AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123890 MtrunA17_Chr1g0184751 96.948 426 13 0 1 426 174 599 0.0 884
Msa0123890 MtrunA17_Chr7g0260711 71.596 426 117 3 2 425 230 653 0.0 649
Msa0123890 MtrunA17_Chr2g0290961 44.667 450 219 6 2 426 223 667 4.43e-143 423
Msa0123890 MtrunA17_Chr8g0351091 44.592 453 217 6 1 424 163 610 4.75e-140 413
Msa0123890 MtrunA17_Chr8g0383241 42.472 445 229 6 2 424 50 489 1.57e-134 395
Msa0123890 MtrunA17_Chr7g0246371 44.568 451 218 7 1 424 217 662 3.40e-133 397
Msa0123890 MtrunA17_Chr3g0138381 41.630 454 231 6 1 425 216 664 3.37e-124 374
Msa0123890 MtrunA17_Chr2g0283461 39.121 455 240 10 1 424 84 532 3.45e-105 321
Msa0123890 MtrunA17_Chr4g0061711 37.719 456 244 11 1 424 87 534 7.23e-97 300
Msa0123890 MtrunA17_Chr2g0308241 36.443 461 243 12 1 424 87 534 3.30e-95 296
Msa0123890 MtrunA17_Chr2g0277591 35.622 466 219 11 1 425 84 509 5.65e-89 279
Msa0123890 MtrunA17_Chr6g0456071 40.616 357 180 6 95 424 202 553 4.08e-86 273
Msa0123890 MtrunA17_Chr7g0235161 36.298 416 226 7 40 424 151 558 2.10e-84 268
Msa0123890 MtrunA17_Chr2g0319311 33.582 402 222 6 66 425 142 540 8.51e-81 258
Msa0123890 MtrunA17_Chr7g0218571 33.333 399 227 4 66 425 138 536 3.22e-78 252
Msa0123890 MtrunA17_Chr4g0076011 29.742 427 248 6 49 425 48 472 1.06e-73 238
Msa0123890 MtrunA17_Chr3g0097091 32.225 391 233 5 66 424 138 528 2.97e-70 231
Msa0123890 MtrunA17_Chr7g0245621 34.253 435 252 9 11 424 222 643 1.22e-69 232
Msa0123890 MtrunA17_Chr6g0454101 31.328 399 233 5 66 424 133 530 6.14e-67 222
Msa0123890 MtrunA17_Chr4g0076331 40.887 203 85 4 227 426 4 174 7.55e-46 156
Msa0123890 MtrunA17_Chr7g0259321 25.556 180 124 6 225 399 151 325 9.26e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123890 AT1G06780.1 54.907 428 187 5 2 425 163 588 2.63e-169 488
Msa0123890 AT1G06780.2 54.907 428 187 5 2 425 176 601 5.26e-169 487
Msa0123890 AT2G30575.1 54.801 427 186 5 2 424 185 608 4.42e-165 478
Msa0123890 AT5G47780.1 45.778 450 214 7 2 426 172 616 4.41e-147 432
Msa0123890 AT3G61130.1 45.455 451 215 7 1 425 227 672 8.07e-146 431
Msa0123890 AT4G38270.2 42.232 457 226 7 1 424 223 674 4.40e-129 388
Msa0123890 AT4G38270.1 42.232 457 226 7 1 424 227 678 6.23e-129 387
Msa0123890 AT2G46480.3 42.035 452 228 8 1 424 93 538 1.24e-120 362
Msa0123890 AT2G46480.4 42.035 452 228 8 1 424 106 551 2.21e-120 361
Msa0123890 AT1G18580.1 39.606 457 232 11 1 422 87 534 8.74e-106 323
Msa0123890 AT2G46480.2 38.496 452 219 7 1 424 93 513 4.61e-105 321
Msa0123890 AT2G46480.1 38.496 452 219 7 1 424 106 526 8.59e-105 320
Msa0123890 AT3G25140.1 37.500 416 221 7 40 424 150 557 3.07e-94 294
Msa0123890 AT2G20810.1 37.691 459 243 12 1 424 85 535 1.55e-92 289
Msa0123890 AT3G02350.1 41.039 385 192 7 70 424 180 559 2.13e-87 276
Msa0123890 AT5G54690.1 32.126 414 235 7 55 425 123 533 8.56e-76 246
Msa0123890 AT3G01040.2 33.827 405 215 6 66 424 133 530 3.13e-75 244
Msa0123890 AT3G01040.3 33.827 405 215 6 66 424 133 530 3.13e-75 244
Msa0123890 AT5G15470.1 33.915 401 220 6 66 424 133 530 5.21e-75 243
Msa0123890 AT2G38650.2 33.102 432 260 7 11 426 201 619 8.96e-71 234
Msa0123890 AT2G38650.1 33.102 432 260 7 11 426 201 619 8.96e-71 234
Msa0123890 AT3G01040.1 35.561 374 217 7 66 424 133 497 9.60e-70 229
Msa0123890 AT3G58790.2 32.658 395 228 5 68 424 12 406 3.57e-67 219
Msa0123890 AT3G58790.1 31.151 443 260 8 25 424 98 538 2.29e-66 221
Msa0123890 AT2G38650.3 33.333 336 196 6 11 330 201 524 5.73e-49 174
Msa0123890 AT4G02130.3 25.248 202 134 8 225 416 150 344 4.30e-11 64.3
Msa0123890 AT4G02130.1 25.248 202 134 8 225 416 150 344 4.30e-11 64.3
Msa0123890 AT4G02130.2 25.248 202 134 8 225 416 150 344 4.30e-11 64.3
Msa0123890 AT3G28340.1 26.203 187 128 7 223 403 153 335 6.86e-11 63.9
Msa0123890 AT1G24170.1 28.492 179 117 8 231 403 178 351 7.69e-11 63.9

Find 160 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGATCGCGATCTTATTT+AGG 0.135549 1_3:-51229760 None:intergenic
TCTTGATTGTAACTGTAAAT+TGG 0.179152 1_3:-51230926 None:intergenic
GCTTTCTCTCCTCAGGTCTT+AGG 0.196768 1_3:-51227859 None:intergenic
CTGAGAAGCCATTGTGGAAT+TGG 0.276701 1_3:+51230520 Msa0123890:CDS
TTCCAGACCTTTCTAACCTT+TGG 0.296850 1_3:-51231309 None:intergenic
AACTTCTCAGATCCACTAAT+TGG 0.304609 1_3:+51229911 Msa0123890:CDS
TCTTTATAAACAACTCGATT+AGG 0.326457 1_3:-51226480 None:intergenic
GACAGACGATGGCACATTCT+TGG 0.326783 1_3:+51230600 Msa0123890:CDS
TGGGCAGATATAAAGGTTAT+TGG 0.329741 1_3:+51230718 Msa0123890:CDS
CCTTGTCTTGTCTTTCATCA+TGG 0.334021 1_3:-51226712 None:intergenic
TGAGAGAATCAGTCACTATA+TGG 0.342627 1_3:-51229550 None:intergenic
AAAGATCGCGATCTTATTTA+GGG 0.343393 1_3:-51229759 None:intergenic
AATTCTTGCACATGGGCATT+TGG 0.348346 1_3:+51229950 Msa0123890:CDS
AATATGAATGGAAATGTTAA+TGG 0.354360 1_3:+51229830 Msa0123890:CDS
CCAAGTGTTTAATCCACTTT+GGG 0.355588 1_3:+51224908 Msa0123890:five_prime_UTR
TGTCTTCTCTGACAATGTTC+TGG 0.359748 1_3:+51227928 Msa0123890:CDS
AACCCATCCATCCTATGAAA+TGG 0.367710 1_3:-51229884 None:intergenic
CAAACAACAATGTATAGATT+TGG 0.369715 1_3:-51224817 None:intergenic
TGTTGTCCGTGCTCTGTATA+TGG 0.376017 1_3:-51229628 None:intergenic
GAGAGAGAATGAGGATCCTT+TGG 0.379513 1_3:-51224993 None:intergenic
ACAACATAATGATAAAGTTC+TGG 0.383968 1_3:-51227908 None:intergenic
TTTGGAAGCTTTCTCTCCTC+AGG 0.387400 1_3:-51227866 None:intergenic
AATTGCTATTGGAAAATAGT+TGG 0.394572 1_3:+51231514 Msa0123890:three_prime_UTR
TCAGTTTCACTTCTGATCTT+CGG 0.394924 1_3:-51231279 None:intergenic
TGTGGGAAACAAAGTGCATT+TGG 0.401122 1_3:-51224942 None:intergenic
TTATACACTATGACGGGATT+AGG 0.401252 1_3:+51230673 Msa0123890:CDS
ACTTCTCTTGTTGACAAGTC+TGG 0.402926 1_3:+51230818 Msa0123890:three_prime_UTR
CGATGGCACATTCTTGGCCT+TGG 0.404899 1_3:+51230606 Msa0123890:CDS
AGAATATTAAAGTGACCAAT+AGG 0.409566 1_3:+51226810 Msa0123890:five_prime_UTR
ATTGCAATGGGCAGATATAA+AGG 0.412028 1_3:+51230711 Msa0123890:CDS
CTTTCTCTCCTCAGGTCTTA+GGG 0.412099 1_3:-51227858 None:intergenic
TACCTCTGTCTTGTTATAGA+AGG 0.412461 1_3:-51230574 None:intergenic
TCCAAGTGTTTAATCCACTT+TGG 0.414394 1_3:+51224907 Msa0123890:five_prime_UTR
ACCCATCCATCCTATGAAAT+GGG 0.416043 1_3:-51229883 None:intergenic
GCTGATTCCATTCAAAATAC+AGG 0.418806 1_3:-51231474 None:intergenic
GAGATGGAGCGAGCAGTAGA+AGG 0.420360 1_3:+51227004 Msa0123890:CDS
AACAAGATCTCAGTGAACTA+TGG 0.424180 1_3:+51229801 Msa0123890:CDS
ATCAATTCAGAAGTGTATCT+TGG 0.427173 1_3:-51229701 None:intergenic
GAAGTTAAATGCTATACAAC+AGG 0.427182 1_3:+51226306 Msa0123890:five_prime_UTR
TCAAAACTCTCTCCAATTAG+TGG 0.427692 1_3:-51229923 None:intergenic
ATTTGTTTGATTTGCAAGAA+TGG 0.428382 1_3:+51229978 Msa0123890:CDS
AAGCAGCAACTCACACTTGA+AGG 0.430551 1_3:+51226961 Msa0123890:CDS
AACGTTGCACGTATGCCTTT+AGG 0.436855 1_3:+51230543 Msa0123890:CDS
CCCAAAGTGGATTAAACACT+TGG 0.437925 1_3:-51224908 None:intergenic
TATTCGACCTGATGGCCTAT+TGG 0.440562 1_3:-51226825 None:intergenic
AAGGCAAAACCCCATTTCAT+AGG 0.441660 1_3:+51229873 Msa0123890:CDS
CAACACGATACAAATCTTCA+AGG 0.442328 1_3:-51225149 None:intergenic
GTCATACTGGTCTTGGCTGT+TGG 0.445327 1_3:-51231221 None:intergenic
TGGAGCTGTTGGAACTTGTC+AGG 0.446021 1_3:+51229850 Msa0123890:CDS
TTCAAGTGTGAGTTGCTGCT+TGG 0.446023 1_3:-51226959 None:intergenic
TCCTTGACAAATCTGAATCC+CGG 0.452230 1_3:-51227033 None:intergenic
CTATAACAAGACAGAGGTAT+TGG 0.459722 1_3:+51230578 Msa0123890:CDS
ATTGCAGCTGTTGAAAGAAA+TGG 0.462722 1_3:+51226564 Msa0123890:five_prime_UTR
AAGTGTGAGTTGCTGCTTGG+TGG 0.469017 1_3:-51226956 None:intergenic
ATCGCGATCTTATTTAGGGC+AGG 0.474003 1_3:-51229755 None:intergenic
TTTAGGGCAGGGAAAATGTC+TGG 0.474174 1_3:-51229743 None:intergenic
ACCCCATTTCATAGGATGGA+TGG 0.477534 1_3:+51229881 Msa0123890:CDS
GAAACACAACTAGGTCATAC+TGG 0.479107 1_3:-51231234 None:intergenic
GACAAGGATGCTCAGAGAAA+AGG 0.483388 1_3:+51226728 Msa0123890:five_prime_UTR
TAGCCCCTTCAAAATATTTG+AGG 0.494391 1_3:-51231427 None:intergenic
GGAAATGTTAATGGAGCTGT+TGG 0.494988 1_3:+51229839 Msa0123890:CDS
CTATGGAATGTCAATATGAA+TGG 0.495870 1_3:+51229818 Msa0123890:CDS
AAAGTGACCAATAGGCCATC+AGG 0.496920 1_3:+51226818 Msa0123890:five_prime_UTR
TTAATCTTTACATGGTGGAA+AGG 0.497110 1_3:+51231177 Msa0123890:three_prime_UTR
TAGGGTTTAAAATATGATGA+TGG 0.498279 1_3:-51226853 None:intergenic
GAAAGAGAAGAGAGAGAATG+AGG 0.498527 1_3:-51225002 None:intergenic
CAACTAGGTCATACTGGTCT+TGG 0.498962 1_3:-51231228 None:intergenic
ATGGAGGAGACATAATTTAA+CGG 0.499624 1_3:+51229997 Msa0123890:CDS
AACCAAAGGTTAGAAAGGTC+TGG 0.501041 1_3:+51231307 Msa0123890:three_prime_UTR
CCCCATTTCATAGGATGGAT+GGG 0.501331 1_3:+51229882 Msa0123890:CDS
AATTTCACGTGGTTGTGCTA+TGG 0.501545 1_3:+51231402 Msa0123890:three_prime_UTR
AGCCCCTTCAAAATATTTGA+GGG 0.502484 1_3:-51231426 None:intergenic
ACAAATCAGAATAGAGATGA+TGG 0.502718 1_3:+51231110 Msa0123890:three_prime_UTR
CAACTCACACTTGAAGGAGC+TGG 0.503586 1_3:+51226967 Msa0123890:CDS
TTTAATCTTTAATCTTTACA+TGG 0.508998 1_3:+51231169 Msa0123890:three_prime_UTR
CTATCACAAATATTCACAAA+TGG 0.520254 1_3:+51230024 Msa0123890:CDS
ATTTATATCTTTGTCTGTGG+AGG 0.522520 1_3:-51226756 None:intergenic
CAAAACCCCATTTCATAGGA+TGG 0.524264 1_3:+51229877 Msa0123890:CDS
AGATTGCACTGTTGTAGAAA+AGG 0.524597 1_3:-51230765 None:intergenic
TACATTTATATCTTTGTCTG+TGG 0.525880 1_3:-51226759 None:intergenic
TTGATGTCAATTCTTGCACA+TGG 0.528241 1_3:+51229942 Msa0123890:CDS
ATATGGACTGTAGCATTGCC+AGG 0.529887 1_3:-51229611 None:intergenic
ATATGGAAAACAAGTTTCCC+TGG 0.530317 1_3:-51229533 None:intergenic
CTTGGCCTTGGTCATAACTC+AGG 0.533544 1_3:+51230618 Msa0123890:CDS
ACAACAATGTATAGATTTGG+AGG 0.535668 1_3:-51224814 None:intergenic
CCTTGACAAATCTGAATCCC+GGG 0.535841 1_3:-51227032 None:intergenic
TTGTCGAAATACAATACCTT+CGG 0.540831 1_3:+51229659 Msa0123890:CDS
CCATGGTTAGATATTGCAAT+GGG 0.541359 1_3:+51230699 Msa0123890:CDS
AGCAGTAGAAGGAGCCACCC+GGG 0.545071 1_3:+51227015 Msa0123890:CDS
AACATAGTGCAGCTCCTGGT+TGG 0.546305 1_3:-51231067 None:intergenic
GGGCAGGGAAAATGTCTGGC+AGG 0.546820 1_3:-51229739 None:intergenic
GTAAAACATAGTGCAGCTCC+TGG 0.548078 1_3:-51231071 None:intergenic
GAGCAGTAGAAGGAGCCACC+CGG 0.548752 1_3:+51227014 Msa0123890:CDS
TGCTTGAAGCTTAGAAGCCA+CGG 0.549312 1_3:-51227705 None:intergenic
AAAGCTTCATAATGAAAGTG+TGG 0.551789 1_3:-51224960 None:intergenic
TGTTTGATTTGCAAGAATGG+AGG 0.553127 1_3:+51229981 Msa0123890:CDS
AGAAAAGAATAGTGATGATG+AGG 0.553449 1_3:+51226533 Msa0123890:five_prime_UTR
GGAGCTGCAAATGAAAGAGA+TGG 0.558459 1_3:+51226988 Msa0123890:CDS
ACAGCAACCAAAGGTTAGAA+AGG 0.558526 1_3:+51231302 Msa0123890:three_prime_UTR
TGATCGAAATGAGATTGAGC+AGG 0.561780 1_3:+51230644 Msa0123890:CDS
TGGTTCTTGATAAACTCTCC+TGG 0.562596 1_3:+51229593 Msa0123890:CDS
CCCGGGATTCAGATTTGTCA+AGG 0.564761 1_3:+51227032 Msa0123890:CDS
AGACTTGTCAACAAGAGAAG+TGG 0.567472 1_3:-51230816 None:intergenic
TCGCGATCTTATTTAGGGCA+GGG 0.569637 1_3:-51229754 None:intergenic
AAGAACCACATCGAGATCGC+TGG 0.569850 1_3:-51229578 None:intergenic
GATTATTACCAATGATACCA+TGG 0.572349 1_3:+51231598 Msa0123890:three_prime_UTR
CCATGATGAAAGACAAGACA+AGG 0.573568 1_3:+51226712 Msa0123890:five_prime_UTR
ATCTTGTTAATCTTGCTGTA+CGG 0.573599 1_3:+51227780 Msa0123890:CDS
AAGGTCTGGAATGGCTGAAG+AGG 0.577874 1_3:+51231321 Msa0123890:three_prime_UTR
AAGGTTAGAAAGGTCTGGAA+TGG 0.578620 1_3:+51231312 Msa0123890:three_prime_UTR
CTGCCGTTATACACTATGAC+GGG 0.579505 1_3:+51230667 Msa0123890:CDS
GATTGCACTGTTGTAGAAAA+GGG 0.583622 1_3:-51230764 None:intergenic
AATCCCGTCATAGTGTATAA+CGG 0.587396 1_3:-51230670 None:intergenic
AGAGCACGGACAACATTGAA+TGG 0.589488 1_3:+51229636 Msa0123890:CDS
CTCTACTGTCTCAACTGCCA+AGG 0.590476 1_3:+51227970 Msa0123890:CDS
TGGTCTGCTATTCGACCTGA+TGG 0.590493 1_3:-51226833 None:intergenic
TTGCACGTATGCCTTTAGGT+TGG 0.590711 1_3:+51230547 Msa0123890:CDS
AATGTAAATGATGTTGCGCA+TGG 0.595514 1_3:+51226776 Msa0123890:five_prime_UTR
CTGATTCCATTCAAAATACA+GGG 0.596918 1_3:-51231473 None:intergenic
AAGCTTCATAATGAAAGTGT+GGG 0.598212 1_3:-51224959 None:intergenic
TAGAAGGTGAGCCAACCTAA+AGG 0.602239 1_3:-51230558 None:intergenic
AGAATACCTAGGAAAATGAG+AGG 0.603174 1_3:-51225039 None:intergenic
GCTGTTGGAACTTGTCAGGA+AGG 0.606703 1_3:+51229854 Msa0123890:CDS
AATCTTTAATCTTTACATGG+TGG 0.607523 1_3:+51231172 Msa0123890:three_prime_UTR
CCAGAAAATGAAACACAACT+AGG 0.608098 1_3:-51231243 None:intergenic
TTCTGTCTCAGACTGTTCCG+TGG 0.608134 1_3:+51227688 Msa0123890:CDS
GCCATGGTTAGATATTGCAA+TGG 0.619894 1_3:+51230698 Msa0123890:CDS
GCCCCTTCAAAATATTTGAG+GGG 0.626741 1_3:-51231425 None:intergenic
TACAGTCCATATACAGAGCA+CGG 0.627502 1_3:+51229622 Msa0123890:CDS
TGATGTCAATTCTTGCACAT+GGG 0.632122 1_3:+51229943 Msa0123890:CDS
GAAAATGAGAGGAGCAACGA+GGG 0.633370 1_3:-51225028 None:intergenic
ACTTTCACTGTCTTTCTATG+CGG 0.633407 1_3:+51227816 Msa0123890:CDS
CCCATTGCAATATCTAACCA+TGG 0.634878 1_3:-51230699 None:intergenic
TTGATTGCAGACATACAGGA+CGG 0.636854 1_3:+51226276 Msa0123890:intron
CGCGATCTTTGATCATGATG+TGG 0.638181 1_3:+51229772 Msa0123890:CDS
ATGACGGGATTAGGAAGCCA+TGG 0.638334 1_3:+51230682 Msa0123890:CDS
CCCATCCATCCTATGAAATG+GGG 0.639494 1_3:-51229882 None:intergenic
TGAAACTGAACAGCAACCAA+AGG 0.641879 1_3:+51231293 Msa0123890:three_prime_UTR
ACTTGCCAGCGATCTCGATG+TGG 0.645975 1_3:+51229573 Msa0123890:CDS
TTTGCAGGCAATGAGACACA+TGG 0.649862 1_3:+51227640 Msa0123890:CDS
GGAAGATTTAGATCCCAAAG+TGG 0.666978 1_3:-51224921 None:intergenic
GATCTTTGATCATGATGTGG+TGG 0.669405 1_3:+51229775 Msa0123890:CDS
TGCACTGTTGTAGAAAAGGG+TGG 0.669575 1_3:-51230761 None:intergenic
CGGAACAGTCTGAGACAGAA+CGG 0.670992 1_3:-51227685 None:intergenic
GCTGCCGTTATACACTATGA+CGG 0.671390 1_3:+51230666 Msa0123890:CDS
AACAAAATAACAAAGAACGT+TGG 0.675351 1_3:-51231037 None:intergenic
GCAACGTTCCAATTCCACAA+TGG 0.679589 1_3:-51230528 None:intergenic
ATACATTGTTGTTTGTGCTG+CGG 0.681304 1_3:+51224825 Msa0123890:five_prime_UTR
TGTTGCGCATGGAACATCGA+AGG 0.682741 1_3:+51226787 Msa0123890:five_prime_UTR
GCAGGCAATGAGACACATGG+AGG 0.687043 1_3:+51227643 Msa0123890:CDS
CAGAGGTATTGGACAGACGA+TGG 0.687909 1_3:+51230589 Msa0123890:CDS
CAGCTGTTGAAAGAAATGGT+TGG 0.695846 1_3:+51226568 Msa0123890:five_prime_UTR
TGACAAATCTGAATCCCGGG+TGG 0.708710 1_3:-51227029 None:intergenic
CACCTTCTATAACAAGACAG+AGG 0.711932 1_3:+51230572 Msa0123890:CDS
AGGGTTCTGAGAAGCCATTG+TGG 0.716991 1_3:+51230514 Msa0123890:intron
GGAAAATGAGAGGAGCAACG+AGG 0.722457 1_3:-51225029 None:intergenic
GGGATTCAGATTTGTCAAGG+AGG 0.737828 1_3:+51227035 Msa0123890:CDS
CAACTCCTGAGTTATGACCA+AGG 0.748657 1_3:-51230623 None:intergenic
ACGGCTGACAGTAGACAGTG+AGG 0.760788 1_3:-51227666 None:intergenic
CTGTTGGAAAGATTGCACAA+TGG 0.790494 1_3:-51231205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGAAATATTAAACTTT+TGG + chr1_3:51225475-51225494 Msa0123890:intron 10.0%
!!! GATTAAAGATAAAATTTTAA+TGG + chr1_3:51226910-51226929 Msa0123890:exon 10.0%
!! TAAATTCATATGAAATAATA+AGG - chr1_3:51228002-51228021 None:intergenic 10.0%
!!! TCATTTTTATTTTATTTTGA+TGG + chr1_3:51230223-51230242 Msa0123890:intron 10.0%
!!! ATTTTATTGGATTTTAATTG+TGG + chr1_3:51225300-51225319 Msa0123890:intron 15.0%
!! CTATATCAAAAGATAAAATA+TGG - chr1_3:51226163-51226182 None:intergenic 15.0%
!! AAAAGTTCAAAGTAAAATAT+AGG + chr1_3:51227492-51227511 Msa0123890:intron 15.0%
!!! TTTTTTATAACTAAACCTAT+TGG - chr1_3:51228167-51228186 None:intergenic 15.0%
!!! ATTTTGTGATATTTTCTTAT+GGG + chr1_3:51228967-51228986 Msa0123890:intron 15.0%
!!! TTATTAGCTAATTTTACATT+AGG - chr1_3:51229248-51229267 None:intergenic 15.0%
!! ATTTATACTAATACATAATC+AGG - chr1_3:51229302-51229321 None:intergenic 15.0%
!! GATTATGTATTAGTATAAAT+AGG + chr1_3:51229302-51229321 Msa0123890:intron 15.0%
!!! AATATATGTTTAAGATTTGT+GGG + chr1_3:51230370-51230389 Msa0123890:intron 15.0%
!! TTTAATCTTTAATCTTTACA+TGG + chr1_3:51231169-51231188 Msa0123890:three_prime_UTR 15.0%
!! AGAAATTTCACAATAAGTAA+TGG - chr1_3:51225106-51225125 None:intergenic 20.0%
!! AAAACAACTTATAGTTTATG+TGG + chr1_3:51226126-51226145 Msa0123890:intron 20.0%
!! ATTATTTATCTTTCATCACT+AGG - chr1_3:51226391-51226410 None:intergenic 20.0%
!! TTGAATTTATGATTGTGATT+TGG + chr1_3:51226411-51226430 Msa0123890:intron 20.0%
!! TGAATTTATGATTGTGATTT+GGG + chr1_3:51226412-51226431 Msa0123890:intron 20.0%
!! AAATTTCAAGAGAAAACTAA+TGG + chr1_3:51227126-51227145 Msa0123890:intron 20.0%
!! AAATTTCAAGAGAAAACTAA+TGG + chr1_3:51227126-51227145 Msa0123890:intron 20.0%
!! AAGCAAAATAAAGAAATACT+AGG - chr1_3:51227302-51227321 None:intergenic 20.0%
!!! TTCTTTATTTTGCTTCATTT+TGG + chr1_3:51227307-51227326 Msa0123890:intron 20.0%
!! ATTTAATCGAGAGTTATTAA+TGG + chr1_3:51227416-51227435 Msa0123890:intron 20.0%
!!! TTTTGAGAAAAATGATGTTT+TGG - chr1_3:51227476-51227495 None:intergenic 20.0%
!!! TGATGAATCTTATTTTCATT+TGG - chr1_3:51227887-51227906 None:intergenic 20.0%
!!! AAATAATAAGGTATTTACCT+TGG - chr1_3:51227990-51228009 None:intergenic 20.0%
!! TGAAAAGTAAAAGTAAAGAA+TGG - chr1_3:51228082-51228101 None:intergenic 20.0%
!!! GTATTAGATTTGAAGTTAAA+GGG - chr1_3:51228549-51228568 None:intergenic 20.0%
!!! TTGATTTGTAAAACAAACAA+TGG + chr1_3:51228784-51228803 Msa0123890:intron 20.0%
!!! AGTACAGTGATAATTTATTT+TGG + chr1_3:51228827-51228846 Msa0123890:intron 20.0%
!!! GTACAGTGATAATTTATTTT+GGG + chr1_3:51228828-51228847 Msa0123890:intron 20.0%
!!! GATTTTGTGATATTTTCTTA+TGG + chr1_3:51228966-51228985 Msa0123890:intron 20.0%
!!! TTGATGGTTATATTTAAACA+TGG - chr1_3:51229207-51229226 None:intergenic 20.0%
!! ATGTTTAAATATAACCATCA+AGG + chr1_3:51229206-51229225 Msa0123890:intron 20.0%
!! TAAATAGTAACAACTGATAT+AGG - chr1_3:51229435-51229454 None:intergenic 20.0%
!! ATTATTCAGCTTGAATATAA+TGG + chr1_3:51229474-51229493 Msa0123890:intron 20.0%
!! AATATGAATGGAAATGTTAA+TGG + chr1_3:51229830-51229849 Msa0123890:CDS 20.0%
!!! CTGTTTTAATCAGATTATTA+AGG + chr1_3:51230329-51230348 Msa0123890:intron 20.0%
!! CACAAATCTTAAACATATAT+TGG - chr1_3:51230371-51230390 None:intergenic 20.0%
!!! CAATATATGTTTAAGATTTG+TGG + chr1_3:51230369-51230388 Msa0123890:intron 20.0%
!! TTCCAAAAAATGATAAAAAC+AGG - chr1_3:51230396-51230415 None:intergenic 20.0%
!! TATATGAAAGAAAATATTGC+AGG - chr1_3:51230443-51230462 None:intergenic 20.0%
!! TATAATGCATTGAAAATCTA+AGG + chr1_3:51230468-51230487 Msa0123890:intron 20.0%
! CAAACAACAATGTATAGATT+TGG - chr1_3:51224820-51224839 None:intergenic 25.0%
!! AGTAATGGAAAAGAAGTAAT+GGG - chr1_3:51225091-51225110 None:intergenic 25.0%
!! AAGTAATGGAAAAGAAGTAA+TGG - chr1_3:51225092-51225111 None:intergenic 25.0%
! GAAAAAAAAAGCTTCTATCA+AGG - chr1_3:51225190-51225209 None:intergenic 25.0%
! TGAATAAGTGATTATAAGTG+GGG - chr1_3:51225550-51225569 None:intergenic 25.0%
! CTGAATAAGTGATTATAAGT+GGG - chr1_3:51225551-51225570 None:intergenic 25.0%
! AAAGCTTCATATTGAAGATA+TGG - chr1_3:51225721-51225740 None:intergenic 25.0%
! ACAATGATATTTCACATTGT+TGG + chr1_3:51225749-51225768 Msa0123890:intron 25.0%
!!! CTTTTTAACTAACATGTGTT+GGG - chr1_3:51225954-51225973 None:intergenic 25.0%
! CAACTTATGAAAACAACTTA+TGG + chr1_3:51226051-51226070 Msa0123890:intron 25.0%
! TAAAGTTAATCCAGATACAT+AGG + chr1_3:51226210-51226229 Msa0123890:intron 25.0%
! ACAATAATAACCTATGTATC+TGG - chr1_3:51226223-51226242 None:intergenic 25.0%
! TGCTGAATCTAAAAAGAAAA+AGG - chr1_3:51226438-51226457 None:intergenic 25.0%
! TCTTTATAAACAACTCGATT+AGG - chr1_3:51226483-51226502 None:intergenic 25.0%
! CAATTCAAAATAAACCTACA+TGG - chr1_3:51226603-51226622 None:intergenic 25.0%
!!! ACTTGAGTGTAATTTTGAAA+AGG - chr1_3:51226638-51226657 None:intergenic 25.0%
! ACTCAAGTAATTAACTGAAA+GGG + chr1_3:51226650-51226669 Msa0123890:intron 25.0%
!! TTGCATCTTTATCAATTTTC+AGG + chr1_3:51226683-51226702 Msa0123890:intron 25.0%
! TACATTTATATCTTTGTCTG+TGG - chr1_3:51226762-51226781 None:intergenic 25.0%
! AGAATATTAAAGTGACCAAT+AGG + chr1_3:51226810-51226829 Msa0123890:five_prime_UTR 25.0%
!! TAGGGTTTAAAATATGATGA+TGG - chr1_3:51226856-51226875 None:intergenic 25.0%
!! TGTCACATATACATCTTTTA+AGG - chr1_3:51227228-51227247 None:intergenic 25.0%
!!! CACCTTTTTCATTTTTCATT+TGG + chr1_3:51227246-51227265 Msa0123890:intron 25.0%
! GACCAAATGAAAAATGAAAA+AGG - chr1_3:51227251-51227270 None:intergenic 25.0%
! AGCAAATTAAACATAAAAGC+AGG + chr1_3:51227387-51227406 Msa0123890:intron 25.0%
!!! AAGACAGTGAAAGTTTTTTT+GGG - chr1_3:51227810-51227829 None:intergenic 25.0%
!!! AAAGACAGTGAAAGTTTTTT+TGG - chr1_3:51227811-51227830 None:intergenic 25.0%
! ACAACATAATGATAAAGTTC+TGG - chr1_3:51227911-51227930 None:intergenic 25.0%
! TAAAAGTAAAGAATGGCAAT+GGG - chr1_3:51228075-51228094 None:intergenic 25.0%
!! AGTACATAGCATTTCATTTT+TGG + chr1_3:51228377-51228396 Msa0123890:intron 25.0%
!! GGTATTAGATTTGAAGTTAA+AGG - chr1_3:51228550-51228569 None:intergenic 25.0%
! ACAAATCAAGATTAAGAAAC+AGG - chr1_3:51228773-51228792 None:intergenic 25.0%
! GTCAGTTAATCATCTAATTA+TGG + chr1_3:51228931-51228950 Msa0123890:intron 25.0%
! GTTAATCATCTAATTATGGA+CGG + chr1_3:51228935-51228954 Msa0123890:intron 25.0%
! TTAATCATCTAATTATGGAC+GGG + chr1_3:51228936-51228955 Msa0123890:intron 25.0%
! TAATTGTATTACTAGTACCT+CGG - chr1_3:51228993-51229012 None:intergenic 25.0%
! GTACTAGTAATACAATTAGA+CGG + chr1_3:51228995-51229014 Msa0123890:intron 25.0%
! ATACAATTAGACGGTAAAAA+TGG + chr1_3:51229004-51229023 Msa0123890:intron 25.0%
!! ACTTGAGACTTGAATTTTAT+CGG - chr1_3:51229044-51229063 None:intergenic 25.0%
!! TATTTGAGAGTAAGAGTTTT+AGG + chr1_3:51229120-51229139 Msa0123890:intron 25.0%
! AATATAACCATCAAGGATAA+AGG + chr1_3:51229213-51229232 Msa0123890:intron 25.0%
! ATATAACCATCAAGGATAAA+GGG + chr1_3:51229214-51229233 Msa0123890:intron 25.0%
!!! TAAATAGGAGTATTAGACTA+AGG + chr1_3:51229317-51229336 Msa0123890:intron 25.0%
!!! ATTTGTTTGATTTGCAAGAA+TGG + chr1_3:51229978-51229997 Msa0123890:CDS 25.0%
! CTATCACAAATATTCACAAA+TGG + chr1_3:51230024-51230043 Msa0123890:CDS 25.0%
! TAAATAGCAGAATCATACTA+AGG - chr1_3:51230087-51230106 None:intergenic 25.0%
! TAGATGTGAGAAATTTGATT+GGG - chr1_3:51230113-51230132 None:intergenic 25.0%
! TTAGATGTGAGAAATTTGAT+TGG - chr1_3:51230114-51230133 None:intergenic 25.0%
!!! TTTATTTTGATGGTTTGATC+AGG + chr1_3:51230233-51230252 Msa0123890:intron 25.0%
!! CTCAATTTTCAAACAGTAAT+TGG - chr1_3:51230299-51230318 None:intergenic 25.0%
!! TGAAAATCTAAGGTATTTGT+TGG + chr1_3:51230478-51230497 Msa0123890:intron 25.0%
!! GAAAATCTAAGGTATTTGTT+GGG + chr1_3:51230479-51230498 Msa0123890:intron 25.0%
!! AAAATCTAAGGTATTTGTTG+GGG + chr1_3:51230480-51230499 Msa0123890:intron 25.0%
! GTGGTCAAAATTCAAAAATT+TGG - chr1_3:51230745-51230764 None:intergenic 25.0%
! TCTTGATTGTAACTGTAAAT+TGG - chr1_3:51230929-51230948 None:intergenic 25.0%
! AACAAAATAACAAAGAACGT+TGG - chr1_3:51231040-51231059 None:intergenic 25.0%
!!! ACGTTCTTTGTTATTTTGTT+CGG + chr1_3:51231040-51231059 Msa0123890:three_prime_UTR 25.0%
! AATCTTTAATCTTTACATGG+TGG + chr1_3:51231172-51231191 Msa0123890:three_prime_UTR 25.0%
! TTCTGATAAAAAATTTCACG+TGG + chr1_3:51231391-51231410 Msa0123890:three_prime_UTR 25.0%
!! AATTGCTATTGGAAAATAGT+TGG + chr1_3:51231514-51231533 Msa0123890:three_prime_UTR 25.0%
!! TTATTCAAGAGTTTTTACCA+TGG - chr1_3:51231618-51231637 None:intergenic 25.0%
ACAACAATGTATAGATTTGG+AGG - chr1_3:51224817-51224836 None:intergenic 30.0%
AGATACACACATAGCAAAAA+TGG + chr1_3:51224849-51224868 Msa0123890:five_prime_UTR 30.0%
! AAGCTTCATAATGAAAGTGT+GGG - chr1_3:51224962-51224981 None:intergenic 30.0%
AAAGCTTCATAATGAAAGTG+TGG - chr1_3:51224963-51224982 None:intergenic 30.0%
TGTGAAATTTCTTGTGTTTC+AGG + chr1_3:51225114-51225133 Msa0123890:intron 30.0%
GTGAAATTTCTTGTGTTTCA+GGG + chr1_3:51225115-51225134 Msa0123890:intron 30.0%
TAGTGTGTTATCGAGTTTAT+AGG + chr1_3:51225232-51225251 Msa0123890:intron 30.0%
TGAAATTTCTTGTGCTTTCT+TGG + chr1_3:51225259-51225278 Msa0123890:intron 30.0%
! TGTGCTTTCTTGGATTTTAT+TGG + chr1_3:51225287-51225306 Msa0123890:intron 30.0%
AGGTTATGTAAAGTTGAGTT+AGG - chr1_3:51225506-51225525 None:intergenic 30.0%
AATAAGTGATTATAAGTGGG+GGG - chr1_3:51225548-51225567 None:intergenic 30.0%
GAATAAGTGATTATAAGTGG+GGG - chr1_3:51225549-51225568 None:intergenic 30.0%
CCTGAATAAGTGATTATAAG+TGG - chr1_3:51225552-51225571 None:intergenic 30.0%
CCACTTATAATCACTTATTC+AGG + chr1_3:51225549-51225568 Msa0123890:intron 30.0%
TTGGATAAAAATAGTTGACG+TGG + chr1_3:51225801-51225820 Msa0123890:intron 30.0%
!! GCTTTTTAACTAACATGTGT+TGG - chr1_3:51225955-51225974 None:intergenic 30.0%
!! GATAAGTTGAAAAGTGCTTA+TGG - chr1_3:51226082-51226101 None:intergenic 30.0%
! TAGGTTATTATTGTCGACTA+TGG + chr1_3:51226229-51226248 Msa0123890:intron 30.0%
GAAGTTAAATGCTATACAAC+AGG + chr1_3:51226306-51226325 Msa0123890:five_prime_UTR 30.0%
AAGAGAAAACAAACAACTCA+AGG - chr1_3:51226368-51226387 None:intergenic 30.0%
! AGAAAAGAATAGTGATGATG+AGG + chr1_3:51226533-51226552 Msa0123890:five_prime_UTR 30.0%
CACTCAAGTAATTAACTGAA+AGG + chr1_3:51226649-51226668 Msa0123890:intron 30.0%
ATTTATATCTTTGTCTGTGG+AGG - chr1_3:51226759-51226778 None:intergenic 30.0%
! TTTTCACTTCACGAGAATTA+GGG - chr1_3:51226874-51226893 None:intergenic 30.0%
! TTTTTCACTTCACGAGAATT+AGG - chr1_3:51226875-51226894 None:intergenic 30.0%
ACTAATGGTTTAGTCCTTAA+AGG + chr1_3:51227141-51227160 Msa0123890:intron 30.0%
TTACACTATTCAGACCTTTA+AGG - chr1_3:51227158-51227177 None:intergenic 30.0%
TTCAGAAAACTAGAAGCTAT+GGG - chr1_3:51227273-51227292 None:intergenic 30.0%
ATTCAGAAAACTAGAAGCTA+TGG - chr1_3:51227274-51227293 None:intergenic 30.0%
TACTACTTATTGAAGCATGT+AGG + chr1_3:51227343-51227362 Msa0123890:intron 30.0%
AAACTAATGAGTAACATCGT+TGG + chr1_3:51227519-51227538 Msa0123890:intron 30.0%
AATCACATCAACTTTCTAGA+TGG - chr1_3:51227564-51227583 None:intergenic 30.0%
! GAACTTCGATTGTTTTCATA+TGG - chr1_3:51227613-51227632 None:intergenic 30.0%
! ATCTTGTTAATCTTGCTGTA+CGG + chr1_3:51227780-51227799 Msa0123890:CDS 30.0%
! CATATGAATTTAACTTCCAC+TGG + chr1_3:51228010-51228029 Msa0123890:intron 30.0%
GTAAAAGTAAAGAATGGCAA+TGG - chr1_3:51228076-51228095 None:intergenic 30.0%
!!! TCTTTTTCAGCAGTTGAATT+AGG - chr1_3:51228126-51228145 None:intergenic 30.0%
AAATACCAGCAAATACCAAT+AGG + chr1_3:51228149-51228168 Msa0123890:intron 30.0%
TTGTCAAATCTCTTCCATAT+TGG + chr1_3:51228246-51228265 Msa0123890:intron 30.0%
TCAAGGAAGGATTATAATGA+CGG - chr1_3:51228349-51228368 None:intergenic 30.0%
! TGAAATGCTATGTACTGATA+AGG - chr1_3:51228373-51228392 None:intergenic 30.0%
! TTAGATTTGAAGTTAAAGGG+AGG - chr1_3:51228546-51228565 None:intergenic 30.0%
! TGGATTCTCTTTTTCTCAAA+AGG + chr1_3:51228589-51228608 Msa0123890:intron 30.0%
! TCTCTTTTTCTCAAAAGGAA+AGG + chr1_3:51228594-51228613 Msa0123890:intron 30.0%
ACTGCTTATGCATTAGTTAA+TGG - chr1_3:51228643-51228662 None:intergenic 30.0%
AGATGAGAGAGAGATAAAAA+CGG + chr1_3:51228718-51228737 Msa0123890:intron 30.0%
AAAATTCAAGTCTCAAGTGT+AGG + chr1_3:51229046-51229065 Msa0123890:intron 30.0%
AAATTCAAGTCTCAAGTGTA+GGG + chr1_3:51229047-51229066 Msa0123890:intron 30.0%
TAGAATAGAATCCGATACAA+AGG + chr1_3:51229082-51229101 Msa0123890:intron 30.0%
TGACAATTTCTCCTTTGTAT+CGG - chr1_3:51229096-51229115 None:intergenic 30.0%
!! TTAGGATTTTAGAGAGAAGA+AGG + chr1_3:51229138-51229157 Msa0123890:intron 30.0%
! GTTTGATTGATTCTCAAATG+AGG + chr1_3:51229174-51229193 Msa0123890:intron 30.0%
TTGTCGAAATACAATACCTT+CGG + chr1_3:51229659-51229678 Msa0123890:CDS 30.0%
TACAATACCTTCGGTAAAAA+TGG + chr1_3:51229668-51229687 Msa0123890:CDS 30.0%
! ATCAATTCAGAAGTGTATCT+TGG - chr1_3:51229704-51229723 None:intergenic 30.0%
! AAAGATCGCGATCTTATTTA+GGG - chr1_3:51229762-51229781 None:intergenic 30.0%
CTATGGAATGTCAATATGAA+TGG + chr1_3:51229818-51229837 Msa0123890:CDS 30.0%
ATGGAGGAGACATAATTTAA+CGG + chr1_3:51229997-51230016 Msa0123890:CDS 30.0%
AATAACAATGTCAAATGCCA+TGG - chr1_3:51230202-51230221 None:intergenic 30.0%
ATGGTTTGATCAGGTTATTA+GGG + chr1_3:51230242-51230261 Msa0123890:intron 30.0%
GTAATTGGAATGACAGTAAT+TGG - chr1_3:51230284-51230303 None:intergenic 30.0%
!!! GGCCTGTTTTTATCATTTTT+TGG + chr1_3:51230391-51230410 Msa0123890:intron 30.0%
!!! CAGTTTTAGATTTTGAGCTA+TGG - chr1_3:51230795-51230814 None:intergenic 30.0%
! TAAATTGGAGAGAACGTTTT+CGG - chr1_3:51230914-51230933 None:intergenic 30.0%
ACAAATCAGAATAGAGATGA+TGG + chr1_3:51231110-51231129 Msa0123890:three_prime_UTR 30.0%
! TTAATCTTTACATGGTGGAA+AGG + chr1_3:51231177-51231196 Msa0123890:three_prime_UTR 30.0%
!! AAATATTTTGAAGGGGCTAT+TGG + chr1_3:51231431-51231450 Msa0123890:three_prime_UTR 30.0%
!! TTATTGCCCTGTATTTTGAA+TGG + chr1_3:51231467-51231486 Msa0123890:three_prime_UTR 30.0%
CTGATTCCATTCAAAATACA+GGG - chr1_3:51231476-51231495 None:intergenic 30.0%
! TGTGTTTTGCTAATTGCTAT+TGG + chr1_3:51231503-51231522 Msa0123890:three_prime_UTR 30.0%
GATTATTACCAATGATACCA+TGG + chr1_3:51231598-51231617 Msa0123890:three_prime_UTR 30.0%
! AGTTTTTACCATGGTATCAT+TGG - chr1_3:51231609-51231628 None:intergenic 30.0%
!! ATACATTGTTGTTTGTGCTG+CGG + chr1_3:51224825-51224844 Msa0123890:five_prime_UTR 35.0%
TCCAAGTGTTTAATCCACTT+TGG + chr1_3:51224907-51224926 Msa0123890:five_prime_UTR 35.0%
CCAAGTGTTTAATCCACTTT+GGG + chr1_3:51224908-51224927 Msa0123890:five_prime_UTR 35.0%
AGAATACCTAGGAAAATGAG+AGG - chr1_3:51225042-51225061 None:intergenic 35.0%
GTATTCTTCTTCTTCTCCTA+AGG + chr1_3:51225055-51225074 Msa0123890:intron 35.0%
CAACACGATACAAATCTTCA+AGG - chr1_3:51225152-51225171 None:intergenic 35.0%
AAAAGCTTCTATCAAGGTGA+AGG - chr1_3:51225184-51225203 None:intergenic 35.0%
CTAGAAAATGTACTCTGAGT+AGG + chr1_3:51225365-51225384 Msa0123890:intron 35.0%
CATAACCTACTTGTAAAACG+AGG + chr1_3:51225518-51225537 Msa0123890:intron 35.0%
! GAAATCCTCGTTTTACAAGT+AGG - chr1_3:51225526-51225545 None:intergenic 35.0%
TTTCAACTATCAGGCTATTC+GGG - chr1_3:51225645-51225664 None:intergenic 35.0%
GTTTCAACTATCAGGCTATT+CGG - chr1_3:51225646-51225665 None:intergenic 35.0%
ACTATCAGGTTTCAACTATC+AGG - chr1_3:51225654-51225673 None:intergenic 35.0%
GATAGTTGAAACCTGATAGT+AGG + chr1_3:51225654-51225673 Msa0123890:intron 35.0%
GTGAGTTAAAAGTCTCACAT+TGG + chr1_3:51225782-51225801 Msa0123890:intron 35.0%
TGAACACTTGTCAGATTGTT+AGG + chr1_3:51226026-51226045 Msa0123890:intron 35.0%
GAACACTTGTCAGATTGTTA+GGG + chr1_3:51226027-51226046 Msa0123890:intron 35.0%
!!! TGTTTTGATTGCAGACATAC+AGG + chr1_3:51226272-51226291 Msa0123890:intron 35.0%
AAATGCTATACAACAGGTAG+TGG + chr1_3:51226312-51226331 Msa0123890:intron 35.0%
AATGCTATACAACAGGTAGT+GGG + chr1_3:51226313-51226332 Msa0123890:intron 35.0%
ATTGCAGCTGTTGAAAGAAA+TGG + chr1_3:51226564-51226583 Msa0123890:five_prime_UTR 35.0%
AATGTAAATGATGTTGCGCA+TGG + chr1_3:51226776-51226795 Msa0123890:five_prime_UTR 35.0%
TCGTGAAGTGAAAAATCAGA+AGG + chr1_3:51226880-51226899 Msa0123890:five_prime_UTR 35.0%
AAGCATGTAGGTTGTAGAAA+GGG + chr1_3:51227355-51227374 Msa0123890:intron 35.0%
!!! ATGGATACTTTTTCACTGGA+AGG - chr1_3:51227545-51227564 None:intergenic 35.0%
!!! CTAGATGGATACTTTTTCAC+TGG - chr1_3:51227549-51227568 None:intergenic 35.0%
ACTTTCACTGTCTTTCTATG+CGG + chr1_3:51227816-51227835 Msa0123890:CDS 35.0%
! AATTTAACTTCCACTGGCTA+TGG + chr1_3:51228016-51228035 Msa0123890:intron 35.0%
CTAAACCTATTGGTATTTGC+TGG - chr1_3:51228157-51228176 None:intergenic 35.0%
! ACAAGCACTTTTAGCCAATA+TGG - chr1_3:51228263-51228282 None:intergenic 35.0%
! CTATGTACTGATAAGGTTCA+AGG - chr1_3:51228366-51228385 None:intergenic 35.0%
ATTTGAATGACACGCAACAT+TGG + chr1_3:51228413-51228432 Msa0123890:intron 35.0%
TTTGAATGACACGCAACATT+GGG + chr1_3:51228414-51228433 Msa0123890:intron 35.0%
!! TAAGCAGTTGTTTTCCAGTT+AGG + chr1_3:51228655-51228674 Msa0123890:intron 35.0%
TTAAAAGAGTTCCTCCTAAC+TGG - chr1_3:51228672-51228691 None:intergenic 35.0%
TAAAAACGGTATAAGCTTCC+TGG + chr1_3:51228732-51228751 Msa0123890:intron 35.0%
! AGACGGTAAAAATGGATTCT+AGG + chr1_3:51229012-51229031 Msa0123890:intron 35.0%
! GACGGTAAAAATGGATTCTA+GGG + chr1_3:51229013-51229032 Msa0123890:intron 35.0%
! ATTTTGCCCTTTATCCTTGA+TGG - chr1_3:51229223-51229242 None:intergenic 35.0%
!! GATAGTGACTTTTTAACTGC+AGG + chr1_3:51229508-51229527 Msa0123890:intron 35.0%
ATATGGAAAACAAGTTTCCC+TGG - chr1_3:51229536-51229555 None:intergenic 35.0%
TGAGAGAATCAGTCACTATA+TGG - chr1_3:51229553-51229572 None:intergenic 35.0%
! CAAAGATCGCGATCTTATTT+AGG - chr1_3:51229763-51229782 None:intergenic 35.0%
AACAAGATCTCAGTGAACTA+TGG + chr1_3:51229801-51229820 Msa0123890:CDS 35.0%
AACTTCTCAGATCCACTAAT+TGG + chr1_3:51229911-51229930 Msa0123890:CDS 35.0%
TCAAAACTCTCTCCAATTAG+TGG - chr1_3:51229926-51229945 None:intergenic 35.0%
TTGATGTCAATTCTTGCACA+TGG + chr1_3:51229942-51229961 Msa0123890:CDS 35.0%
TGATGTCAATTCTTGCACAT+GGG + chr1_3:51229943-51229962 Msa0123890:CDS 35.0%
!! TGTTTGATTTGCAAGAATGG+AGG + chr1_3:51229981-51230000 Msa0123890:CDS 35.0%
ATCTCATCAACTCTTCAGTT+AGG + chr1_3:51230134-51230153 Msa0123890:intron 35.0%
GATGGTTTGATCAGGTTATT+AGG + chr1_3:51230241-51230260 Msa0123890:intron 35.0%
TGTTTGAAAATTGAGATGCG+TGG + chr1_3:51230304-51230323 Msa0123890:intron 35.0%
GTTTGAAAATTGAGATGCGT+GGG + chr1_3:51230305-51230324 Msa0123890:intron 35.0%
TTTGAAAATTGAGATGCGTG+GGG + chr1_3:51230306-51230325 Msa0123890:intron 35.0%
! TACCTCTGTCTTGTTATAGA+AGG - chr1_3:51230577-51230596 None:intergenic 35.0%
! CTATAACAAGACAGAGGTAT+TGG + chr1_3:51230578-51230597 Msa0123890:CDS 35.0%
AATCCCGTCATAGTGTATAA+CGG - chr1_3:51230673-51230692 None:intergenic 35.0%
! TTATACACTATGACGGGATT+AGG + chr1_3:51230673-51230692 Msa0123890:CDS 35.0%
CCATGGTTAGATATTGCAAT+GGG + chr1_3:51230699-51230718 Msa0123890:CDS 35.0%
ATTGCAATGGGCAGATATAA+AGG + chr1_3:51230711-51230730 Msa0123890:CDS 35.0%
TGGGCAGATATAAAGGTTAT+TGG + chr1_3:51230718-51230737 Msa0123890:CDS 35.0%
GATTGCACTGTTGTAGAAAA+GGG - chr1_3:51230767-51230786 None:intergenic 35.0%
AGATTGCACTGTTGTAGAAA+AGG - chr1_3:51230768-51230787 None:intergenic 35.0%
! TTTAGATTTTGAGCTATGGC+TGG - chr1_3:51230791-51230810 None:intergenic 35.0%
! AAATTGGAGAGAACGTTTTC+GGG - chr1_3:51230913-51230932 None:intergenic 35.0%
CCAGAAAATGAAACACAACT+AGG - chr1_3:51231246-51231265 None:intergenic 35.0%
! CCTAGTTGTGTTTCATTTTC+TGG + chr1_3:51231243-51231262 Msa0123890:three_prime_UTR 35.0%
! AGTTGTGTTTCATTTTCTGG+CGG + chr1_3:51231246-51231265 Msa0123890:three_prime_UTR 35.0%
TCAGTTTCACTTCTGATCTT+CGG - chr1_3:51231282-51231301 None:intergenic 35.0%
AGCCCCTTCAAAATATTTGA+GGG - chr1_3:51231429-51231448 None:intergenic 35.0%
TAGCCCCTTCAAAATATTTG+AGG - chr1_3:51231430-51231449 None:intergenic 35.0%
! GCTGATTCCATTCAAAATAC+AGG - chr1_3:51231477-51231496 None:intergenic 35.0%
!! CCCAAAGTGGATTAAACACT+TGG - chr1_3:51224911-51224930 None:intergenic 40.0%
GGAAGATTTAGATCCCAAAG+TGG - chr1_3:51224924-51224943 None:intergenic 40.0%
TGTGGGAAACAAAGTGCATT+TGG - chr1_3:51224945-51224964 None:intergenic 40.0%
GAAAGAGAAGAGAGAGAATG+AGG - chr1_3:51225005-51225024 None:intergenic 40.0%
GGAGAAGAAGAAGAATACCT+AGG - chr1_3:51225053-51225072 None:intergenic 40.0%
CTTGGATTCTTGTGCTTTCT+TGG + chr1_3:51225277-51225296 Msa0123890:intron 40.0%
AGGTCATATCACTTCCAATG+TGG + chr1_3:51225569-51225588 Msa0123890:intron 40.0%
GGTCATATCACTTCCAATGT+GGG + chr1_3:51225570-51225589 Msa0123890:intron 40.0%
GTGTATTAAGAGTCCCACAT+TGG - chr1_3:51225586-51225605 None:intergenic 40.0%
CAGTCCAAATGTCCAATCTT+GGG - chr1_3:51225619-51225638 None:intergenic 40.0%
ACAGTCCAAATGTCCAATCT+TGG - chr1_3:51225620-51225639 None:intergenic 40.0%
AGTTGAAACCTGATAGTAGG+TGG + chr1_3:51225657-51225676 Msa0123890:intron 40.0%
CTTGACGCATTAGGTATATG+AGG - chr1_3:51225837-51225856 None:intergenic 40.0%
CTCATATACCTAATGCGTCA+AGG + chr1_3:51225835-51225854 Msa0123890:intron 40.0%
! ACCTAATGCGTCAAGGTTTT+AGG + chr1_3:51225842-51225861 Msa0123890:intron 40.0%
ACCTAAAACCTTGACGCATT+AGG - chr1_3:51225846-51225865 None:intergenic 40.0%
! ATGATCCAACCCAGTGTTTT+AGG + chr1_3:51225916-51225935 Msa0123890:intron 40.0%
TTGATTGCAGACATACAGGA+CGG + chr1_3:51226276-51226295 Msa0123890:intron 40.0%
CAGCTGTTGAAAGAAATGGT+TGG + chr1_3:51226568-51226587 Msa0123890:five_prime_UTR 40.0%
GTTGGTATATGTAGCCATGT+AGG + chr1_3:51226586-51226605 Msa0123890:intron 40.0%
CCTTGTCTTGTCTTTCATCA+TGG - chr1_3:51226715-51226734 None:intergenic 40.0%
CCATGATGAAAGACAAGACA+AGG + chr1_3:51226712-51226731 Msa0123890:five_prime_UTR 40.0%
TCCTTGACAAATCTGAATCC+CGG - chr1_3:51227036-51227055 None:intergenic 40.0%
GTAGTTATGTGCTTGCGTTT+AGG + chr1_3:51227071-51227090 Msa0123890:intron 40.0%
GAAGCATGTAGGTTGTAGAA+AGG + chr1_3:51227354-51227373 Msa0123890:intron 40.0%
AAGAAACCTCGTATTCTTCG+TGG + chr1_3:51227449-51227468 Msa0123890:intron 40.0%
! AGTTCGTTTTCAGAGAAGTC+AGG + chr1_3:51227751-51227770 Msa0123890:CDS 40.0%
! ATATTTTGCCCTAAGACCTG+AGG + chr1_3:51227850-51227869 Msa0123890:CDS 40.0%
TGTCTTCTCTGACAATGTTC+TGG + chr1_3:51227928-51227947 Msa0123890:CDS 40.0%
TCGTAAAGTTAGTCCCTTAG+TGG + chr1_3:51228202-51228221 Msa0123890:intron 40.0%
CGTAAAGTTAGTCCCTTAGT+GGG + chr1_3:51228203-51228222 Msa0123890:intron 40.0%
GTAAAGTTAGTCCCTTAGTG+GGG + chr1_3:51228204-51228223 Msa0123890:intron 40.0%
! GTACTGATAAGGTTCAAGGA+AGG - chr1_3:51228362-51228381 None:intergenic 40.0%
!! GTTAAAGGGAGGCATTATGA+AGG - chr1_3:51228535-51228554 None:intergenic 40.0%
CAGTTATAAGAGCAGTAGAG+AGG - chr1_3:51228571-51228590 None:intergenic 40.0%
CTCTCTACTGCTCTTATAAC+TGG + chr1_3:51228569-51228588 Msa0123890:intron 40.0%
TTACGCTGCAACAGCTATTA+AGG - chr1_3:51228695-51228714 None:intergenic 40.0%
CTAATTATGGACGGGAACTT+AGG + chr1_3:51228944-51228963 Msa0123890:intron 40.0%
! TGATATTTTCTTATGGGCCG+AGG + chr1_3:51228973-51228992 Msa0123890:intron 40.0%
ACACGGAGCATACTATTGAT+GGG - chr1_3:51229373-51229392 None:intergenic 40.0%
AAAGACACCCAACAATGACA+CGG - chr1_3:51229390-51229409 None:intergenic 40.0%
!! ACTTTTTAACTGCAGGAACC+AGG + chr1_3:51229515-51229534 Msa0123890:intron 40.0%
!! CTTTTTAACTGCAGGAACCA+GGG + chr1_3:51229516-51229535 Msa0123890:intron 40.0%
TGGTTCTTGATAAACTCTCC+TGG + chr1_3:51229593-51229612 Msa0123890:CDS 40.0%
TACAGTCCATATACAGAGCA+CGG + chr1_3:51229622-51229641 Msa0123890:CDS 40.0%
!! GCTGTTACCATTTTTACCGA+AGG - chr1_3:51229678-51229697 None:intergenic 40.0%
GATCTTTGATCATGATGTGG+TGG + chr1_3:51229775-51229794 Msa0123890:CDS 40.0%
GGAAATGTTAATGGAGCTGT+TGG + chr1_3:51229839-51229858 Msa0123890:CDS 40.0%
AAGGCAAAACCCCATTTCAT+AGG + chr1_3:51229873-51229892 Msa0123890:CDS 40.0%
CAAAACCCCATTTCATAGGA+TGG + chr1_3:51229877-51229896 Msa0123890:CDS 40.0%
ACCCATCCATCCTATGAAAT+GGG - chr1_3:51229886-51229905 None:intergenic 40.0%
AACCCATCCATCCTATGAAA+TGG - chr1_3:51229887-51229906 None:intergenic 40.0%
AATTCTTGCACATGGGCATT+TGG + chr1_3:51229950-51229969 Msa0123890:CDS 40.0%
!! TCTTGGCATCGATTAGGTTA+TGG + chr1_3:51230158-51230177 Msa0123890:intron 40.0%
GATTTAAAGAATTGCCGCCA+TGG + chr1_3:51230182-51230201 Msa0123890:intron 40.0%
AACAATGTCAAATGCCATGG+CGG - chr1_3:51230199-51230218 None:intergenic 40.0%
CACCTTCTATAACAAGACAG+AGG + chr1_3:51230572-51230591 Msa0123890:CDS 40.0%
TGATCGAAATGAGATTGAGC+AGG + chr1_3:51230644-51230663 Msa0123890:CDS 40.0%
GCCATGGTTAGATATTGCAA+TGG + chr1_3:51230698-51230717 Msa0123890:CDS 40.0%
CCCATTGCAATATCTAACCA+TGG - chr1_3:51230702-51230721 None:intergenic 40.0%
AGACTTGTCAACAAGAGAAG+TGG - chr1_3:51230819-51230838 None:intergenic 40.0%
ACTTCTCTTGTTGACAAGTC+TGG + chr1_3:51230818-51230837 Msa0123890:three_prime_UTR 40.0%
!! GTCAGTGATGAGTGTTTTAG+TGG + chr1_3:51230954-51230973 Msa0123890:three_prime_UTR 40.0%
! GAGCTGCACTATGTTTTACA+TGG + chr1_3:51231075-51231094 Msa0123890:three_prime_UTR 40.0%
CTGTTGGAAAGATTGCACAA+TGG - chr1_3:51231208-51231227 None:intergenic 40.0%
GAAACACAACTAGGTCATAC+TGG - chr1_3:51231237-51231256 None:intergenic 40.0%
!! GTTTCATTTTCTGGCGGTTA+TGG + chr1_3:51231252-51231271 Msa0123890:three_prime_UTR 40.0%
TGAAACTGAACAGCAACCAA+AGG + chr1_3:51231293-51231312 Msa0123890:three_prime_UTR 40.0%
ACAGCAACCAAAGGTTAGAA+AGG + chr1_3:51231302-51231321 Msa0123890:three_prime_UTR 40.0%
AACCAAAGGTTAGAAAGGTC+TGG + chr1_3:51231307-51231326 Msa0123890:three_prime_UTR 40.0%
TTCCAGACCTTTCTAACCTT+TGG - chr1_3:51231312-51231331 None:intergenic 40.0%
AAGGTTAGAAAGGTCTGGAA+TGG + chr1_3:51231312-51231331 Msa0123890:three_prime_UTR 40.0%
AATTTCACGTGGTTGTGCTA+TGG + chr1_3:51231402-51231421 Msa0123890:three_prime_UTR 40.0%
!! TGGCCCCTCAAATATTTTGA+AGG + chr1_3:51231422-51231441 Msa0123890:three_prime_UTR 40.0%
!! GGCCCCTCAAATATTTTGAA+GGG + chr1_3:51231423-51231442 Msa0123890:three_prime_UTR 40.0%
!! GCCCCTCAAATATTTTGAAG+GGG + chr1_3:51231424-51231443 Msa0123890:three_prime_UTR 40.0%
GCCCCTTCAAAATATTTGAG+GGG - chr1_3:51231428-51231447 None:intergenic 40.0%
!!! AGCTTTTTCGTCAACGCCAA+AGG + chr1_3:51224977-51224996 Msa0123890:five_prime_UTR 45.0%
GAGAGAGAATGAGGATCCTT+TGG - chr1_3:51224996-51225015 None:intergenic 45.0%
GAAAATGAGAGGAGCAACGA+GGG - chr1_3:51225031-51225050 None:intergenic 45.0%
! GTTGCTCCTCTCATTTTCCT+AGG + chr1_3:51225033-51225052 Msa0123890:five_prime_UTR 45.0%
TTCTTCTCCTAAGGACGTGT+GGG + chr1_3:51225064-51225083 Msa0123890:intron 45.0%
!! TGGTCCAACGGATTTTGGAT+AGG + chr1_3:51225677-51225696 Msa0123890:intron 45.0%
AGAGCCTATCCAAAATCCGT+TGG - chr1_3:51225684-51225703 None:intergenic 45.0%
! AATAGTTGACGTGGAGCACT+AGG + chr1_3:51225810-51225829 Msa0123890:intron 45.0%
AGTGTGCAAACTCACTTGTG+TGG + chr1_3:51225874-51225893 Msa0123890:intron 45.0%
! ACTGGGTTGGATCATCACAT+TGG - chr1_3:51225911-51225930 None:intergenic 45.0%
TAACATGTGTTGGGACTTCC+GGG - chr1_3:51225945-51225964 None:intergenic 45.0%
CTAACATGTGTTGGGACTTC+CGG - chr1_3:51225946-51225965 None:intergenic 45.0%
GACAAGGATGCTCAGAGAAA+AGG + chr1_3:51226728-51226747 Msa0123890:five_prime_UTR 45.0%
AAAGTGACCAATAGGCCATC+AGG + chr1_3:51226818-51226837 Msa0123890:five_prime_UTR 45.0%
TATTCGACCTGATGGCCTAT+TGG - chr1_3:51226828-51226847 None:intergenic 45.0%
TTCAAGTGTGAGTTGCTGCT+TGG - chr1_3:51226962-51226981 None:intergenic 45.0%
AAGCAGCAACTCACACTTGA+AGG + chr1_3:51226961-51226980 Msa0123890:CDS 45.0%
GGAGCTGCAAATGAAAGAGA+TGG + chr1_3:51226988-51227007 Msa0123890:CDS 45.0%
CCTTGACAAATCTGAATCCC+GGG - chr1_3:51227035-51227054 None:intergenic 45.0%
GGGATTCAGATTTGTCAAGG+AGG + chr1_3:51227035-51227054 Msa0123890:CDS 45.0%
TTTGGTCCACGAAGAATACG+AGG - chr1_3:51227458-51227477 None:intergenic 45.0%
! CGAAGTTCACAGTGTTTTGC+AGG + chr1_3:51227625-51227644 Msa0123890:intron 45.0%
TTTGCAGGCAATGAGACACA+TGG + chr1_3:51227640-51227659 Msa0123890:CDS 45.0%
TGCTTGAAGCTTAGAAGCCA+CGG - chr1_3:51227708-51227727 None:intergenic 45.0%
CTTTCTCTCCTCAGGTCTTA+GGG - chr1_3:51227861-51227880 None:intergenic 45.0%
TTTGGAAGCTTTCTCTCCTC+AGG - chr1_3:51227869-51227888 None:intergenic 45.0%
! TTAACTTCCACTGGCTATGG+TGG + chr1_3:51228019-51228038 Msa0123890:intron 45.0%
! TAACTTCCACTGGCTATGGT+GGG + chr1_3:51228020-51228039 Msa0123890:intron 45.0%
AGTCCAACTAACCCCACTAA+GGG - chr1_3:51228218-51228237 None:intergenic 45.0%
ATCGTGAACGAAAGAGCAAG+TGG + chr1_3:51228311-51228330 Msa0123890:intron 45.0%
GCTGCACTTACTGCAAAACT+AGG + chr1_3:51228443-51228462 Msa0123890:intron 45.0%
!! GCAGTTGTTTTCCAGTTAGG+AGG + chr1_3:51228658-51228677 Msa0123890:intron 45.0%
GGAGCATACTATTGATGGGA+AGG - chr1_3:51229369-51229388 None:intergenic 45.0%
GACACGGAGCATACTATTGA+TGG - chr1_3:51229374-51229393 None:intergenic 45.0%
! AGTATGCTCCGTGTCATTGT+TGG + chr1_3:51229379-51229398 Msa0123890:intron 45.0%
! GTATGCTCCGTGTCATTGTT+GGG + chr1_3:51229380-51229399 Msa0123890:intron 45.0%
! ATATGGACTGTAGCATTGCC+AGG - chr1_3:51229614-51229633 None:intergenic 45.0%
TGTTGTCCGTGCTCTGTATA+TGG - chr1_3:51229631-51229650 None:intergenic 45.0%
AGAGCACGGACAACATTGAA+TGG + chr1_3:51229636-51229655 Msa0123890:CDS 45.0%
! TTTAGGGCAGGGAAAATGTC+TGG - chr1_3:51229746-51229765 None:intergenic 45.0%
! TCGCGATCTTATTTAGGGCA+GGG - chr1_3:51229757-51229776 None:intergenic 45.0%
! ATCGCGATCTTATTTAGGGC+AGG - chr1_3:51229758-51229777 None:intergenic 45.0%
CGCGATCTTTGATCATGATG+TGG + chr1_3:51229772-51229791 Msa0123890:CDS 45.0%
ACCCCATTTCATAGGATGGA+TGG + chr1_3:51229881-51229900 Msa0123890:CDS 45.0%
CCCATCCATCCTATGAAATG+GGG - chr1_3:51229885-51229904 None:intergenic 45.0%
CCCCATTTCATAGGATGGAT+GGG + chr1_3:51229882-51229901 Msa0123890:CDS 45.0%
CAACTCTTCAGTTAGGCTCT+TGG + chr1_3:51230141-51230160 Msa0123890:intron 45.0%
!! TTAGGCTCTTGGCATCGATT+AGG + chr1_3:51230152-51230171 Msa0123890:intron 45.0%
! AAGGTATTTGTTGGGGCGAA+TGG + chr1_3:51230487-51230506 Msa0123890:intron 45.0%
CTGAGAAGCCATTGTGGAAT+TGG + chr1_3:51230520-51230539 Msa0123890:CDS 45.0%
GCAACGTTCCAATTCCACAA+TGG - chr1_3:51230531-51230550 None:intergenic 45.0%
AACGTTGCACGTATGCCTTT+AGG + chr1_3:51230543-51230562 Msa0123890:CDS 45.0%
TTGCACGTATGCCTTTAGGT+TGG + chr1_3:51230547-51230566 Msa0123890:CDS 45.0%
TAGAAGGTGAGCCAACCTAA+AGG - chr1_3:51230561-51230580 None:intergenic 45.0%
CAACTCCTGAGTTATGACCA+AGG - chr1_3:51230626-51230645 None:intergenic 45.0%
GCTGCCGTTATACACTATGA+CGG + chr1_3:51230666-51230685 Msa0123890:CDS 45.0%
CTGCCGTTATACACTATGAC+GGG + chr1_3:51230667-51230686 Msa0123890:CDS 45.0%
TGCACTGTTGTAGAAAAGGG+TGG - chr1_3:51230764-51230783 None:intergenic 45.0%
GTAAAACATAGTGCAGCTCC+TGG - chr1_3:51231074-51231093 None:intergenic 45.0%
! CAACTAGGTCATACTGGTCT+TGG - chr1_3:51231231-51231250 None:intergenic 45.0%
!!! TTTTTAAATAAAATACAAAT+AGG - chr1_3:51231559-51231578 None:intergenic 5.0%
GGAAAATGAGAGGAGCAACG+AGG - chr1_3:51225032-51225051 None:intergenic 50.0%
CTTCTTCTCCTAAGGACGTG+TGG + chr1_3:51225063-51225082 Msa0123890:intron 50.0%
TCTTCTCCTAAGGACGTGTG+GGG + chr1_3:51225065-51225084 Msa0123890:intron 50.0%
AATGTCCAATCTTGGGCGTG+CGG - chr1_3:51225612-51225631 None:intergenic 50.0%
CACGCCCAAGATTGGACATT+TGG + chr1_3:51225612-51225631 Msa0123890:intron 50.0%
CCTGATAGTAGGTGGTCCAA+CGG + chr1_3:51225665-51225684 Msa0123890:intron 50.0%
!! GTAGGTGGTCCAACGGATTT+TGG + chr1_3:51225672-51225691 Msa0123890:intron 50.0%
CTCACTTGTGTGGTTGCTCT+TGG + chr1_3:51225884-51225903 Msa0123890:intron 50.0%
GGGAACCTAAAACACTGGGT+TGG - chr1_3:51225924-51225943 None:intergenic 50.0%
!!! ACCCAGTGTTTTAGGTTCCC+CGG + chr1_3:51225924-51225943 Msa0123890:intron 50.0%
TCCGGGGAACCTAAAACACT+GGG - chr1_3:51225928-51225947 None:intergenic 50.0%
TTCCGGGGAACCTAAAACAC+TGG - chr1_3:51225929-51225948 None:intergenic 50.0%
AACATGTGTTGGGACTTCCG+GGG - chr1_3:51225944-51225963 None:intergenic 50.0%
TGTTGCGCATGGAACATCGA+AGG + chr1_3:51226787-51226806 Msa0123890:five_prime_UTR 50.0%
TGGTCTGCTATTCGACCTGA+TGG - chr1_3:51226836-51226855 None:intergenic 50.0%
! AAGTGTGAGTTGCTGCTTGG+TGG - chr1_3:51226959-51226978 None:intergenic 50.0%
CAACTCACACTTGAAGGAGC+TGG + chr1_3:51226967-51226986 Msa0123890:CDS 50.0%
TGACAAATCTGAATCCCGGG+TGG - chr1_3:51227032-51227051 None:intergenic 50.0%
CCCGGGATTCAGATTTGTCA+AGG + chr1_3:51227032-51227051 Msa0123890:CDS 50.0%
! CGGAACAGTCTGAGACAGAA+CGG - chr1_3:51227688-51227707 None:intergenic 50.0%
TTCTGTCTCAGACTGTTCCG+TGG + chr1_3:51227688-51227707 Msa0123890:CDS 50.0%
GCTTTCTCTCCTCAGGTCTT+AGG - chr1_3:51227862-51227881 None:intergenic 50.0%
CTCTACTGTCTCAACTGCCA+AGG + chr1_3:51227970-51227989 Msa0123890:CDS 50.0%
! AGTCCCTTAGTGGGGTTAGT+TGG + chr1_3:51228212-51228231 Msa0123890:intron 50.0%
CAGTCCAACTAACCCCACTA+AGG - chr1_3:51228219-51228238 None:intergenic 50.0%
AGGATCTGATTCAGAGAGCC+AGG - chr1_3:51228753-51228772 None:intergenic 50.0%
AAGAACCACATCGAGATCGC+TGG - chr1_3:51229581-51229600 None:intergenic 50.0%
TGGAGCTGTTGGAACTTGTC+AGG + chr1_3:51229850-51229869 Msa0123890:CDS 50.0%
GCTGTTGGAACTTGTCAGGA+AGG + chr1_3:51229854-51229873 Msa0123890:CDS 50.0%
!! AGGGTTCTGAGAAGCCATTG+TGG + chr1_3:51230514-51230533 Msa0123890:intron 50.0%
!! CAGAGGTATTGGACAGACGA+TGG + chr1_3:51230589-51230608 Msa0123890:CDS 50.0%
GACAGACGATGGCACATTCT+TGG + chr1_3:51230600-51230619 Msa0123890:CDS 50.0%
!! CTTGGCCTTGGTCATAACTC+AGG + chr1_3:51230618-51230637 Msa0123890:CDS 50.0%
! ATGACGGGATTAGGAAGCCA+TGG + chr1_3:51230682-51230701 Msa0123890:CDS 50.0%
!! GAGAACGTTTTCGGGAAGGA+TGG - chr1_3:51230905-51230924 None:intergenic 50.0%
!! TGGAGAGAACGTTTTCGGGA+AGG - chr1_3:51230909-51230928 None:intergenic 50.0%
AACATAGTGCAGCTCCTGGT+TGG - chr1_3:51231070-51231089 None:intergenic 50.0%
!! GTCATACTGGTCTTGGCTGT+TGG - chr1_3:51231224-51231243 None:intergenic 50.0%
! AAGGTCTGGAATGGCTGAAG+AGG + chr1_3:51231321-51231340 Msa0123890:three_prime_UTR 50.0%
ATGTCCAATCTTGGGCGTGC+GGG - chr1_3:51225611-51225630 None:intergenic 55.0%
CCGTTGGACCACCTACTATC+AGG - chr1_3:51225668-51225687 None:intergenic 55.0%
GAGATGGAGCGAGCAGTAGA+AGG + chr1_3:51227004-51227023 Msa0123890:CDS 55.0%
GCAGGCAATGAGACACATGG+AGG + chr1_3:51227643-51227662 Msa0123890:CDS 55.0%
ACGGCTGACAGTAGACAGTG+AGG - chr1_3:51227669-51227688 None:intergenic 55.0%
AAAGCTCCCACCATAGCCAG+TGG - chr1_3:51228029-51228048 None:intergenic 55.0%
! GGTGGGAGCTTTGTAGCACT+AGG + chr1_3:51228037-51228056 Msa0123890:intron 55.0%
ACTTGCCAGCGATCTCGATG+TGG + chr1_3:51229573-51229592 Msa0123890:CDS 55.0%
TTGTTGGGGCGAATGGTTGC+AGG + chr1_3:51230494-51230513 Msa0123890:intron 55.0%
TGTTGGGGCGAATGGTTGCA+GGG + chr1_3:51230495-51230514 Msa0123890:intron 55.0%
CGATGGCACATTCTTGGCCT+TGG + chr1_3:51230606-51230625 Msa0123890:CDS 55.0%
! TTTTGTTCGGCGTGCCAACC+AGG + chr1_3:51231053-51231072 Msa0123890:three_prime_UTR 55.0%
AATGGGCCCCACACGTCCTT+AGG - chr1_3:51225074-51225093 None:intergenic 60.0%
TGTCCAATCTTGGGCGTGCG+GGG - chr1_3:51225610-51225629 None:intergenic 60.0%
GAGCAGTAGAAGGAGCCACC+CGG + chr1_3:51227014-51227033 Msa0123890:CDS 60.0%
AGCAGTAGAAGGAGCCACCC+GGG + chr1_3:51227015-51227034 Msa0123890:CDS 60.0%
GGGCAGGGAAAATGTCTGGC+AGG - chr1_3:51229742-51229761 None:intergenic 60.0%
ACACCCCGCACGCCCAAGAT+TGG + chr1_3:51225604-51225623 Msa0123890:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51224814 51231644 51224814 ID=Msa0123890;Name=Msa0123890
chr1_3 mRNA 51224814 51231644 51224814 ID=Msa0123890-mRNA-1;Parent=Msa0123890;Name=Msa0123890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=696|1|1|1|0.71|0.62|8|847|426
chr1_3 exon 51224814 51225054 51224814 ID=Msa0123890-mRNA-1:exon:15647;Parent=Msa0123890-mRNA-1
chr1_3 exon 51225136 51225170 51225136 ID=Msa0123890-mRNA-1:exon:15648;Parent=Msa0123890-mRNA-1
chr1_3 exon 51226286 51226327 51226286 ID=Msa0123890-mRNA-1:exon:15649;Parent=Msa0123890-mRNA-1
chr1_3 exon 51226450 51226603 51226450 ID=Msa0123890-mRNA-1:exon:15650;Parent=Msa0123890-mRNA-1
chr1_3 exon 51226705 51227056 51226705 ID=Msa0123890-mRNA-1:exon:15651;Parent=Msa0123890-mRNA-1
chr1_3 exon 51227637 51227991 51227637 ID=Msa0123890-mRNA-1:exon:15652;Parent=Msa0123890-mRNA-1
chr1_3 exon 51229530 51230045 51229530 ID=Msa0123890-mRNA-1:exon:15653;Parent=Msa0123890-mRNA-1
chr1_3 exon 51230516 51231644 51230516 ID=Msa0123890-mRNA-1:exon:15654;Parent=Msa0123890-mRNA-1
chr1_3 five_prime_UTR 51224814 51225054 51224814 ID=Msa0123890-mRNA-1:five_prime_utr;Parent=Msa0123890-mRNA-1
chr1_3 five_prime_UTR 51225136 51225170 51225136 ID=Msa0123890-mRNA-1:five_prime_utr;Parent=Msa0123890-mRNA-1
chr1_3 five_prime_UTR 51226286 51226327 51226286 ID=Msa0123890-mRNA-1:five_prime_utr;Parent=Msa0123890-mRNA-1
chr1_3 five_prime_UTR 51226450 51226603 51226450 ID=Msa0123890-mRNA-1:five_prime_utr;Parent=Msa0123890-mRNA-1
chr1_3 five_prime_UTR 51226705 51226928 51226705 ID=Msa0123890-mRNA-1:five_prime_utr;Parent=Msa0123890-mRNA-1
chr1_3 CDS 51226929 51227056 51226929 ID=Msa0123890-mRNA-1:cds;Parent=Msa0123890-mRNA-1
chr1_3 CDS 51227637 51227991 51227637 ID=Msa0123890-mRNA-1:cds;Parent=Msa0123890-mRNA-1
chr1_3 CDS 51229530 51230045 51229530 ID=Msa0123890-mRNA-1:cds;Parent=Msa0123890-mRNA-1
chr1_3 CDS 51230516 51230797 51230516 ID=Msa0123890-mRNA-1:cds;Parent=Msa0123890-mRNA-1
chr1_3 three_prime_UTR 51230798 51231644 51230798 ID=Msa0123890-mRNA-1:three_prime_utr;Parent=Msa0123890-mRNA-1
Gene Sequence

>Msa0123890

ATGGCTAAAGCATACTTGAAGTTTGCACCACCAAGCAGCAACTCACACTTGAAGGAGCTGGAGCTGCAAATGAAAGAGATGGAGCGAGCAGTAGAAGGAGCCACCCGGGATTCAGATTTGTCAAGGAGTGTTTTGCAGGCAATGAGACACATGGAGGCCTCACTGTCTACTGTCAGCCGTTCTGTCTCAGACTGTTCCGTGGCTTCTAAGCTTCAAGCAATGAAGCGCAAAACTGAAGAGCAAGTTCGTTTTCAGAGAAGTCAGGCAACATATCTTGTTAATCTTGCTGTACGGACTGCCCAAAAAAACTTTCACTGTCTTTCTATGCGGCTGACTGCTGAATATTTTGCCCTAAGACCTGAGGAGAGAAAGCTTCCAAATGAAAATAAGATTCATCATCCAGAACTTTATCATTATGTTGTCTTCTCTGACAATGTTCTGGCATGTGCAGTTGTTGTTAACTCTACTGTCTCAACTGCCAAGGAACCAGGGAAACTTGTTTTCCATATAGTGACTGATTCTCTCAACTTGCCAGCGATCTCGATGTGGTTCTTGATAAACTCTCCTGGCAATGCTACAGTCCATATACAGAGCACGGACAACATTGAATGGTTGTCGAAATACAATACCTTCGGTAAAAATGGTAACAGCGATCCAAGATACACTTCTGAATTGATCTACTTGCTTTTCTACCTGCCAGACATTTTCCCTGCCCTAAATAAGATCGCGATCTTTGATCATGATGTGGTGGTTCAACAAGATCTCAGTGAACTATGGAATGTCAATATGAATGGAAATGTTAATGGAGCTGTTGGAACTTGTCAGGAAGGCAAAACCCCATTTCATAGGATGGATGGGTTCATAAACTTCTCAGATCCACTAATTGGAGAGAGTTTTGATGTCAATTCTTGCACATGGGCATTTGGAATGAATTTGTTTGATTTGCAAGAATGGAGGAGACATAATTTAACGGCTGTCTATCACAAATATTCACAAATGGGTTCTGAGAAGCCATTGTGGAATTGGAACGTTGCACGTATGCCTTTAGGTTGGCTCACCTTCTATAACAAGACAGAGGTATTGGACAGACGATGGCACATTCTTGGCCTTGGTCATAACTCAGGAGTTGATCGAAATGAGATTGAGCAGGCTGCCGTTATACACTATGACGGGATTAGGAAGCCATGGTTAGATATTGCAATGGGCAGATATAAAGGTTATTGGACCAAATTTTTGAATTTTGACCACCCTTTTCTACAACAGTGCAATCTCCAGCCATAG
Protein sequence

>Msa0123890

MAKAYLKFAPPSSNSHLKELELQMKEMERAVEGATRDSDLSRSVLQAMRHMEASLSTVSRSVSDCSVASKLQAMKRKTEEQVRFQRSQATYLVNLAVRTAQKNFHCLSMRLTAEYFALRPEERKLPNENKIHHPELYHYVVFSDNVLACAVVVNSTVSTAKEPGKLVFHIVTDSLNLPAISMWFLINSPGNATVHIQSTDNIEWLSKYNTFGKNGNSDPRYTSELIYLLFYLPDIFPALNKIAIFDHDVVVQQDLSELWNVNMNGNVNGAVGTCQEGKTPFHRMDGFINFSDPLIGESFDVNSCTWAFGMNLFDLQEWRRHNLTAVYHKYSQMGSEKPLWNWNVARMPLGWLTFYNKTEVLDRRWHILGLGHNSGVDRNEIEQAAVIHYDGIRKPWLDIAMGRYKGYWTKFLNFDHPFLQQCNLQP*