAAAAAAATTT+GGG + chr1_1:52139551-52139570 None:intergenic 0.0%
!!! TTTTTTTTAAAAAAAAAATT+TGG + chr1_1:52139552-52139571 None:intergenic 0.0%
!! ATTTAAGTAAAATAACTTTA+TGG - chr1_1:52139403-52139422 Msa0027670:intron 10.0%
!!! CAAAAAATTGTATTTTTTTT+AGG - chr1_1:52140042-52140061 Msa0027670:intron 10.0%
!!! AAAAATTGTATTTTTTTTAG+GGG - chr1_1:52140044-52140063 Msa0027670:intron 10.0%
!!! TTAAAAGTATAAAATAAATC+TGG + chr1_1:52141896-52141915 None:intergenic 10.0%
!! AAAACAAATCAATAATTTAT+GGG + chr1_1:52142643-52142662 None:intergenic 10.0%
!! AATATTATACTAAATATGTA+GGG - chr1_1:52142732-52142751 Msa0027670:intron 10.0%
!!! TTCTAACTTATTTATTTTAA+TGG - chr1_1:52142776-52142795 Msa0027670:intron 10.0%
!! AGAAAAAGAAATTTAAAAAA+GGG - chr1_1:52143274-52143293 Msa0027670:intron 10.0%
!!! ATTTTATTTATAATAGTGAT+CGG - chr1_1:52144083-52144102 Msa0027670:intron 10.0%
!!! GTATTTGTTTAATTTAAAAA+GGG + chr1_1:52144351-52144370 None:intergenic 10.0%
!! TAACTTCAATAATATATATT+AGG - chr1_1:52144685-52144704 Msa0027670:intron 10.0%
!! AACTTCAATAATATATATTA+GGG - chr1_1:52144686-52144705 Msa0027670:intron 10.0%
!!! AATATGCTTAAATTTTTTTT+AGG + chr1_1:52144932-52144951 None:intergenic 10.0%
!!! ATTTTCATTGTTTCTAAAAA+TGG + chr1_1:52137775-52137794 None:intergenic 15.0%
!! CAAAGAAAAAATATAAAGTT+AGG + chr1_1:52138218-52138237 None:intergenic 15.0%
!! GAAGAAAATTTCTTTAAATA+TGG + chr1_1:52140174-52140193 None:intergenic 15.0%
!! ATAGTTATGTTTATAGTATA+AGG - chr1_1:52140371-52140390 Msa0027670:intron 15.0%
!!! AGTATTGATTATTATACTAT+GGG + chr1_1:52140568-52140587 None:intergenic 15.0%
!!! TAGTATTGATTATTATACTA+TGG + chr1_1:52140569-52140588 None:intergenic 15.0%
!! ACAAAGATTCAAAAATAAAA+TGG - chr1_1:52141300-52141319 Msa0027670:intron 15.0%
!! AAAAATTAAATAGTTGTTGT+CGG - chr1_1:52141447-52141466 Msa0027670:intron 15.0%
!!! AAAAATGTTAAGTTGTTTAA+TGG + chr1_1:52142200-52142219 None:intergenic 15.0%
!!! ATTAAACAACTTAACATTTT+TGG - chr1_1:52142199-52142218 Msa0027670:intron 15.0%
!! GAAAACAAATCAATAATTTA+TGG + chr1_1:52142644-52142663 None:intergenic 15.0%
!! GAATATTATACTAAATATGT+AGG - chr1_1:52142731-52142750 Msa0027670:intron 15.0%
!! ATATTATACTAAATATGTAG+GGG - chr1_1:52142733-52142752 Msa0027670:intron 15.0%
!! AATAAATAAGTTAGAAAATC+TGG + chr1_1:52142772-52142791 None:intergenic 15.0%
!!! CATTTTTTTTAAGTATTTAG+TGG + chr1_1:52142813-52142832 None:intergenic 15.0%
!!! TGTTATTTTTTAGTTTTACA+CGG + chr1_1:52142976-52142995 None:intergenic 15.0%
!! AATCAAATCAAAGAAAAAAT+CGG - chr1_1:52143239-52143258 Msa0027670:intron 15.0%
!! GAGAAAAAGAAATTTAAAAA+AGG - chr1_1:52143273-52143292 Msa0027670:intron 15.0%
!! AATTATAATTTGAAAACAAG+TGG - chr1_1:52143439-52143458 Msa0027670:intron 15.0%
!! ATTATAATTTGAAAACAAGT+GGG - chr1_1:52143440-52143459 Msa0027670:intron 15.0%
!!! GGTTCATTTATTTTATTTTT+AGG - chr1_1:52143570-52143589 Msa0027670:intron 15.0%
!! AAATATAATAAATGCTACAT+TGG - chr1_1:52143800-52143819 Msa0027670:intron 15.0%
!!! GTTTTAATTATAAAAGTGAT+CGG + chr1_1:52143974-52143993 None:intergenic 15.0%
!! AATAAATGTGTAAAATTCAA+AGG - chr1_1:52144297-52144316 Msa0027670:intron 15.0%
!!! CGTATTTGTTTAATTTAAAA+AGG + chr1_1:52144352-52144371 None:intergenic 15.0%
!!! ATTTTTAACCAAATAAGTTT+AGG - chr1_1:52144392-52144411 Msa0027670:intron 15.0%
!!! AATTGAACTTGTTATTTATA+TGG - chr1_1:52144573-52144592 Msa0027670:intron 15.0%
!!! TATGTTACTTATAACATATA+GGG + chr1_1:52144893-52144912 None:intergenic 15.0%
!!! TTATGTTACTTATAACATAT+AGG + chr1_1:52144894-52144913 None:intergenic 15.0%
!! GGCAAATATAAATATTAATT+TGG - chr1_1:52145114-52145133 Msa0027670:intron 15.0%
!! CTCAAATTACGAATAAAATT+TGG + chr1_1:52137043-52137062 None:intergenic 20.0%
!!! CATTTTCTTTTTTTGTTCAA+TGG + chr1_1:52137094-52137113 None:intergenic 20.0%
!! ATAATAAATCCTAATGCAAA+TGG + chr1_1:52137605-52137624 None:intergenic 20.0%
!! TCATTATTTCCTTAAATGTT+AGG - chr1_1:52137811-52137830 Msa0027670:intron 20.0%
!! TGTTACATACATTTAATGTT+GGG + chr1_1:52138096-52138115 None:intergenic 20.0%
!! ATGTTACATACATTTAATGT+TGG + chr1_1:52138097-52138116 None:intergenic 20.0%
!! AAAGAAAATATGATTTCTAC+TGG - chr1_1:52138277-52138296 Msa0027670:intron 20.0%
!! GGGATTTAATTAATATAGTT+GGG + chr1_1:52138990-52139009 None:intergenic 20.0%
!! TGGGATTTAATTAATATAGT+TGG + chr1_1:52138991-52139010 None:intergenic 20.0%
!!! TAAACATTTTTTTTAGGGAT+GGG + chr1_1:52139030-52139049 None:intergenic 20.0%
!!! AGGACTAAACATTTTTTTTA+GGG + chr1_1:52139035-52139054 None:intergenic 20.0%
!! ATTCTCTCTAATACAAATTT+AGG + chr1_1:52139140-52139159 None:intergenic 20.0%
!! CATTTATCTAAATCTAAAGA+CGG - chr1_1:52139240-52139259 Msa0027670:intron 20.0%
!! AGATTTGATATAGTGATAAA+AGG + chr1_1:52139301-52139320 None:intergenic 20.0%
!! AAAAAAATAGTGTTTGATGT+TGG - chr1_1:52139432-52139451 Msa0027670:intron 20.0%
!! TACAATTGAACTAAATTAGA+AGG + chr1_1:52139832-52139851 None:intergenic 20.0%
!! ATATAAACTATATGTGAAAG+AGG + chr1_1:52141100-52141119 None:intergenic 20.0%
!! GGTAGCTAAATATATAATAT+AGG + chr1_1:52141132-52141151 None:intergenic 20.0%
!! TTCTTGTTCTTACTAATTTA+TGG + chr1_1:52141172-52141191 None:intergenic 20.0%
!!! ATCTCTTTAGTTTTTATAGA+TGG - chr1_1:52141249-52141268 Msa0027670:intron 20.0%
!! AAATGCTAACTAATATTTGT+GGG + chr1_1:52141858-52141877 None:intergenic 20.0%
!! AAAATGCTAACTAATATTTG+TGG + chr1_1:52141859-52141878 None:intergenic 20.0%
!!! TGATGTTTTTGCTATTAAAA+AGG - chr1_1:52142038-52142057 Msa0027670:intron 20.0%
!!! ACGTTATTATGCTTTTTTTA+AGG + chr1_1:52142074-52142093 None:intergenic 20.0%
!!! TGTTTAATGGTTTAATTTAG+AGG + chr1_1:52142187-52142206 None:intergenic 20.0%
!! TATGTATAATTCATTCCTTT+AGG - chr1_1:52142353-52142372 Msa0027670:intron 20.0%
!! ATGTATAATTCATTCCTTTA+GGG - chr1_1:52142354-52142373 Msa0027670:intron 20.0%
!! GTCAAAAAGTTGTTAAAAAA+TGG + chr1_1:52142431-52142450 None:intergenic 20.0%
!!! TTGATTGGTCAAAAATAATA+GGG + chr1_1:52142509-52142528 None:intergenic 20.0%
!!! TTTGATTGGTCAAAAATAAT+AGG + chr1_1:52142510-52142529 None:intergenic 20.0%
!!! TACAACTTTTATAACAACTT+TGG + chr1_1:52142542-52142561 None:intergenic 20.0%
!!! TCTGCTTTACATTTTTTTTT+TGG + chr1_1:52142682-52142701 None:intergenic 20.0%
!!! ATATTTTGAGACAATCATTA+TGG - chr1_1:52142924-52142943 Msa0027670:intron 20.0%
!!! TATTTTGAGACAATCATTAT+GGG - chr1_1:52142925-52142944 Msa0027670:intron 20.0%
!!! TAATTTTAACCATAATTTGC+TGG + chr1_1:52143133-52143152 None:intergenic 20.0%
!!! TTGATTTGATTTGCATTTAA+AGG + chr1_1:52143230-52143249 None:intergenic 20.0%
!!! AAGAACATAGTTATTTTAAG+AGG - chr1_1:52143351-52143370 Msa0027670:intron 20.0%
!! TTATAATTTGAAAACAAGTG+GGG - chr1_1:52143441-52143460 Msa0027670:intron 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG - chr1_1:52143680-52143699 Msa0027670:intron 20.0%
!! TTGATGAAATCCAATAAATA+AGG - chr1_1:52143763-52143782 Msa0027670:intron 20.0%
!! TGATGAAATCCAATAAATAA+GGG - chr1_1:52143764-52143783 Msa0027670:intron 20.0%
!!! ACTATTATACCCTTATTTAT+TGG + chr1_1:52143776-52143795 None:intergenic 20.0%
!!! AATAAATAAGGGTATAATAG+TGG - chr1_1:52143775-52143794 Msa0027670:intron 20.0%
!! TATTGAAGTTATTGCTATAT+TGG + chr1_1:52144676-52144695 None:intergenic 20.0%
!! TTATATTTGCCTCAAATTAA+AGG + chr1_1:52145105-52145124 None:intergenic 20.0%
!! ATTAATACCAAATGATTCAA+AGG + chr1_1:52145281-52145300 None:intergenic 20.0%
! ATTCAATATGATTGCAGAAA+AGG - chr1_1:52136707-52136726 Msa0027670:CDS 25.0%
! CAAAGAAAGATGTTATCAAA+AGG - chr1_1:52136770-52136789 Msa0027670:CDS 25.0%
!! AAAGGTGTAAAAAATAAAGC+AGG - chr1_1:52136788-52136807 Msa0027670:CDS 25.0%
! AAGGTGTAAAAAATAAAGCA+GGG - chr1_1:52136789-52136808 Msa0027670:CDS 25.0%
! AATACTGTCTATTTGCATTA+AGG + chr1_1:52137124-52137143 None:intergenic 25.0%
!! CACATTTAAGACATAAAATG+TGG - chr1_1:52137157-52137176 Msa0027670:CDS 25.0%
!! TGAGTTTATCACCATTTTAA+GGG + chr1_1:52137192-52137211 None:intergenic 25.0%
!! TTTGATCTTCCATTTTGTTA+GGG - chr1_1:52137216-52137235 Msa0027670:intron 25.0%
!! GTATTCTTATCTAAGATCTT+TGG + chr1_1:52137256-52137275 None:intergenic 25.0%
! AAATTTAAGTACTCTCACTT+AGG - chr1_1:52137372-52137391 Msa0027670:intron 25.0%
! TATTCTTTCCTATAAATTGG+AGG + chr1_1:52137508-52137527 None:intergenic 25.0%
! TGCTATTCTTTCCTATAAAT+TGG + chr1_1:52137511-52137530 None:intergenic 25.0%
! AAATTACTACCATTTGCATT+AGG - chr1_1:52137593-52137612 Msa0027670:intron 25.0%
! ATAGAATTGACGATAGAATT+AGG + chr1_1:52137698-52137717 None:intergenic 25.0%
! AGTAACAAAATATTATCACG+CGG + chr1_1:52138067-52138086 None:intergenic 25.0%
!! TGAAACCATTTTCTATTGAA+GGG + chr1_1:52138172-52138191 None:intergenic 25.0%
!! ATGAAACCATTTTCTATTGA+AGG + chr1_1:52138173-52138192 None:intergenic 25.0%
! AGTTTAAACTGTTTCCAAAT+AGG + chr1_1:52138836-52138855 None:intergenic 25.0%
! AAATTTGAGAGACAAGTAAA+TGG - chr1_1:52138864-52138883 Msa0027670:intron 25.0%
! AGATAGATATTAGGGTTTAA+AGG - chr1_1:52138909-52138928 Msa0027670:intron 25.0%
!!! CTAAACATTTTTTTTAGGGA+TGG + chr1_1:52139031-52139050 None:intergenic 25.0%
!!! GAGGACTAAACATTTTTTTT+AGG + chr1_1:52139036-52139055 None:intergenic 25.0%
!! AATTGAAAAAGAACCCATTT+TGG + chr1_1:52139216-52139235 None:intergenic 25.0%
!! GTTTTATATCTAGAGGTTTT+GGG + chr1_1:52139274-52139293 None:intergenic 25.0%
!!! AGTTTTATATCTAGAGGTTT+TGG + chr1_1:52139275-52139294 None:intergenic 25.0%
!!! AGGATAAGTTTTATATCTAG+AGG + chr1_1:52139281-52139300 None:intergenic 25.0%
!!! TTATTATTTTTCAGCATGAC+AGG - chr1_1:52139750-52139769 Msa0027670:intron 25.0%
!!! TATTATTTTTCAGCATGACA+GGG - chr1_1:52139751-52139770 Msa0027670:intron 25.0%
! TACAGTTGAACTAAATTAGA+AGG + chr1_1:52139889-52139908 None:intergenic 25.0%
!! TTTGCGATTTTATATGACAA+AGG + chr1_1:52139944-52139963 None:intergenic 25.0%
! ATGAAAAGTTCGATCTTAAT+TGG - chr1_1:52140224-52140243 Msa0027670:intron 25.0%
!! CCATAAAAACTTACTTGTTT+TGG + chr1_1:52140436-52140455 None:intergenic 25.0%
!! CCAAAACAAGTAAGTTTTTA+TGG - chr1_1:52140433-52140452 Msa0027670:intron 25.0%
! TACAAGTAGAAAATTTGTCT+TGG + chr1_1:52140505-52140524 None:intergenic 25.0%
! TTCACACTAAGTGAATATTA+AGG - chr1_1:52140766-52140785 Msa0027670:intron 25.0%
! ATGGTAAATACACTTATTTG+AGG + chr1_1:52141153-52141172 None:intergenic 25.0%
!! GAGATCAAAAGTGTAAAAAA+GGG + chr1_1:52141234-52141253 None:intergenic 25.0%
!! AGAGATCAAAAGTGTAAAAA+AGG + chr1_1:52141235-52141254 None:intergenic 25.0%
! TAAACAATAGAGAGAGAAAA+AGG - chr1_1:52141610-52141629 Msa0027670:intron 25.0%
! ATTAACCAAATGTATCAAGA+CGG + chr1_1:52142109-52142128 None:intergenic 25.0%
! AAAATAATAGGGAGAGAAAA+AGG + chr1_1:52142498-52142517 None:intergenic 25.0%
!!! TTTGGTTTTCTCTTTTTGAT+TGG + chr1_1:52142524-52142543 None:intergenic 25.0%
! CAAATCAATAATTTATGGGA+CGG + chr1_1:52142639-52142658 None:intergenic 25.0%
! ATGATGCATATGATCTTAAT+TGG - chr1_1:52142865-52142884 Msa0027670:intron 25.0%
!! TAACACTTAATTTAAGACGA+AGG - chr1_1:52142991-52143010 Msa0027670:intron 25.0%
! AAACAAAATCCAGCAAATTA+TGG - chr1_1:52143121-52143140 Msa0027670:intron 25.0%
! TATAATTTGAAAACAAGTGG+GGG - chr1_1:52143442-52143461 Msa0027670:intron 25.0%
! AAACGATTAATATTGTGAGA+CGG + chr1_1:52143631-52143650 None:intergenic 25.0%
! CTCACAATATTAATCGTTTA+AGG - chr1_1:52143632-52143651 Msa0027670:intron 25.0%
! AAGAAACAATAATTGTGAGA+CGG - chr1_1:52143866-52143885 Msa0027670:intron 25.0%
! TTAATTATAAAAGTGATCGG+AGG + chr1_1:52143971-52143990 None:intergenic 25.0%
! AAGGAACACTTAATTTAAGA+TGG - chr1_1:52144316-52144335 Msa0027670:intron 25.0%
!! CTTTTTGACCTAAACTTATT+TGG + chr1_1:52144403-52144422 None:intergenic 25.0%
!! ACTTGAAGTAATCTTATTTG+AGG + chr1_1:52144511-52144530 None:intergenic 25.0%
! TCAAATAAGATTACTTCAAG+TGG - chr1_1:52144510-52144529 Msa0027670:intron 25.0%
! TATGTCAACTCAAAAGTTTA+CGG + chr1_1:52144617-52144636 None:intergenic 25.0%
!! ATGGTAATAATTCCCTTTTA+TGG + chr1_1:52144751-52144770 None:intergenic 25.0%
! AAGGGAATTATTACCATAAA+AGG - chr1_1:52144754-52144773 Msa0027670:intron 25.0%
!! TCAAAAACAGTTTCCTTTTA+TGG + chr1_1:52144770-52144789 None:intergenic 25.0%
! TTCAATTATGGATATGGATT+TGG + chr1_1:52145063-52145082 None:intergenic 25.0%
! GTTGTATTCAATTATGGATA+TGG + chr1_1:52145069-52145088 None:intergenic 25.0%
! ATTCAAAGGAAATTTCTGAA+GGG + chr1_1:52145267-52145286 None:intergenic 25.0%
! GAAATTTCCTTTGAATCATT+TGG - chr1_1:52145271-52145290 Msa0027670:intron 25.0%
! ATTGCAGAATAATACTAAGA+TGG - chr1_1:52145417-52145436 Msa0027670:intron 25.0%
! GATCAAAAGTCATCATATAT+AGG - chr1_1:52145439-52145458 Msa0027670:intron 25.0%
! GTGTAAACAATAATAAAGCA+GGG - chr1_1:52145743-52145762 Msa0027670:CDS 25.0%
! TGCTCAATTTTTCTGTTCAA+AGG - chr1_1:52136663-52136682 Msa0027670:CDS 30.0%
! GCTCAATTTTTCTGTTCAAA+GGG - chr1_1:52136664-52136683 Msa0027670:CDS 30.0%
AAAAAATAAAGCAGGGAAAC+AGG - chr1_1:52136796-52136815 Msa0027670:CDS 30.0%
! GTGAGTTTATCACCATTTTA+AGG + chr1_1:52137193-52137212 None:intergenic 30.0%
! CTTTGATCTTCCATTTTGTT+AGG - chr1_1:52137215-52137234 Msa0027670:intron 30.0%
AAGTGTTTGATCTATTGTGA+GGG + chr1_1:52137436-52137455 None:intergenic 30.0%
TATTGTTTGCAAGTAAGCTA+GGG + chr1_1:52137721-52137740 None:intergenic 30.0%
TTATTGTTTGCAAGTAAGCT+AGG + chr1_1:52137722-52137741 None:intergenic 30.0%
! AAGGAGAGACAAATTAGTTT+GGG + chr1_1:52137901-52137920 None:intergenic 30.0%
GTCTTGTAATTTCTTCCATT+TGG - chr1_1:52137935-52137954 Msa0027670:intron 30.0%
!!! TTTTTTCCCCTTATTTGTTG+AGG - chr1_1:52137986-52138005 Msa0027670:intron 30.0%
!! TTTTTCCCCTTATTTGTTGA+GGG - chr1_1:52137987-52138006 Msa0027670:intron 30.0%
AAAATAAGAGACGAGAAAAG+AGG + chr1_1:52138042-52138061 None:intergenic 30.0%
TATTGAAGTGAACGTTATGA+TGG + chr1_1:52138145-52138164 None:intergenic 30.0%
AATCTCCCTTCAATAGAAAA+TGG - chr1_1:52138164-52138183 Msa0027670:intron 30.0%
CGATTAAATTGTGTATGTGA+AGG + chr1_1:52138326-52138345 None:intergenic 30.0%
GTGATATGTATAGTTTCATC+AGG + chr1_1:52138474-52138493 None:intergenic 30.0%
!!! TTTTTGGTTGCTTAAGATCA+AGG + chr1_1:52138613-52138632 None:intergenic 30.0%
! TATGACAGTTGCAATGTTTT+TGG + chr1_1:52138629-52138648 None:intergenic 30.0%
AAAACTGTTTAGCCAAAACA+AGG - chr1_1:52138695-52138714 Msa0027670:intron 30.0%
AAACTGTTTAGCCAAAACAA+GGG - chr1_1:52138696-52138715 Msa0027670:intron 30.0%
TTGGAGGAAGATAGATATTA+GGG - chr1_1:52138901-52138920 Msa0027670:intron 30.0%
TAGATATTAGGGTTTAAAGG+AGG - chr1_1:52138912-52138931 Msa0027670:intron 30.0%
!! AGACTTCTTTTGAGAGAATA+GGG + chr1_1:52139058-52139077 None:intergenic 30.0%
!! AAGACTTCTTTTGAGAGAAT+AGG + chr1_1:52139059-52139078 None:intergenic 30.0%
ATTAGAGAGAATCACATTTG+AGG - chr1_1:52139148-52139167 Msa0027670:intron 30.0%
!! TGATGTTGGTTTCTATTATG+TGG - chr1_1:52139446-52139465 Msa0027670:intron 30.0%
!! GATGTTGGTTTCTATTATGT+GGG - chr1_1:52139447-52139466 Msa0027670:intron 30.0%
TGTAACTTTAACATCAGTGA+AGG - chr1_1:52139612-52139631 Msa0027670:intron 30.0%
ATGAAAATTTGCCATCACAA+GGG + chr1_1:52139693-52139712 None:intergenic 30.0%
!!! ACCTAGTTTTAATGGATTTG+AGG - chr1_1:52139780-52139799 Msa0027670:intron 30.0%
ACCTCAAATCCATTAAAACT+AGG + chr1_1:52139784-52139803 None:intergenic 30.0%
! TCTTTTTCTCCTTCTATTTG+AGG - chr1_1:52139853-52139872 Msa0027670:intron 30.0%
! TCTTTTTCTCCTTCTATTTG+AGG - chr1_1:52139853-52139872 Msa0027670:intron 30.0%
!! TTGCTTTGAAAGTAATCCAA+TGG - chr1_1:52140320-52140339 Msa0027670:intron 30.0%
GTAAATTGTGAGATTTCCAT+TGG + chr1_1:52140339-52140358 None:intergenic 30.0%
AGAGTTCAAAAGGTGAAAAA+AGG - chr1_1:52140720-52140739 Msa0027670:intron 30.0%
ACACTAAGTGAATATTAAGG+CGG - chr1_1:52140769-52140788 Msa0027670:intron 30.0%
!!! TCTTGTCCATGTTTTTTAGA+CGG + chr1_1:52140902-52140921 None:intergenic 30.0%
AACAACATACATTCGAGTAT+GGG + chr1_1:52141077-52141096 None:intergenic 30.0%
TACGCAAACATGATTAATGA+TGG - chr1_1:52141739-52141758 Msa0027670:intron 30.0%
GATACTAGTACAAAGAAACT+AGG - chr1_1:52141774-52141793 Msa0027670:intron 30.0%
AAGAAACTAGGCAAAAAACA+AGG - chr1_1:52141786-52141805 Msa0027670:intron 30.0%
TATTTGTGGGACATTAGTTA+AGG + chr1_1:52141845-52141864 None:intergenic 30.0%
CAACCATTAGATTAATCCAA+CGG - chr1_1:52141944-52141963 Msa0027670:intron 30.0%
AAACAGAATGTAGAGGAAAT+TGG + chr1_1:52142018-52142037 None:intergenic 30.0%
AACATCAAAACAGAATGTAG+AGG + chr1_1:52142025-52142044 None:intergenic 30.0%
TTAACCAAATGTATCAAGAC+GGG + chr1_1:52142108-52142127 None:intergenic 30.0%
TGACAAGTTGTCTAAACAAT+TGG - chr1_1:52142133-52142152 Msa0027670:intron 30.0%
!! AGATTTTAGAGAGTTTGGTT+GGG + chr1_1:52142264-52142283 None:intergenic 30.0%
!! TCAACAGATTTTAGAGAGTT+TGG + chr1_1:52142269-52142288 None:intergenic 30.0%
ATGTCTGCTAAATATGTCAT+TGG - chr1_1:52142291-52142310 Msa0027670:intron 30.0%
GTGATATTTGTACAACTCTT+TGG + chr1_1:52142565-52142584 None:intergenic 30.0%
CGAACTAAGTTATATTCACA+AGG + chr1_1:52142708-52142727 None:intergenic 30.0%
ACATGTATATATATGCTCAC+CGG - chr1_1:52143025-52143044 Msa0027670:intron 30.0%
! TTTTTGATAGGATAATGTGC+TGG + chr1_1:52143104-52143123 None:intergenic 30.0%
!!! TGCTGGATTTTGTTTTTGAT+AGG + chr1_1:52143116-52143135 None:intergenic 30.0%
ACAAGTAAAGAAGAAAACAG+AGG - chr1_1:52143166-52143185 Msa0027670:intron 30.0%
! CTTAATTTGATTGCCAACTT+AGG + chr1_1:52143334-52143353 None:intergenic 30.0%
TAAAATAAATGAACCACGTG+AGG + chr1_1:52143565-52143584 None:intergenic 30.0%
AGGTTTGTACACGATTATTA+AGG - chr1_1:52143652-52143671 Msa0027670:intron 30.0%
TCACCAGCTACAATTAATAA+GGG + chr1_1:52143732-52143751 None:intergenic 30.0%
TTCACCAGCTACAATTAATA+AGG + chr1_1:52143733-52143752 None:intergenic 30.0%
CACATTCACTCTAACAAATA+AGG - chr1_1:52144217-52144236 Msa0027670:intron 30.0%
AAGTTTAGGTCAAAAAGAAG+AGG - chr1_1:52144406-52144425 Msa0027670:intron 30.0%
AATAAGATTACTTCAAGTGG+AGG - chr1_1:52144513-52144532 Msa0027670:intron 30.0%
!!! ACATGCACATGTTATTTTCT+AGG + chr1_1:52144542-52144561 None:intergenic 30.0%
GAAAATAACATGTGCATGTA+TGG - chr1_1:52144543-52144562 Msa0027670:intron 30.0%
ATGTCAACTCAAAAGTTTAC+GGG + chr1_1:52144616-52144635 None:intergenic 30.0%
TGGTTAAGCATACCATAAAA+GGG - chr1_1:52144736-52144755 Msa0027670:intron 30.0%
ACTGGTTAAGGATATGAAAA+AGG + chr1_1:52144845-52144864 None:intergenic 30.0%
CTGCAAGTTGTATTCAATTA+TGG + chr1_1:52145075-52145094 None:intergenic 30.0%
TAATTGAATACAACTTGCAG+TGG - chr1_1:52145075-52145094 Msa0027670:intron 30.0%
AATTGAATACAACTTGCAGT+GGG - chr1_1:52145076-52145095 Msa0027670:intron 30.0%
AGGTTTGACCAATAATTTGA+AGG - chr1_1:52145152-52145171 Msa0027670:intron 30.0%
GGTTTGACCAATAATTTGAA+GGG - chr1_1:52145153-52145172 Msa0027670:intron 30.0%
GTTTGACCAATAATTTGAAG+GGG - chr1_1:52145154-52145173 Msa0027670:intron 30.0%
GATTCAAAGGAAATTTCTGA+AGG + chr1_1:52145268-52145287 None:intergenic 30.0%
TGAGAAATCGATCATATCAA+AGG + chr1_1:52145317-52145336 None:intergenic 30.0%
! TGCTCAATTTTTCTGTTCAA+AGG - chr1_1:52136663-52136682 Msa0027670:CDS 30.0%
! GCTCAATTTTTCTGTTCAAA+GGG - chr1_1:52136664-52136683 Msa0027670:CDS 30.0%
ATTCAATATGATTGCAGAGA+AGG - chr1_1:52145658-52145677 Msa0027670:CDS 30.0%
TTCAATATGATTGCAGAGAA+GGG - chr1_1:52145659-52145678 Msa0027670:CDS 30.0%
CAAAGAAAGATGTCATCAAA+AGG - chr1_1:52145721-52145740 Msa0027670:intron 30.0%
GGTGTAAACAATAATAAAGC+AGG - chr1_1:52145742-52145761 Msa0027670:CDS 30.0%
GCAGATTTACCCTAACAAAA+TGG + chr1_1:52137228-52137247 None:intergenic 35.0%
! GTGTTCTCTTACTGTTTTCT+TGG + chr1_1:52137284-52137303 None:intergenic 35.0%
TGTAGAGTGATATGCAATTC+AGG + chr1_1:52137353-52137372 None:intergenic 35.0%
CAAGTGTTTGATCTATTGTG+AGG + chr1_1:52137437-52137456 None:intergenic 35.0%
! TGCTTTCTTCTCTTGCTATA+TGG - chr1_1:52137455-52137474 Msa0027670:intron 35.0%
TTGCAAGACCTCCAATTTAT+AGG - chr1_1:52137497-52137516 Msa0027670:intron 35.0%
CAAGGAGAGACAAATTAGTT+TGG + chr1_1:52137902-52137921 None:intergenic 35.0%
AAGACCTCTCTCTAAATACA+AGG + chr1_1:52137920-52137939 None:intergenic 35.0%
AGTAGAGAACTTTCACCAAA+TGG + chr1_1:52137953-52137972 None:intergenic 35.0%
AAATAAGGGGAAAAAACCAC+GGG + chr1_1:52137982-52138001 None:intergenic 35.0%
CAAATAAGGGGAAAAAACCA+CGG + chr1_1:52137983-52138002 None:intergenic 35.0%
!! TTTTCCCCTTATTTGTTGAG+GGG - chr1_1:52137988-52138007 Msa0027670:intron 35.0%
CTGAACACACAATATTTACG+TGG + chr1_1:52138017-52138036 None:intergenic 35.0%
TGTATGTAACATTCCTTGCT+AGG - chr1_1:52138105-52138124 Msa0027670:intron 35.0%
GAGAATATGAAATCCTAGCA+AGG + chr1_1:52138121-52138140 None:intergenic 35.0%
TACATCACTTTCTACCATAG+TGG - chr1_1:52138426-52138445 Msa0027670:intron 35.0%
TTAGATATCTACTGCCACTA+TGG + chr1_1:52138443-52138462 None:intergenic 35.0%
ATAATCACAGTGAGAGAAGT+TGG - chr1_1:52138518-52138537 Msa0027670:intron 35.0%
TAGCCAAAACAAGGGAAATT+AGG - chr1_1:52138704-52138723 Msa0027670:intron 35.0%
!! CTTCCTAATTTCCCTTGTTT+TGG + chr1_1:52138710-52138729 None:intergenic 35.0%
!!! AATGGCGTTTGTTGTTTTGT+TGG - chr1_1:52138882-52138901 Msa0027670:intron 35.0%
GTTGGAGGAAGATAGATATT+AGG - chr1_1:52138900-52138919 Msa0027670:intron 35.0%
!!! ACATTTTTTTTAGGGATGGG+TGG + chr1_1:52139027-52139046 None:intergenic 35.0%
AAAATTTGGGCCCCAAAATT+GGG + chr1_1:52139538-52139557 None:intergenic 35.0%
AAAAATTTGGGCCCCAAAAT+TGG + chr1_1:52139539-52139558 None:intergenic 35.0%
! TGTGTTATGCTTGTTAACTG+CGG - chr1_1:52139659-52139678 Msa0027670:intron 35.0%
CATGAAAATTTGCCATCACA+AGG + chr1_1:52139694-52139713 None:intergenic 35.0%
! TCCTTCTATTTGAGGTCTAA+TGG - chr1_1:52139861-52139880 Msa0027670:intron 35.0%
! TCCTTCTATTTGAGGTCTAA+TGG - chr1_1:52139861-52139880 Msa0027670:intron 35.0%
TCGGCTCTCTTAGTAAAAAT+TGG + chr1_1:52140070-52140089 None:intergenic 35.0%
TTCTTAAAAAATCGGAGGCT+CGG + chr1_1:52140089-52140108 None:intergenic 35.0%
!!! AGCCTCCGATTTTTTAAGAA+CGG - chr1_1:52140089-52140108 Msa0027670:intron 35.0%
TCATGTAGTCGATGCATTTA+TGG - chr1_1:52140125-52140144 Msa0027670:intron 35.0%
ATACGAACTCATAGATGAGT+TGG - chr1_1:52140793-52140812 Msa0027670:intron 35.0%
!!! AACGTTTTTTGTTCGTGTCT+TGG + chr1_1:52140854-52140873 None:intergenic 35.0%
GTCTAAAAAACATGGACAAG+AGG - chr1_1:52140901-52140920 Msa0027670:intron 35.0%
!!! TGGGTTTTTTTGTTAGAGAG+AGG - chr1_1:52141012-52141031 Msa0027670:intron 35.0%
GAACAACATACATTCGAGTA+TGG + chr1_1:52141078-52141097 None:intergenic 35.0%
GCTAGCAACATCTTTACTAA+GGG + chr1_1:52141554-52141573 None:intergenic 35.0%
AGCTAGCAACATCTTTACTA+AGG + chr1_1:52141555-52141574 None:intergenic 35.0%
GAGAGAAAGTTGTCAAAAAG+TGG - chr1_1:52141666-52141685 Msa0027670:intron 35.0%
! TTTTCCCGTCTTGATACATT+TGG - chr1_1:52142101-52142120 Msa0027670:intron 35.0%
!! GATTTTAGAGAGTTTGGTTG+GGG + chr1_1:52142263-52142282 None:intergenic 35.0%
!! CAGATTTTAGAGAGTTTGGT+TGG + chr1_1:52142265-52142284 None:intergenic 35.0%
ATAGTACACACATGATGACA+TGG + chr1_1:52142336-52142355 None:intergenic 35.0%
!! AATTCATTCCTTTAGGGCTA+AGG - chr1_1:52142360-52142379 Msa0027670:intron 35.0%
!! ATTCATTCCTTTAGGGCTAA+GGG - chr1_1:52142361-52142380 Msa0027670:intron 35.0%
TCAATAATTTATGGGACGGA+AGG + chr1_1:52142635-52142654 None:intergenic 35.0%
CATGTATATATATGCTCACC+GGG - chr1_1:52143026-52143045 Msa0027670:intron 35.0%
ATGTATATATATGCTCACCG+GGG - chr1_1:52143027-52143046 Msa0027670:intron 35.0%
AATTGCATTAGCTGAACTTG+AGG + chr1_1:52143053-52143072 None:intergenic 35.0%
TATCACTCAATTGCCTAAGT+TGG - chr1_1:52143318-52143337 Msa0027670:intron 35.0%
GATTAATATTGTGAGACGGA+GGG + chr1_1:52143627-52143646 None:intergenic 35.0%
AACAATAATTGTGAGACGGA+AGG - chr1_1:52143870-52143889 Msa0027670:intron 35.0%
ATACTCCACAGTCTCAAATT+AGG - chr1_1:52143929-52143948 Msa0027670:intron 35.0%
!!! TGCACATGTTATTTTCTAGG+TGG + chr1_1:52144539-52144558 None:intergenic 35.0%
CTGGTTAAGCATACCATAAA+AGG - chr1_1:52144735-52144754 Msa0027670:intron 35.0%
ACATATAGGGAAATGCTAAC+CGG + chr1_1:52144880-52144899 None:intergenic 35.0%
TAGATTCTCTCAACCTGTTT+CGG - chr1_1:52144957-52144976 Msa0027670:intron 35.0%
ATTGAATACAACTTGCAGTG+GGG - chr1_1:52145077-52145096 Msa0027670:intron 35.0%
TGTCTTCCCCTTCAAATTAT+TGG + chr1_1:52145163-52145182 None:intergenic 35.0%
TGGTTTCTGTTAATGCTTCT+TGG + chr1_1:52145186-52145205 None:intergenic 35.0%
GCATTTCTATATCTTGGTTG+TGG + chr1_1:52145237-52145256 None:intergenic 35.0%
CTTGCAGCATTTCTATATCT+TGG + chr1_1:52145243-52145262 None:intergenic 35.0%
CAAGATATAGAAATGCTGCA+AGG - chr1_1:52145241-52145260 Msa0027670:intron 35.0%
! GACTCCAACATCAATTGTTT+TGG + chr1_1:52145373-52145392 None:intergenic 35.0%
! ATCAGAAGGATCAAGTGTTT+TGG - chr1_1:52145777-52145796 Msa0027670:CDS 35.0%
!!! TGTTTTGGTGTTAGAAGACT+TGG - chr1_1:52145792-52145811 Msa0027670:CDS 35.0%
!!! GTTTTGGTGTTAGAAGACTT+GGG - chr1_1:52145793-52145812 Msa0027670:CDS 35.0%
! CAAGCTGCATTTTCAATGAG+AGG - chr1_1:52136629-52136648 Msa0027670:CDS 40.0%
!! TGTCTTGGTGTTAGAAGACT+TGG - chr1_1:52136838-52136857 Msa0027670:CDS 40.0%
!! GTCTTGGTGTTAGAAGACTT+GGG - chr1_1:52136839-52136858 Msa0027670:CDS 40.0%
TTAATCTGCTCAGCGTGTTT+AGG - chr1_1:52136986-52137005 Msa0027670:CDS 40.0%
GGCAACACATACCCTTAAAA+TGG - chr1_1:52137178-52137197 Msa0027670:intron 40.0%
CAAAAGGAATCAAGGGAGAT+AGG + chr1_1:52137660-52137679 None:intergenic 40.0%
GGTAGCTCAAAAGGAATCAA+GGG + chr1_1:52137667-52137686 None:intergenic 40.0%
AGGTAGCTCAAAAGGAATCA+AGG + chr1_1:52137668-52137687 None:intergenic 40.0%
TCCTTAAATGTTAGGTCACG+AGG - chr1_1:52137819-52137838 Msa0027670:intron 40.0%
CCTTAAATGTTAGGTCACGA+GGG - chr1_1:52137820-52137839 Msa0027670:intron 40.0%
CTTAAATGTTAGGTCACGAG+GGG - chr1_1:52137821-52137840 Msa0027670:intron 40.0%
CTCTCCTTGTATTTAGAGAG+AGG - chr1_1:52137913-52137932 Msa0027670:intron 40.0%
AATAAGGGGAAAAAACCACG+GGG + chr1_1:52137981-52138000 None:intergenic 40.0%
GAAACCCCTCAACAAATAAG+GGG + chr1_1:52137995-52138014 None:intergenic 40.0%
GGAAACCCCTCAACAAATAA+GGG + chr1_1:52137996-52138015 None:intergenic 40.0%
TGGAAACCCCTCAACAAATA+AGG + chr1_1:52137997-52138016 None:intergenic 40.0%
TTGCACAGCTATATCCTCAA+AGG - chr1_1:52138353-52138372 Msa0027670:intron 40.0%
TGCACAGCTATATCCTCAAA+GGG - chr1_1:52138354-52138373 Msa0027670:intron 40.0%
AGCTTGTGAATATCCCTTTG+AGG + chr1_1:52138370-52138389 None:intergenic 40.0%
!! TCAGTAGTTCTGAATACACG+AGG + chr1_1:52138737-52138756 None:intergenic 40.0%
ACTGTTTCCAAATAGGCTGT+TGG + chr1_1:52138829-52138848 None:intergenic 40.0%
!! CTTCTTTTGAGAGAATAGGG+AGG + chr1_1:52139055-52139074 None:intergenic 40.0%
AGAGAGAATCACATTTGAGG+AGG - chr1_1:52139151-52139170 Msa0027670:intron 40.0%
!!! GTGGTTTTGACTTAGGATCT+AGG + chr1_1:52139185-52139204 None:intergenic 40.0%
!!! TGATCTGGTGGTTTTGACTT+AGG + chr1_1:52139192-52139211 None:intergenic 40.0%
AACCACCAGATCAACCAAAA+TGG - chr1_1:52139199-52139218 Msa0027670:intron 40.0%
ACCACCAGATCAACCAAAAT+GGG - chr1_1:52139200-52139219 Msa0027670:intron 40.0%
!!! AGAACCCATTTTGGTTGATC+TGG + chr1_1:52139207-52139226 None:intergenic 40.0%
GATGCATATTGTATGCACCA+GGG - chr1_1:52139469-52139488 Msa0027670:intron 40.0%
AAATTTGGGCCCCAAAATTG+GGG + chr1_1:52139537-52139556 None:intergenic 40.0%
!!! GGTGTCTGACCTAGTTTTAA+TGG - chr1_1:52139772-52139791 Msa0027670:intron 40.0%
GCCATTAGACCTCAAATAGA+AGG + chr1_1:52139865-52139884 None:intergenic 40.0%
GCCATTAGACCTCAAATAGA+AGG + chr1_1:52139865-52139884 None:intergenic 40.0%
CTGGGCCGTTCTTAAAAAAT+CGG + chr1_1:52140097-52140116 None:intergenic 40.0%
GACTACATGATTGCATACCT+GGG + chr1_1:52140115-52140134 None:intergenic 40.0%
ATGCTTAACCAATACCCTTG+GGG + chr1_1:52140413-52140432 None:intergenic 40.0%
GATGCTTAACCAATACCCTT+GGG + chr1_1:52140414-52140433 None:intergenic 40.0%
ATTCCTTAACCATTGTCCTG+AGG - chr1_1:52140526-52140545 Msa0027670:intron 40.0%
TTCCTTAACCATTGTCCTGA+GGG - chr1_1:52140527-52140546 Msa0027670:intron 40.0%
AAACTCACCTATGAGCAACA+GGG - chr1_1:52140819-52140838 Msa0027670:intron 40.0%
TTTGTTCGTGTCTTGGATCT+CGG + chr1_1:52140847-52140866 None:intergenic 40.0%
GAACCACCGTCTAAAAAACA+TGG - chr1_1:52140893-52140912 Msa0027670:intron 40.0%
!!! TGTCCATGTTTTTTAGACGG+TGG + chr1_1:52140899-52140918 None:intergenic 40.0%
TTCCAAGATGTAAAGGATGG+TGG + chr1_1:52140961-52140980 None:intergenic 40.0%
GTGTTCCAAGATGTAAAGGA+TGG + chr1_1:52140964-52140983 None:intergenic 40.0%
TCCTTTACATCTTGGAACAC+AGG - chr1_1:52140964-52140983 Msa0027670:intron 40.0%
CCTTTACATCTTGGAACACA+GGG - chr1_1:52140965-52140984 Msa0027670:intron 40.0%
! TTTTGTTAGAGAGAGGTCAG+TGG - chr1_1:52141019-52141038 Msa0027670:intron 40.0%
TCTCCTCCTATTACACATAG+TGG + chr1_1:52141581-52141600 None:intergenic 40.0%
CAGCCGTTGGATTAATCTAA+TGG + chr1_1:52141950-52141969 None:intergenic 40.0%
TTAATCCAACGGCTGAGAAT+AGG - chr1_1:52141955-52141974 Msa0027670:intron 40.0%
TAATCCAACGGCTGAGAATA+GGG - chr1_1:52141956-52141975 Msa0027670:intron 40.0%
TATGGATAACTCCGTTGTTG+AGG - chr1_1:52141990-52142009 Msa0027670:intron 40.0%
GGAAATTGGATCCTCAACAA+CGG + chr1_1:52142004-52142023 None:intergenic 40.0%
AACTAGTTGCCTATGAAGAG+AGG - chr1_1:52143514-52143533 Msa0027670:intron 40.0%
GTGAGGTAAATGTATGTACC+CGG + chr1_1:52143548-52143567 None:intergenic 40.0%
GTACATACATTTACCTCACG+TGG - chr1_1:52143549-52143568 Msa0027670:intron 40.0%
AGTAGCAAATCGGATTTGCA+AGG + chr1_1:52143604-52143623 None:intergenic 40.0%
CGATTAATATTGTGAGACGG+AGG + chr1_1:52143628-52143647 None:intergenic 40.0%
ACGCCCTTATTAATTGTAGC+TGG - chr1_1:52143726-52143745 Msa0027670:intron 40.0%
! TGACACCTAATTTGAGACTG+TGG + chr1_1:52143937-52143956 None:intergenic 40.0%
AGAGGTTAAACTCCCACAAT+AGG - chr1_1:52144424-52144443 Msa0027670:intron 40.0%
ACATTCGTTCGTCCTATTGT+GGG + chr1_1:52144439-52144458 None:intergenic 40.0%
AACATTCGTTCGTCCTATTG+TGG + chr1_1:52144440-52144459 None:intergenic 40.0%
TATATTAGGGTCCTGCTAAC+CGG - chr1_1:52144699-52144718 Msa0027670:intron 40.0%
AGATTCTCTCAACCTGTTTC+GGG - chr1_1:52144958-52144977 Msa0027670:intron 40.0%
! CATAGTTTTTGTCCCGAAAC+AGG + chr1_1:52144973-52144992 None:intergenic 40.0%
TAACAGAAACCATGCCTCAT+AGG - chr1_1:52145194-52145213 Msa0027670:intron 40.0%
AAAGAGGAACAACTCCTATG+AGG + chr1_1:52145211-52145230 None:intergenic 40.0%
ATCTTGGTTGTGGAACAAAG+AGG + chr1_1:52145227-52145246 None:intergenic 40.0%
!!! CAATTGTTTTGGCTCGTCTT+CGG + chr1_1:52145362-52145381 None:intergenic 40.0%
CGAGCCAAAACAATTGATGT+TGG - chr1_1:52145366-52145385 Msa0027670:intron 40.0%
TAGGTGTGAGAAAAAGACCT+TGG - chr1_1:52145458-52145477 Msa0027670:CDS 40.0%
AGGTGTGAGAAAAAGACCTT+GGG - chr1_1:52145459-52145478 Msa0027670:CDS 40.0%
! CAAGCTGCATTTTCAATGAG+AGG - chr1_1:52136629-52136648 Msa0027670:CDS 40.0%
GGGAAACAAGATCAATCAGA+AGG - chr1_1:52145763-52145782 Msa0027670:CDS 40.0%
GAGATCAGAGACACAACAAG+AGG - chr1_1:52136545-52136564 Msa0027670:CDS 45.0%
ATCAGAGACACAACAAGAGG+AGG - chr1_1:52136548-52136567 Msa0027670:CDS 45.0%
ACACAACAAGAGGAGGAAGA+AGG - chr1_1:52136555-52136574 Msa0027670:CDS 45.0%
CACAACAAGAGGAGGAAGAA+GGG - chr1_1:52136556-52136575 Msa0027670:CDS 45.0%
! CTCTCTTTTAGTGCAAGTGC+AGG + chr1_1:52136740-52136759 None:intergenic 45.0%
CTGCACTTGCACTAAAAGAG+AGG - chr1_1:52136738-52136757 Msa0027670:CDS 45.0%
AGGGAAACAGGATCAATCAG+AGG - chr1_1:52136808-52136827 Msa0027670:CDS 45.0%
GGGAAACAGGATCAATCAGA+GGG - chr1_1:52136809-52136828 Msa0027670:CDS 45.0%
ATCAGAGGGATCAAGTGTCT+TGG - chr1_1:52136823-52136842 Msa0027670:CDS 45.0%
CGATAGAATTAGGCGATGAG+AGG + chr1_1:52137688-52137707 None:intergenic 45.0%
CCCTCGTGACCTAACATTTA+AGG + chr1_1:52137823-52137842 None:intergenic 45.0%
TGATGTCTCTCTCACTTGTG+TGG + chr1_1:52137870-52137889 None:intergenic 45.0%
CGAAAGACCAACAGCCTATT+TGG - chr1_1:52138819-52138838 Msa0027670:intron 45.0%
!!! GGCGTTTGTTGTTTTGTTGG+AGG - chr1_1:52138885-52138904 Msa0027670:intron 45.0%
!! GGGTGGACTAAACATAGTGT+GGG + chr1_1:52139010-52139029 None:intergenic 45.0%
!! TGGGTGGACTAAACATAGTG+TGG + chr1_1:52139011-52139030 None:intergenic 45.0%
!!! ACCCATTTTGGTTGATCTGG+TGG + chr1_1:52139204-52139223 None:intergenic 45.0%
GGATGCATATTGTATGCACC+AGG - chr1_1:52139468-52139487 Msa0027670:intron 45.0%
TGCAAACAGCTCTATAGAGC+TGG - chr1_1:52139507-52139526 Msa0027670:intron 45.0%
GCAAACAGCTCTATAGAGCT+GGG - chr1_1:52139508-52139527 Msa0027670:intron 45.0%
! CACACGTGTGTTTTACCACT+AGG + chr1_1:52139643-52139662 None:intergenic 45.0%
GGCCGTTCTTAAAAAATCGG+AGG + chr1_1:52140094-52140113 None:intergenic 45.0%
!!! CGATTTTTTAAGAACGGCCC+AGG - chr1_1:52140095-52140114 Msa0027670:intron 45.0%
CGACTACATGATTGCATACC+TGG + chr1_1:52140116-52140135 None:intergenic 45.0%
AAATGCTAACTAGTGCCCCA+AGG - chr1_1:52140395-52140414 Msa0027670:intron 45.0%
AATGCTAACTAGTGCCCCAA+GGG - chr1_1:52140396-52140415 Msa0027670:intron 45.0%
GGATGCTTAACCAATACCCT+TGG + chr1_1:52140415-52140434 None:intergenic 45.0%
AACACACAACGATTCACGCA+AGG - chr1_1:52140665-52140684 Msa0027670:intron 45.0%
GCAAGGAATCCATAACGAGT+GGG - chr1_1:52140682-52140701 Msa0027670:intron 45.0%
CAAGGAATCCATAACGAGTG+GGG - chr1_1:52140683-52140702 Msa0027670:intron 45.0%
AGCGTGCTAGAGAGTTCAAA+AGG - chr1_1:52140710-52140729 Msa0027670:intron 45.0%
GAAACTCACCTATGAGCAAC+AGG - chr1_1:52140818-52140837 Msa0027670:intron 45.0%
! CAAGATGTAAAGGATGGTGG+CGG + chr1_1:52140958-52140977 None:intergenic 45.0%
CCCTGTGTTCCAAGATGTAA+AGG + chr1_1:52140968-52140987 None:intergenic 45.0%
CATCTTGGAACACAGGGATT+TGG - chr1_1:52140971-52140990 Msa0027670:intron 45.0%
! AACACAGGGATTTGGAACAG+AGG - chr1_1:52140979-52140998 Msa0027670:intron 45.0%
! ACACAGGGATTTGGAACAGA+GGG - chr1_1:52140980-52140999 Msa0027670:intron 45.0%
GCTTCGCCACTATGTGTAAT+AGG - chr1_1:52141572-52141591 Msa0027670:intron 45.0%
TCGCCACTATGTGTAATAGG+AGG - chr1_1:52141575-52141594 Msa0027670:intron 45.0%
AATAGGGCAGTAGGAAGCTA+TGG - chr1_1:52141972-52141991 Msa0027670:intron 45.0%
TTTAGAGAGTTTGGTTGGGG+AGG + chr1_1:52142260-52142279 None:intergenic 45.0%
TGACATGGTCACACTCACAT+GGG + chr1_1:52142321-52142340 None:intergenic 45.0%
ATGACATGGTCACACTCACA+TGG + chr1_1:52142322-52142341 None:intergenic 45.0%
TCACTTTCCCTTAGCCCTAA+AGG + chr1_1:52142371-52142390 None:intergenic 45.0%
ATTTATGGGACGGAAGGAGT+AGG + chr1_1:52142629-52142648 None:intergenic 45.0%
GCAATTCCTTGTCTTCCTGA+CGG - chr1_1:52143067-52143086 Msa0027670:intron 45.0%
TATCAACCGTCAGGAAGACA+AGG + chr1_1:52143076-52143095 None:intergenic 45.0%
GAAAACAAGTGGGGGAAGAT+AGG - chr1_1:52143450-52143469 Msa0027670:intron 45.0%
AGGTAAATGTATGTACCCGG+TGG + chr1_1:52143545-52143564 None:intergenic 45.0%
!! AGTGGGGCACCTTTAATTTG+AGG - chr1_1:52145093-52145112 Msa0027670:intron 45.0%
TTTGGATACAACCTGCAGTG+AGG - chr1_1:52145132-52145151 Msa0027670:intron 45.0%
TATTGGTCAAACCTCACTGC+AGG + chr1_1:52145146-52145165 None:intergenic 45.0%
! TTTGGCTCGTCTTCGGTAAT+TGG + chr1_1:52145355-52145374 None:intergenic 45.0%
GGTGTGAGAAAAAGACCTTG+GGG - chr1_1:52145460-52145479 Msa0027670:CDS 45.0%
GAGATCAGAGACACAACAAG+AGG - chr1_1:52136545-52136564 Msa0027670:CDS 45.0%
ATCAGAGACACAACAAGAGG+AGG - chr1_1:52136548-52136567 Msa0027670:CDS 45.0%
ACACAACAAGAGGAGGAAGA+AGG - chr1_1:52136555-52136574 Msa0027670:CDS 45.0%
CACAACAAGAGGAGGAAGAA+GGG - chr1_1:52136556-52136575 Msa0027670:CDS 45.0%
! TAGTGCTGAAGATGCTGCTT+TGG - chr1_1:52136598-52136617 Msa0027670:CDS 45.0%
!!! AAAAAATTGTATTTTTTTTA+GGG - chr1_1:52140043-52140062 Msa0027670:intron 5.0%
!! TTAAATAACTATAATAAAAA+GGG + chr1_1:52140606-52140625 None:intergenic 5.0%
!! ATTAAATAACTATAATAAAA+AGG + chr1_1:52140607-52140626 None:intergenic 5.0%
!!! AATAAATAATATTATTTTTC+TGG - chr1_1:52145022-52145041 Msa0027670:intron 5.0%
TCTGCAGCAAATTTCCCCCA+AGG + chr1_1:52136527-52136546 None:intergenic 50.0%
CAAGAGGAGGAAGAAGGGTT+TGG - chr1_1:52136561-52136580 Msa0027670:CDS 50.0%
! GGAGGAAGAAGGGTTTGGTT+AGG - chr1_1:52136566-52136585 Msa0027670:CDS 50.0%
GCGATGAGAGGTAGCTCAAA+AGG + chr1_1:52137676-52137695 None:intergenic 50.0%
GGTTGCTCTAGCCTAGATGT+AGG + chr1_1:52137849-52137868 None:intergenic 50.0%
CGCAGTGGGAAGAGAAGAAT+GGG - chr1_1:52138935-52138954 Msa0027670:intron 50.0%
GTTTCGTGTTCGACTCTCAC+AGG - chr1_1:52138957-52138976 Msa0027670:intron 50.0%
! TCAGTGAAGGTGTGTCCTAG+TGG - chr1_1:52139625-52139644 Msa0027670:intron 50.0%
! AACTAGTGCCCCAAGGGTAT+TGG - chr1_1:52140402-52140421 Msa0027670:intron 50.0%
TGCCCTCAGGACAATGGTTA+AGG + chr1_1:52140532-52140551 None:intergenic 50.0%
TCTTGTTAACCAGTGCCCTC+AGG + chr1_1:52140545-52140564 None:intergenic 50.0%
CGCAAGGAATCCATAACGAG+TGG - chr1_1:52140681-52140700 Msa0027670:intron 50.0%
TGGACAAGAGGTGATGCGAA+TGG - chr1_1:52140913-52140932 Msa0027670:intron 50.0%
CGCCACCATCCTTTACATCT+TGG - chr1_1:52140956-52140975 Msa0027670:intron 50.0%
! AGGGATTTGGAACAGAGGGA+AGG - chr1_1:52140984-52141003 Msa0027670:intron 50.0%
! GATTTGGAACAGAGGGAAGG+CGG - chr1_1:52140987-52141006 Msa0027670:intron 50.0%
ATTAGCTGAACTTGAGGCCC+CGG + chr1_1:52143047-52143066 None:intergenic 50.0%
!! CTGGCTTTGTATCAACCGTC+AGG + chr1_1:52143085-52143104 None:intergenic 50.0%
AGACGGAGGGAGTAGCAAAT+CGG + chr1_1:52143614-52143633 None:intergenic 50.0%
TATCCTTAACCAGTGCCCAG+AGG - chr1_1:52144851-52144870 Msa0027670:intron 50.0%
AATGCTAACCGGTGTCCTCT+GGG + chr1_1:52144869-52144888 None:intergenic 50.0%
AAATGCTAACCGGTGTCCTC+TGG + chr1_1:52144870-52144889 None:intergenic 50.0%
GGAACAACTCCTATGAGGCA+TGG + chr1_1:52145206-52145225 None:intergenic 50.0%
TCAGCTGCATACTTTCCCCA+AGG + chr1_1:52145478-52145497 None:intergenic 50.0%
CAAGAGGAGGAAGAAGGGTT+TGG - chr1_1:52136561-52136580 Msa0027670:CDS 50.0%
TTCACCTGCACTTGCACTCA+AGG - chr1_1:52145684-52145703 Msa0027670:intron 50.0%
GTTCTCTACTCTTTGCCCCG+TGG - chr1_1:52137963-52137982 Msa0027670:intron 55.0%
! AGGGTTTAAAGGAGGCGCAG+TGG - chr1_1:52138920-52138939 Msa0027670:intron 55.0%
! GGGTTTAAAGGAGGCGCAGT+GGG - chr1_1:52138921-52138940 Msa0027670:intron 55.0%
GCGCAGTGGGAAGAGAAGAA+TGG - chr1_1:52138934-52138953 Msa0027670:intron 55.0%
! AGCTGGGCCTCCCCAATTTT+GGG - chr1_1:52139524-52139543 Msa0027670:intron 55.0%
TTTGGGCCCCAAAATTGGGG+AGG + chr1_1:52139534-52139553 None:intergenic 55.0%
CGGTTCAACTGCCCTTGTGA+TGG - chr1_1:52139679-52139698 Msa0027670:intron 55.0%
! AACCATTGTCCTGAGGGCAC+TGG - chr1_1:52140533-52140552 Msa0027670:intron 55.0%
AACCAGTGCCCTCAGGACAA+TGG + chr1_1:52140538-52140557 None:intergenic 55.0%
GAACAGAGGGAAGGCGGTTT+GGG - chr1_1:52140993-52141012 Msa0027670:intron 55.0%
ACTGCCCTATTCTCAGCCGT+TGG + chr1_1:52141963-52141982 None:intergenic 55.0%
ACGGCTGAGAATAGGGCAGT+AGG - chr1_1:52141963-52141982 Msa0027670:intron 55.0%
ATGGTCACACTCACATGGGC+TGG + chr1_1:52142317-52142336 None:intergenic 55.0%
TATGCTTAACCAGTGCCCCG+GGG + chr1_1:52144728-52144747 None:intergenic 55.0%
GTATGCTTAACCAGTGCCCC+GGG + chr1_1:52144729-52144748 None:intergenic 55.0%
GGTATGCTTAACCAGTGCCC+CGG + chr1_1:52144730-52144749 None:intergenic 55.0%
!! TGTCCTCTGGGCACTGGTTA+AGG + chr1_1:52144857-52144876 None:intergenic 55.0%
GGAGGAAGAAGGGTTTGGCT+AGG - chr1_1:52145517-52145536 Msa0027670:CDS 55.0%
CTCTCCTTGAGTGCAAGTGC+AGG + chr1_1:52145691-52145710 None:intergenic 55.0%
CACGAGGGGAGCCTACATCT+AGG - chr1_1:52137835-52137854 Msa0027670:intron 60.0%
TATGCACCAGGGCTGTCCCT+GGG - chr1_1:52139480-52139499 Msa0027670:intron 60.0%
GAGCTGTTTGCACCTCCCCA+GGG + chr1_1:52139499-52139518 None:intergenic 60.0%
AGAGCTGTTTGCACCTCCCC+AGG + chr1_1:52139500-52139519 None:intergenic 60.0%
! GAGCTGGGCCTCCCCAATTT+TGG - chr1_1:52139523-52139542 Msa0027670:intron 60.0%
! GCTGGGCCTCCCCAATTTTG+GGG - chr1_1:52139525-52139544 Msa0027670:intron 60.0%
CGCTCTCTCCCCACTCGTTA+TGG + chr1_1:52140694-52140713 None:intergenic 60.0%
CTCGGAGCCCTGTTGCTCAT+AGG + chr1_1:52140829-52140848 None:intergenic 60.0%
GGAACAGAGGGAAGGCGGTT+TGG - chr1_1:52140992-52141011 Msa0027670:intron 60.0%
GTGGCGCAGCCTCTCTTCAT+AGG + chr1_1:52143526-52143545 None:intergenic 60.0%
ATGAAGAGAGGCTGCGCCAC+CGG - chr1_1:52143526-52143545 Msa0027670:intron 60.0%
ATGCTTAACCAGTGCCCCGG+GGG + chr1_1:52144727-52144746 None:intergenic 60.0%
AACCAGTGCCCAGAGGACAC+CGG - chr1_1:52144858-52144877 Msa0027670:intron 60.0%
GTATGCACCAGGGCTGTCCC+TGG - chr1_1:52139479-52139498 Msa0027670:intron 65.0%
ATGCACCAGGGCTGTCCCTG+GGG - chr1_1:52139481-52139500 Msa0027670:intron 65.0%
! GGTGGCGGTGATGCGATGGT+GGG + chr1_1:52140943-52140962 None:intergenic 65.0%
!! TGGTGGCGGTGATGCGATGG+TGG + chr1_1:52140944-52140963 None:intergenic 65.0%
!! GGATGGTGGCGGTGATGCGA+TGG + chr1_1:52140947-52140966 None:intergenic 65.0%
TGAAGAGAGGCTGCGCCACC+GGG - chr1_1:52143527-52143546 Msa0027670:intron 65.0%
AACCGGTGTCCTCTGGGCAC+TGG + chr1_1:52144863-52144882 None:intergenic 65.0%
GTCCTGCTAACCGGTGCCCC+CGG - chr1_1:52144708-52144727 Msa0027670:intron 70.0%
TCCTGCTAACCGGTGCCCCC+GGG - chr1_1:52144709-52144728 Msa0027670:intron 70.0%
CACCAGGGCTGTCCCTGGGG+AGG - chr1_1:52139484-52139503 Msa0027670:intron 75.0%
CACCTCCCCAGGGACAGCCC+TGG + chr1_1:52139489-52139508 None:intergenic 75.0%
CCTGCTAACCGGTGCCCCCG+GGG - chr1_1:52144710-52144729 Msa0027670:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr1_1:52144721-52144740 None:intergenic 75.0%
!!! CCCCGGGGGCACCGGTTAGC+AGG + chr1_1:52144713-52144732 None:intergenic 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr1_1:52144716-52144735 Msa0027670:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 52136512 52145876 52136512 ID=Msa0027670;Name=Msa0027670
chr1_1 mRNA 52136512 52145876 52136512 ID=Msa0027670-mRNA-1;Parent=Msa0027670;Name=Msa0027670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|3|0|352
chr1_1 exon 52145738 52145876 52145738 ID=Msa0027670-mRNA-1:exon:15321;Parent=Msa0027670-mRNA-1
chr1_1 exon 52145456 52145695 52145456 ID=Msa0027670-mRNA-1:exon:15320;Parent=Msa0027670-mRNA-1
chr1_1 exon 52136512 52137188 52136512 ID=Msa0027670-mRNA-1:exon:15319;Parent=Msa0027670-mRNA-1
chr1_1 CDS 52145738 52145876 52145738 ID=Msa0027670-mRNA-1:cds;Parent=Msa0027670-mRNA-1
chr1_1 CDS 52145456 52145695 52145456 ID=Msa0027670-mRNA-1:cds;Parent=Msa0027670-mRNA-1
chr1_1 CDS 52136512 52137188 52136512 ID=Msa0027670-mRNA-1:cds;Parent=Msa0027670-mRNA-1
Gene Sequence

>Msa0027670

GTGAGGAAAAGACCTTGGGGGAAATTTGCTGCAGAGATCAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGTTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGATCTTCACCTGCACTTGCACTAAAAGAGAGGCACTATGAACAAAGAAAGATGTTATCAAAAGGTGTAAAAAATAAAGCAGGGAAACAGGATCAATCAGAGGGATCAAGTGTCTTGGTGTTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTCTAACAATATCTGATAATCAAAGTACAAGCAGCAACAAGTTCAAATCAAAAACCATGCCTCATAGGAGTTGTTCCTCTTTGTTCCACAACCAAGATATAGAAATGCTGCAAGGCCCTTCAGAAATTTCCTTTGAATCATTTGGTATTAATCATGATTTTCTTTCCTTTGATATGATCGATTTCTCATCGAGTTCGCAGACACCAATTACCGAAGACGAGCCAAAACAATTGATGTTGGAGTCATCATCATCTGAAGCAAAAGAAGTATTGCAGAATAATACTAAGATGGATCAAAAGTCATCATATATAGGTGTGAGAAAAAGACCTTGGGGAAAGTATGCAGCTGAGATCAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGCTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAGAAGGGTCTTCACCTGCACTTGCACTCAAGGAGAGACACTGTGAACAAAGAAAGATGTCATCAAAAGGTGTAAACAATAATAAAGCAGGGAAACAAGATCAATCAGAAGGATCAAGTGTTTTGGTGTTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTCTAACAATATCTGATAATCAAAGTACAAGCAGCAACAGC
Protein sequence

>Msa0027670

VRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRESLQEIQYDCRKGSSPALALKERHYEQRKMLSKGVKNKAGKQDQSEGSSVLVLEDLGVEYLEQLLTISDNQSTSSNKFKSKTMPHRSCSSLFHNQDIEMLQGPSEISFESFGINHDFLSFDMIDFSSSSQTPITEDEPKQLMLESSSSEAKEVLQNNTKMDQKSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFSVQRVKESLQEIQYDCREGSSPALALKERHCEQRKMSSKGVNNNKAGKQDQSEGSSVLVLEDLGVEYLEQLLTISDNQSTSSNS