AlfalfaGEDB | Msa0033640

M. sativa cultivar zhongmu-4 / Msa0033640

KEGG: -
GO: GO:0000003 GO:0000151 GO:0000278 GO:0000280 GO:0001673 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0016043 GO:0019005 GO:0019538 GO:0019941 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030163 GO:0031146 GO:0031461 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0043073 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051603 GO:0051704 GO:0055047 GO:0061458 GO:0071704 GO:0071840 GO:0140014 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903047 GO:1990234
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033640	XP_013468582.1	95.223	628	9	2	1	626	1	609	0.0	1196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033640	sp\|Q8W104\|FBL17_ARATH	57.050	617	194	10	28	624	27	592	0.0	631

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033640	A0A072VKR1	95.223	628	9	2	1	626	1	609	0.0	1196

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033610	Msa0033640	0.985133	1.257693e-162	-8.615850e-47
Msa0033640	Msa0037660	0.800026	1.748113e-48	-8.615850e-47
Msa0033640	Msa0041910	0.801138	1.037231e-48	-8.615850e-47
Msa0033640	Msa0050530	0.822429	2.380246e-53	-8.615850e-47
Msa0033640	Msa0100600	0.834170	3.499743e-56	-8.615850e-47
Msa0033640	Msa0100890	0.823188	1.584547e-53	-8.615850e-47
Msa0033640	Msa0123930	0.937080	6.184878e-98	-8.615850e-47
Msa0033640	Msa0136330	0.803312	3.701562e-49	-8.615850e-47
Msa0033640	Msa0179040	0.800013	1.758567e-48	-8.615850e-47
Msa0033640	Msa0433630	0.804032	2.624382e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033640	MtrunA17_Chr1g0184781	95.223	628	9	2	1	626	1	609	0.0	1196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0033640	AT3G54650.1	57.050	617	194	10	28	624	27	592	0.0	631

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Find 163 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGAATAAGTTTCAA+GGG	0.539109	1_1:-61243966	None:intergenic
AAACCTCAAAACCCTCAAGA+TGG	0.552260	1_1:+61241217	Msa0033640:CDS
AAACGTGGTAGTTACAATTG+TGG	0.606563	1_1:+61239604	Msa0033640:CDS
AAAGCCGCATTGAAGCTATA+TGG	0.425901	1_1:-61241570	None:intergenic
AAAGCGTATGGCGATGGTGA+TGG	0.465639	1_1:+61239847	Msa0033640:CDS
AATACTTTATTTCATTAAAA+AGG	0.210296	1_1:-61244213	None:intergenic
AATCCAACATGAACCTTCAC+CGG	0.547681	1_1:-61240090	None:intergenic
AATTGCAGCAACAGATGCAT+CGG	0.609470	1_1:-61242221	None:intergenic
ACAAACTGAGTTTCTTTAAA+CGG	0.387577	1_1:-61242865	None:intergenic
ACATCCATATAGCTTCAATG+CGG	0.786151	1_1:+61241566	Msa0033640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAAAAAGGAAAGAAACG+TGG	+	chr1_1:61239589-61239608	Msa0033640:CDS	30.0%
ATAGATAACGATGAATCTAC+CGG	-	chr1_1:61239706-61239725	None:intergenic	30.0%
AGATCGATGCACAAAAAAAT+AGG	+	chr1_1:61240316-61240335	Msa0033640:intron	30.0%
TAACACGGATCTAAAAATCT+AGG	-	chr1_1:61240846-61240865	None:intergenic	30.0%
CTGAAACTTAAATCTTCCAT+GGG	-	chr1_1:61241002-61241021	None:intergenic	30.0%
GAAATAAAACAGAAATCTGG+AGG	-	chr1_1:61241034-61241053	None:intergenic	30.0%
TCAATATGAATGCAATCTCA+GGG	-	chr1_1:61241394-61241413	None:intergenic	30.0%
TTCAATATGAATGCAATCTC+AGG	-	chr1_1:61241395-61241414	None:intergenic	30.0%
GTAACTATGATTGAAGGATT+GGG	+	chr1_1:61241520-61241539	Msa0033640:CDS	30.0%
CATTGTAAAAGACCAAACAT+AGG	+	chr1_1:61241821-61241840	Msa0033640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	61239520	61244244	61239520	ID=Msa0033640;Name=Msa0033640
chr1_1	mRNA	61239520	61244244	61239520	ID=Msa0033640-mRNA-1;Parent=Msa0033640;Name=Msa0033640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.9\|0.81\|1\|1\|1\|11\|282\|626
chr1_1	exon	61239520	61240172	61239520	ID=Msa0033640-mRNA-1:exon:19203;Parent=Msa0033640-mRNA-1
chr1_1	exon	61240552	61240653	61240552	ID=Msa0033640-mRNA-1:exon:19204;Parent=Msa0033640-mRNA-1
chr1_1	exon	61241184	61241328	61241184	ID=Msa0033640-mRNA-1:exon:19205;Parent=Msa0033640-mRNA-1
chr1_1	exon	61241448	61241632	61241448	ID=Msa0033640-mRNA-1:exon:19206;Parent=Msa0033640-mRNA-1
chr1_1	exon	61242180	61242341	61242180	ID=Msa0033640-mRNA-1:exon:19207;Parent=Msa0033640-mRNA-1
chr1_1	exon	61242501	61242598	61242501	ID=Msa0033640-mRNA-1:exon:19208;Parent=Msa0033640-mRNA-1
chr1_1	exon	61242690	61242907	61242690	ID=Msa0033640-mRNA-1:exon:19209;Parent=Msa0033640-mRNA-1
chr1_1	exon	61243000	61243066	61243000	ID=Msa0033640-mRNA-1:exon:19210;Parent=Msa0033640-mRNA-1
chr1_1	exon	61243169	61243254	61243169	ID=Msa0033640-mRNA-1:exon:19211;Parent=Msa0033640-mRNA-1
chr1_1	exon	61243482	61243580	61243482	ID=Msa0033640-mRNA-1:exon:19212;Parent=Msa0033640-mRNA-1
chr1_1	exon	61243897	61244244	61243897	ID=Msa0033640-mRNA-1:exon:19213;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61239520	61240172	61239520	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61240552	61240653	61240552	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61241184	61241328	61241184	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61241448	61241632	61241448	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61242180	61242341	61242180	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61242501	61242598	61242501	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61242690	61242907	61242690	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61243000	61243066	61243000	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61243169	61243254	61243169	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61243482	61243580	61243482	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	CDS	61243897	61243962	61243897	ID=Msa0033640-mRNA-1:cds;Parent=Msa0033640-mRNA-1
chr1_1	three_prime_UTR	61243963	61244244	61243963	ID=Msa0033640-mRNA-1:three_prime_utr;Parent=Msa0033640-mRNA-1

Gene Sequence

>Msa0033640

ATGCAACACTCAATTAACGCCGCCGCGTCGCAATCTTCACGCGGCGGCGACACCGCAGAAAGCTCCGATACAAAAAAAGGAAAGAAACGTGGTAGTTACAATTGTGGACGTTGTGGCCTTCCCAAAAAAGGACATAACTGTAATATCAAAACACCAGTTTCAACCACAACAACCACCACTACGCCGGTAGATTCATCGTTATCTATCGTTTCTGTACCGTCTGCGGTCTCGGTGATTCGTCAACCACCGTCGAATCTCAGGCGAGCGCTTTCGTTTGACGGTCTTGACGATCGAGGCAGTGGACTTGATCTGTTGAGGCTTGACGATAAAGCGTATGGCGATGGTGATGGAGATGGAGATGGAGATGGAGATTTGTTGGATCTGGAACTAGATCTAGAACCAGATCTAGATGTGGAGATTGATTCGAGCGGTTTGCCTGGGAATTTACGGTGGGAGGTTTTGAGGAGGTTACCTCCGGCGGGATTGTTATCGGCGGCGAAGGTGTGTAAGGGATGGAGGGAGACGGCGAGGAAGCTGTGGAAAGCGACGGAGGAGTTGAAGCTTAGGGTTCCGGTGAAGGTTCATGTTGGATTTGTTGCGTCGATGCTGCAGAAATGTCCTGGGATTTTGAGGCTTTCGCTTAGAATGGAAAGTGATTTTGATTCAACGATGCTGGCTTGCATTGCTTTTTCATGCCCTAATCTGGAATCTATGGAGATCTCAGTCTTTGACACCGCCACCAATCGGATCAATGGGGATGAACTAGGCCGATTTGTTGCTGACAAAAGAAACCTCAAAACCCTCAAGATGGAAGGTTGTTCTAATCTAGGGGGTTTTGTCCTCACTTCATCTAGTTTGTGTACACTTTGGCTATCAGATCTGCACTCTCTGTCTAAGATGGTATTTAACTGTCCACAGCTGAGAGAGATTTCACTTGAATTTTCTTGCCAAGAAAATGCCAGCACTGACCTCGTAACTATGATTGAAGGATTGGGAAGAAGTTGCTTGAAATTACAAAACATCCATATAGCTTCAATGCGGCTTTCTCATGCTTCTGTGCTTGCTCTTACTGCTGCTCAATTGAGGGGGCTGCGAATGCTTTCTCTTGTTCTTGGATCTGAATTAACCGATGCATCTGTTGCTGCAATTGCCTCAAGCTATCCAAATCTAGAGTTGCTTGACCTCAGTGGGTATGAATCTGTACCGATTCTTATTGAATTTGAAGTTTTTGTTGAAGTTTTGAAAATATCTGGCATAAGTGACAGCGGCATTGGAATGATTTGCAACGTATTCCCTGAAACACTTAAAAGACTTCTCCTTGCTCTTTGCCCTAATGTGACTTCAAGTGGCATTCAATTTGCTACAGCTCAATTGCCACTTCTTGAACTTATGGACTGTGGCATGACCATATGTGATCCTAATTTCCCAGATCCAACCACTGACGAAAATGATGGCAAATCACAGAAAATCTCCAGTGCAAATCTACAGCATATAAACCAAAAGCTAATCATCAAACATAGCCGTTTAAAGAAACTCAGTTTGTGGGGTTGCACTGGCTTGGATGCCCTATACTTAAACTGCCCAGAACTCAATGATCTGAATCTAAATTCTTGTAGAAATCTGCATTCAGAGAGGCTGTTGCTTCAGTGCCCCACTTTGGAAAATGTTCATGCATCAGGTTGTCAGGATTTGTTAGTTGAGGCTATCCAAAGTCAGGTCCGCAATGTTTTTCCTGCCATAGATAACCATTCGCCTTCTAAACGTCTACCTGATGGCTCCAAAAGGGTTCGGGTTCCTTATTTACTTAGTGGCGAGTCCCCTGAACCTGAAAAAAAGCGAAGGAGGATCGAGAGACTTCCGTGTAATGTGCTTGTGGACTGA

Protein sequence

>Msa0033640

MQHSINAAASQSSRGGDTAESSDTKKGKKRGSYNCGRCGLPKKGHNCNIKTPVSTTTTTTTPVDSSLSIVSVPSAVSVIRQPPSNLRRALSFDGLDDRGSGLDLLRLDDKAYGDGDGDGDGDGDLLDLELDLEPDLDVEIDSSGLPGNLRWEVLRRLPPAGLLSAAKVCKGWRETARKLWKATEELKLRVPVKVHVGFVASMLQKCPGILRLSLRMESDFDSTMLACIAFSCPNLESMEISVFDTATNRINGDELGRFVADKRNLKTLKMEGCSNLGGFVLTSSSLCTLWLSDLHSLSKMVFNCPQLREISLEFSCQENASTDLVTMIEGLGRSCLKLQNIHIASMRLSHASVLALTAAQLRGLRMLSLVLGSELTDASVAAIASSYPNLELLDLSGYESVPILIEFEVFVEVLKISGISDSGIGMICNVFPETLKRLLLALCPNVTSSGIQFATAQLPLLELMDCGMTICDPNFPDPTTDENDGKSQKISSANLQHINQKLIIKHSRLKKLSLWGCTGLDALYLNCPELNDLNLNSCRNLHSERLLLQCPTLENVHASGCQDLLVEAIQSQVRNVFPAIDNHSPSKRLPDGSKRVRVPYLLSGESPEPEKKRRRIERLPCNVLVD*