AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124020 MtrunA17_Chr1g0184931 96.011 727 20 4 1 723 1 722 0.0 1422
Msa0124020 MtrunA17_Chr7g0260511 49.662 739 255 30 13 723 4 653 2.56e-179 526
Msa0124020 MtrunA17_Chr7g0219501 29.104 268 136 13 493 714 667 926 1.01e-13 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124020 AT3G63430.1 35.905 713 270 26 22 723 4 540 1.28e-107 338
Msa0124020 AT3G63430.2 37.002 627 221 22 104 723 49 508 2.14e-101 321
Msa0124020 AT5G15580.1 28.223 287 113 12 502 707 639 913 1.89e-14 77.8

Find 211 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATAATGTTAATTCTTA+TGG 0.170803 1_3:+51453450 Msa0124020:CDS
TTAATGACCATGACAAAATT+AGG 0.176366 1_3:+51455661 Msa0124020:three_prime_UTR
TAACCGTTGGACTTCAATTT+TGG 0.196054 1_3:-51453342 None:intergenic
TTAGAGGCTCTGCAGCTTAA+AGG 0.226674 1_3:+51453693 Msa0124020:CDS
AGGAAGAGGGAAGCAGAATA+AGG 0.226928 1_3:+51453515 Msa0124020:CDS
CAGTGTTATTGTTAGATTAA+TGG 0.236552 1_3:+51453233 Msa0124020:CDS
TCTTATGGTAACATTGATAA+TGG 0.256110 1_3:+51453465 Msa0124020:CDS
TCAATGCATCGTTTGGTAAT+TGG 0.266872 1_3:-51454577 None:intergenic
TGAGATCTTCTTCTCCTTCT+CGG 0.271871 1_3:+51453769 Msa0124020:CDS
CTCCTCCGCGTCTCGACGTT+CGG 0.271923 1_3:-51453942 None:intergenic
TAACTTTATGTCAATATAAA+AGG 0.278881 1_3:+51455701 Msa0124020:three_prime_UTR
TGTGATGTAGAAGTATAAAT+TGG 0.285153 1_3:+51454405 Msa0124020:intron
AGTGTTATTGTTAGATTAAT+GGG 0.292224 1_3:+51453234 Msa0124020:CDS
CTCGTATTCAAGGATTTAAT+TGG 0.294796 1_3:+51455402 Msa0124020:CDS
TTTCTTCTTGAACTTATCTT+TGG 0.296526 1_3:-51454014 None:intergenic
GTAACATTGATAATGGATTA+TGG 0.301713 1_3:+51453472 Msa0124020:CDS
ATCCGAGGAGGAGGCAAAAT+TGG 0.302398 1_3:+51454984 Msa0124020:CDS
TGGATGATCATTGTTAAATT+TGG 0.312786 1_3:+51455730 Msa0124020:three_prime_UTR
CCTTCCTGTTCTGGAACTTA+AGG 0.317482 1_3:+51453050 Msa0124020:CDS
AAGCACAATGATTCGATCTA+TGG 0.334299 1_3:+51453597 Msa0124020:CDS
GAATCATTGTGCTTTGGTTC+AGG 0.335322 1_3:-51453588 None:intergenic
ATCAGATTTGGTCAGAGTTT+CGG 0.339373 1_3:+51455235 Msa0124020:CDS
GACTCATTACCATCGGATTC+CGG 0.344614 1_3:+51453261 Msa0124020:CDS
TGCGTTTGCCAGAAAGAAAA+TGG 0.347612 1_3:-51452811 None:intergenic
ACCGTGGAAGGCGGTGTCTA+AGG 0.350723 1_3:+51455200 Msa0124020:CDS
AGATGAGTGGTTGGGGTGAA+TGG 0.352171 1_3:+51455340 Msa0124020:CDS
CTCTGTGTCGGTAAGTGAAT+TGG 0.356274 1_3:-51454162 None:intergenic
CACACTCAAGCATATCTTAG+AGG 0.366231 1_3:+51453677 Msa0124020:CDS
CTTATCTTTGGCGAATTAAC+CGG 0.366934 1_3:-51454002 None:intergenic
TCTGAATCAGAGGATTTGTT+TGG 0.368561 1_3:+51455279 Msa0124020:CDS
GCATTTGTTCGGATCTCTCT+AGG 0.372895 1_3:-51453165 None:intergenic
AAGATCTCAGTGGTTTCATT+AGG 0.374295 1_3:-51453755 None:intergenic
CATTAGCAGTTGCATTTGTT+CGG 0.378994 1_3:-51453176 None:intergenic
AGGAAAATGTCACAATCTTC+AGG 0.380114 1_3:-51455060 None:intergenic
TTCTCTGATTTCTCCGGTGA+CGG 0.381441 1_3:-51452958 None:intergenic
AGAGGTATGGAAGGAGGAAG+AGG 0.383018 1_3:+51453501 Msa0124020:CDS
TGAGCTCGATCATCAAATCT+TGG 0.387356 1_3:-51453879 None:intergenic
AAAACAAGTCCTTCCTGTTC+TGG 0.392571 1_3:+51453041 Msa0124020:CDS
CATTGTTAAATTTGGTGGTT+GGG 0.397866 1_3:+51455738 Msa0124020:three_prime_UTR
CTCCTCCGCATTCTTCTGTT+CGG 0.411229 1_3:+51453826 Msa0124020:CDS
GGGTGAATGGACGGTGGAGA+TGG 0.415119 1_3:+51455353 Msa0124020:CDS
ATTGTAATCAATGCATCGTT+TGG 0.416134 1_3:-51454584 None:intergenic
TCATTAGGACAATGGGAGAT+TGG 0.416704 1_3:-51453740 None:intergenic
TCCTCCGCGTCTCGACGTTC+GGG 0.417197 1_3:-51453941 None:intergenic
TTCAAAACACAAGCTTTCTT+CGG 0.418538 1_3:-51455482 None:intergenic
GACATGGGATGTATCGTGTA+TGG 0.419545 1_3:-51452529 None:intergenic
GAGAGGAGACACATCAGATT+TGG 0.420115 1_3:+51455223 Msa0124020:CDS
AAACAGATGGGGTGCATGGC+TGG 0.422548 1_3:+51452764 Msa0124020:CDS
TTTAGGAATAGTAGTTGTAA+TGG 0.423730 1_3:+51452587 Msa0124020:five_prime_UTR
TTCGAGCGGTTTAATAGAAC+CGG 0.430201 1_3:+51453792 Msa0124020:CDS
TCTAGGGTGAAGCCCTCCTT+TGG 0.433294 1_3:-51453148 None:intergenic
ATTGTTGCTTCTCAAGTAGA+AGG 0.435159 1_3:-51455080 None:intergenic
CGACGTTCGGGACATTCCTC+CGG 0.436841 1_3:-51453929 None:intergenic
CGTTGCAGGAAATTCTTAAC+CGG 0.442389 1_3:+51455163 Msa0124020:CDS
GGCAGAGGAGATGAGTGGTT+GGG 0.443076 1_3:+51455332 Msa0124020:CDS
TTTATATTGACATAAAGTTA+TGG 0.445590 1_3:-51455698 None:intergenic
GGAGATGGGAGATGTCGTTT+TGG 0.449346 1_3:+51455368 Msa0124020:CDS
AGGAAGGTACAAGGTCTTCA+TGG 0.452464 1_3:+51453070 Msa0124020:CDS
TAGATCGAATCATTGTGCTT+TGG 0.455948 1_3:-51453594 None:intergenic
GAGAAAAGTGATTGATCCTA+AGG 0.458864 1_3:+51454076 Msa0124020:CDS
TCATCTTTCTCTGATTTCTC+CGG 0.460722 1_3:-51452964 None:intergenic
GTTCCGACGAGCACGGGGAC+TGG 0.462023 1_3:-51453850 None:intergenic
AGTGGTTTCATTAGGACAAT+GGG 0.462877 1_3:-51453747 None:intergenic
GTCAATATAAAAGGAAGTGT+TGG 0.463959 1_3:+51455710 Msa0124020:three_prime_UTR
CCTTCCTTAAGTTCCAGAAC+AGG 0.464066 1_3:-51453054 None:intergenic
GGAAGAGGGAAGCAGAATAA+GGG 0.466407 1_3:+51453516 Msa0124020:CDS
GAGCTCGATCATCAAATCTT+GGG 0.471607 1_3:-51453878 None:intergenic
GACGTTCGGGACATTCCTCC+GGG 0.473521 1_3:-51453928 None:intergenic
AATTGGAGGAGTACAAAGAA+GGG 0.474862 1_3:+51454422 Msa0124020:CDS
GAGGTATGGAAGGAGGAAGA+GGG 0.477557 1_3:+51453502 Msa0124020:CDS
GACGAGTCAAGAACCGATAC+CGG 0.481313 1_3:-51454523 None:intergenic
GGTGAATGGACGGTGGAGAT+GGG 0.481425 1_3:+51455354 Msa0124020:CDS
TGGTGTGTTGAAGAAGGATA+TGG 0.481990 1_3:+51455311 Msa0124020:CDS
CCGTGGAAGGCGGTGTCTAA+GGG 0.482299 1_3:+51455201 Msa0124020:CDS
GCTCAAGTTCCGACGAGCAC+GGG 0.487157 1_3:-51453856 None:intergenic
ATGATCATTGTTAAATTTGG+TGG 0.487532 1_3:+51455733 Msa0124020:three_prime_UTR
CCCTTAGACACCGCCTTCCA+CGG 0.493681 1_3:-51455201 None:intergenic
AAGTCGATCTCTCGAGACTC+TGG 0.494700 1_3:-51453313 None:intergenic
ATTATGGAATGGTAGAGGTA+TGG 0.496429 1_3:+51453488 Msa0124020:CDS
ACATGGGATGTATCGTGTAT+GGG 0.501297 1_3:-51452528 None:intergenic
AGGAATAGTAGTTGTAATGG+AGG 0.501411 1_3:+51452590 Msa0124020:five_prime_UTR
GATATGTGGAGTGCAGGAGA+AGG 0.501417 1_3:+51454958 Msa0124020:CDS
TAGCGACAGGAGGATCTCCC+AGG 0.503301 1_3:+51454051 Msa0124020:CDS
CGAACAGAAGAATGCGGAGG+AGG 0.504857 1_3:-51453825 None:intergenic
AGAGAAAGATGATGGCAAAC+CGG 0.507452 1_3:+51452975 Msa0124020:CDS
CAACGGAGCAATGTCGGCTC+GGG 0.507902 1_3:+51453369 Msa0124020:CDS
AGAAGGAAAATCCGAGGAGG+AGG 0.508110 1_3:+51454975 Msa0124020:CDS
TGCCAGAAAGAAAATGGTTA+CGG 0.509581 1_3:-51452805 None:intergenic
CATCGAACGACTCGTATTCA+AGG 0.510869 1_3:+51455392 Msa0124020:CDS
GAAGATGATATGTGGAGTGC+AGG 0.512219 1_3:+51454952 Msa0124020:CDS
TGAGAAGCAACAATTTCGTA+AGG 0.515455 1_3:+51455089 Msa0124020:CDS
TCGGAGGATAAGAGAGAGGG+AGG 0.516634 1_3:+51455254 Msa0124020:CDS
GCCTCTAGTTTGTTACATTG+AGG 0.516765 1_3:-51455456 None:intergenic
TCAACGGAGCAATGTCGGCT+CGG 0.516964 1_3:+51453368 Msa0124020:CDS
CATTTGTTCGGATCTCTCTA+GGG 0.518783 1_3:-51453164 None:intergenic
GAGTGGTTGGGGTGAATGGA+CGG 0.519523 1_3:+51455344 Msa0124020:CDS
AATAGTAGTTGTAATGGAGG+AGG 0.520542 1_3:+51452593 Msa0124020:five_prime_UTR
GGTCCAGTCCCCGTGCTCGT+CGG 0.520738 1_3:+51453847 Msa0124020:CDS
AATTCTCAAGAGAGGCTCCT+AGG 0.521742 1_3:+51453094 Msa0124020:CDS
GATCCTAAGGTGAAAATGTT+GGG 0.522669 1_3:+51454089 Msa0124020:CDS
AAATTGGAGGAGTACAAAGA+AGG 0.523276 1_3:+51454421 Msa0124020:CDS
CTTCTCCTTCTCGGTTCGAG+CGG 0.526908 1_3:+51453778 Msa0124020:CDS
GATTTGTTTGGAGTGATATG+TGG 0.528271 1_3:+51455291 Msa0124020:CDS
CAGTGGTTTCATTAGGACAA+TGG 0.528722 1_3:-51453748 None:intergenic
CGGAGGAGGAGAATCATAAC+CGG 0.529851 1_3:-51453811 None:intergenic
GGCTCAAGTTCCGACGAGCA+CGG 0.531966 1_3:-51453857 None:intergenic
ACGGTGGTAACCTTTGATTC+CGG 0.533627 1_3:-51455182 None:intergenic
GCGGAGGAGGGTTAGTAATG+AGG 0.535416 1_3:+51453956 Msa0124020:CDS
TTGATCTCTTTAACCGGTGA+CGG 0.536844 1_3:-51453009 None:intergenic
TGGCAGAGGAGATGAGTGGT+TGG 0.536868 1_3:+51455331 Msa0124020:CDS
GAGAAATCAGAGAAAGATGA+TGG 0.540245 1_3:+51452967 Msa0124020:CDS
AGAAAAGGTTGAAGATGCGT+GGG 0.541387 1_3:+51453628 Msa0124020:CDS
AAAACATATTCACAAACAGA+TGG 0.541883 1_3:+51452751 Msa0124020:CDS
AAACATATTCACAAACAGAT+GGG 0.541977 1_3:+51452752 Msa0124020:CDS
GTTACAACCTAGTCCGGTAT+CGG 0.542307 1_3:+51454510 Msa0124020:CDS
AGAAGCAACAATTTCGTAAG+GGG 0.542314 1_3:+51455091 Msa0124020:CDS
GGCGTTGTCATCACCGTCAC+CGG 0.544136 1_3:+51452996 Msa0124020:CDS
TCAAGAACCGATACCGGACT+AGG 0.547333 1_3:-51454517 None:intergenic
TCATTGTTAAATTTGGTGGT+TGG 0.547370 1_3:+51455737 Msa0124020:three_prime_UTR
GCAACTGCTCAGATAGCGAC+AGG 0.550497 1_3:+51454038 Msa0124020:CDS
CGGAGGAGGGTTAGTAATGA+GGG 0.551563 1_3:+51453957 Msa0124020:CDS
GCAGAGGAGATGAGTGGTTG+GGG 0.553665 1_3:+51455333 Msa0124020:CDS
TACACTCAACGGAGCAATGT+CGG 0.553892 1_3:+51453363 Msa0124020:CDS
GAGAAAAGGTTGAAGATGCG+TGG 0.554159 1_3:+51453627 Msa0124020:CDS
TGATTCTAGAAGAGTGTCTC+CGG 0.554213 1_3:+51453983 Msa0124020:CDS
TGTCGAGATCTTGAGAAGGT+TGG 0.554441 1_3:-51453656 None:intergenic
CGAACGTCGAGACGCGGAGG+AGG 0.554736 1_3:+51453943 Msa0124020:CDS
TCACAAACAGATGGGGTGCA+TGG 0.555175 1_3:+51452760 Msa0124020:CDS
AAACGAGTTACAACCTAGTC+CGG 0.557491 1_3:+51454504 Msa0124020:CDS
GATATGTGGTGTGTTGAAGA+AGG 0.557747 1_3:+51455305 Msa0124020:CDS
CGGAATCAGAAGATGATATG+TGG 0.558896 1_3:+51454944 Msa0124020:CDS
CAACACTAAAAGATTACCTC+CGG 0.560984 1_3:+51452841 Msa0124020:CDS
AAGCTTCGACGCTGCAGAGG+CGG 0.561968 1_3:+51455127 Msa0124020:CDS
CGAGGAGGAGGCAAAATTGG+AGG 0.562051 1_3:+51454987 Msa0124020:CDS
TGGAATGGTAGAGGTATGGA+AGG 0.562760 1_3:+51453492 Msa0124020:CDS
ATTGATAATGGATTATGGAA+TGG 0.563730 1_3:+51453477 Msa0124020:CDS
TCTATGGAGAGATTGAGAAA+AGG 0.563984 1_3:+51453613 Msa0124020:CDS
GCAGAATAAGGGAACAATGA+TGG 0.564406 1_3:+51453527 Msa0124020:CDS
TCAAAGGTTACCACCGTGGA+AGG 0.565345 1_3:+51455188 Msa0124020:CDS
CATGGGATGTATCGTGTATG+GGG 0.566260 1_3:-51452527 None:intergenic
GAAGGCGGTGTCTAAGGGAG+AGG 0.569525 1_3:+51455206 Msa0124020:CDS
AAATTCTTAACCGGAATCAA+AGG 0.570524 1_3:+51455172 Msa0124020:CDS
GTTGAAGAAGGATATGGCAG+AGG 0.570762 1_3:+51455317 Msa0124020:CDS
TGATCCTAAGGTGAAAATGT+TGG 0.573766 1_3:+51454088 Msa0124020:CDS
AATGGTAGAGGTATGGAAGG+AGG 0.575345 1_3:+51453495 Msa0124020:CDS
TGTGTCGGTAAGTGAATTGG+AGG 0.575594 1_3:-51454159 None:intergenic
GCAATGCAATGCGTAATATG+AGG 0.575903 1_3:+51455779 Msa0124020:three_prime_UTR
GATGTAGAAGTATAAATTGG+AGG 0.575910 1_3:+51454408 Msa0124020:intron
AATGGATTATGGAATGGTAG+AGG 0.576630 1_3:+51453483 Msa0124020:CDS
GGGTCTTGACTCATTACCAT+CGG 0.577743 1_3:+51453254 Msa0124020:CDS
AGCTTTGCGCCGGAATCCGA+TGG 0.579218 1_3:-51453270 None:intergenic
GAGGGAGGAATCTGAATCAG+AGG 0.580288 1_3:+51455269 Msa0124020:CDS
TTAAACCGCTCGAACCGAGA+AGG 0.580662 1_3:-51453783 None:intergenic
CAAAAGCTTCGACGCTGCAG+AGG 0.581028 1_3:+51455124 Msa0124020:CDS
GAGAAGCAACAATTTCGTAA+GGG 0.581516 1_3:+51455090 Msa0124020:CDS
GAACGTCGAGACGCGGAGGA+GGG 0.584357 1_3:+51453944 Msa0124020:CDS
TGGAGGAGTACAAAGAAGGG+AGG 0.584753 1_3:+51454425 Msa0124020:CDS
TGGGTGTAGCAGAGGATGAA+TGG 0.587182 1_3:+51454108 Msa0124020:CDS
TAACATTGCAGATCAATCTA+CGG 0.588903 1_3:+51454924 Msa0124020:intron
GCAACAATTTCGTAAGGGGA+AGG 0.588925 1_3:+51455095 Msa0124020:CDS
CCTGTTCTGGAACTTAAGGA+AGG 0.590426 1_3:+51453054 Msa0124020:CDS
AGAGCAGTTGTTGATGCCAA+AGG 0.590682 1_3:+51453132 Msa0124020:CDS
AGATTTGGTCAGAGTTTCGG+AGG 0.592725 1_3:+51455238 Msa0124020:CDS
GAGCCAAAATTGAAGTCCAA+CGG 0.595174 1_3:+51453339 Msa0124020:CDS
TGCATTGATTACAATTACAA+AGG 0.595599 1_3:+51454592 Msa0124020:CDS
GAAGCTATTCTCTGAAACTG+TGG 0.600223 1_3:-51454132 None:intergenic
CTCAAGTTCCGACGAGCACG+GGG 0.601526 1_3:-51453855 None:intergenic
GCAGTTGTTGATGCCAAAGG+AGG 0.602701 1_3:+51453135 Msa0124020:CDS
CTGCTATCTAAAGAAAGCCT+AGG 0.603053 1_3:-51453111 None:intergenic
AGATCTCTGAAGCTTTGCGC+CGG 0.603285 1_3:-51453280 None:intergenic
TGGTTGGGGTGAATGGACGG+TGG 0.603867 1_3:+51455347 Msa0124020:CDS
TGCAGGAGAAGGAAAATCCG+AGG 0.604176 1_3:+51454969 Msa0124020:CDS
CAGTTGTTGATGCCAAAGGA+GGG 0.608108 1_3:+51453136 Msa0124020:CDS
AAAGAGTCTGATGAATGACA+TGG 0.610123 1_3:-51452545 None:intergenic
CATCGTTTGGTAATTGGTGA+AGG 0.612762 1_3:-51454571 None:intergenic
TTCGGGACATTCCTCCGGGT+CGG 0.614158 1_3:-51453924 None:intergenic
AGTCCAACGGTTACACTCAA+CGG 0.615578 1_3:+51453352 Msa0124020:CDS
ATGGGATGTATCGTGTATGG+GGG 0.616414 1_3:-51452526 None:intergenic
TTCATGGAAATTCTCAAGAG+AGG 0.617223 1_3:+51453086 Msa0124020:CDS
CGAGAAACTCAAGTCCGACC+CGG 0.620759 1_3:+51453910 Msa0124020:CDS
TGGAACTTAAGGAAGGTACA+AGG 0.622837 1_3:+51453061 Msa0124020:CDS
GTTTCGGAGGATAAGAGAGA+GGG 0.632682 1_3:+51455251 Msa0124020:CDS
ATGTCCCGAACGTCGAGACG+CGG 0.638053 1_3:+51453937 Msa0124020:CDS
CCTTAAGTTCCAGAACAGGA+AGG 0.638162 1_3:-51453050 None:intergenic
GTCGGTAAGTGAATTGGAGG+TGG 0.638750 1_3:-51454156 None:intergenic
AGTTTCGGAGGATAAGAGAG+AGG 0.638762 1_3:+51455250 Msa0124020:CDS
GAAAATGTTGGGTGTAGCAG+AGG 0.641929 1_3:+51454100 Msa0124020:CDS
AAAGCTTCAGAGATCTGCGT+CGG 0.646577 1_3:+51453287 Msa0124020:CDS
GCTCCGTTGAGTGTAACCGT+TGG 0.647311 1_3:-51453355 None:intergenic
GATATGGCAGAGGAGATGAG+TGG 0.651978 1_3:+51455327 Msa0124020:CDS
TCCCGAACGTCGAGACGCGG+AGG 0.652259 1_3:+51453940 Msa0124020:CDS
AACATATTCACAAACAGATG+GGG 0.656999 1_3:+51452753 Msa0124020:CDS
TATTGTATATACCTCTGTGT+CGG 0.662309 1_3:-51454174 None:intergenic
GAAACTCAAGTCCGACCCGG+AGG 0.662948 1_3:+51453913 Msa0124020:CDS
AAGGTTACCACCGTGGAAGG+CGG 0.664796 1_3:+51455191 Msa0124020:CDS
TGGGATGTATCGTGTATGGG+GGG 0.674816 1_3:-51452525 None:intergenic
ACCTCAATGTAACAAACTAG+AGG 0.681842 1_3:+51455455 Msa0124020:CDS
ACTGCTCAGATAGCGACAGG+AGG 0.695449 1_3:+51454041 Msa0124020:CDS
AAGAGTCTGATGAATGACAT+GGG 0.701526 1_3:-51452544 None:intergenic
CTGGACCGAACAGAAGAATG+CGG 0.704211 1_3:-51453831 None:intergenic
GACCGAACAGAAGAATGCGG+AGG 0.708772 1_3:-51453828 None:intergenic
AGGAGAAGGAAAATCCGAGG+AGG 0.713917 1_3:+51454972 Msa0124020:CDS
AGTGTGTCGAGATCTTGAGA+AGG 0.714039 1_3:-51453660 None:intergenic
GAAGGAGAAGAAGATCTCAG+TGG 0.714102 1_3:-51453765 None:intergenic
GCAACTGCTAATGAGAACGA+CGG 0.720590 1_3:+51453186 Msa0124020:CDS
GGAATCAAAGGTTACCACCG+TGG 0.724541 1_3:+51455184 Msa0124020:CDS
CAGCATAGCGGAGATAACAG+CGG 0.731770 1_3:+51454480 Msa0124020:CDS
CAATTCACTTACCGACACAG+AGG 0.735333 1_3:+51454163 Msa0124020:CDS
GGTGACGGTGATGACAACGC+CGG 0.742306 1_3:-51452994 None:intergenic
TAAGTTGCTGAACAGCATAG+CGG 0.749606 1_3:+51454468 Msa0124020:CDS
TTAGACACCGCCTTCCACGG+TGG 0.789038 1_3:-51455198 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATGTTAATTCTTA+TGG + chr1_3:51453450-51453469 Msa0124020:CDS 10.0%
!! TCAGTAAAAAAAAAATTATT+CGG - chr1_3:51454370-51454389 None:intergenic 10.0%
!! TTTATATTGACATAAAGTTA+TGG - chr1_3:51455701-51455720 None:intergenic 15.0%
!! TAACTTTATGTCAATATAAA+AGG + chr1_3:51455701-51455720 Msa0124020:three_prime_UTR 15.0%
!!! GTTGTTTAATTTTACTTTAG+TGG - chr1_3:51452693-51452712 None:intergenic 20.0%
!! AAACAAACAATAAGATTAGT+CGG - chr1_3:51452927-51452946 None:intergenic 20.0%
!!! ACTAATCTTATTGTTTGTTT+TGG + chr1_3:51452927-51452946 Msa0124020:intron 20.0%
!!! AGTGTTATTGTTAGATTAAT+GGG + chr1_3:51453234-51453253 Msa0124020:CDS 20.0%
!!! TTAAATTCCTAATTTTGTCA+TGG - chr1_3:51455671-51455690 None:intergenic 20.0%
!!! TTATAGACTGAGTTTGTTTT+AGG + chr1_3:51452570-51452589 Msa0124020:five_prime_UTR 25.0%
! TTTAGGAATAGTAGTTGTAA+TGG + chr1_3:51452587-51452606 Msa0124020:five_prime_UTR 25.0%
!! TAATTTTACTTTAGTGGTCA+TGG - chr1_3:51452687-51452706 None:intergenic 25.0%
! AAAACATATTCACAAACAGA+TGG + chr1_3:51452751-51452770 Msa0124020:CDS 25.0%
! AAACATATTCACAAACAGAT+GGG + chr1_3:51452752-51452771 Msa0124020:CDS 25.0%
! AAAAGTGAAGAATGAATTAC+CGG - chr1_3:51452863-51452882 None:intergenic 25.0%
!! CAGTGTTATTGTTAGATTAA+TGG + chr1_3:51453233-51453252 Msa0124020:CDS 25.0%
! TCTTATGGTAACATTGATAA+TGG + chr1_3:51453465-51453484 Msa0124020:CDS 25.0%
!!! GTAACATTGATAATGGATTA+TGG + chr1_3:51453472-51453491 Msa0124020:CDS 25.0%
!!! ATTGATAATGGATTATGGAA+TGG + chr1_3:51453477-51453496 Msa0124020:CDS 25.0%
! TTTCTTCTTGAACTTATCTT+TGG - chr1_3:51454017-51454036 None:intergenic 25.0%
!! TGTGATGTAGAAGTATAAAT+TGG + chr1_3:51454405-51454424 Msa0124020:intron 25.0%
!!! TGCATTGATTACAATTACAA+AGG + chr1_3:51454592-51454611 Msa0124020:CDS 25.0%
! AAATAGGACAAGAAAAAAAG+AGG - chr1_3:51454658-51454677 None:intergenic 25.0%
!!! TTGTGATTTTGTTTATGTGT+CGG + chr1_3:51455011-51455030 Msa0124020:CDS 25.0%
! TTAATGACCATGACAAAATT+AGG + chr1_3:51455661-51455680 Msa0124020:three_prime_UTR 25.0%
! TGGATGATCATTGTTAAATT+TGG + chr1_3:51455730-51455749 Msa0124020:three_prime_UTR 25.0%
! ATGATCATTGTTAAATTTGG+TGG + chr1_3:51455733-51455752 Msa0124020:three_prime_UTR 25.0%
!!! TTGCTTTTGTGTTGTTTTGA+TGG - chr1_3:51452624-51452643 None:intergenic 30.0%
AACATATTCACAAACAGATG+GGG + chr1_3:51452753-51452772 Msa0124020:CDS 30.0%
! AATAAGATTAGTCGGTCATT+GGG - chr1_3:51452919-51452938 None:intergenic 30.0%
!! TCACTTTTGATCTCTTTAAC+CGG - chr1_3:51453018-51453037 None:intergenic 30.0%
TATTGTATATACCTCTGTGT+CGG - chr1_3:51454177-51454196 None:intergenic 30.0%
! GATGTAGAAGTATAAATTGG+AGG + chr1_3:51454408-51454427 Msa0124020:intron 30.0%
ATTGTAATCAATGCATCGTT+TGG - chr1_3:51454587-51454606 None:intergenic 30.0%
!! TTTTCTTGTCCTATTTCTCT+TGG + chr1_3:51454662-51454681 Msa0124020:intron 30.0%
! TTGGATTTTCCAAGAGAAAT+AGG - chr1_3:51454674-51454693 None:intergenic 30.0%
! AAAAGTACACTACTACACAA+TGG - chr1_3:51454850-51454869 None:intergenic 30.0%
!!! TGTGTTTTAGTTGCTGATTA+TGG + chr1_3:51454892-51454911 Msa0124020:intron 30.0%
TAACATTGCAGATCAATCTA+CGG + chr1_3:51454924-51454943 Msa0124020:intron 30.0%
AAATTCTTAACCGGAATCAA+AGG + chr1_3:51455172-51455191 Msa0124020:CDS 30.0%
CTCGTATTCAAGGATTTAAT+TGG + chr1_3:51455402-51455421 Msa0124020:CDS 30.0%
TTCAAAACACAAGCTTTCTT+CGG - chr1_3:51455485-51455504 None:intergenic 30.0%
TAACAGCATCAAAGAAAAAG+AGG + chr1_3:51455516-51455535 Msa0124020:three_prime_UTR 30.0%
AACAGCATCAAAGAAAAAGA+GGG + chr1_3:51455517-51455536 Msa0124020:three_prime_UTR 30.0%
AAAAAGAGGGAGAGAAAAAT+TGG + chr1_3:51455530-51455549 Msa0124020:three_prime_UTR 30.0%
! GTCAATATAAAAGGAAGTGT+TGG + chr1_3:51455710-51455729 Msa0124020:three_prime_UTR 30.0%
! TCATTGTTAAATTTGGTGGT+TGG + chr1_3:51455737-51455756 Msa0124020:three_prime_UTR 30.0%
! CATTGTTAAATTTGGTGGTT+GGG + chr1_3:51455738-51455757 Msa0124020:three_prime_UTR 30.0%
AAGAGTCTGATGAATGACAT+GGG - chr1_3:51452547-51452566 None:intergenic 35.0%
AAAGAGTCTGATGAATGACA+TGG - chr1_3:51452548-51452567 None:intergenic 35.0%
AGGAATAGTAGTTGTAATGG+AGG + chr1_3:51452590-51452609 Msa0124020:five_prime_UTR 35.0%
! AATAGTAGTTGTAATGGAGG+AGG + chr1_3:51452593-51452612 Msa0124020:five_prime_UTR 35.0%
! TTTTACTTTAGTGGTCATGG+TGG - chr1_3:51452684-51452703 None:intergenic 35.0%
TGCCAGAAAGAAAATGGTTA+CGG - chr1_3:51452808-51452827 None:intergenic 35.0%
CAACACTAAAAGATTACCTC+CGG + chr1_3:51452841-51452860 Msa0124020:CDS 35.0%
!!! CTCGTCTCTTTTTTTTTACC+TGG + chr1_3:51452886-51452905 Msa0124020:intron 35.0%
! CAATAAGATTAGTCGGTCAT+TGG - chr1_3:51452920-51452939 None:intergenic 35.0%
TCATCTTTCTCTGATTTCTC+CGG - chr1_3:51452967-51452986 None:intergenic 35.0%
GAGAAATCAGAGAAAGATGA+TGG + chr1_3:51452967-51452986 Msa0124020:CDS 35.0%
TTCATGGAAATTCTCAAGAG+AGG + chr1_3:51453086-51453105 Msa0124020:CDS 35.0%
CATTAGCAGTTGCATTTGTT+CGG - chr1_3:51453179-51453198 None:intergenic 35.0%
! TAACCGTTGGACTTCAATTT+TGG - chr1_3:51453345-51453364 None:intergenic 35.0%
!! AATGGATTATGGAATGGTAG+AGG + chr1_3:51453483-51453502 Msa0124020:CDS 35.0%
ATTATGGAATGGTAGAGGTA+TGG + chr1_3:51453488-51453507 Msa0124020:CDS 35.0%
TAGATCGAATCATTGTGCTT+TGG - chr1_3:51453597-51453616 None:intergenic 35.0%
AAGCACAATGATTCGATCTA+TGG + chr1_3:51453597-51453616 Msa0124020:CDS 35.0%
TCTATGGAGAGATTGAGAAA+AGG + chr1_3:51453613-51453632 Msa0124020:CDS 35.0%
AGTGGTTTCATTAGGACAAT+GGG - chr1_3:51453750-51453769 None:intergenic 35.0%
AAGATCTCAGTGGTTTCATT+AGG - chr1_3:51453758-51453777 None:intergenic 35.0%
CTTATCTTTGGCGAATTAAC+CGG - chr1_3:51454005-51454024 None:intergenic 35.0%
!! TCAATCACTTTTCTCATCCT+GGG - chr1_3:51454071-51454090 None:intergenic 35.0%
!! ATCAATCACTTTTCTCATCC+TGG - chr1_3:51454072-51454091 None:intergenic 35.0%
GAGAAAAGTGATTGATCCTA+AGG + chr1_3:51454076-51454095 Msa0124020:CDS 35.0%
TGATCCTAAGGTGAAAATGT+TGG + chr1_3:51454088-51454107 Msa0124020:CDS 35.0%
GATCCTAAGGTGAAAATGTT+GGG + chr1_3:51454089-51454108 Msa0124020:CDS 35.0%
! AAATTGGAGGAGTACAAAGA+AGG + chr1_3:51454421-51454440 Msa0124020:CDS 35.0%
! AATTGGAGGAGTACAAAGAA+GGG + chr1_3:51454422-51454441 Msa0124020:CDS 35.0%
!! TCTTGACTCGTCTTTTTACA+AGG + chr1_3:51454534-51454553 Msa0124020:CDS 35.0%
! TCAATGCATCGTTTGGTAAT+TGG - chr1_3:51454580-51454599 None:intergenic 35.0%
TGGAAAATCCAAAACCTATG+TGG + chr1_3:51454682-51454701 Msa0124020:intron 35.0%
! TCAAAATGATTGGTCCACAT+AGG - chr1_3:51454699-51454718 None:intergenic 35.0%
!! GACCAATCATTTTGACATCA+GGG + chr1_3:51454704-51454723 Msa0124020:intron 35.0%
AACCCTGATGTCAAAATGAT+TGG - chr1_3:51454709-51454728 None:intergenic 35.0%
TCTTTAGTTGTACAATCACG+TGG + chr1_3:51454788-51454807 Msa0124020:intron 35.0%
CTTTAGTTGTACAATCACGT+GGG + chr1_3:51454789-51454808 Msa0124020:intron 35.0%
TTTAGTTGTACAATCACGTG+GGG + chr1_3:51454790-51454809 Msa0124020:intron 35.0%
AACTAAGTGACAGATTCGTT+GGG - chr1_3:51454823-51454842 None:intergenic 35.0%
AGGAAAATGTCACAATCTTC+AGG - chr1_3:51455063-51455082 None:intergenic 35.0%
! ATTGTTGCTTCTCAAGTAGA+AGG - chr1_3:51455083-51455102 None:intergenic 35.0%
TGAGAAGCAACAATTTCGTA+AGG + chr1_3:51455089-51455108 Msa0124020:CDS 35.0%
GAGAAGCAACAATTTCGTAA+GGG + chr1_3:51455090-51455109 Msa0124020:CDS 35.0%
AGAAGCAACAATTTCGTAAG+GGG + chr1_3:51455091-51455110 Msa0124020:CDS 35.0%
! ATCAGATTTGGTCAGAGTTT+CGG + chr1_3:51455235-51455254 Msa0124020:CDS 35.0%
! TCTGAATCAGAGGATTTGTT+TGG + chr1_3:51455279-51455298 Msa0124020:CDS 35.0%
! GATTTGTTTGGAGTGATATG+TGG + chr1_3:51455291-51455310 Msa0124020:CDS 35.0%
ACCTCAATGTAACAAACTAG+AGG + chr1_3:51455455-51455474 Msa0124020:CDS 35.0%
ACATGGGATGTATCGTGTAT+GGG - chr1_3:51452531-51452550 None:intergenic 40.0%
! GACCGTAACCATTTTCTTTC+TGG + chr1_3:51452803-51452822 Msa0124020:CDS 40.0%
TGCGTTTGCCAGAAAGAAAA+TGG - chr1_3:51452814-51452833 None:intergenic 40.0%
AGTGAAGAATGAATTACCGG+AGG - chr1_3:51452860-51452879 None:intergenic 40.0%
! AGAGAAAGATGATGGCAAAC+CGG + chr1_3:51452975-51452994 Msa0124020:CDS 40.0%
TTGATCTCTTTAACCGGTGA+CGG - chr1_3:51453012-51453031 None:intergenic 40.0%
AAAACAAGTCCTTCCTGTTC+TGG + chr1_3:51453041-51453060 Msa0124020:CDS 40.0%
! TGGAACTTAAGGAAGGTACA+AGG + chr1_3:51453061-51453080 Msa0124020:CDS 40.0%
CTGCTATCTAAAGAAAGCCT+AGG - chr1_3:51453114-51453133 None:intergenic 40.0%
CATTTGTTCGGATCTCTCTA+GGG - chr1_3:51453167-51453186 None:intergenic 40.0%
GAGCCAAAATTGAAGTCCAA+CGG + chr1_3:51453339-51453358 Msa0124020:CDS 40.0%
GCAGAATAAGGGAACAATGA+TGG + chr1_3:51453527-51453546 Msa0124020:CDS 40.0%
! GAATCATTGTGCTTTGGTTC+AGG - chr1_3:51453591-51453610 None:intergenic 40.0%
AGAAAAGGTTGAAGATGCGT+GGG + chr1_3:51453628-51453647 Msa0124020:CDS 40.0%
CACACTCAAGCATATCTTAG+AGG + chr1_3:51453677-51453696 Msa0124020:CDS 40.0%
TCATTAGGACAATGGGAGAT+TGG - chr1_3:51453743-51453762 None:intergenic 40.0%
CAGTGGTTTCATTAGGACAA+TGG - chr1_3:51453751-51453770 None:intergenic 40.0%
TGAGATCTTCTTCTCCTTCT+CGG + chr1_3:51453769-51453788 Msa0124020:CDS 40.0%
TTCGAGCGGTTTAATAGAAC+CGG + chr1_3:51453792-51453811 Msa0124020:CDS 40.0%
GAGCTCGATCATCAAATCTT+GGG - chr1_3:51453881-51453900 None:intergenic 40.0%
TGAGCTCGATCATCAAATCT+TGG - chr1_3:51453882-51453901 None:intergenic 40.0%
!! TGATTCTAGAAGAGTGTCTC+CGG + chr1_3:51453983-51454002 Msa0124020:CDS 40.0%
! ACACCCAACATTTTCACCTT+AGG - chr1_3:51454095-51454114 None:intergenic 40.0%
!! GAAGCTATTCTCTGAAACTG+TGG - chr1_3:51454135-51454154 None:intergenic 40.0%
TAAGTTGCTGAACAGCATAG+CGG + chr1_3:51454468-51454487 Msa0124020:CDS 40.0%
AAACGAGTTACAACCTAGTC+CGG + chr1_3:51454504-51454523 Msa0124020:CDS 40.0%
! CATCGTTTGGTAATTGGTGA+AGG - chr1_3:51454574-51454593 None:intergenic 40.0%
!! TGATTGGTCCACATAGGTTT+TGG - chr1_3:51454693-51454712 None:intergenic 40.0%
!! GGACCAATCATTTTGACATC+AGG + chr1_3:51454703-51454722 Msa0124020:intron 40.0%
TGACATCAGGGTTAATGACT+TGG + chr1_3:51454716-51454735 Msa0124020:intron 40.0%
!! ATGACTTGGCATGACTTGTT+TGG + chr1_3:51454730-51454749 Msa0124020:intron 40.0%
CAACTAAGTGACAGATTCGT+TGG - chr1_3:51454824-51454843 None:intergenic 40.0%
CGGAATCAGAAGATGATATG+TGG + chr1_3:51454944-51454963 Msa0124020:CDS 40.0%
! GTTAATTTTCGACACGTTGC+AGG + chr1_3:51455149-51455168 Msa0124020:CDS 40.0%
CGTTGCAGGAAATTCTTAAC+CGG + chr1_3:51455163-51455182 Msa0124020:CDS 40.0%
GATATGTGGTGTGTTGAAGA+AGG + chr1_3:51455305-51455324 Msa0124020:CDS 40.0%
TGGTGTGTTGAAGAAGGATA+TGG + chr1_3:51455311-51455330 Msa0124020:CDS 40.0%
!! GCCTCTAGTTTGTTACATTG+AGG - chr1_3:51455459-51455478 None:intergenic 40.0%
AAGAGGGAGAGAAAAATTGG+TGG + chr1_3:51455533-51455552 Msa0124020:three_prime_UTR 40.0%
ATGGGATGTATCGTGTATGG+GGG - chr1_3:51452529-51452548 None:intergenic 45.0%
CATGGGATGTATCGTGTATG+GGG - chr1_3:51452530-51452549 None:intergenic 45.0%
GACATGGGATGTATCGTGTA+TGG - chr1_3:51452532-51452551 None:intergenic 45.0%
! AGATTAGTCGGTCATTGGGT+CGG - chr1_3:51452915-51452934 None:intergenic 45.0%
!!! TTTGGTTTTACAGCCGTCAC+CGG + chr1_3:51452945-51452964 Msa0124020:intron 45.0%
TTCTCTGATTTCTCCGGTGA+CGG - chr1_3:51452961-51452980 None:intergenic 45.0%
CCTTAAGTTCCAGAACAGGA+AGG - chr1_3:51453053-51453072 None:intergenic 45.0%
!! CCTTCCTGTTCTGGAACTTA+AGG + chr1_3:51453050-51453069 Msa0124020:CDS 45.0%
CCTTCCTTAAGTTCCAGAAC+AGG - chr1_3:51453057-51453076 None:intergenic 45.0%
!! CCTGTTCTGGAACTTAAGGA+AGG + chr1_3:51453054-51453073 Msa0124020:CDS 45.0%
! AGGAAGGTACAAGGTCTTCA+TGG + chr1_3:51453070-51453089 Msa0124020:CDS 45.0%
AATTCTCAAGAGAGGCTCCT+AGG + chr1_3:51453094-51453113 Msa0124020:CDS 45.0%
AGAGCAGTTGTTGATGCCAA+AGG + chr1_3:51453132-51453151 Msa0124020:CDS 45.0%
CAGTTGTTGATGCCAAAGGA+GGG + chr1_3:51453136-51453155 Msa0124020:CDS 45.0%
GCATTTGTTCGGATCTCTCT+AGG - chr1_3:51453168-51453187 None:intergenic 45.0%
GCAACTGCTAATGAGAACGA+CGG + chr1_3:51453186-51453205 Msa0124020:CDS 45.0%
GGGTCTTGACTCATTACCAT+CGG + chr1_3:51453254-51453273 Msa0124020:CDS 45.0%
GACTCATTACCATCGGATTC+CGG + chr1_3:51453261-51453280 Msa0124020:CDS 45.0%
AAAGCTTCAGAGATCTGCGT+CGG + chr1_3:51453287-51453306 Msa0124020:CDS 45.0%
AGTCCAACGGTTACACTCAA+CGG + chr1_3:51453352-51453371 Msa0124020:CDS 45.0%
TACACTCAACGGAGCAATGT+CGG + chr1_3:51453363-51453382 Msa0124020:CDS 45.0%
! TGGAATGGTAGAGGTATGGA+AGG + chr1_3:51453492-51453511 Msa0124020:CDS 45.0%
! AATGGTAGAGGTATGGAAGG+AGG + chr1_3:51453495-51453514 Msa0124020:CDS 45.0%
AGGAAGAGGGAAGCAGAATA+AGG + chr1_3:51453515-51453534 Msa0124020:CDS 45.0%
GGAAGAGGGAAGCAGAATAA+GGG + chr1_3:51453516-51453535 Msa0124020:CDS 45.0%
GAGAAAAGGTTGAAGATGCG+TGG + chr1_3:51453627-51453646 Msa0124020:CDS 45.0%
TGTCGAGATCTTGAGAAGGT+TGG - chr1_3:51453659-51453678 None:intergenic 45.0%
AGTGTGTCGAGATCTTGAGA+AGG - chr1_3:51453663-51453682 None:intergenic 45.0%
TTAGAGGCTCTGCAGCTTAA+AGG + chr1_3:51453693-51453712 Msa0124020:CDS 45.0%
GAAGGAGAAGAAGATCTCAG+TGG - chr1_3:51453768-51453787 None:intergenic 45.0%
GAAAATGTTGGGTGTAGCAG+AGG + chr1_3:51454100-51454119 Msa0124020:CDS 45.0%
! TGTGTCGGTAAGTGAATTGG+AGG - chr1_3:51454162-51454181 None:intergenic 45.0%
! CTCTGTGTCGGTAAGTGAAT+TGG - chr1_3:51454165-51454184 None:intergenic 45.0%
CAATTCACTTACCGACACAG+AGG + chr1_3:51454163-51454182 Msa0124020:CDS 45.0%
AGAATCATAGCGAGTCATCG+TGG + chr1_3:51454263-51454282 Msa0124020:intron 45.0%
GTTACAACCTAGTCCGGTAT+CGG + chr1_3:51454510-51454529 Msa0124020:CDS 45.0%
! CGTCTTTTTACAAGGACGAG+TGG + chr1_3:51454542-51454561 Msa0124020:CDS 45.0%
!!! AAGCAGACTCTGCTGTTTTG+AGG - chr1_3:51454769-51454788 None:intergenic 45.0%
GAAGATGATATGTGGAGTGC+AGG + chr1_3:51454952-51454971 Msa0124020:CDS 45.0%
GCAACAATTTCGTAAGGGGA+AGG + chr1_3:51455095-51455114 Msa0124020:CDS 45.0%
ACGGTGGTAACCTTTGATTC+CGG - chr1_3:51455185-51455204 None:intergenic 45.0%
GAGAGGAGACACATCAGATT+TGG + chr1_3:51455223-51455242 Msa0124020:CDS 45.0%
! AGATTTGGTCAGAGTTTCGG+AGG + chr1_3:51455238-51455257 Msa0124020:CDS 45.0%
AGTTTCGGAGGATAAGAGAG+AGG + chr1_3:51455250-51455269 Msa0124020:CDS 45.0%
GTTTCGGAGGATAAGAGAGA+GGG + chr1_3:51455251-51455270 Msa0124020:CDS 45.0%
GTTGAAGAAGGATATGGCAG+AGG + chr1_3:51455317-51455336 Msa0124020:CDS 45.0%
CATCGAACGACTCGTATTCA+AGG + chr1_3:51455392-51455411 Msa0124020:CDS 45.0%
TGGGATGTATCGTGTATGGG+GGG - chr1_3:51452528-51452547 None:intergenic 50.0%
TCACAAACAGATGGGGTGCA+TGG + chr1_3:51452760-51452779 Msa0124020:CDS 50.0%
GCAGTTGTTGATGCCAAAGG+AGG + chr1_3:51453135-51453154 Msa0124020:CDS 50.0%
!! AGATCTCTGAAGCTTTGCGC+CGG - chr1_3:51453283-51453302 None:intergenic 50.0%
AAGTCGATCTCTCGAGACTC+TGG - chr1_3:51453316-51453335 None:intergenic 50.0%
! AGAGGTATGGAAGGAGGAAG+AGG + chr1_3:51453501-51453520 Msa0124020:CDS 50.0%
GAGGTATGGAAGGAGGAAGA+GGG + chr1_3:51453502-51453521 Msa0124020:CDS 50.0%
TTAAACCGCTCGAACCGAGA+AGG - chr1_3:51453786-51453805 None:intergenic 50.0%
CGGAGGAGGAGAATCATAAC+CGG - chr1_3:51453814-51453833 None:intergenic 50.0%
CTCCTCCGCATTCTTCTGTT+CGG + chr1_3:51453826-51453845 Msa0124020:CDS 50.0%
CTGGACCGAACAGAAGAATG+CGG - chr1_3:51453834-51453853 None:intergenic 50.0%
! CGGAGGAGGGTTAGTAATGA+GGG + chr1_3:51453957-51453976 Msa0124020:CDS 50.0%
TGGGTGTAGCAGAGGATGAA+TGG + chr1_3:51454108-51454127 Msa0124020:CDS 50.0%
GTCGGTAAGTGAATTGGAGG+TGG - chr1_3:51454159-51454178 None:intergenic 50.0%
! TGGAGGAGTACAAAGAAGGG+AGG + chr1_3:51454425-51454444 Msa0124020:CDS 50.0%
! CAGCATAGCGGAGATAACAG+CGG + chr1_3:51454480-51454499 Msa0124020:CDS 50.0%
TCAAGAACCGATACCGGACT+AGG - chr1_3:51454520-51454539 None:intergenic 50.0%
GACGAGTCAAGAACCGATAC+CGG - chr1_3:51454526-51454545 None:intergenic 50.0%
GATATGTGGAGTGCAGGAGA+AGG + chr1_3:51454958-51454977 Msa0124020:CDS 50.0%
TGCAGGAGAAGGAAAATCCG+AGG + chr1_3:51454969-51454988 Msa0124020:CDS 50.0%
AGGAGAAGGAAAATCCGAGG+AGG + chr1_3:51454972-51454991 Msa0124020:CDS 50.0%
AGAAGGAAAATCCGAGGAGG+AGG + chr1_3:51454975-51454994 Msa0124020:CDS 50.0%
ATCCGAGGAGGAGGCAAAAT+TGG + chr1_3:51454984-51455003 Msa0124020:CDS 50.0%
! CTCCAATTTTGCCTCCTCCT+CGG - chr1_3:51454989-51455008 None:intergenic 50.0%
GGAATCAAAGGTTACCACCG+TGG + chr1_3:51455184-51455203 Msa0124020:CDS 50.0%
TCAAAGGTTACCACCGTGGA+AGG + chr1_3:51455188-51455207 Msa0124020:CDS 50.0%
GAGGGAGGAATCTGAATCAG+AGG + chr1_3:51455269-51455288 Msa0124020:CDS 50.0%
GATATGGCAGAGGAGATGAG+TGG + chr1_3:51455327-51455346 Msa0124020:CDS 50.0%
AGATGAGTGGTTGGGGTGAA+TGG + chr1_3:51455340-51455359 Msa0124020:CDS 50.0%
!! GGAGATGGGAGATGTCGTTT+TGG + chr1_3:51455368-51455387 Msa0124020:CDS 50.0%
AAACAGATGGGGTGCATGGC+TGG + chr1_3:51452764-51452783 Msa0124020:CDS 55.0%
! TCTAGGGTGAAGCCCTCCTT+TGG - chr1_3:51453151-51453170 None:intergenic 55.0%
GCTCCGTTGAGTGTAACCGT+TGG - chr1_3:51453358-51453377 None:intergenic 55.0%
! TCAACGGAGCAATGTCGGCT+CGG + chr1_3:51453368-51453387 Msa0124020:CDS 55.0%
! CTTCTCCTTCTCGGTTCGAG+CGG + chr1_3:51453778-51453797 Msa0124020:CDS 55.0%
CGAACAGAAGAATGCGGAGG+AGG - chr1_3:51453828-51453847 None:intergenic 55.0%
GACCGAACAGAAGAATGCGG+AGG - chr1_3:51453831-51453850 None:intergenic 55.0%
CGAGAAACTCAAGTCCGACC+CGG + chr1_3:51453910-51453929 Msa0124020:CDS 55.0%
! GCGGAGGAGGGTTAGTAATG+AGG + chr1_3:51453956-51453975 Msa0124020:CDS 55.0%
GCAACTGCTCAGATAGCGAC+AGG + chr1_3:51454038-51454057 Msa0124020:CDS 55.0%
ACTGCTCAGATAGCGACAGG+AGG + chr1_3:51454041-51454060 Msa0124020:CDS 55.0%
CGAGGAGGAGGCAAAATTGG+AGG + chr1_3:51454987-51455006 Msa0124020:CDS 55.0%
CAAAAGCTTCGACGCTGCAG+AGG + chr1_3:51455124-51455143 Msa0124020:CDS 55.0%
AAGGTTACCACCGTGGAAGG+CGG + chr1_3:51455191-51455210 Msa0124020:CDS 55.0%
TCGGAGGATAAGAGAGAGGG+AGG + chr1_3:51455254-51455273 Msa0124020:CDS 55.0%
TGGCAGAGGAGATGAGTGGT+TGG + chr1_3:51455331-51455350 Msa0124020:CDS 55.0%
GGCAGAGGAGATGAGTGGTT+GGG + chr1_3:51455332-51455351 Msa0124020:CDS 55.0%
GCAGAGGAGATGAGTGGTTG+GGG + chr1_3:51455333-51455352 Msa0124020:CDS 55.0%
GAGTGGTTGGGGTGAATGGA+CGG + chr1_3:51455344-51455363 Msa0124020:CDS 55.0%
GGTGAATGGACGGTGGAGAT+GGG + chr1_3:51455354-51455373 Msa0124020:CDS 55.0%
CGGTCATTGGGTCGGATACC+AGG - chr1_3:51452907-51452926 None:intergenic 60.0%
! GGTGACGGTGATGACAACGC+CGG - chr1_3:51452997-51453016 None:intergenic 60.0%
GGCGTTGTCATCACCGTCAC+CGG + chr1_3:51452996-51453015 Msa0124020:CDS 60.0%
AGCTTTGCGCCGGAATCCGA+TGG - chr1_3:51453273-51453292 None:intergenic 60.0%
!! CAACGGAGCAATGTCGGCTC+GGG + chr1_3:51453369-51453388 Msa0124020:CDS 60.0%
CTCAAGTTCCGACGAGCACG+GGG - chr1_3:51453858-51453877 None:intergenic 60.0%
GCTCAAGTTCCGACGAGCAC+GGG - chr1_3:51453859-51453878 None:intergenic 60.0%
GGCTCAAGTTCCGACGAGCA+CGG - chr1_3:51453860-51453879 None:intergenic 60.0%
GAAACTCAAGTCCGACCCGG+AGG + chr1_3:51453913-51453932 Msa0124020:CDS 60.0%
TTCGGGACATTCCTCCGGGT+CGG - chr1_3:51453927-51453946 None:intergenic 60.0%
GACGTTCGGGACATTCCTCC+GGG - chr1_3:51453931-51453950 None:intergenic 60.0%
CGACGTTCGGGACATTCCTC+CGG - chr1_3:51453932-51453951 None:intergenic 60.0%
ATGTCCCGAACGTCGAGACG+CGG + chr1_3:51453937-51453956 Msa0124020:CDS 60.0%
TAGCGACAGGAGGATCTCCC+AGG + chr1_3:51454051-51454070 Msa0124020:CDS 60.0%
AAGCTTCGACGCTGCAGAGG+CGG + chr1_3:51455127-51455146 Msa0124020:CDS 60.0%
TTAGACACCGCCTTCCACGG+TGG - chr1_3:51455201-51455220 None:intergenic 60.0%
ACCGTGGAAGGCGGTGTCTA+AGG + chr1_3:51455200-51455219 Msa0124020:CDS 60.0%
CCCTTAGACACCGCCTTCCA+CGG - chr1_3:51455204-51455223 None:intergenic 60.0%
CCGTGGAAGGCGGTGTCTAA+GGG + chr1_3:51455201-51455220 Msa0124020:CDS 60.0%
GAAGGCGGTGTCTAAGGGAG+AGG + chr1_3:51455206-51455225 Msa0124020:CDS 60.0%
TGGTTGGGGTGAATGGACGG+TGG + chr1_3:51455347-51455366 Msa0124020:CDS 60.0%
GGGTGAATGGACGGTGGAGA+TGG + chr1_3:51455353-51455372 Msa0124020:CDS 60.0%
TCCTCCGCGTCTCGACGTTC+GGG - chr1_3:51453944-51453963 None:intergenic 65.0%
CTCCTCCGCGTCTCGACGTT+CGG - chr1_3:51453945-51453964 None:intergenic 65.0%
GAACGTCGAGACGCGGAGGA+GGG + chr1_3:51453944-51453963 Msa0124020:CDS 65.0%
GGTCCAGTCCCCGTGCTCGT+CGG + chr1_3:51453847-51453866 Msa0124020:CDS 70.0%
GTTCCGACGAGCACGGGGAC+TGG - chr1_3:51453853-51453872 None:intergenic 70.0%
TCCCGAACGTCGAGACGCGG+AGG + chr1_3:51453940-51453959 Msa0124020:CDS 70.0%
CGAACGTCGAGACGCGGAGG+AGG + chr1_3:51453943-51453962 Msa0124020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51452521 51455801 51452521 ID=Msa0124020;Name=Msa0124020
chr1_3 mRNA 51452521 51455801 51452521 ID=Msa0124020-mRNA-1;Parent=Msa0124020;Name=Msa0124020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|1|1|4|298|723
chr1_3 exon 51452521 51452862 51452521 ID=Msa0124020-mRNA-1:exon:15713;Parent=Msa0124020-mRNA-1
chr1_3 exon 51452958 51454184 51452958 ID=Msa0124020-mRNA-1:exon:15714;Parent=Msa0124020-mRNA-1
chr1_3 exon 51454415 51454613 51454415 ID=Msa0124020-mRNA-1:exon:15715;Parent=Msa0124020-mRNA-1
chr1_3 exon 51454935 51455801 51454935 ID=Msa0124020-mRNA-1:exon:15716;Parent=Msa0124020-mRNA-1
chr1_3 five_prime_UTR 51452521 51452685 51452521 ID=Msa0124020-mRNA-1:five_prime_utr;Parent=Msa0124020-mRNA-1
chr1_3 CDS 51452686 51452862 51452686 ID=Msa0124020-mRNA-1:cds;Parent=Msa0124020-mRNA-1
chr1_3 CDS 51452958 51454184 51452958 ID=Msa0124020-mRNA-1:cds;Parent=Msa0124020-mRNA-1
chr1_3 CDS 51454415 51454613 51454415 ID=Msa0124020-mRNA-1:cds;Parent=Msa0124020-mRNA-1
chr1_3 CDS 51454935 51455503 51454935 ID=Msa0124020-mRNA-1:cds;Parent=Msa0124020-mRNA-1
chr1_3 three_prime_UTR 51455504 51455801 51455504 ID=Msa0124020-mRNA-1:three_prime_utr;Parent=Msa0124020-mRNA-1
Gene Sequence

>Msa0124020

ATGACCACTAAAGTAAAATTAAACAACAGCAAAGAAGAAATGATAGACATTGATCACAACTTAGAAAAACATATTCACAAACAGATGGGGTGCATGGCTGGTTTGTTTCAAATCTTCGACCGTAACCATTTTCTTTCTGGCAAACGCATCTACAACAACACTAAAAGATTACCTCCGCCGTCACCGGAGAAATCAGAGAAAGATGATGGCAAACCGGCGTTGTCATCACCGTCACCGGTTAAAGAGATCAAAAGTGAAACAAAACAAGTCCTTCCTGTTCTGGAACTTAAGGAAGGTACAAGGTCTTCATGGAAATTCTCAAGAGAGGCTCCTAGGCTTTCTTTAGATAGCAGAGCAGTTGTTGATGCCAAAGGAGGGCTTCACCCTAGAGAGATCCGAACAAATGCAACTGCTAATGAGAACGACGGTGATAAACAGCGTCGTTCTACTAGCAGTGTTATTGTTAGATTAATGGGTCTTGACTCATTACCATCGGATTCCGGCGCAAAGCTTCAGAGATCTGCGTCGGAGTCCAGAGTCTCGAGAGATCGACTTTCAGAGCCAAAATTGAAGTCCAACGGTTACACTCAACGGAGCAATGTCGGCTCGGGACAGATGAATAATCATAATCATCATCGTTCTAATACTAATTCTAATGTTGTTAATGTTAATAATAATGTTAATTCTTATGGTAACATTGATAATGGATTATGGAATGGTAGAGGTATGGAAGGAGGAAGAGGGAAGCAGAATAAGGGAACAATGATGGTGCAAAAGAAGAGTTTCTATGATTCTGCTGATTTCTTTCCTGAACCAAAGCACAATGATTCGATCTATGGAGAGATTGAGAAAAGGTTGAAGATGCGTGGGATTAACCAACCTTCTCAAGATCTCGACACACTCAAGCATATCTTAGAGGCTCTGCAGCTTAAAGGTTTGCTTCATTCGCAAAAACATGACCAATCTCCCATTGTCCTAATGAAACCACTGAGATCTTCTTCTCCTTCTCGGTTCGAGCGGTTTAATAGAACCGGTTATGATTCTCCTCCTCCGCATTCTTCTGTTCGGTCCAGTCCCCGTGCTCGTCGGAACTTGAGCCCAAGATTTGATGATCGAGCTCAAGTTAATTCGAGAAACTCAAGTCCGACCCGGAGGAATGTCCCGAACGTCGAGACGCGGAGGAGGGTTAGTAATGAGGGTGTTGATTCTAGAAGAGTGTCTCCGGTTAATTCGCCAAAGATAAGTTCAAGAAGAAATGCAACTGCTCAGATAGCGACAGGAGGATCTCCCAGGATGAGAAAAGTGATTGATCCTAAGGTGAAAATGTTGGGTGTAGCAGAGGATGAATGGTCCACAGTTTCAGAGAATAGCTTCACCACCTCCAATTCACTTACCGACACAGAGAAGTATAAATTGGAGGAGTACAAAGAAGGGAGGAATCTGCTTGATAGATGTGATAAGTTGCTGAACAGCATAGCGGAGATAACAGCGGCAAACGAGTTACAACCTAGTCCGGTATCGGTTCTTGACTCGTCTTTTTACAAGGACGAGTGGTGCTCACCTTCACCAATTACCAAACGATGCATTGATTACAATTACAAAGATCAATCTACGGAATCAGAAGATGATATGTGGAGTGCAGGAGAAGGAAAATCCGAGGAGGAGGCAAAATTGGAGGATTGTGATTTTGTTTATGTGTCGGAGATTCTACGAGTTTCTAGTTACTTGCCTGAAGATTGTGACATTTTCCTTCTACTTGAGAAGCAACAATTTCGTAAGGGGAAGGATACTTCAAAAGCTTCGACGCTGCAGAGGCGGTTAATTTTCGACACGTTGCAGGAAATTCTTAACCGGAATCAAAGGTTACCACCGTGGAAGGCGGTGTCTAAGGGAGAGGAGACACATCAGATTTGGTCAGAGTTTCGGAGGATAAGAGAGAGGGAGGAATCTGAATCAGAGGATTTGTTTGGAGTGATATGTGGTGTGTTGAAGAAGGATATGGCAGAGGAGATGAGTGGTTGGGGTGAATGGACGGTGGAGATGGGAGATGTCGTTTTGGACATCGAACGACTCGTATTCAAGGATTTAATTGGCGAAACTATACAAGATCTTGCTTCATTTGCACCTCAATGTAACAAACTAGAGGCGCTCCGAAGAAAGCTTGTGTTTTGA
Protein sequence

>Msa0124020

MTTKVKLNNSKEEMIDIDHNLEKHIHKQMGCMAGLFQIFDRNHFLSGKRIYNNTKRLPPPSPEKSEKDDGKPALSSPSPVKEIKSETKQVLPVLELKEGTRSSWKFSREAPRLSLDSRAVVDAKGGLHPREIRTNATANENDGDKQRRSTSSVIVRLMGLDSLPSDSGAKLQRSASESRVSRDRLSEPKLKSNGYTQRSNVGSGQMNNHNHHRSNTNSNVVNVNNNVNSYGNIDNGLWNGRGMEGGRGKQNKGTMMVQKKSFYDSADFFPEPKHNDSIYGEIEKRLKMRGINQPSQDLDTLKHILEALQLKGLLHSQKHDQSPIVLMKPLRSSSPSRFERFNRTGYDSPPPHSSVRSSPRARRNLSPRFDDRAQVNSRNSSPTRRNVPNVETRRRVSNEGVDSRRVSPVNSPKISSRRNATAQIATGGSPRMRKVIDPKVKMLGVAEDEWSTVSENSFTTSNSLTDTEKYKLEEYKEGRNLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFYKDEWCSPSPITKRCIDYNYKDQSTESEDDMWSAGEGKSEEEAKLEDCDFVYVSEILRVSSYLPEDCDIFLLLEKQQFRKGKDTSKASTLQRRLIFDTLQEILNRNQRLPPWKAVSKGEETHQIWSEFRRIREREESESEDLFGVICGVLKKDMAEEMSGWGEWTVEMGDVVLDIERLVFKDLIGETIQDLASFAPQCNKLEALRRKLVF*