Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123930 | sp|Q8W104|FBL17_ARATH | 57.050 | 617 | 193 | 10 | 28 | 623 | 27 | 592 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123930 | A0A072VKR1 | 94.904 | 628 | 10 | 3 | 1 | 625 | 1 | 609 | 0.0 | 1186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033610 | Msa0123930 | 0.930561 | 1.368495e-93 | -8.615850e-47 |
| Msa0033640 | Msa0123930 | 0.937080 | 6.184878e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123930 | MtrunA17_Chr1g0184781 | 94.904 | 628 | 10 | 3 | 1 | 625 | 1 | 609 | 0.0 | 1186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123930 | AT3G54650.1 | 57.050 | 617 | 193 | 10 | 28 | 623 | 27 | 592 | 0.0 | 627 |
Find 165 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATGCTTTCTCTTGTTCT+TGG | 0.137595 | 1_3:+51292877 | Msa0123930:CDS |
| AATACTTTATTTCATTAAAA+AGG | 0.210296 | 1_3:-51294905 | None:intergenic |
| ATTGCCACTTCTTGAACTTA+TGG | 0.229544 | 1_3:+51293405 | Msa0123930:CDS |
| AGATTCAGATCATTGAGTTC+TGG | 0.289246 | 1_3:-51293708 | None:intergenic |
| ATGCCCTAATCTGGAATCTA+TGG | 0.302684 | 1_3:+51291281 | Msa0123930:CDS |
| TCTTGTAGAAATCTGCATTC+AGG | 0.308829 | 1_3:+51293735 | Msa0123930:CDS |
| ATAAGGAACCCGAACCCTTT+TGG | 0.310964 | 1_3:-51294235 | None:intergenic |
| ACCTCCGGCGGGATTGTTAT+CGG | 0.327236 | 1_3:+51290680 | Msa0123930:CDS |
| GGAGTTGAAGCTTAGGGTTC+CGG | 0.327873 | 1_3:+51290761 | Msa0123930:CDS |
| AGATTACTTGAAGTCACATT+AGG | 0.329783 | 1_3:-51293273 | None:intergenic |
| ACCTCGCCACTAAGTAAATA+AGG | 0.331974 | 1_3:-51294252 | None:intergenic |
| CTCAGTTTGTGGGGTTGCAC+TGG | 0.333295 | 1_3:+51293568 | Msa0123930:CDS |
| TTCTGGGCAGTTTAAGTATA+GGG | 0.340833 | 1_3:-51293691 | None:intergenic |
| TTCAATTTAGGCTCTATAAC+TGG | 0.344012 | 1_3:+51294796 | Msa0123930:three_prime_UTR |
| ATGGAAGGTTGTTCTAATCT+AGG | 0.345750 | 1_3:+51291926 | Msa0123930:CDS |
| TTCTGTACCGTCTGCGGTCT+CGG | 0.351169 | 1_3:+51290419 | Msa0123930:CDS |
| CTGACTTTGTTACCTGACTT+TGG | 0.352864 | 1_3:-51293935 | None:intergenic |
| CGGGTTCCTTATTTACTTAG+TGG | 0.355932 | 1_3:+51294246 | Msa0123930:CDS |
| CGTAACTATGATTGAAGGAT+TGG | 0.363145 | 1_3:+51292209 | Msa0123930:CDS |
| TTGGAAAATGTTCATGCATC+AGG | 0.363317 | 1_3:+51293885 | Msa0123930:CDS |
| TATGTTTGATGATTAGCTTT+TGG | 0.368030 | 1_3:-51293531 | None:intergenic |
| GTGGTGGTTGTGGTGGAAAC+TGG | 0.370531 | 1_3:-51290366 | None:intergenic |
| AGGCGAGCGCTTTCGTTTGA+CGG | 0.379281 | 1_3:+51290468 | Msa0123930:CDS |
| TCTCCATAGATTCCAGATTA+GGG | 0.385939 | 1_3:-51291284 | None:intergenic |
| ACAAACTGAGTTTCTTTAAA+CGG | 0.387577 | 1_3:-51293555 | None:intergenic |
| AGGTCAAGCAACTCTAGATT+TGG | 0.388297 | 1_3:-51292946 | None:intergenic |
| GATTCAGATCATTGAGTTCT+GGG | 0.393116 | 1_3:-51293707 | None:intergenic |
| GATGAGATACAGTTTCATCT+AGG | 0.395077 | 1_3:-51294822 | None:intergenic |
| AGAAGGCGAATGGTTATCTA+TGG | 0.396892 | 1_3:-51294193 | None:intergenic |
| GATTACTTGAAGTCACATTA+GGG | 0.397659 | 1_3:-51293272 | None:intergenic |
| GCGGTTTGCCTGGGAATTTA+CGG | 0.398834 | 1_3:+51290637 | Msa0123930:CDS |
| CGACGGAGGAGTTGAAGCTT+AGG | 0.401872 | 1_3:+51290754 | Msa0123930:CDS |
| CTGATGGCTCCAAAAGGGTT+CGG | 0.402880 | 1_3:+51294226 | Msa0123930:CDS |
| CTCTTACTGCTGCTCAATTG+AGG | 0.403465 | 1_3:+51292301 | Msa0123930:CDS |
| GTGGTTGGATCTGGGAAATT+AGG | 0.404794 | 1_3:-51293451 | None:intergenic |
| AGATGGAGATGGAGATTTGT+TGG | 0.417613 | 1_3:+51290566 | Msa0123930:CDS |
| AGATGGAGATTTGTTGGATC+TGG | 0.419722 | 1_3:+51290572 | Msa0123930:CDS |
| TGTTCATGCATCAGGTTGTC+AGG | 0.425658 | 1_3:+51293893 | Msa0123930:CDS |
| AAAGCCGCATTGAAGCTATA+TGG | 0.425901 | 1_3:-51292260 | None:intergenic |
| GGCATAAGTGACAGCGGCAT+TGG | 0.430264 | 1_3:+51293195 | Msa0123930:CDS |
| TGATGGCTCCAAAAGGGTTC+GGG | 0.430597 | 1_3:+51294227 | Msa0123930:CDS |
| TTTGAGGCTTTCGCTTAGAA+TGG | 0.430849 | 1_3:+51290836 | Msa0123930:CDS |
| ATCTCCATAGATTCCAGATT+AGG | 0.431846 | 1_3:-51291285 | None:intergenic |
| GTTCTGGGCAGTTTAAGTAT+AGG | 0.432059 | 1_3:-51293692 | None:intergenic |
| TACCGGCGTGGTGGTGGTTG+TGG | 0.432893 | 1_3:-51290376 | None:intergenic |
| TTTGTGGGGTTGCACTGGCT+TGG | 0.438971 | 1_3:+51293573 | Msa0123930:CDS |
| ACCGCCACCAATCGGATCAA+TGG | 0.439840 | 1_3:+51291321 | Msa0123930:CDS |
| TATTACTTGTTTGGTAGCTA+AGG | 0.439892 | 1_3:-51294769 | None:intergenic |
| CCATCAGGTAGACGTTTAGA+AGG | 0.443237 | 1_3:-51294210 | None:intergenic |
| ATCGGCGGCGAAGGTGTGTA+AGG | 0.445828 | 1_3:+51290698 | Msa0123930:CDS |
| GTCAACCACCGTCGAATCTC+AGG | 0.446033 | 1_3:+51290448 | Msa0123930:CDS |
| CATGTATGAACTATGGTCTA+TGG | 0.455749 | 1_3:+51294872 | Msa0123930:three_prime_UTR |
| ATTGATTCGAGCGGTTTGCC+TGG | 0.459369 | 1_3:+51290627 | Msa0123930:CDS |
| GAAGCTTAGGGTTCCGGTGA+TGG | 0.459433 | 1_3:+51290767 | Msa0123930:CDS |
| AAAGCGTATGGCGATGGTGA+TGG | 0.465639 | 1_3:+51290537 | Msa0123930:CDS |
| GTTGCTTCAGTGCCCCACTT+TGG | 0.468923 | 1_3:+51293866 | Msa0123930:CDS |
| TTTAAAGAAACTCAGTTTGT+GGG | 0.470137 | 1_3:+51293558 | Msa0123930:CDS |
| TGGAAGGTTGTTCTAATCTA+GGG | 0.472778 | 1_3:+51291927 | Msa0123930:CDS |
| GTCTACCTGATGGCTCCAAA+AGG | 0.478330 | 1_3:+51294220 | Msa0123930:CDS |
| AGAAATACATGTATGAACTA+TGG | 0.480816 | 1_3:+51294865 | Msa0123930:three_prime_UTR |
| CCGCCACCAATCGGATCAAT+GGG | 0.483382 | 1_3:+51291322 | Msa0123930:CDS |
| TCAATCTCCACATCTAGATC+TGG | 0.486325 | 1_3:-51290609 | None:intergenic |
| GTAACTATGATTGAAGGATT+GGG | 0.491002 | 1_3:+51292210 | Msa0123930:CDS |
| CATCTAGTTTGTGTACACTT+TGG | 0.492135 | 1_3:+51291966 | Msa0123930:CDS |
| TTTCGTCAGTGGTTGGATCT+GGG | 0.493000 | 1_3:-51293459 | None:intergenic |
| CGAAGGTGTGTAAGGGATGG+AGG | 0.497940 | 1_3:+51290706 | Msa0123930:CDS |
| TGTATAAAATAAAACACGTT+CGG | 0.499179 | 1_3:-51294703 | None:intergenic |
| AGAACAACCTTCCATCTTGA+GGG | 0.499739 | 1_3:-51291918 | None:intergenic |
| CGGCGTGGTGGTGGTTGTGG+TGG | 0.504153 | 1_3:-51290373 | None:intergenic |
| GACCTCGTAACTATGATTGA+AGG | 0.504968 | 1_3:+51292204 | Msa0123930:CDS |
| GCCTGGGAATTTACGGTGGG+AGG | 0.505266 | 1_3:+51290644 | Msa0123930:CDS |
| TATATGCTGTAGATTTGCAC+TGG | 0.509942 | 1_3:-51293506 | None:intergenic |
| TCTTTGACACCGCCACCAAT+CGG | 0.510913 | 1_3:+51291313 | Msa0123930:CDS |
| GACGATAAAGCGTATGGCGA+TGG | 0.511114 | 1_3:+51290531 | Msa0123930:CDS |
| ACTTCAAATTCAATAAGAAT+CGG | 0.511590 | 1_3:-51292988 | None:intergenic |
| GGGATTGTTATCGGCGGCGA+AGG | 0.511793 | 1_3:+51290689 | Msa0123930:CDS |
| AGTTGAGGCTATCCAAAGTC+AGG | 0.514705 | 1_3:+51293923 | Msa0123930:CDS |
| TGAATCTACCGGCGTGGTGG+TGG | 0.515249 | 1_3:-51290382 | None:intergenic |
| TCGATGCTGCAGAAATGTCC+TGG | 0.517320 | 1_3:+51290810 | Msa0123930:CDS |
| ATTACTTGTTTGGTAGCTAA+GGG | 0.517417 | 1_3:-51294768 | None:intergenic |
| CATAGTTACGAGGTCAGTGC+TGG | 0.522076 | 1_3:-51292196 | None:intergenic |
| GACGGAGGAGTTGAAGCTTA+GGG | 0.522111 | 1_3:+51290755 | Msa0123930:CDS |
| TTGATTCGAGCGGTTTGCCT+GGG | 0.522215 | 1_3:+51290628 | Msa0123930:CDS |
| GTTTAAAGAAACTCAGTTTG+TGG | 0.528026 | 1_3:+51293557 | Msa0123930:CDS |
| GGCGAATGGTTATCTATGGC+AGG | 0.528182 | 1_3:-51294189 | None:intergenic |
| CCCATTGATCCGATTGGTGG+CGG | 0.529128 | 1_3:-51291322 | None:intergenic |
| TAGAACAACCTTCCATCTTG+AGG | 0.531968 | 1_3:-51291919 | None:intergenic |
| AAAATTAGAATAAGTTTCAA+GGG | 0.539109 | 1_3:-51294658 | None:intergenic |
| TGGGAAATTAGGATCACATA+TGG | 0.540618 | 1_3:-51293440 | None:intergenic |
| TTGTCAGGATTTGTTAGTTG+AGG | 0.543433 | 1_3:+51293908 | Msa0123930:CDS |
| TGATAATGCAGGGATGAACT+AGG | 0.544759 | 1_3:+51291863 | Msa0123930:intron |
| GGGAGACGGCGAGGAAGCTG+TGG | 0.544858 | 1_3:+51290727 | Msa0123930:CDS |
| ATGAGATACAGTTTCATCTA+GGG | 0.546711 | 1_3:-51294821 | None:intergenic |
| ACCTCCCACCGTAAATTCCC+AGG | 0.547327 | 1_3:-51290645 | None:intergenic |
| TCTGCACTCTCTGTCTAAGA+TGG | 0.548470 | 1_3:+51291997 | Msa0123930:CDS |
| AAACCTCAAAACCCTCAAGA+TGG | 0.552260 | 1_3:+51291907 | Msa0123930:CDS |
| GTGTAAGGGATGGAGGGAGA+CGG | 0.554978 | 1_3:+51290713 | Msa0123930:CDS |
| GGTCTTGACGATCGAGGCAG+TGG | 0.555629 | 1_3:+51290489 | Msa0123930:CDS |
| AGCGAAAGCCTCAAAATCCC+AGG | 0.560281 | 1_3:-51290828 | None:intergenic |
| GGCTTTCGCTTAGAATGGAA+AGG | 0.562043 | 1_3:+51290841 | Msa0123930:CDS |
| GATGGAGATGGAGATGGAGA+TGG | 0.562789 | 1_3:+51290555 | Msa0123930:CDS |
| TTGAGGAGGTTACCTCCGGC+GGG | 0.564333 | 1_3:+51290669 | Msa0123930:CDS |
| TCTACCTGATGGCTCCAAAA+GGG | 0.566567 | 1_3:+51294221 | Msa0123930:CDS |
| CCAACCACTGACGAAAATGA+TGG | 0.570998 | 1_3:+51293466 | Msa0123930:CDS |
| GTTCCGGTGATGGTTCATGT+TGG | 0.571801 | 1_3:+51290777 | Msa0123930:CDS |
| CTCTAGATTTGGATAGCTTG+AGG | 0.571915 | 1_3:-51292935 | None:intergenic |
| CGATGCTGCAGAAATGTCCT+GGG | 0.572129 | 1_3:+51290811 | Msa0123930:CDS |
| TAGAGTTGCTTGACCTCAGT+GGG | 0.573574 | 1_3:+51292953 | Msa0123930:CDS |
| CCTTCTAAACGTCTACCTGA+TGG | 0.573862 | 1_3:+51294210 | Msa0123930:CDS |
| TCCTTATTTACTTAGTGGCG+AGG | 0.573887 | 1_3:+51294251 | Msa0123930:CDS |
| TCACATTAGGGCAAAGAGCA+AGG | 0.574084 | 1_3:-51293260 | None:intergenic |
| CGGCGAAGGTGTGTAAGGGA+TGG | 0.576084 | 1_3:+51290703 | Msa0123930:CDS |
| GTAATACCCATTGATCCGAT+TGG | 0.582458 | 1_3:-51291328 | None:intergenic |
| GAAGGTGTGTAAGGGATGGA+GGG | 0.586174 | 1_3:+51290707 | Msa0123930:CDS |
| CGATGAATCTACCGGCGTGG+TGG | 0.586581 | 1_3:-51290385 | None:intergenic |
| AATCCAACATGAACCATCAC+CGG | 0.587151 | 1_3:-51290780 | None:intergenic |
| TATGGCGATGGTGATGGAGA+TGG | 0.588333 | 1_3:+51290543 | Msa0123930:CDS |
| AGCGCTCGCCTGAGATTCGA+CGG | 0.592072 | 1_3:-51290456 | None:intergenic |
| AGGCTTGACGATAAAGCGTA+TGG | 0.593353 | 1_3:+51290525 | Msa0123930:CDS |
| ATACCCATTGATCCGATTGG+TGG | 0.594827 | 1_3:-51291325 | None:intergenic |
| CTCAAAACCCTCAAGATGGA+AGG | 0.596195 | 1_3:+51291911 | Msa0123930:CDS |
| TATCGTTTCTGTACCGTCTG+CGG | 0.597284 | 1_3:+51290413 | Msa0123930:CDS |
| GTTTGCCTGGGAATTTACGG+TGG | 0.598839 | 1_3:+51290640 | Msa0123930:CDS |
| CAGTCCATAAGTTCAAGAAG+TGG | 0.599028 | 1_3:-51293409 | None:intergenic |
| ACTTCCGTGTAATGTGCTTG+TGG | 0.602265 | 1_3:+51294627 | Msa0123930:CDS |
| AGTGAAATCTCTCTCAGCTG+TGG | 0.603712 | 1_3:-51292150 | None:intergenic |
| AAACGTGGTAGTTACAATTG+TGG | 0.606563 | 1_3:+51290297 | Msa0123930:CDS |
| AATTGCAGCAACAGATGCAT+CGG | 0.609470 | 1_3:-51292911 | None:intergenic |
| GATGGTGATGGAGATGGAGA+TGG | 0.610238 | 1_3:+51290549 | Msa0123930:CDS |
| AGGGATGGAGGGAGACGGCG+AGG | 0.611493 | 1_3:+51290718 | Msa0123930:CDS |
| TTTGAGGAGGTTACCTCCGG+CGG | 0.615064 | 1_3:+51290668 | Msa0123930:CDS |
| GCAGTGGACTTGATCTGTTG+AGG | 0.615827 | 1_3:+51290505 | Msa0123930:CDS |
| GCCGCGTCGCAATCTTCACG+CGG | 0.616141 | 1_3:+51290234 | Msa0123930:CDS |
| CGAATCACCGAGACCGCAGA+CGG | 0.619376 | 1_3:-51290426 | None:intergenic |
| CAGTCCACAAGCACATTACA+CGG | 0.620998 | 1_3:-51294631 | None:intergenic |
| TTTGCCTGGGAATTTACGGT+GGG | 0.625899 | 1_3:+51290641 | Msa0123930:CDS |
| TTAAAGAAACTCAGTTTGTG+GGG | 0.625994 | 1_3:+51293559 | Msa0123930:CDS |
| TCGGCGGCGAAGGTGTGTAA+GGG | 0.627171 | 1_3:+51290699 | Msa0123930:CDS |
| GCCGATAACAATCCCGCCGG+AGG | 0.628315 | 1_3:-51290681 | None:intergenic |
| GAGGAAGCTGTGGAAAGCGA+CGG | 0.628768 | 1_3:+51290737 | Msa0123930:CDS |
| GCGTGAAGATTGCGACGCGG+CGG | 0.630010 | 1_3:-51290232 | None:intergenic |
| GCCGCCGATAACAATCCCGC+CGG | 0.632815 | 1_3:-51290684 | None:intergenic |
| GGAAGGTTGTTCTAATCTAG+GGG | 0.635613 | 1_3:+51291928 | Msa0123930:CDS |
| AGTTACAATTGTGGACGTTG+TGG | 0.636586 | 1_3:+51290306 | Msa0123930:CDS |
| GTAGACGTTTAGAAGGCGAA+TGG | 0.637230 | 1_3:-51294203 | None:intergenic |
| TCTAGAACCAGATCTAGATG+TGG | 0.637574 | 1_3:+51290602 | Msa0123930:CDS |
| TTTGACGGTCTTGACGATCG+AGG | 0.640367 | 1_3:+51290483 | Msa0123930:CDS |
| CTTCTTGAACTTATGGACTG+TGG | 0.641932 | 1_3:+51293412 | Msa0123930:CDS |
| ATAGATAACGATGAATCTAC+CGG | 0.642583 | 1_3:-51290393 | None:intergenic |
| CACCACAACCACCACCACGC+CGG | 0.643297 | 1_3:+51290374 | Msa0123930:CDS |
| CTAGAGTTGCTTGACCTCAG+TGG | 0.647313 | 1_3:+51292952 | Msa0123930:CDS |
| GAAGCTGTGGAAAGCGACGG+AGG | 0.650091 | 1_3:+51290740 | Msa0123930:CDS |
| GAAGGTTGTTCTAATCTAGG+GGG | 0.651856 | 1_3:+51291929 | Msa0123930:CDS |
| TTTCTGTATGGTGATGAAGG+TGG | 0.661901 | 1_3:+51294679 | Msa0123930:three_prime_UTR |
| TACACAAACTAGATGAAGTG+AGG | 0.665136 | 1_3:-51291958 | None:intergenic |
| TCCGGCGGGATTGTTATCGG+CGG | 0.674341 | 1_3:+51290683 | Msa0123930:CDS |
| GCCGCGTGAAGATTGCGACG+CGG | 0.689777 | 1_3:-51290235 | None:intergenic |
| GCGTCGCAATCTTCACGCGG+CGG | 0.696177 | 1_3:+51290237 | Msa0123930:CDS |
| ATCCTTCAATCATAGTTACG+AGG | 0.706553 | 1_3:-51292206 | None:intergenic |
| TAACGATGAATCTACCGGCG+TGG | 0.708007 | 1_3:-51290388 | None:intergenic |
| AGATCTGGCATAAGTGACAG+CGG | 0.711325 | 1_3:+51293189 | Msa0123930:intron |
| GCTCGCCTGAGATTCGACGG+TGG | 0.742453 | 1_3:-51290453 | None:intergenic |
| GATGTGGAGATTGATTCGAG+CGG | 0.746668 | 1_3:+51290618 | Msa0123930:CDS |
| ACATCCATATAGCTTCAATG+CGG | 0.786151 | 1_3:+51292256 | Msa0123930:CDS |
| GTACAGATTCATACCCACTG+AGG | 0.831236 | 1_3:-51292966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTCAATTTATTAATTAAT+TGG | + | chr1_3:51291039-51291058 | Msa0123930:intron | 10.0% |
| !! | AATTTATTAATTAATTGGTT+TGG | + | chr1_3:51291044-51291063 | Msa0123930:intron | 10.0% |
| !!! | AAATAAGAATATGTTTTAAA+TGG | - | chr1_3:51293629-51293648 | None:intergenic | 10.0% |
| !!! | TTTAAAACATATTCTTATTT+AGG | + | chr1_3:51293629-51293648 | Msa0123930:intron | 10.0% |
| !!! | GATTATTTTCATTTATTAAT+TGG | + | chr1_3:51293831-51293850 | Msa0123930:intron | 10.0% |
| !!! | AAGTAATAATTTTTCAATTT+AGG | + | chr1_3:51294784-51294803 | Msa0123930:three_prime_UTR | 10.0% |
| !!! | AATACTTTATTTCATTAAAA+AGG | - | chr1_3:51294908-51294927 | None:intergenic | 10.0% |
| !! | CTAATTTAATCATGAATTAA+TGG | + | chr1_3:51290924-51290943 | Msa0123930:intron | 15.0% |
| !! | AGCATTGTAATTATAATAAT+TGG | - | chr1_3:51292591-51292610 | None:intergenic | 15.0% |
| !! | TATACACACTAATAAAAATT+AGG | + | chr1_3:51292618-51292637 | Msa0123930:intron | 15.0% |
| !!! | AATCAATCATACAATTTTAA+AGG | - | chr1_3:51293815-51293834 | None:intergenic | 15.0% |
| !!! | GAACATTGATTTATTAATTA+TGG | - | chr1_3:51293988-51294007 | None:intergenic | 15.0% |
| !! | AAAATTAGAATAAGTTTCAA+GGG | - | chr1_3:51294661-51294680 | None:intergenic | 15.0% |
| !! | AAAAATTAGAATAAGTTTCA+AGG | - | chr1_3:51294662-51294681 | None:intergenic | 15.0% |
| !! | TTGAAAAATTATTACTTGTT+TGG | - | chr1_3:51294781-51294800 | None:intergenic | 15.0% |
| !!! | TTTCTTTCCTTTTTTTGTAT+CGG | - | chr1_3:51290280-51290299 | None:intergenic | 20.0% |
| !! | AATTAATCTTATTCTTAACG+TGG | - | chr1_3:51290884-51290903 | None:intergenic | 20.0% |
| !!! | TTAATTGGTTTGGTTATAAA+AGG | + | chr1_3:51291054-51291073 | Msa0123930:intron | 20.0% |
| !! | AAAAGGATGATGAAAAAAAT+TGG | + | chr1_3:51291071-51291090 | Msa0123930:intron | 20.0% |
| !! | ACATAGAAACAACAAAAAAA+GGG | - | chr1_3:51291382-51291401 | None:intergenic | 20.0% |
| !!! | TTACAAACTTTTATAACAGA+TGG | - | chr1_3:51292398-51292417 | None:intergenic | 20.0% |
| !! | TAAAGGTTATATATTTACCA+TGG | + | chr1_3:51292711-51292730 | Msa0123930:intron | 20.0% |
| !! | AAAGGTTATATATTTACCAT+GGG | + | chr1_3:51292712-51292731 | Msa0123930:intron | 20.0% |
| !! | ACTTCAAATTCAATAAGAAT+CGG | - | chr1_3:51292991-51293010 | None:intergenic | 20.0% |
| !!! | TTTTGAAAATGTATTTACCT+TGG | + | chr1_3:51293022-51293041 | Msa0123930:intron | 20.0% |
| !! | TTTAAGAAATCAAGTTTGAT+CGG | + | chr1_3:51293153-51293172 | Msa0123930:intron | 20.0% |
| !!! | TTCTTTTCAAATTTATATGC+AGG | + | chr1_3:51293668-51293687 | Msa0123930:intron | 20.0% |
| !! | TTTGTTTGATATTTATTCCA+GGG | + | chr1_3:51294107-51294126 | Msa0123930:intron | 20.0% |
| !!! | GTATATTTTAAAATAGAACC+AGG | - | chr1_3:51294136-51294155 | None:intergenic | 20.0% |
| !! | TTTAAAAACAGTGTTTATCT+AGG | + | chr1_3:51294304-51294323 | Msa0123930:intron | 20.0% |
| !!! | AAGAAAAATTGGATTTTCTA+GGG | + | chr1_3:51294458-51294477 | Msa0123930:intron | 20.0% |
| !!! | CTTATTCTAATTTTTCTGTA+TGG | + | chr1_3:51294667-51294686 | Msa0123930:three_prime_UTR | 20.0% |
| !! | TGTATAAAATAAAACACGTT+CGG | - | chr1_3:51294706-51294725 | None:intergenic | 20.0% |
| !!! | ACTTTATTTCATTAAAAAGG+AGG | - | chr1_3:51294905-51294924 | None:intergenic | 20.0% |
| !!! | TTACAGTTATGTCCTTTTTT+GGG | - | chr1_3:51290336-51290355 | None:intergenic | 25.0% |
| !!! | ATTACAGTTATGTCCTTTTT+TGG | - | chr1_3:51290337-51290356 | None:intergenic | 25.0% |
| ! | CACATAGAAACAACAAAAAA+AGG | - | chr1_3:51291383-51291402 | None:intergenic | 25.0% |
| !! | TTCTATGTGTAATGAGTTTT+CGG | + | chr1_3:51291394-51291413 | Msa0123930:intron | 25.0% |
| ! | TCTAAGTATGCAAATAATGT+TGG | + | chr1_3:51291427-51291446 | Msa0123930:intron | 25.0% |
| ! | ATTTATACAATGTGAAAGTG+AGG | + | chr1_3:51291459-51291478 | Msa0123930:intron | 25.0% |
| ! | CAAAGTTACAATCTATAACA+TGG | - | chr1_3:51291636-51291655 | None:intergenic | 25.0% |
| ! | AACGAAATAAAACAGAAATC+TGG | - | chr1_3:51291727-51291746 | None:intergenic | 25.0% |
| ! | ACATTATTAGCATATATGCA+AGG | + | chr1_3:51291788-51291807 | Msa0123930:intron | 25.0% |
| ! | CATTAAAGAACAACAAAGAA+AGG | - | chr1_3:51292032-51292051 | None:intergenic | 25.0% |
| !! | AACCAATGCTTTTAAATTGT+AGG | + | chr1_3:51292116-51292135 | Msa0123930:intron | 25.0% |
| !! | TACCTACAATTTAAAAGCAT+TGG | - | chr1_3:51292121-51292140 | None:intergenic | 25.0% |
| ! | ACAATAAATTGCCAAAGAAA+AGG | - | chr1_3:51292331-51292350 | None:intergenic | 25.0% |
| ! | ATTATTTCAGACACCATATT+TGG | - | chr1_3:51292562-51292581 | None:intergenic | 25.0% |
| ! | TTTCGGATATTCATAACTTT+GGG | - | chr1_3:51292668-51292687 | None:intergenic | 25.0% |
| ! | ATTTCGGATATTCATAACTT+TGG | - | chr1_3:51292669-51292688 | None:intergenic | 25.0% |
| ! | AAGGTTATATATTTACCATG+GGG | + | chr1_3:51292713-51292732 | Msa0123930:intron | 25.0% |
| ! | ATTAATATCTTCAACTGAGT+GGG | - | chr1_3:51292825-51292844 | None:intergenic | 25.0% |
| ! | CTTCGAATGTAATTTATCTA+TGG | - | chr1_3:51293077-51293096 | None:intergenic | 25.0% |
| ! | TGATTTCTTAAACAAAGACA+TGG | - | chr1_3:51293145-51293164 | None:intergenic | 25.0% |
| !! | TATGTTTTGTGAAATAATCG+AGG | - | chr1_3:51293309-51293328 | None:intergenic | 25.0% |
| !!! | TATGTTTGATGATTAGCTTT+TGG | - | chr1_3:51293534-51293553 | None:intergenic | 25.0% |
| ! | ACAAACTGAGTTTCTTTAAA+CGG | - | chr1_3:51293558-51293577 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACTCAGTTTGT+GGG | + | chr1_3:51293558-51293577 | Msa0123930:CDS | 25.0% |
| ! | GCAACAAATTATTACAAAAC+AGG | - | chr1_3:51293777-51293796 | None:intergenic | 25.0% |
| !! | ATTTATTAATTGGTTCAGAG+AGG | + | chr1_3:51293841-51293860 | Msa0123930:intron | 25.0% |
| ! | GTTTGTTTGATATTTATTCC+AGG | + | chr1_3:51294106-51294125 | Msa0123930:intron | 25.0% |
| !!! | ATACTTAATGATTTGTTTGC+AGG | + | chr1_3:51294152-51294171 | Msa0123930:intron | 25.0% |
| !! | AAAATCCAATTTTTCTTCTG+CGG | - | chr1_3:51294455-51294474 | None:intergenic | 25.0% |
| !! | GAAGAAAAATTGGATTTTCT+AGG | + | chr1_3:51294457-51294476 | Msa0123930:intron | 25.0% |
| ! | AGAAATACATGTATGAACTA+TGG | + | chr1_3:51294865-51294884 | Msa0123930:three_prime_UTR | 25.0% |
| ACAAAAAAAGGAAAGAAACG+TGG | + | chr1_3:51290282-51290301 | Msa0123930:CDS | 30.0% | |
| ATAGATAACGATGAATCTAC+CGG | - | chr1_3:51290396-51290415 | None:intergenic | 30.0% | |
| AGATCGATGCACAAAAAAAT+AGG | + | chr1_3:51291006-51291025 | Msa0123930:intron | 30.0% | |
| TAACACGGATCTAAAAATCT+AGG | - | chr1_3:51291536-51291555 | None:intergenic | 30.0% | |
| !! | TAGATTTTTAGATCCGTGTT+AGG | + | chr1_3:51291535-51291554 | Msa0123930:intron | 30.0% |
| CTGAAACTTAAATCTTCCAT+GGG | - | chr1_3:51291692-51291711 | None:intergenic | 30.0% | |
| ! | TCTGAAACTTAAATCTTCCA+TGG | - | chr1_3:51291693-51291712 | None:intergenic | 30.0% |
| GAAATAAAACAGAAATCTGG+AGG | - | chr1_3:51291724-51291743 | None:intergenic | 30.0% | |
| ! | TTGTTCAACTATGATAATGC+AGG | + | chr1_3:51291852-51291871 | Msa0123930:intron | 30.0% |
| ! | TGTTCAACTATGATAATGCA+GGG | + | chr1_3:51291853-51291872 | Msa0123930:intron | 30.0% |
| ! | TTCTTTTGTCAGCAACAAAT+CGG | - | chr1_3:51291889-51291908 | None:intergenic | 30.0% |
| TCAATATGAATGCAATCTCA+GGG | - | chr1_3:51292084-51292103 | None:intergenic | 30.0% | |
| TTCAATATGAATGCAATCTC+AGG | - | chr1_3:51292085-51292104 | None:intergenic | 30.0% | |
| GTAACTATGATTGAAGGATT+GGG | + | chr1_3:51292210-51292229 | Msa0123930:CDS | 30.0% | |
| ! | GTCTGTTTTCATGTTGTTAT+TGG | + | chr1_3:51292349-51292368 | Msa0123930:intron | 30.0% |
| !! | CTATGTTTGGTCTTTTACAA+TGG | - | chr1_3:51292513-51292532 | None:intergenic | 30.0% |
| CATTGTAAAAGACCAAACAT+AGG | + | chr1_3:51292511-51292530 | Msa0123930:intron | 30.0% | |
| CATTAATATCTTCAACTGAG+TGG | - | chr1_3:51292826-51292845 | None:intergenic | 30.0% | |
| ATTCTGTCCAAATATACATC+AGG | + | chr1_3:51292848-51292867 | Msa0123930:intron | 30.0% | |
| TTCTGTCCAAATATACATCA+GGG | + | chr1_3:51292849-51292868 | Msa0123930:intron | 30.0% | |
| !! | GAAGTCTTTTAAGTGTTTCA+GGG | - | chr1_3:51293239-51293258 | None:intergenic | 30.0% |
| !! | AGAAGTCTTTTAAGTGTTTC+AGG | - | chr1_3:51293240-51293259 | None:intergenic | 30.0% |
| GATTACTTGAAGTCACATTA+GGG | - | chr1_3:51293275-51293294 | None:intergenic | 30.0% | |
| AGATTACTTGAAGTCACATT+AGG | - | chr1_3:51293276-51293295 | None:intergenic | 30.0% | |
| GTTTAAAGAAACTCAGTTTG+TGG | + | chr1_3:51293557-51293576 | Msa0123930:CDS | 30.0% | |
| TTAAAGAAACTCAGTTTGTG+GGG | + | chr1_3:51293559-51293578 | Msa0123930:CDS | 30.0% | |
| TACAAAACAGGAACATGAAA+GGG | - | chr1_3:51293765-51293784 | None:intergenic | 30.0% | |
| TTACAAAACAGGAACATGAA+AGG | - | chr1_3:51293766-51293785 | None:intergenic | 30.0% | |
| !! | ATAATTTGTTGCAACTTACC+AGG | + | chr1_3:51293785-51293804 | Msa0123930:intron | 30.0% |
| !! | TACAATTTTAAAGGAAGTCC+TGG | - | chr1_3:51293806-51293825 | None:intergenic | 30.0% |
| TGCAGAGAAAATTAGTTCAA+GGG | - | chr1_3:51294061-51294080 | None:intergenic | 30.0% | |
| ATGCAGAGAAAATTAGTTCA+AGG | - | chr1_3:51294062-51294081 | None:intergenic | 30.0% | |
| ! | AAACAGTGTTTATCTAGGAT+CGG | + | chr1_3:51294309-51294328 | Msa0123930:intron | 30.0% |
| AAAGTAAGTTTGTGCATCAA+TGG | + | chr1_3:51294380-51294399 | Msa0123930:intron | 30.0% | |
| !!! | TTTTCAAGTCATTCTGTACA+TGG | + | chr1_3:51294486-51294505 | Msa0123930:intron | 30.0% |
| !! | ATTTTTCTGTATGGTGATGA+AGG | + | chr1_3:51294676-51294695 | Msa0123930:three_prime_UTR | 30.0% |
| ! | ATTACTTGTTTGGTAGCTAA+GGG | - | chr1_3:51294771-51294790 | None:intergenic | 30.0% |
| ! | TATTACTTGTTTGGTAGCTA+AGG | - | chr1_3:51294772-51294791 | None:intergenic | 30.0% |
| TTCAATTTAGGCTCTATAAC+TGG | + | chr1_3:51294796-51294815 | Msa0123930:three_prime_UTR | 30.0% | |
| ATGAGATACAGTTTCATCTA+GGG | - | chr1_3:51294824-51294843 | None:intergenic | 30.0% | |
| GAAAGCTCCGATACAAAAAA+AGG | + | chr1_3:51290270-51290289 | Msa0123930:CDS | 35.0% | |
| AAACGTGGTAGTTACAATTG+TGG | + | chr1_3:51290297-51290316 | Msa0123930:CDS | 35.0% | |
| !!! | AGTTATGTCCTTTTTTGGGA+AGG | - | chr1_3:51290332-51290351 | None:intergenic | 35.0% |
| TCTTATTCTTAACGTGGATC+TGG | - | chr1_3:51290878-51290897 | None:intergenic | 35.0% | |
| !!! | TGATTTTGATTCAACGATGC+TGG | + | chr1_3:51291242-51291261 | Msa0123930:CDS | 35.0% |
| TCTCCATAGATTCCAGATTA+GGG | - | chr1_3:51291287-51291306 | None:intergenic | 35.0% | |
| ATCTCCATAGATTCCAGATT+AGG | - | chr1_3:51291288-51291307 | None:intergenic | 35.0% | |
| CCAATTAACAATGCCTAACA+CGG | - | chr1_3:51291551-51291570 | None:intergenic | 35.0% | |
| TTCAAATGCCACGATGTAAA+TGG | + | chr1_3:51291588-51291607 | Msa0123930:intron | 35.0% | |
| GTAAATGGATGGAATCTTGA+TGG | + | chr1_3:51291603-51291622 | Msa0123930:intron | 35.0% | |
| ATGGAAGGTTGTTCTAATCT+AGG | + | chr1_3:51291926-51291945 | Msa0123930:CDS | 35.0% | |
| TGGAAGGTTGTTCTAATCTA+GGG | + | chr1_3:51291927-51291946 | Msa0123930:CDS | 35.0% | |
| TACACAAACTAGATGAAGTG+AGG | - | chr1_3:51291961-51291980 | None:intergenic | 35.0% | |
| ! | CATCTAGTTTGTGTACACTT+TGG | + | chr1_3:51291966-51291985 | Msa0123930:CDS | 35.0% |
| !! | AAAAGCATTGGTTAGCAACT+AGG | - | chr1_3:51292109-51292128 | None:intergenic | 35.0% |
| ATCCTTCAATCATAGTTACG+AGG | - | chr1_3:51292209-51292228 | None:intergenic | 35.0% | |
| CGTAACTATGATTGAAGGAT+TGG | + | chr1_3:51292209-51292228 | Msa0123930:CDS | 35.0% | |
| ACATCCATATAGCTTCAATG+CGG | + | chr1_3:51292256-51292275 | Msa0123930:CDS | 35.0% | |
| ! | ATTGAGGTTTGCCTTTTCTT+TGG | + | chr1_3:51292317-51292336 | Msa0123930:intron | 35.0% |
| AGATGGAATTTCAACTCATG+TGG | - | chr1_3:51292381-51292400 | None:intergenic | 35.0% | |
| !! | GTTTGGTCTTTTACAATGGT+TGG | - | chr1_3:51292509-51292528 | None:intergenic | 35.0% |
| ATTCGACATGATCCTATGTT+TGG | - | chr1_3:51292526-51292545 | None:intergenic | 35.0% | |
| TTTATACTGCCTGCCAAATA+TGG | + | chr1_3:51292546-51292565 | Msa0123930:intron | 35.0% | |
| CAGTTAAAGGATCGGAATTT+CGG | - | chr1_3:51292685-51292704 | None:intergenic | 35.0% | |
| AATTCCGATCCTTTAACTGT+TGG | + | chr1_3:51292686-51292705 | Msa0123930:intron | 35.0% | |
| ATTCCGATCCTTTAACTGTT+GGG | + | chr1_3:51292687-51292706 | Msa0123930:intron | 35.0% | |
| TCTGTCCAAATATACATCAG+GGG | + | chr1_3:51292850-51292869 | Msa0123930:intron | 35.0% | |
| ! | ATTGCCACTTCTTGAACTTA+TGG | + | chr1_3:51293405-51293424 | Msa0123930:CDS | 35.0% |
| TGGGAAATTAGGATCACATA+TGG | - | chr1_3:51293443-51293462 | None:intergenic | 35.0% | |
| TATATGCTGTAGATTTGCAC+TGG | - | chr1_3:51293509-51293528 | None:intergenic | 35.0% | |
| TTCTGGGCAGTTTAAGTATA+GGG | - | chr1_3:51293694-51293713 | None:intergenic | 35.0% | |
| GATTCAGATCATTGAGTTCT+GGG | - | chr1_3:51293710-51293729 | None:intergenic | 35.0% | |
| AGATTCAGATCATTGAGTTC+TGG | - | chr1_3:51293711-51293730 | None:intergenic | 35.0% | |
| TCTTGTAGAAATCTGCATTC+AGG | + | chr1_3:51293735-51293754 | Msa0123930:CDS | 35.0% | |
| ! | CATGAACATTTTCCAAAGTG+GGG | - | chr1_3:51293881-51293900 | None:intergenic | 35.0% |
| ! | GCATGAACATTTTCCAAAGT+GGG | - | chr1_3:51293882-51293901 | None:intergenic | 35.0% |
| ! | TGCATGAACATTTTCCAAAG+TGG | - | chr1_3:51293883-51293902 | None:intergenic | 35.0% |
| TTGGAAAATGTTCATGCATC+AGG | + | chr1_3:51293885-51293904 | Msa0123930:CDS | 35.0% | |
| !! | TTGTCAGGATTTGTTAGTTG+AGG | + | chr1_3:51293908-51293927 | Msa0123930:CDS | 35.0% |
| ATATTTATTCCAGGGTTTCC+TGG | + | chr1_3:51294115-51294134 | Msa0123930:intron | 35.0% | |
| !!! | TTCGCTTTTTTTCAGGTTCA+GGG | - | chr1_3:51294594-51294613 | None:intergenic | 35.0% |
| GATGAGATACAGTTTCATCT+AGG | - | chr1_3:51294825-51294844 | None:intergenic | 35.0% | |
| CATGTATGAACTATGGTCTA+TGG | + | chr1_3:51294872-51294891 | Msa0123930:three_prime_UTR | 35.0% | |
| ! | TTTTGTATCGGAGCTTTCTG+CGG | - | chr1_3:51290268-51290287 | None:intergenic | 40.0% |
| AGTTACAATTGTGGACGTTG+TGG | + | chr1_3:51290306-51290325 | Msa0123930:CDS | 40.0% | |
| AGATGGAGATGGAGATTTGT+TGG | + | chr1_3:51290566-51290585 | Msa0123930:CDS | 40.0% | |
| !! | AGATGGAGATTTGTTGGATC+TGG | + | chr1_3:51290572-51290591 | Msa0123930:CDS | 40.0% |
| ! | TCTAGAACCAGATCTAGATG+TGG | + | chr1_3:51290602-51290621 | Msa0123930:CDS | 40.0% |
| TCAATCTCCACATCTAGATC+TGG | - | chr1_3:51290612-51290631 | None:intergenic | 40.0% | |
| AATCCAACATGAACCATCAC+CGG | - | chr1_3:51290783-51290802 | None:intergenic | 40.0% | |
| ! | AGAAATGTCCTGGGATTTTG+AGG | + | chr1_3:51290820-51290839 | Msa0123930:CDS | 40.0% |
| ! | TTTGAGGCTTTCGCTTAGAA+TGG | + | chr1_3:51290836-51290855 | Msa0123930:CDS | 40.0% |
| !!! | TGCTTTTTCATGCCCTAATC+TGG | + | chr1_3:51291272-51291291 | Msa0123930:CDS | 40.0% |
| ! | ATGCCCTAATCTGGAATCTA+TGG | + | chr1_3:51291281-51291300 | Msa0123930:CDS | 40.0% |
| GTAATACCCATTGATCCGAT+TGG | - | chr1_3:51291331-51291350 | None:intergenic | 40.0% | |
| ! | CCGTGTTAGGCATTGTTAAT+TGG | + | chr1_3:51291548-51291567 | Msa0123930:intron | 40.0% |
| AATGCCACGATGTAAATGGA+TGG | + | chr1_3:51291592-51291611 | Msa0123930:intron | 40.0% | |
| GATTCCATCCATTTACATCG+TGG | - | chr1_3:51291599-51291618 | None:intergenic | 40.0% | |
| !!! | GCAACTTTTGTTTTGTCCCA+TGG | + | chr1_3:51291673-51291692 | Msa0123930:intron | 40.0% |
| ! | TGATAATGCAGGGATGAACT+AGG | + | chr1_3:51291863-51291882 | Msa0123930:intron | 40.0% |
| AAACCTCAAAACCCTCAAGA+TGG | + | chr1_3:51291907-51291926 | Msa0123930:CDS | 40.0% | |
| AGAACAACCTTCCATCTTGA+GGG | - | chr1_3:51291921-51291940 | None:intergenic | 40.0% | |
| TAGAACAACCTTCCATCTTG+AGG | - | chr1_3:51291922-51291941 | None:intergenic | 40.0% | |
| GGAAGGTTGTTCTAATCTAG+GGG | + | chr1_3:51291928-51291947 | Msa0123930:CDS | 40.0% | |
| GAAGGTTGTTCTAATCTAGG+GGG | + | chr1_3:51291929-51291948 | Msa0123930:CDS | 40.0% | |
| GACCTCGTAACTATGATTGA+AGG | + | chr1_3:51292204-51292223 | Msa0123930:CDS | 40.0% | |
| AAAGCCGCATTGAAGCTATA+TGG | - | chr1_3:51292263-51292282 | None:intergenic | 40.0% | |
| TTTCAGACACCATATTTGGC+AGG | - | chr1_3:51292558-51292577 | None:intergenic | 40.0% | |
| TAGCCCAACAGTTAAAGGAT+CGG | - | chr1_3:51292693-51292712 | None:intergenic | 40.0% | |
| TCCTTTAACTGTTGGGCTAA+AGG | + | chr1_3:51292694-51292713 | Msa0123930:intron | 40.0% | |
| ACCTTTAGCCCAACAGTTAA+AGG | - | chr1_3:51292698-51292717 | None:intergenic | 40.0% | |
| TATTTACCATGGGGATCTCA+TGG | + | chr1_3:51292722-51292741 | Msa0123930:intron | 40.0% | |
| CTGTCCAAATATACATCAGG+GGG | + | chr1_3:51292851-51292870 | Msa0123930:intron | 40.0% | |
| CGAATGCTTTCTCTTGTTCT+TGG | + | chr1_3:51292877-51292896 | Msa0123930:CDS | 40.0% | |
| AATTGCAGCAACAGATGCAT+CGG | - | chr1_3:51292914-51292933 | None:intergenic | 40.0% | |
| CTCTAGATTTGGATAGCTTG+AGG | - | chr1_3:51292938-51292957 | None:intergenic | 40.0% | |
| AGGTCAAGCAACTCTAGATT+TGG | - | chr1_3:51292949-51292968 | None:intergenic | 40.0% | |
| AATCTGCTGTCACATGTTTC+AGG | + | chr1_3:51293358-51293377 | Msa0123930:intron | 40.0% | |
| CAGTCCATAAGTTCAAGAAG+TGG | - | chr1_3:51293412-51293431 | None:intergenic | 40.0% | |
| ! | CTTCTTGAACTTATGGACTG+TGG | + | chr1_3:51293412-51293431 | Msa0123930:CDS | 40.0% |
| ! | TTTGCCATCATTTTCGTCAG+TGG | - | chr1_3:51293473-51293492 | None:intergenic | 40.0% |
| ! | GTTCTGGGCAGTTTAAGTAT+AGG | - | chr1_3:51293695-51293714 | None:intergenic | 40.0% |
| CTGACTTTGTTACCTGACTT+TGG | - | chr1_3:51293938-51293957 | None:intergenic | 40.0% | |
| CAAAGTCAGGTAACAAAGTC+AGG | + | chr1_3:51293936-51293955 | Msa0123930:intron | 40.0% | |
| CAGGTTGTCCTTTCATGTTT+CGG | + | chr1_3:51293955-51293974 | Msa0123930:intron | 40.0% | |
| AAAATAGAACCAGGAAACCC+TGG | - | chr1_3:51294127-51294146 | None:intergenic | 40.0% | |
| CTATGGCAGGAAAAACATTG+CGG | - | chr1_3:51294179-51294198 | None:intergenic | 40.0% | |
| AGAAGGCGAATGGTTATCTA+TGG | - | chr1_3:51294196-51294215 | None:intergenic | 40.0% | |
| ! | CGGGTTCCTTATTTACTTAG+TGG | + | chr1_3:51294246-51294265 | Msa0123930:CDS | 40.0% |
| ! | TCCTTATTTACTTAGTGGCG+AGG | + | chr1_3:51294251-51294270 | Msa0123930:CDS | 40.0% |
| ACCTCGCCACTAAGTAAATA+AGG | - | chr1_3:51294255-51294274 | None:intergenic | 40.0% | |
| TGTGTCTTTACTGAGTGAAC+TGG | + | chr1_3:51294414-51294433 | Msa0123930:intron | 40.0% | |
| ! | ATCCAATTTTTCTTCTGCGG+AGG | - | chr1_3:51294452-51294471 | None:intergenic | 40.0% |
| !!! | TCGCTTTTTTTCAGGTTCAG+GGG | - | chr1_3:51294593-51294612 | None:intergenic | 40.0% |
| !!! | CTTCGCTTTTTTTCAGGTTC+AGG | - | chr1_3:51294595-51294614 | None:intergenic | 40.0% |
| CTGAACCTGAAAAAAAGCGA+AGG | + | chr1_3:51294593-51294612 | Msa0123930:CDS | 40.0% | |
| AACCTGAAAAAAAGCGAAGG+AGG | + | chr1_3:51294596-51294615 | Msa0123930:CDS | 40.0% | |
| !!! | ATCCTCCTTCGCTTTTTTTC+AGG | - | chr1_3:51294601-51294620 | None:intergenic | 40.0% |
| ! | TTTCTGTATGGTGATGAAGG+TGG | + | chr1_3:51294679-51294698 | Msa0123930:three_prime_UTR | 40.0% |
| TATCGTTTCTGTACCGTCTG+CGG | + | chr1_3:51290413-51290432 | Msa0123930:CDS | 45.0% | |
| AGGCTTGACGATAAAGCGTA+TGG | + | chr1_3:51290525-51290544 | Msa0123930:CDS | 45.0% | |
| !! | GATGTGGAGATTGATTCGAG+CGG | + | chr1_3:51290618-51290637 | Msa0123930:CDS | 45.0% |
| TTTGCCTGGGAATTTACGGT+GGG | + | chr1_3:51290641-51290660 | Msa0123930:CDS | 45.0% | |
| ! | ATTTACGGTGGGAGGTTTTG+AGG | + | chr1_3:51290652-51290671 | Msa0123930:CDS | 45.0% |
| GGCTTTCGCTTAGAATGGAA+AGG | + | chr1_3:51290841-51290860 | Msa0123930:CDS | 45.0% | |
| ATACCCATTGATCCGATTGG+TGG | - | chr1_3:51291328-51291347 | None:intergenic | 45.0% | |
| AACTTTGCCTTCATCAGCAG+AGG | + | chr1_3:51291649-51291668 | Msa0123930:intron | 45.0% | |
| ACTTTGCCTTCATCAGCAGA+GGG | + | chr1_3:51291650-51291669 | Msa0123930:intron | 45.0% | |
| ! | ACACAAAGGCTTTAGCAGCT+AGG | - | chr1_3:51291755-51291774 | None:intergenic | 45.0% |
| ! | TAAGCTCTAGCTGCACACAA+AGG | - | chr1_3:51291769-51291788 | None:intergenic | 45.0% |
| ! | CTTCCATCTTGAGGGTTTTG+AGG | - | chr1_3:51291913-51291932 | None:intergenic | 45.0% |
| CTCAAAACCCTCAAGATGGA+AGG | + | chr1_3:51291911-51291930 | Msa0123930:CDS | 45.0% | |
| TCTGCACTCTCTGTCTAAGA+TGG | + | chr1_3:51291997-51292016 | Msa0123930:CDS | 45.0% | |
| AGTGAAATCTCTCTCAGCTG+TGG | - | chr1_3:51292153-51292172 | None:intergenic | 45.0% | |
| CTCTTACTGCTGCTCAATTG+AGG | + | chr1_3:51292301-51292320 | Msa0123930:CDS | 45.0% | |
| TAGAGTTGCTTGACCTCAGT+GGG | + | chr1_3:51292953-51292972 | Msa0123930:CDS | 45.0% | |
| GTACAGATTCATACCCACTG+AGG | - | chr1_3:51292969-51292988 | None:intergenic | 45.0% | |
| ! | TCACGCTTCTTTTGTCTCCA+AGG | - | chr1_3:51293042-51293061 | None:intergenic | 45.0% |
| ! | TGGAGACAAAAGAAGCGTGA+TGG | + | chr1_3:51293042-51293061 | Msa0123930:intron | 45.0% |
| GGTTGCTGTCATAACAGATC+TGG | + | chr1_3:51293174-51293193 | Msa0123930:intron | 45.0% | |
| AGATCTGGCATAAGTGACAG+CGG | + | chr1_3:51293189-51293208 | Msa0123930:intron | 45.0% | |
| TCACATTAGGGCAAAGAGCA+AGG | - | chr1_3:51293263-51293282 | None:intergenic | 45.0% | |
| GTGGTTGGATCTGGGAAATT+AGG | - | chr1_3:51293454-51293473 | None:intergenic | 45.0% | |
| TTTCGTCAGTGGTTGGATCT+GGG | - | chr1_3:51293462-51293481 | None:intergenic | 45.0% | |
| ! | TTTTCGTCAGTGGTTGGATC+TGG | - | chr1_3:51293463-51293482 | None:intergenic | 45.0% |
| ! | CCATCATTTTCGTCAGTGGT+TGG | - | chr1_3:51293469-51293488 | None:intergenic | 45.0% |
| CCAACCACTGACGAAAATGA+TGG | + | chr1_3:51293466-51293485 | Msa0123930:CDS | 45.0% | |
| ! | TGTTCATGCATCAGGTTGTC+AGG | + | chr1_3:51293893-51293912 | Msa0123930:CDS | 45.0% |
| AGTTGAGGCTATCCAAAGTC+AGG | + | chr1_3:51293923-51293942 | Msa0123930:CDS | 45.0% | |
| GAACACTGCCGAAACATGAA+AGG | - | chr1_3:51293966-51293985 | None:intergenic | 45.0% | |
| GTAGACGTTTAGAAGGCGAA+TGG | - | chr1_3:51294206-51294225 | None:intergenic | 45.0% | |
| CCATCAGGTAGACGTTTAGA+AGG | - | chr1_3:51294213-51294232 | None:intergenic | 45.0% | |
| CCTTCTAAACGTCTACCTGA+TGG | + | chr1_3:51294210-51294229 | Msa0123930:CDS | 45.0% | |
| TCTACCTGATGGCTCCAAAA+GGG | + | chr1_3:51294221-51294240 | Msa0123930:CDS | 45.0% | |
| ! | ATAAGGAACCCGAACCCTTT+TGG | - | chr1_3:51294238-51294257 | None:intergenic | 45.0% |
| AGCCTCCGCAGAAGAAAAAT+TGG | + | chr1_3:51294447-51294466 | Msa0123930:intron | 45.0% | |
| ACTTCCGTGTAATGTGCTTG+TGG | + | chr1_3:51294627-51294646 | Msa0123930:CDS | 45.0% | |
| CAGTCCACAAGCACATTACA+CGG | - | chr1_3:51294634-51294653 | None:intergenic | 45.0% | |
| CGTTGTGGCCTTCCCAAAAA+AGG | + | chr1_3:51290321-51290340 | Msa0123930:CDS | 50.0% | |
| TAACGATGAATCTACCGGCG+TGG | - | chr1_3:51290391-51290410 | None:intergenic | 50.0% | |
| TTTGACGGTCTTGACGATCG+AGG | + | chr1_3:51290483-51290502 | Msa0123930:CDS | 50.0% | |
| ! | GCAGTGGACTTGATCTGTTG+AGG | + | chr1_3:51290505-51290524 | Msa0123930:CDS | 50.0% |
| GACGATAAAGCGTATGGCGA+TGG | + | chr1_3:51290531-51290550 | Msa0123930:CDS | 50.0% | |
| AAAGCGTATGGCGATGGTGA+TGG | + | chr1_3:51290537-51290556 | Msa0123930:CDS | 50.0% | |
| !! | TATGGCGATGGTGATGGAGA+TGG | + | chr1_3:51290543-51290562 | Msa0123930:CDS | 50.0% |
| !! | GATGGTGATGGAGATGGAGA+TGG | + | chr1_3:51290549-51290568 | Msa0123930:CDS | 50.0% |
| GATGGAGATGGAGATGGAGA+TGG | + | chr1_3:51290555-51290574 | Msa0123930:CDS | 50.0% | |
| !! | ATTGATTCGAGCGGTTTGCC+TGG | + | chr1_3:51290627-51290646 | Msa0123930:CDS | 50.0% |
| ! | TTGATTCGAGCGGTTTGCCT+GGG | + | chr1_3:51290628-51290647 | Msa0123930:CDS | 50.0% |
| GCGGTTTGCCTGGGAATTTA+CGG | + | chr1_3:51290637-51290656 | Msa0123930:CDS | 50.0% | |
| GTTTGCCTGGGAATTTACGG+TGG | + | chr1_3:51290640-51290659 | Msa0123930:CDS | 50.0% | |
| !!! | GGTTTTGAGGAGGTTACCTC+CGG | + | chr1_3:51290665-51290684 | Msa0123930:CDS | 50.0% |
| ! | GAAGGTGTGTAAGGGATGGA+GGG | + | chr1_3:51290707-51290726 | Msa0123930:CDS | 50.0% |
| GACGGAGGAGTTGAAGCTTA+GGG | + | chr1_3:51290755-51290774 | Msa0123930:CDS | 50.0% | |
| GGAGTTGAAGCTTAGGGTTC+CGG | + | chr1_3:51290761-51290780 | Msa0123930:CDS | 50.0% | |
| ! | GTTCCGGTGATGGTTCATGT+TGG | + | chr1_3:51290777-51290796 | Msa0123930:CDS | 50.0% |
| TCGATGCTGCAGAAATGTCC+TGG | + | chr1_3:51290810-51290829 | Msa0123930:CDS | 50.0% | |
| CGATGCTGCAGAAATGTCCT+GGG | + | chr1_3:51290811-51290830 | Msa0123930:CDS | 50.0% | |
| AGCGAAAGCCTCAAAATCCC+AGG | - | chr1_3:51290831-51290850 | None:intergenic | 50.0% | |
| TCTTTGACACCGCCACCAAT+CGG | + | chr1_3:51291313-51291332 | Msa0123930:CDS | 50.0% | |
| CTTTGCCTTCATCAGCAGAG+GGG | + | chr1_3:51291651-51291670 | Msa0123930:intron | 50.0% | |
| !!! | GGTCAGTGCTGGCATTTTCT+TGG | - | chr1_3:51292188-51292207 | None:intergenic | 50.0% |
| CATAGTTACGAGGTCAGTGC+TGG | - | chr1_3:51292199-51292218 | None:intergenic | 50.0% | |
| GCAGCCCCCTGATGTATATT+TGG | - | chr1_3:51292858-51292877 | None:intergenic | 50.0% | |
| CTAGAGTTGCTTGACCTCAG+TGG | + | chr1_3:51292952-51292971 | Msa0123930:CDS | 50.0% | |
| CTGCTGTCACATGTTTCAGG+TGG | + | chr1_3:51293361-51293380 | Msa0123930:intron | 50.0% | |
| GGCGAATGGTTATCTATGGC+AGG | - | chr1_3:51294192-51294211 | None:intergenic | 50.0% | |
| GTCTACCTGATGGCTCCAAA+AGG | + | chr1_3:51294220-51294239 | Msa0123930:CDS | 50.0% | |
| CTGATGGCTCCAAAAGGGTT+CGG | + | chr1_3:51294226-51294245 | Msa0123930:CDS | 50.0% | |
| TGATGGCTCCAAAAGGGTTC+GGG | + | chr1_3:51294227-51294246 | Msa0123930:CDS | 50.0% | |
| ! | GTGGTGGTTGTGGTGGAAAC+TGG | - | chr1_3:51290369-51290388 | None:intergenic | 55.0% |
| TTCTGTACCGTCTGCGGTCT+CGG | + | chr1_3:51290419-51290438 | Msa0123930:CDS | 55.0% | |
| GTCAACCACCGTCGAATCTC+AGG | + | chr1_3:51290448-51290467 | Msa0123930:CDS | 55.0% | |
| AGGCGAGCGCTTTCGTTTGA+CGG | + | chr1_3:51290468-51290487 | Msa0123930:CDS | 55.0% | |
| ACCTCCCACCGTAAATTCCC+AGG | - | chr1_3:51290648-51290667 | None:intergenic | 55.0% | |
| !!! | TACGGTGGGAGGTTTTGAGG+AGG | + | chr1_3:51290655-51290674 | Msa0123930:CDS | 55.0% |
| TTTGAGGAGGTTACCTCCGG+CGG | + | chr1_3:51290668-51290687 | Msa0123930:CDS | 55.0% | |
| ACCTCCGGCGGGATTGTTAT+CGG | + | chr1_3:51290680-51290699 | Msa0123930:CDS | 55.0% | |
| ! | CGAAGGTGTGTAAGGGATGG+AGG | + | chr1_3:51290706-51290725 | Msa0123930:CDS | 55.0% |
| GTGTAAGGGATGGAGGGAGA+CGG | + | chr1_3:51290713-51290732 | Msa0123930:CDS | 55.0% | |
| GAGGAAGCTGTGGAAAGCGA+CGG | + | chr1_3:51290737-51290756 | Msa0123930:CDS | 55.0% | |
| CGACGGAGGAGTTGAAGCTT+AGG | + | chr1_3:51290754-51290773 | Msa0123930:CDS | 55.0% | |
| GAAGCTTAGGGTTCCGGTGA+TGG | + | chr1_3:51290767-51290786 | Msa0123930:CDS | 55.0% | |
| ACCGCCACCAATCGGATCAA+TGG | + | chr1_3:51291321-51291340 | Msa0123930:CDS | 55.0% | |
| CCCATTGATCCGATTGGTGG+CGG | - | chr1_3:51291325-51291344 | None:intergenic | 55.0% | |
| CCGCCACCAATCGGATCAAT+GGG | + | chr1_3:51291322-51291341 | Msa0123930:CDS | 55.0% | |
| AGTTGCCCCTCTGCTGATGA+AGG | - | chr1_3:51291659-51291678 | None:intergenic | 55.0% | |
| TGCACACCATGAGATCCCCA+TGG | - | chr1_3:51292731-51292750 | None:intergenic | 55.0% | |
| GGCATAAGTGACAGCGGCAT+TGG | + | chr1_3:51293195-51293214 | Msa0123930:CDS | 55.0% | |
| CTCAGTTTGTGGGGTTGCAC+TGG | + | chr1_3:51293568-51293587 | Msa0123930:CDS | 55.0% | |
| !! | TTTGTGGGGTTGCACTGGCT+TGG | + | chr1_3:51293573-51293592 | Msa0123930:CDS | 55.0% |
| GTTGCTTCAGTGCCCCACTT+TGG | + | chr1_3:51293866-51293885 | Msa0123930:CDS | 55.0% | |
| !!! | CGAACCCTTTTGGAGCCATC+AGG | - | chr1_3:51294228-51294247 | None:intergenic | 55.0% |
| TGAATCTACCGGCGTGGTGG+TGG | - | chr1_3:51290385-51290404 | None:intergenic | 60.0% | |
| CGATGAATCTACCGGCGTGG+TGG | - | chr1_3:51290388-51290407 | None:intergenic | 60.0% | |
| CGAATCACCGAGACCGCAGA+CGG | - | chr1_3:51290429-51290448 | None:intergenic | 60.0% | |
| AGCGCTCGCCTGAGATTCGA+CGG | - | chr1_3:51290459-51290478 | None:intergenic | 60.0% | |
| GGTCTTGACGATCGAGGCAG+TGG | + | chr1_3:51290489-51290508 | Msa0123930:CDS | 60.0% | |
| GCCTGGGAATTTACGGTGGG+AGG | + | chr1_3:51290644-51290663 | Msa0123930:CDS | 60.0% | |
| TTGAGGAGGTTACCTCCGGC+GGG | + | chr1_3:51290669-51290688 | Msa0123930:CDS | 60.0% | |
| TCCGGCGGGATTGTTATCGG+CGG | + | chr1_3:51290683-51290702 | Msa0123930:CDS | 60.0% | |
| GGGATTGTTATCGGCGGCGA+AGG | + | chr1_3:51290689-51290708 | Msa0123930:CDS | 60.0% | |
| ! | ATCGGCGGCGAAGGTGTGTA+AGG | + | chr1_3:51290698-51290717 | Msa0123930:CDS | 60.0% |
| ! | TCGGCGGCGAAGGTGTGTAA+GGG | + | chr1_3:51290699-51290718 | Msa0123930:CDS | 60.0% |
| ! | CGGCGAAGGTGTGTAAGGGA+TGG | + | chr1_3:51290703-51290722 | Msa0123930:CDS | 60.0% |
| GAAGCTGTGGAAAGCGACGG+AGG | + | chr1_3:51290740-51290759 | Msa0123930:CDS | 60.0% | |
| GCGTGAAGATTGCGACGCGG+CGG | - | chr1_3:51290235-51290254 | None:intergenic | 65.0% | |
| GCCGCGTCGCAATCTTCACG+CGG | + | chr1_3:51290234-51290253 | Msa0123930:CDS | 65.0% | |
| GCCGCGTGAAGATTGCGACG+CGG | - | chr1_3:51290238-51290257 | None:intergenic | 65.0% | |
| GCGTCGCAATCTTCACGCGG+CGG | + | chr1_3:51290237-51290256 | Msa0123930:CDS | 65.0% | |
| CACCACAACCACCACCACGC+CGG | + | chr1_3:51290374-51290393 | Msa0123930:CDS | 65.0% | |
| !! | TACCGGCGTGGTGGTGGTTG+TGG | - | chr1_3:51290379-51290398 | None:intergenic | 65.0% |
| GCTCGCCTGAGATTCGACGG+TGG | - | chr1_3:51290456-51290475 | None:intergenic | 65.0% | |
| GCCGATAACAATCCCGCCGG+AGG | - | chr1_3:51290684-51290703 | None:intergenic | 65.0% | |
| GCCGCCGATAACAATCCCGC+CGG | - | chr1_3:51290687-51290706 | None:intergenic | 65.0% | |
| !! | CGGCGTGGTGGTGGTTGTGG+TGG | - | chr1_3:51290376-51290395 | None:intergenic | 70.0% |
| AGGGATGGAGGGAGACGGCG+AGG | + | chr1_3:51290718-51290737 | Msa0123930:CDS | 70.0% | |
| GGGAGACGGCGAGGAAGCTG+TGG | + | chr1_3:51290727-51290746 | Msa0123930:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 51290213 | 51294936 | 51290213 | ID=Msa0123930;Name=Msa0123930 |
| chr1_3 | mRNA | 51290213 | 51294936 | 51290213 | ID=Msa0123930-mRNA-1;Parent=Msa0123930;Name=Msa0123930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.9|0.81|1|1|1|11|282|625 |
| chr1_3 | exon | 51290213 | 51290862 | 51290213 | ID=Msa0123930-mRNA-1:exon:15673;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51291242 | 51291343 | 51291242 | ID=Msa0123930-mRNA-1:exon:15674;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51291874 | 51292018 | 51291874 | ID=Msa0123930-mRNA-1:exon:15675;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51292138 | 51292322 | 51292138 | ID=Msa0123930-mRNA-1:exon:15676;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51292870 | 51293031 | 51292870 | ID=Msa0123930-mRNA-1:exon:15677;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51293191 | 51293288 | 51293191 | ID=Msa0123930-mRNA-1:exon:15678;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51293380 | 51293597 | 51293380 | ID=Msa0123930-mRNA-1:exon:15679;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51293690 | 51293756 | 51293690 | ID=Msa0123930-mRNA-1:exon:15680;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51293859 | 51293944 | 51293859 | ID=Msa0123930-mRNA-1:exon:15681;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51294174 | 51294272 | 51294174 | ID=Msa0123930-mRNA-1:exon:15682;Parent=Msa0123930-mRNA-1 |
| chr1_3 | exon | 51294589 | 51294936 | 51294589 | ID=Msa0123930-mRNA-1:exon:15683;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51290213 | 51290862 | 51290213 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51291242 | 51291343 | 51291242 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51291874 | 51292018 | 51291874 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51292138 | 51292322 | 51292138 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51292870 | 51293031 | 51292870 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51293191 | 51293288 | 51293191 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51293380 | 51293597 | 51293380 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51293690 | 51293756 | 51293690 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51293859 | 51293944 | 51293859 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51294174 | 51294272 | 51294174 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | CDS | 51294589 | 51294654 | 51294589 | ID=Msa0123930-mRNA-1:cds;Parent=Msa0123930-mRNA-1 |
| chr1_3 | three_prime_UTR | 51294655 | 51294936 | 51294655 | ID=Msa0123930-mRNA-1:three_prime_utr;Parent=Msa0123930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
