AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168480 MtrunA17_Chr1g0184931 96.006 726 21 3 1 722 1 722 0.0 1424
Msa0168480 MtrunA17_Chr7g0260511 49.662 739 255 30 12 722 4 653 3.91e-179 526
Msa0168480 MtrunA17_Chr7g0219501 29.104 268 136 13 492 713 667 926 1.06e-13 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168480 AT3G63430.2 37.002 627 221 22 103 722 49 508 2.84e-101 320
Msa0168480 AT3G63430.1 35.021 711 279 27 21 722 4 540 1.18e-98 315
Msa0168480 AT5G15580.1 28.223 287 113 12 501 706 639 913 2.11e-14 77.8

Find 210 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATAATGTTAATTCTTA+TGG 0.170803 1_4:+51120713 Msa0168480:CDS
TTAATGACCATGACAAAATT+AGG 0.176366 1_4:+51122924 Msa0168480:three_prime_UTR
TAACCGTTGGACTTCAATTT+TGG 0.196054 1_4:-51120605 None:intergenic
TTAGAGGCTCTGCAGCTTAA+AGG 0.226674 1_4:+51120956 Msa0168480:CDS
AGGAAGAGGGAAGCAGAATA+AGG 0.226928 1_4:+51120778 Msa0168480:CDS
CAGTGTTATTGTTAGATTAA+TGG 0.236552 1_4:+51120496 Msa0168480:CDS
TCTTATGGTAACATTGATAA+TGG 0.256110 1_4:+51120728 Msa0168480:CDS
TCAATGCATCGTTTGGTAAT+TGG 0.266872 1_4:-51121840 None:intergenic
CTCCTCCGCGCCTCGACGTT+CGG 0.271027 1_4:-51121205 None:intergenic
TGAGATCTTCTTCTCCTTCT+CGG 0.271871 1_4:+51121032 Msa0168480:CDS
TAACTTTATGTCAATATAAA+AGG 0.278881 1_4:+51122964 Msa0168480:three_prime_UTR
TGTGATGTAGAAGTATAAAT+TGG 0.285153 1_4:+51121668 Msa0168480:intron
AGTGTTATTGTTAGATTAAT+GGG 0.292224 1_4:+51120497 Msa0168480:CDS
CTCGTATTCAAGGATTTAAT+TGG 0.294796 1_4:+51122665 Msa0168480:CDS
TTTCTTCTTGAACTTATCTT+TGG 0.296526 1_4:-51121277 None:intergenic
GTAACATTGATAATGGATTA+TGG 0.301713 1_4:+51120735 Msa0168480:CDS
ATCCGAGGAGGAGGCAAAAT+TGG 0.302398 1_4:+51122247 Msa0168480:CDS
CCTTCCTGTTCTGGAACTTA+AGG 0.317482 1_4:+51120313 Msa0168480:CDS
AAGCACAATGATTCGATCTA+TGG 0.334299 1_4:+51120860 Msa0168480:CDS
GAATCATTGTGCTTTGGTTC+AGG 0.335322 1_4:-51120851 None:intergenic
ATCAGATTTGGTCAGAGTTT+CGG 0.339373 1_4:+51122498 Msa0168480:CDS
GACTCATTACCATCGGATTC+CGG 0.344614 1_4:+51120524 Msa0168480:CDS
TGCGTTTGCCAGAAAGAAAA+TGG 0.347612 1_4:-51120072 None:intergenic
ACCGTGGAAGGCGGTGTCTA+AGG 0.350723 1_4:+51122463 Msa0168480:CDS
AGATGAGTGGTTGGGGTGAA+TGG 0.352171 1_4:+51122603 Msa0168480:CDS
CTCTGTGTCGGTAAGTGAAT+TGG 0.356274 1_4:-51121425 None:intergenic
GATGATTATGATTATTCATC+TGG 0.360249 1_4:-51120655 None:intergenic
CACACTCAAGCATATCTTAG+AGG 0.366231 1_4:+51120940 Msa0168480:CDS
CTTATCTTTGGCGAATTAAC+CGG 0.366934 1_4:-51121265 None:intergenic
TCTGAATCAGAGGATTTGTT+TGG 0.368561 1_4:+51122542 Msa0168480:CDS
GCATTTGTTCGGATCTCTCT+AGG 0.372895 1_4:-51120428 None:intergenic
AAGATCTCAGTGGTTTCATT+AGG 0.374295 1_4:-51121018 None:intergenic
CATTAGCAGTTGCATTTGTT+CGG 0.378994 1_4:-51120439 None:intergenic
TCCTCCGCGCCTCGACGTTC+GGG 0.379144 1_4:-51121204 None:intergenic
AGGAAAATGTCACAATCTTC+AGG 0.380114 1_4:-51122323 None:intergenic
AGAGGTGTGGAAGGAGGAAG+AGG 0.380578 1_4:+51120764 Msa0168480:CDS
GACATGGGGTGTATCGTGTA+TGG 0.382034 1_4:-51119792 None:intergenic
TGAGCTCGATCATCAAATCT+TGG 0.387356 1_4:-51121142 None:intergenic
AAAACAAGTCCTTCCTGTTC+TGG 0.392571 1_4:+51120304 Msa0168480:CDS
CTCCTCCGCATTCTTCTGTT+CGG 0.411229 1_4:+51121089 Msa0168480:CDS
GGGTGAATGGACGGTGGAGA+TGG 0.415119 1_4:+51122616 Msa0168480:CDS
ATTGTAATCAATGCATCGTT+TGG 0.416134 1_4:-51121847 None:intergenic
TCATTAGGACAATGGGAGAT+TGG 0.416704 1_4:-51121003 None:intergenic
TTCAAAACACAAGCTTTCTT+CGG 0.418538 1_4:-51122745 None:intergenic
GAGAGGAGACACATCAGATT+TGG 0.420115 1_4:+51122486 Msa0168480:CDS
AAACAGATGGGGTGCATGGC+TGG 0.422548 1_4:+51120025 Msa0168480:CDS
TTTAGGAATAGTAGTTGTAA+TGG 0.423730 1_4:+51119851 Msa0168480:five_prime_UTR
CGACGTTCGGGACATTCCTC+CGG 0.426000 1_4:-51121192 None:intergenic
TTCTCTGATTTCTCCGGAGA+AGG 0.428779 1_4:-51120221 None:intergenic
TTCGAGCGGTTTAATAGAAC+CGG 0.430201 1_4:+51121055 Msa0168480:CDS
TCTAGGGTGAAGCCCTCCTT+TGG 0.433294 1_4:-51120411 None:intergenic
ATTGTTGCTTCTCAAGTAGA+AGG 0.435159 1_4:-51122343 None:intergenic
TCATCTTTCTCTGATTTCTC+CGG 0.442174 1_4:-51120227 None:intergenic
CGTTGCAGGAAATTCTTAAC+CGG 0.442389 1_4:+51122426 Msa0168480:CDS
GGCAGAGGAGATGAGTGGTT+GGG 0.443076 1_4:+51122595 Msa0168480:CDS
TTTATATTGACATAAAGTTA+TGG 0.445590 1_4:-51122961 None:intergenic
GGAGATGGGAGATGTCGTTT+TGG 0.449346 1_4:+51122631 Msa0168480:CDS
AGGAAGGTACAAGGTCTTCA+TGG 0.452464 1_4:+51120333 Msa0168480:CDS
TAGATCGAATCATTGTGCTT+TGG 0.455948 1_4:-51120857 None:intergenic
GAGAAAAGTGATTGATCCTA+AGG 0.458864 1_4:+51121339 Msa0168480:CDS
AGTGGTTTCATTAGGACAAT+GGG 0.462877 1_4:-51121010 None:intergenic
GTCAATATAAAAGGAAGTGT+TGG 0.463959 1_4:+51122973 Msa0168480:three_prime_UTR
CCTTCCTTAAGTTCCAGAAC+AGG 0.464066 1_4:-51120317 None:intergenic
GGAAGAGGGAAGCAGAATAA+GGG 0.466407 1_4:+51120779 Msa0168480:CDS
CGAACGTCGAGGCGCGGAGG+AGG 0.467855 1_4:+51121206 Msa0168480:CDS
GAGCTCGATCATCAAATCTT+GGG 0.471607 1_4:-51121141 None:intergenic
GACGTTCGGGACATTCCTCC+GGG 0.473521 1_4:-51121191 None:intergenic
AATTGGAGGAGTACAAAGAA+GGG 0.474862 1_4:+51121685 Msa0168480:CDS
ACATGGGGTGTATCGTGTAT+GGG 0.479244 1_4:-51119791 None:intergenic
GACGAGTCAAGAACCGATAC+CGG 0.481313 1_4:-51121786 None:intergenic
GGTGAATGGACGGTGGAGAT+GGG 0.481425 1_4:+51122617 Msa0168480:CDS
TGGTGTGTTGAAGAAGGATA+TGG 0.481990 1_4:+51122574 Msa0168480:CDS
CCGTGGAAGGCGGTGTCTAA+GGG 0.482299 1_4:+51122464 Msa0168480:CDS
CATTGTTAAATGTGGTGGTT+AGG 0.486475 1_4:+51123001 Msa0168480:three_prime_UTR
CAACGGAGCAATGTCGGCTC+GGG 0.488675 1_4:+51120632 Msa0168480:CDS
CCCTTAGACACCGCCTTCCA+CGG 0.493681 1_4:-51122464 None:intergenic
AAGTCGATCTCTCGAGACTC+TGG 0.494700 1_4:-51120576 None:intergenic
GTTCCGACGAGCACGAGGAC+TGG 0.496097 1_4:-51121113 None:intergenic
AGGAATAGTAGTTGTAATGG+AGG 0.501411 1_4:+51119854 Msa0168480:five_prime_UTR
GATATGTGGAGTGCAGGAGA+AGG 0.501417 1_4:+51122221 Msa0168480:CDS
CGAACAGAAGAATGCGGAGG+AGG 0.504857 1_4:-51121088 None:intergenic
AGAGAAAGATGATGGCAAAC+CGG 0.507452 1_4:+51120238 Msa0168480:CDS
AGAAGGAAAATCCGAGGAGG+AGG 0.508110 1_4:+51122238 Msa0168480:CDS
TGCCAGAAAGAAAATGGTTA+CGG 0.509581 1_4:-51120066 None:intergenic
TCAACGGAGCAATGTCGGCT+CGG 0.510393 1_4:+51120631 Msa0168480:CDS
CATCGAACGACTCGTATTCA+AGG 0.510869 1_4:+51122655 Msa0168480:CDS
GAAGATGATATGTGGAGTGC+AGG 0.512219 1_4:+51122215 Msa0168480:CDS
TGAGAAGCAACAATTTCGTA+AGG 0.515455 1_4:+51122352 Msa0168480:CDS
TCGGAGGATAAGAGAGAGGG+AGG 0.516634 1_4:+51122517 Msa0168480:CDS
GCCTCTAGTTTGTTACATTG+AGG 0.516765 1_4:-51122719 None:intergenic
CATTTGTTCGGATCTCTCTA+GGG 0.518783 1_4:-51120427 None:intergenic
GAGTGGTTGGGGTGAATGGA+CGG 0.519523 1_4:+51122607 Msa0168480:CDS
AATAGTAGTTGTAATGGAGG+AGG 0.520542 1_4:+51119857 Msa0168480:five_prime_UTR
AATTCTCAAGAGAGGCTCCT+AGG 0.521742 1_4:+51120357 Msa0168480:CDS
GATCCTAAGGTGAAAATGTT+GGG 0.522669 1_4:+51121352 Msa0168480:CDS
AAATTGGAGGAGTACAAAGA+AGG 0.523276 1_4:+51121684 Msa0168480:CDS
GCGGAGGAGGGTTAGTAATG+AGG 0.525806 1_4:+51121219 Msa0168480:CDS
CTTCTCCTTCTCGGTTCGAG+CGG 0.526908 1_4:+51121041 Msa0168480:CDS
GATTTGTTTGGAGTGATATG+TGG 0.528271 1_4:+51122554 Msa0168480:CDS
CAGTGGTTTCATTAGGACAA+TGG 0.528722 1_4:-51121011 None:intergenic
CGGAGGAGGAGAATCATAAC+CGG 0.529851 1_4:-51121074 None:intergenic
CATGGGGTGTATCGTGTATG+GGG 0.533503 1_4:-51119790 None:intergenic
ACGGTGGTAACCTTTGATTC+CGG 0.533627 1_4:-51122445 None:intergenic
TTGATCTCTTTAACCGGTGA+CGG 0.536844 1_4:-51120272 None:intergenic
TGGCAGAGGAGATGAGTGGT+TGG 0.536868 1_4:+51122594 Msa0168480:CDS
GAGAAATCAGAGAAAGATGA+TGG 0.540245 1_4:+51120230 Msa0168480:CDS
AGAAAAGGTTGAAGATGCGT+GGG 0.541387 1_4:+51120891 Msa0168480:CDS
AAAACATATTCACAAACAGA+TGG 0.541883 1_4:+51120012 Msa0168480:CDS
AAACATATTCACAAACAGAT+GGG 0.541977 1_4:+51120013 Msa0168480:CDS
GTTACAACCTAGTCCGGTAT+CGG 0.542307 1_4:+51121773 Msa0168480:CDS
AGAAGCAACAATTTCGTAAG+GGG 0.542314 1_4:+51122354 Msa0168480:CDS
GGCGTTGTCATCACCGTCAC+CGG 0.544136 1_4:+51120259 Msa0168480:CDS
GAGGTGTGGAAGGAGGAAGA+GGG 0.546629 1_4:+51120765 Msa0168480:CDS
TCAAGAACCGATACCGGACT+AGG 0.547333 1_4:-51121780 None:intergenic
GCAACTGCTCAGATAGCGAC+AGG 0.550497 1_4:+51121301 Msa0168480:CDS
AATGGTAGAGGTGTGGAAGG+AGG 0.550698 1_4:+51120758 Msa0168480:CDS
TAGCGACAGGAGGATCTCCT+AGG 0.552987 1_4:+51121314 Msa0168480:CDS
GCAGAGGAGATGAGTGGTTG+GGG 0.553665 1_4:+51122596 Msa0168480:CDS
TACACTCAACGGAGCAATGT+CGG 0.553892 1_4:+51120626 Msa0168480:CDS
GAGAAAAGGTTGAAGATGCG+TGG 0.554159 1_4:+51120890 Msa0168480:CDS
TGATTCTAGAAGAGTGTCTC+CGG 0.554213 1_4:+51121246 Msa0168480:CDS
TGTCGAGATCTTGAGAAGGT+TGG 0.554441 1_4:-51120919 None:intergenic
TCACAAACAGATGGGGTGCA+TGG 0.555175 1_4:+51120021 Msa0168480:CDS
AAACGAGTTACAACCTAGTC+CGG 0.557491 1_4:+51121767 Msa0168480:CDS
GATATGTGGTGTGTTGAAGA+AGG 0.557747 1_4:+51122568 Msa0168480:CDS
CGGAATCAGAAGATGATATG+TGG 0.558896 1_4:+51122207 Msa0168480:CDS
CAACACTAAAAGATTACCTC+CGG 0.560984 1_4:+51120102 Msa0168480:CDS
GAACGTCGAGGCGCGGAGGA+GGG 0.561377 1_4:+51121207 Msa0168480:CDS
AAGCTTCGACGCTGCAGAGG+CGG 0.561968 1_4:+51122390 Msa0168480:CDS
CGAGGAGGAGGCAAAATTGG+AGG 0.562051 1_4:+51122250 Msa0168480:CDS
ATTGATAATGGATTATGGAA+TGG 0.563730 1_4:+51120740 Msa0168480:CDS
TCTATGGAGAGATTGAGAAA+AGG 0.563984 1_4:+51120876 Msa0168480:CDS
GCAGAATAAGGGAACAATGA+TGG 0.564406 1_4:+51120790 Msa0168480:CDS
TCAAAGGTTACCACCGTGGA+AGG 0.565345 1_4:+51122451 Msa0168480:CDS
TGGAATGGTAGAGGTGTGGA+AGG 0.568683 1_4:+51120755 Msa0168480:CDS
GAAGGCGGTGTCTAAGGGAG+AGG 0.569525 1_4:+51122469 Msa0168480:CDS
AAATTCTTAACCGGAATCAA+AGG 0.570524 1_4:+51122435 Msa0168480:CDS
GTTGAAGAAGGATATGGCAG+AGG 0.570762 1_4:+51122580 Msa0168480:CDS
GGTCCAGTCCTCGTGCTCGT+CGG 0.572382 1_4:+51121110 Msa0168480:CDS
CGGAGGAGGGTTAGTAATGA+GGG 0.573458 1_4:+51121220 Msa0168480:CDS
TGATCCTAAGGTGAAAATGT+TGG 0.573766 1_4:+51121351 Msa0168480:CDS
TGTGTCGGTAAGTGAATTGG+AGG 0.575594 1_4:-51121422 None:intergenic
GCAATGCAATGCGTAATATG+AGG 0.575903 1_4:+51123042 Msa0168480:three_prime_UTR
GATGTAGAAGTATAAATTGG+AGG 0.575910 1_4:+51121671 Msa0168480:intron
AAGAGTCTCATGAATGACAT+GGG 0.577717 1_4:-51119807 None:intergenic
GGGTCTTGACTCATTACCAT+CGG 0.577743 1_4:+51120517 Msa0168480:CDS
AGCTTTGCGCCGGAATCCGA+TGG 0.579218 1_4:-51120533 None:intergenic
GAGGGAGGAATCTGAATCAG+AGG 0.580288 1_4:+51122532 Msa0168480:CDS
TTAAACCGCTCGAACCGAGA+AGG 0.580662 1_4:-51121046 None:intergenic
TGGATGATCATTGTTAAATG+TGG 0.580980 1_4:+51122993 Msa0168480:three_prime_UTR
CAAAAGCTTCGACGCTGCAG+AGG 0.581028 1_4:+51122387 Msa0168480:CDS
GAGAAGCAACAATTTCGTAA+GGG 0.581516 1_4:+51122353 Msa0168480:CDS
TGGAGGAGTACAAAGAAGGG+AGG 0.584753 1_4:+51121688 Msa0168480:CDS
ATGATCATTGTTAAATGTGG+TGG 0.585349 1_4:+51122996 Msa0168480:three_prime_UTR
TGGGTGTAGCAGAGGATGAA+TGG 0.587182 1_4:+51121371 Msa0168480:CDS
GCAACAATTTCGTAAGGGGA+AGG 0.588925 1_4:+51122358 Msa0168480:CDS
CCTGTTCTGGAACTTAAGGA+AGG 0.590426 1_4:+51120317 Msa0168480:CDS
AGAGCAGTTGTTGATGCCAA+AGG 0.590682 1_4:+51120395 Msa0168480:CDS
CTCAAGTTCCGACGAGCACG+AGG 0.592627 1_4:-51121118 None:intergenic
AGATTTGGTCAGAGTTTCGG+AGG 0.592725 1_4:+51122501 Msa0168480:CDS
AAAGAGTCTCATGAATGACA+TGG 0.593680 1_4:-51119808 None:intergenic
GAGCCAAAATTGAAGTCCAA+CGG 0.595174 1_4:+51120602 Msa0168480:CDS
TGCATTGATTACAATTACAA+AGG 0.595599 1_4:+51121855 Msa0168480:CDS
TAACACTGCAGATCAATCTA+CGG 0.598839 1_4:+51122187 Msa0168480:intron
GAAGCTATTCTCTGAAACTG+TGG 0.600223 1_4:-51121395 None:intergenic
GCAGTTGTTGATGCCAAAGG+AGG 0.602701 1_4:+51120398 Msa0168480:CDS
CTGCTATCTAAAGAAAGCCT+AGG 0.603053 1_4:-51120374 None:intergenic
AGATCTCTGAAGCTTTGCGC+CGG 0.603285 1_4:-51120543 None:intergenic
TGGTTGGGGTGAATGGACGG+TGG 0.603867 1_4:+51122610 Msa0168480:CDS
TGCAGGAGAAGGAAAATCCG+AGG 0.604176 1_4:+51122232 Msa0168480:CDS
CAGTTGTTGATGCCAAAGGA+GGG 0.608108 1_4:+51120399 Msa0168480:CDS
CATCGTTTGGTAATTGGTGA+AGG 0.612762 1_4:-51121834 None:intergenic
TTCGGGACATTCCTCCGGGT+CGG 0.614158 1_4:-51121187 None:intergenic
AGTCCAACGGTTACACTCAA+CGG 0.615578 1_4:+51120615 Msa0168480:CDS
TTCATGGAAATTCTCAAGAG+AGG 0.617223 1_4:+51120349 Msa0168480:CDS
TCCCGAACGTCGAGGCGCGG+AGG 0.618120 1_4:+51121203 Msa0168480:CDS
ATGTCCCGAACGTCGAGGCG+CGG 0.620714 1_4:+51121200 Msa0168480:CDS
CGAGAAACTCAAGTCCGACC+CGG 0.620759 1_4:+51121173 Msa0168480:CDS
TGGAACTTAAGGAAGGTACA+AGG 0.622837 1_4:+51120324 Msa0168480:CDS
GTTTCGGAGGATAAGAGAGA+GGG 0.632682 1_4:+51122514 Msa0168480:CDS
AATGGATTATGGAATGGTAG+AGG 0.636093 1_4:+51120746 Msa0168480:CDS
ATTATGGAATGGTAGAGGTG+TGG 0.636364 1_4:+51120751 Msa0168480:CDS
CCTTAAGTTCCAGAACAGGA+AGG 0.638162 1_4:-51120313 None:intergenic
GTCGGTAAGTGAATTGGAGG+TGG 0.638750 1_4:-51121419 None:intergenic
AGTTTCGGAGGATAAGAGAG+AGG 0.638762 1_4:+51122513 Msa0168480:CDS
GAAAATGTTGGGTGTAGCAG+AGG 0.641929 1_4:+51121363 Msa0168480:CDS
AAAGCTTCAGAGATCTGCGT+CGG 0.646577 1_4:+51120550 Msa0168480:CDS
GCTCCGTTGAGTGTAACCGT+TGG 0.647311 1_4:-51120618 None:intergenic
GATATGGCAGAGGAGATGAG+TGG 0.651978 1_4:+51122590 Msa0168480:CDS
AACATATTCACAAACAGATG+GGG 0.656999 1_4:+51120014 Msa0168480:CDS
TATTGTATATACCTCTGTGT+CGG 0.662309 1_4:-51121437 None:intergenic
GAAACTCAAGTCCGACCCGG+AGG 0.662948 1_4:+51121176 Msa0168480:CDS
ATGGGGTGTATCGTGTATGG+GGG 0.664475 1_4:-51119789 None:intergenic
AAGGTTACCACCGTGGAAGG+CGG 0.664796 1_4:+51122454 Msa0168480:CDS
ACCTCAATGTAACAAACTAG+AGG 0.681842 1_4:+51122718 Msa0168480:CDS
ACTGCTCAGATAGCGACAGG+AGG 0.695449 1_4:+51121304 Msa0168480:CDS
AGAGTCTCATGAATGACATG+GGG 0.699253 1_4:-51119806 None:intergenic
GAGGAATGTCCCGAACGTCG+AGG 0.702069 1_4:+51121195 Msa0168480:CDS
CTGGACCGAACAGAAGAATG+CGG 0.704211 1_4:-51121094 None:intergenic
GACCGAACAGAAGAATGCGG+AGG 0.708772 1_4:-51121091 None:intergenic
AGGAGAAGGAAAATCCGAGG+AGG 0.713917 1_4:+51122235 Msa0168480:CDS
AGTGTGTCGAGATCTTGAGA+AGG 0.714039 1_4:-51120923 None:intergenic
GAAGGAGAAGAAGATCTCAG+TGG 0.714102 1_4:-51121028 None:intergenic
GCAACTGCTAATGAGAACGA+CGG 0.720590 1_4:+51120449 Msa0168480:CDS
GGAATCAAAGGTTACCACCG+TGG 0.724541 1_4:+51122447 Msa0168480:CDS
CAGCATAGCGGAGATAACAG+CGG 0.731770 1_4:+51121743 Msa0168480:CDS
CAATTCACTTACCGACACAG+AGG 0.735333 1_4:+51121426 Msa0168480:CDS
GGTGACGGTGATGACAACGC+CGG 0.742306 1_4:-51120257 None:intergenic
TAAGTTGCTGAACAGCATAG+CGG 0.749606 1_4:+51121731 Msa0168480:CDS
TTAGACACCGCCTTCCACGG+TGG 0.789038 1_4:-51122461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATGTTAATTCTTA+TGG + chr1_4:51120713-51120732 Msa0168480:CDS 10.0%
!! TCAGTAAAAAAAAAATTATT+CGG - chr1_4:51121633-51121652 None:intergenic 10.0%
!! TTTATATTGACATAAAGTTA+TGG - chr1_4:51122964-51122983 None:intergenic 15.0%
!! TAACTTTATGTCAATATAAA+AGG + chr1_4:51122964-51122983 Msa0168480:three_prime_UTR 15.0%
!!! AGTGTTATTGTTAGATTAAT+GGG + chr1_4:51120497-51120516 Msa0168480:CDS 20.0%
!!! TTAAATTCCTAATTTTGTCA+TGG - chr1_4:51122934-51122953 None:intergenic 20.0%
!!! TTATAGAGTGAGTTTGTTTT+AGG + chr1_4:51119834-51119853 Msa0168480:five_prime_UTR 25.0%
! TTTAGGAATAGTAGTTGTAA+TGG + chr1_4:51119851-51119870 Msa0168480:five_prime_UTR 25.0%
!! TAATTTTACTTTAGTGGTCA+TGG - chr1_4:51119951-51119970 None:intergenic 25.0%
!!! GCTGTTTAATTTTACTTTAG+TGG - chr1_4:51119957-51119976 None:intergenic 25.0%
! AAAACATATTCACAAACAGA+TGG + chr1_4:51120012-51120031 Msa0168480:CDS 25.0%
! AAACATATTCACAAACAGAT+GGG + chr1_4:51120013-51120032 Msa0168480:CDS 25.0%
! TGTAAAACCAAAACAAACAA+TGG - chr1_4:51120200-51120219 None:intergenic 25.0%
!! CAGTGTTATTGTTAGATTAA+TGG + chr1_4:51120496-51120515 Msa0168480:CDS 25.0%
! GATGATTATGATTATTCATC+TGG - chr1_4:51120658-51120677 None:intergenic 25.0%
! TCTTATGGTAACATTGATAA+TGG + chr1_4:51120728-51120747 Msa0168480:CDS 25.0%
!!! GTAACATTGATAATGGATTA+TGG + chr1_4:51120735-51120754 Msa0168480:CDS 25.0%
!!! ATTGATAATGGATTATGGAA+TGG + chr1_4:51120740-51120759 Msa0168480:CDS 25.0%
! TTTCTTCTTGAACTTATCTT+TGG - chr1_4:51121280-51121299 None:intergenic 25.0%
!! TGTGATGTAGAAGTATAAAT+TGG + chr1_4:51121668-51121687 Msa0168480:intron 25.0%
!!! TGCATTGATTACAATTACAA+AGG + chr1_4:51121855-51121874 Msa0168480:CDS 25.0%
! AAATAGGACAAGAAAAAAAG+AGG - chr1_4:51121921-51121940 None:intergenic 25.0%
!!! TTGTGATTTTGTTTATGTGT+CGG + chr1_4:51122274-51122293 Msa0168480:CDS 25.0%
! TTAATGACCATGACAAAATT+AGG + chr1_4:51122924-51122943 Msa0168480:three_prime_UTR 25.0%
!!! TTGCTTTTGTGTTGTTTTGA+TGG - chr1_4:51119888-51119907 None:intergenic 30.0%
AACATATTCACAAACAGATG+GGG + chr1_4:51120014-51120033 Msa0168480:CDS 30.0%
GAAAGCAAAGAATGAATTAC+CGG - chr1_4:51120124-51120143 None:intergenic 30.0%
AACAAACAATGGAGATTAGT+CGG - chr1_4:51120189-51120208 None:intergenic 30.0%
! CTAATCTCCATTGTTTGTTT+TGG + chr1_4:51120190-51120209 Msa0168480:intron 30.0%
!! TCACTTTTGATCTCTTTAAC+CGG - chr1_4:51120281-51120300 None:intergenic 30.0%
TATTGTATATACCTCTGTGT+CGG - chr1_4:51121440-51121459 None:intergenic 30.0%
! GATGTAGAAGTATAAATTGG+AGG + chr1_4:51121671-51121690 Msa0168480:intron 30.0%
ATTGTAATCAATGCATCGTT+TGG - chr1_4:51121850-51121869 None:intergenic 30.0%
!! TTTTCTTGTCCTATTTCTCT+TGG + chr1_4:51121925-51121944 Msa0168480:intron 30.0%
! TTGGATTTTCCAAGAGAAAT+AGG - chr1_4:51121937-51121956 None:intergenic 30.0%
! AAAAGTACACTACTACACAA+TGG - chr1_4:51122113-51122132 None:intergenic 30.0%
!!! TGTGTTTTAGTTGCTGATTA+TGG + chr1_4:51122155-51122174 Msa0168480:intron 30.0%
AAATTCTTAACCGGAATCAA+AGG + chr1_4:51122435-51122454 Msa0168480:CDS 30.0%
CTCGTATTCAAGGATTTAAT+TGG + chr1_4:51122665-51122684 Msa0168480:CDS 30.0%
TTCAAAACACAAGCTTTCTT+CGG - chr1_4:51122748-51122767 None:intergenic 30.0%
TAACAGCATCAAAGAAAAAG+AGG + chr1_4:51122779-51122798 Msa0168480:three_prime_UTR 30.0%
AACAGCATCAAAGAAAAAGA+GGG + chr1_4:51122780-51122799 Msa0168480:three_prime_UTR 30.0%
! GTCAATATAAAAGGAAGTGT+TGG + chr1_4:51122973-51122992 Msa0168480:three_prime_UTR 30.0%
TGGATGATCATTGTTAAATG+TGG + chr1_4:51122993-51123012 Msa0168480:three_prime_UTR 30.0%
ATGATCATTGTTAAATGTGG+TGG + chr1_4:51122996-51123015 Msa0168480:three_prime_UTR 30.0%
AAGAGTCTCATGAATGACAT+GGG - chr1_4:51119810-51119829 None:intergenic 35.0%
AAAGAGTCTCATGAATGACA+TGG - chr1_4:51119811-51119830 None:intergenic 35.0%
AGGAATAGTAGTTGTAATGG+AGG + chr1_4:51119854-51119873 Msa0168480:five_prime_UTR 35.0%
! AATAGTAGTTGTAATGGAGG+AGG + chr1_4:51119857-51119876 Msa0168480:five_prime_UTR 35.0%
! TTTTACTTTAGTGGTCATGG+TGG - chr1_4:51119948-51119967 None:intergenic 35.0%
TGCCAGAAAGAAAATGGTTA+CGG - chr1_4:51120069-51120088 None:intergenic 35.0%
CAACACTAAAAGATTACCTC+CGG + chr1_4:51120102-51120121 Msa0168480:CDS 35.0%
TCATCTTTCTCTGATTTCTC+CGG - chr1_4:51120230-51120249 None:intergenic 35.0%
GAGAAATCAGAGAAAGATGA+TGG + chr1_4:51120230-51120249 Msa0168480:CDS 35.0%
TTCATGGAAATTCTCAAGAG+AGG + chr1_4:51120349-51120368 Msa0168480:CDS 35.0%
CATTAGCAGTTGCATTTGTT+CGG - chr1_4:51120442-51120461 None:intergenic 35.0%
! TAACCGTTGGACTTCAATTT+TGG - chr1_4:51120608-51120627 None:intergenic 35.0%
!! AATGGATTATGGAATGGTAG+AGG + chr1_4:51120746-51120765 Msa0168480:CDS 35.0%
TAGATCGAATCATTGTGCTT+TGG - chr1_4:51120860-51120879 None:intergenic 35.0%
AAGCACAATGATTCGATCTA+TGG + chr1_4:51120860-51120879 Msa0168480:CDS 35.0%
TCTATGGAGAGATTGAGAAA+AGG + chr1_4:51120876-51120895 Msa0168480:CDS 35.0%
AGTGGTTTCATTAGGACAAT+GGG - chr1_4:51121013-51121032 None:intergenic 35.0%
AAGATCTCAGTGGTTTCATT+AGG - chr1_4:51121021-51121040 None:intergenic 35.0%
CTTATCTTTGGCGAATTAAC+CGG - chr1_4:51121268-51121287 None:intergenic 35.0%
!! TCAATCACTTTTCTCATCCT+AGG - chr1_4:51121334-51121353 None:intergenic 35.0%
GAGAAAAGTGATTGATCCTA+AGG + chr1_4:51121339-51121358 Msa0168480:CDS 35.0%
TGATCCTAAGGTGAAAATGT+TGG + chr1_4:51121351-51121370 Msa0168480:CDS 35.0%
GATCCTAAGGTGAAAATGTT+GGG + chr1_4:51121352-51121371 Msa0168480:CDS 35.0%
! AAATTGGAGGAGTACAAAGA+AGG + chr1_4:51121684-51121703 Msa0168480:CDS 35.0%
! AATTGGAGGAGTACAAAGAA+GGG + chr1_4:51121685-51121704 Msa0168480:CDS 35.0%
!! TCTTGACTCGTCTTTTTACA+AGG + chr1_4:51121797-51121816 Msa0168480:CDS 35.0%
! TCAATGCATCGTTTGGTAAT+TGG - chr1_4:51121843-51121862 None:intergenic 35.0%
TGGAAAATCCAAAACCTATG+TGG + chr1_4:51121945-51121964 Msa0168480:intron 35.0%
! TCAAAATGATTGGTCCACAT+AGG - chr1_4:51121962-51121981 None:intergenic 35.0%
!! GACCAATCATTTTGACATCA+GGG + chr1_4:51121967-51121986 Msa0168480:intron 35.0%
AACCCTGATGTCAAAATGAT+TGG - chr1_4:51121972-51121991 None:intergenic 35.0%
TCTTTAGTTGTACAATCACG+TGG + chr1_4:51122051-51122070 Msa0168480:intron 35.0%
CTTTAGTTGTACAATCACGT+GGG + chr1_4:51122052-51122071 Msa0168480:intron 35.0%
TTTAGTTGTACAATCACGTG+GGG + chr1_4:51122053-51122072 Msa0168480:intron 35.0%
AACTAAGTGACAGATTCGTT+GGG - chr1_4:51122086-51122105 None:intergenic 35.0%
TAACACTGCAGATCAATCTA+CGG + chr1_4:51122187-51122206 Msa0168480:intron 35.0%
AGGAAAATGTCACAATCTTC+AGG - chr1_4:51122326-51122345 None:intergenic 35.0%
! ATTGTTGCTTCTCAAGTAGA+AGG - chr1_4:51122346-51122365 None:intergenic 35.0%
TGAGAAGCAACAATTTCGTA+AGG + chr1_4:51122352-51122371 Msa0168480:CDS 35.0%
GAGAAGCAACAATTTCGTAA+GGG + chr1_4:51122353-51122372 Msa0168480:CDS 35.0%
AGAAGCAACAATTTCGTAAG+GGG + chr1_4:51122354-51122373 Msa0168480:CDS 35.0%
! ATCAGATTTGGTCAGAGTTT+CGG + chr1_4:51122498-51122517 Msa0168480:CDS 35.0%
! TCTGAATCAGAGGATTTGTT+TGG + chr1_4:51122542-51122561 Msa0168480:CDS 35.0%
! GATTTGTTTGGAGTGATATG+TGG + chr1_4:51122554-51122573 Msa0168480:CDS 35.0%
ACCTCAATGTAACAAACTAG+AGG + chr1_4:51122718-51122737 Msa0168480:CDS 35.0%
AAAAAGAGGGAGGGAAAAAT+TGG + chr1_4:51122793-51122812 Msa0168480:three_prime_UTR 35.0%
CATTGTTAAATGTGGTGGTT+AGG + chr1_4:51123001-51123020 Msa0168480:three_prime_UTR 35.0%
AGAGTCTCATGAATGACATG+GGG - chr1_4:51119809-51119828 None:intergenic 40.0%
! GACCGTAACCATTTTCTTTC+TGG + chr1_4:51120064-51120083 Msa0168480:CDS 40.0%
TGCGTTTGCCAGAAAGAAAA+TGG - chr1_4:51120075-51120094 None:intergenic 40.0%
AGCAAAGAATGAATTACCGG+AGG - chr1_4:51120121-51120140 None:intergenic 40.0%
! ATGGAGATTAGTCGGTCATT+GGG - chr1_4:51120181-51120200 None:intergenic 40.0%
! AATGGAGATTAGTCGGTCAT+TGG - chr1_4:51120182-51120201 None:intergenic 40.0%
!!! TTTGGTTTTACAGCCTTCTC+CGG + chr1_4:51120208-51120227 Msa0168480:intron 40.0%
! AGAGAAAGATGATGGCAAAC+CGG + chr1_4:51120238-51120257 Msa0168480:CDS 40.0%
TTGATCTCTTTAACCGGTGA+CGG - chr1_4:51120275-51120294 None:intergenic 40.0%
AAAACAAGTCCTTCCTGTTC+TGG + chr1_4:51120304-51120323 Msa0168480:CDS 40.0%
! TGGAACTTAAGGAAGGTACA+AGG + chr1_4:51120324-51120343 Msa0168480:CDS 40.0%
CTGCTATCTAAAGAAAGCCT+AGG - chr1_4:51120377-51120396 None:intergenic 40.0%
CATTTGTTCGGATCTCTCTA+GGG - chr1_4:51120430-51120449 None:intergenic 40.0%
GAGCCAAAATTGAAGTCCAA+CGG + chr1_4:51120602-51120621 Msa0168480:CDS 40.0%
ATTATGGAATGGTAGAGGTG+TGG + chr1_4:51120751-51120770 Msa0168480:CDS 40.0%
GCAGAATAAGGGAACAATGA+TGG + chr1_4:51120790-51120809 Msa0168480:CDS 40.0%
! GAATCATTGTGCTTTGGTTC+AGG - chr1_4:51120854-51120873 None:intergenic 40.0%
AGAAAAGGTTGAAGATGCGT+GGG + chr1_4:51120891-51120910 Msa0168480:CDS 40.0%
CACACTCAAGCATATCTTAG+AGG + chr1_4:51120940-51120959 Msa0168480:CDS 40.0%
TCATTAGGACAATGGGAGAT+TGG - chr1_4:51121006-51121025 None:intergenic 40.0%
CAGTGGTTTCATTAGGACAA+TGG - chr1_4:51121014-51121033 None:intergenic 40.0%
TGAGATCTTCTTCTCCTTCT+CGG + chr1_4:51121032-51121051 Msa0168480:CDS 40.0%
TTCGAGCGGTTTAATAGAAC+CGG + chr1_4:51121055-51121074 Msa0168480:CDS 40.0%
GAGCTCGATCATCAAATCTT+GGG - chr1_4:51121144-51121163 None:intergenic 40.0%
TGAGCTCGATCATCAAATCT+TGG - chr1_4:51121145-51121164 None:intergenic 40.0%
!! TGATTCTAGAAGAGTGTCTC+CGG + chr1_4:51121246-51121265 Msa0168480:CDS 40.0%
! ACACCCAACATTTTCACCTT+AGG - chr1_4:51121358-51121377 None:intergenic 40.0%
!! GAAGCTATTCTCTGAAACTG+TGG - chr1_4:51121398-51121417 None:intergenic 40.0%
TAAGTTGCTGAACAGCATAG+CGG + chr1_4:51121731-51121750 Msa0168480:CDS 40.0%
AAACGAGTTACAACCTAGTC+CGG + chr1_4:51121767-51121786 Msa0168480:CDS 40.0%
! CATCGTTTGGTAATTGGTGA+AGG - chr1_4:51121837-51121856 None:intergenic 40.0%
!! TGATTGGTCCACATAGGTTT+TGG - chr1_4:51121956-51121975 None:intergenic 40.0%
!! GGACCAATCATTTTGACATC+AGG + chr1_4:51121966-51121985 Msa0168480:intron 40.0%
TGACATCAGGGTTAATGACT+TGG + chr1_4:51121979-51121998 Msa0168480:intron 40.0%
!! ATGACTTGGCATGACTTGTT+TGG + chr1_4:51121993-51122012 Msa0168480:intron 40.0%
CAACTAAGTGACAGATTCGT+TGG - chr1_4:51122087-51122106 None:intergenic 40.0%
CGGAATCAGAAGATGATATG+TGG + chr1_4:51122207-51122226 Msa0168480:CDS 40.0%
! GTTAATTTTCGACACGTTGC+AGG + chr1_4:51122412-51122431 Msa0168480:CDS 40.0%
CGTTGCAGGAAATTCTTAAC+CGG + chr1_4:51122426-51122445 Msa0168480:CDS 40.0%
GATATGTGGTGTGTTGAAGA+AGG + chr1_4:51122568-51122587 Msa0168480:CDS 40.0%
TGGTGTGTTGAAGAAGGATA+TGG + chr1_4:51122574-51122593 Msa0168480:CDS 40.0%
!! GCCTCTAGTTTGTTACATTG+AGG - chr1_4:51122722-51122741 None:intergenic 40.0%
AGCATCAAAGAAAAAGAGGG+AGG + chr1_4:51122783-51122802 Msa0168480:three_prime_UTR 40.0%
GCATCAAAGAAAAAGAGGGA+GGG + chr1_4:51122784-51122803 Msa0168480:three_prime_UTR 40.0%
ACATGGGGTGTATCGTGTAT+GGG - chr1_4:51119794-51119813 None:intergenic 45.0%
! AGATTAGTCGGTCATTGGGT+CGG - chr1_4:51120177-51120196 None:intergenic 45.0%
TTCTCTGATTTCTCCGGAGA+AGG - chr1_4:51120224-51120243 None:intergenic 45.0%
CCTTAAGTTCCAGAACAGGA+AGG - chr1_4:51120316-51120335 None:intergenic 45.0%
!! CCTTCCTGTTCTGGAACTTA+AGG + chr1_4:51120313-51120332 Msa0168480:CDS 45.0%
CCTTCCTTAAGTTCCAGAAC+AGG - chr1_4:51120320-51120339 None:intergenic 45.0%
!! CCTGTTCTGGAACTTAAGGA+AGG + chr1_4:51120317-51120336 Msa0168480:CDS 45.0%
! AGGAAGGTACAAGGTCTTCA+TGG + chr1_4:51120333-51120352 Msa0168480:CDS 45.0%
AATTCTCAAGAGAGGCTCCT+AGG + chr1_4:51120357-51120376 Msa0168480:CDS 45.0%
AGAGCAGTTGTTGATGCCAA+AGG + chr1_4:51120395-51120414 Msa0168480:CDS 45.0%
CAGTTGTTGATGCCAAAGGA+GGG + chr1_4:51120399-51120418 Msa0168480:CDS 45.0%
GCATTTGTTCGGATCTCTCT+AGG - chr1_4:51120431-51120450 None:intergenic 45.0%
GCAACTGCTAATGAGAACGA+CGG + chr1_4:51120449-51120468 Msa0168480:CDS 45.0%
GGGTCTTGACTCATTACCAT+CGG + chr1_4:51120517-51120536 Msa0168480:CDS 45.0%
GACTCATTACCATCGGATTC+CGG + chr1_4:51120524-51120543 Msa0168480:CDS 45.0%
AAAGCTTCAGAGATCTGCGT+CGG + chr1_4:51120550-51120569 Msa0168480:CDS 45.0%
AGTCCAACGGTTACACTCAA+CGG + chr1_4:51120615-51120634 Msa0168480:CDS 45.0%
TACACTCAACGGAGCAATGT+CGG + chr1_4:51120626-51120645 Msa0168480:CDS 45.0%
AGGAAGAGGGAAGCAGAATA+AGG + chr1_4:51120778-51120797 Msa0168480:CDS 45.0%
GGAAGAGGGAAGCAGAATAA+GGG + chr1_4:51120779-51120798 Msa0168480:CDS 45.0%
GAGAAAAGGTTGAAGATGCG+TGG + chr1_4:51120890-51120909 Msa0168480:CDS 45.0%
TGTCGAGATCTTGAGAAGGT+TGG - chr1_4:51120922-51120941 None:intergenic 45.0%
AGTGTGTCGAGATCTTGAGA+AGG - chr1_4:51120926-51120945 None:intergenic 45.0%
TTAGAGGCTCTGCAGCTTAA+AGG + chr1_4:51120956-51120975 Msa0168480:CDS 45.0%
GAAGGAGAAGAAGATCTCAG+TGG - chr1_4:51121031-51121050 None:intergenic 45.0%
GAAAATGTTGGGTGTAGCAG+AGG + chr1_4:51121363-51121382 Msa0168480:CDS 45.0%
! TGTGTCGGTAAGTGAATTGG+AGG - chr1_4:51121425-51121444 None:intergenic 45.0%
! CTCTGTGTCGGTAAGTGAAT+TGG - chr1_4:51121428-51121447 None:intergenic 45.0%
CAATTCACTTACCGACACAG+AGG + chr1_4:51121426-51121445 Msa0168480:CDS 45.0%
AGAATCATAGCGAGTCATCG+TGG + chr1_4:51121526-51121545 Msa0168480:intron 45.0%
GTTACAACCTAGTCCGGTAT+CGG + chr1_4:51121773-51121792 Msa0168480:CDS 45.0%
! CGTCTTTTTACAAGGACGAG+TGG + chr1_4:51121805-51121824 Msa0168480:CDS 45.0%
!!! AAGCAGACTCTGCTGTTTTG+AGG - chr1_4:51122032-51122051 None:intergenic 45.0%
GAAGATGATATGTGGAGTGC+AGG + chr1_4:51122215-51122234 Msa0168480:CDS 45.0%
GCAACAATTTCGTAAGGGGA+AGG + chr1_4:51122358-51122377 Msa0168480:CDS 45.0%
ACGGTGGTAACCTTTGATTC+CGG - chr1_4:51122448-51122467 None:intergenic 45.0%
GAGAGGAGACACATCAGATT+TGG + chr1_4:51122486-51122505 Msa0168480:CDS 45.0%
! AGATTTGGTCAGAGTTTCGG+AGG + chr1_4:51122501-51122520 Msa0168480:CDS 45.0%
AGTTTCGGAGGATAAGAGAG+AGG + chr1_4:51122513-51122532 Msa0168480:CDS 45.0%
GTTTCGGAGGATAAGAGAGA+GGG + chr1_4:51122514-51122533 Msa0168480:CDS 45.0%
GTTGAAGAAGGATATGGCAG+AGG + chr1_4:51122580-51122599 Msa0168480:CDS 45.0%
CATCGAACGACTCGTATTCA+AGG + chr1_4:51122655-51122674 Msa0168480:CDS 45.0%
AAGAGGGAGGGAAAAATTGG+TGG + chr1_4:51122796-51122815 Msa0168480:three_prime_UTR 45.0%
ATGGGGTGTATCGTGTATGG+GGG - chr1_4:51119792-51119811 None:intergenic 50.0%
CATGGGGTGTATCGTGTATG+GGG - chr1_4:51119793-51119812 None:intergenic 50.0%
GACATGGGGTGTATCGTGTA+TGG - chr1_4:51119795-51119814 None:intergenic 50.0%
TCACAAACAGATGGGGTGCA+TGG + chr1_4:51120021-51120040 Msa0168480:CDS 50.0%
GCAGTTGTTGATGCCAAAGG+AGG + chr1_4:51120398-51120417 Msa0168480:CDS 50.0%
!! AGATCTCTGAAGCTTTGCGC+CGG - chr1_4:51120546-51120565 None:intergenic 50.0%
AAGTCGATCTCTCGAGACTC+TGG - chr1_4:51120579-51120598 None:intergenic 50.0%
! TGGAATGGTAGAGGTGTGGA+AGG + chr1_4:51120755-51120774 Msa0168480:CDS 50.0%
! AATGGTAGAGGTGTGGAAGG+AGG + chr1_4:51120758-51120777 Msa0168480:CDS 50.0%
TTAAACCGCTCGAACCGAGA+AGG - chr1_4:51121049-51121068 None:intergenic 50.0%
CGGAGGAGGAGAATCATAAC+CGG - chr1_4:51121077-51121096 None:intergenic 50.0%
CTCCTCCGCATTCTTCTGTT+CGG + chr1_4:51121089-51121108 Msa0168480:CDS 50.0%
CTGGACCGAACAGAAGAATG+CGG - chr1_4:51121097-51121116 None:intergenic 50.0%
! CGGAGGAGGGTTAGTAATGA+GGG + chr1_4:51121220-51121239 Msa0168480:CDS 50.0%
TGGGTGTAGCAGAGGATGAA+TGG + chr1_4:51121371-51121390 Msa0168480:CDS 50.0%
GTCGGTAAGTGAATTGGAGG+TGG - chr1_4:51121422-51121441 None:intergenic 50.0%
! TGGAGGAGTACAAAGAAGGG+AGG + chr1_4:51121688-51121707 Msa0168480:CDS 50.0%
! CAGCATAGCGGAGATAACAG+CGG + chr1_4:51121743-51121762 Msa0168480:CDS 50.0%
TCAAGAACCGATACCGGACT+AGG - chr1_4:51121783-51121802 None:intergenic 50.0%
GACGAGTCAAGAACCGATAC+CGG - chr1_4:51121789-51121808 None:intergenic 50.0%
GATATGTGGAGTGCAGGAGA+AGG + chr1_4:51122221-51122240 Msa0168480:CDS 50.0%
TGCAGGAGAAGGAAAATCCG+AGG + chr1_4:51122232-51122251 Msa0168480:CDS 50.0%
AGGAGAAGGAAAATCCGAGG+AGG + chr1_4:51122235-51122254 Msa0168480:CDS 50.0%
AGAAGGAAAATCCGAGGAGG+AGG + chr1_4:51122238-51122257 Msa0168480:CDS 50.0%
ATCCGAGGAGGAGGCAAAAT+TGG + chr1_4:51122247-51122266 Msa0168480:CDS 50.0%
! CTCCAATTTTGCCTCCTCCT+CGG - chr1_4:51122252-51122271 None:intergenic 50.0%
GGAATCAAAGGTTACCACCG+TGG + chr1_4:51122447-51122466 Msa0168480:CDS 50.0%
TCAAAGGTTACCACCGTGGA+AGG + chr1_4:51122451-51122470 Msa0168480:CDS 50.0%
GAGGGAGGAATCTGAATCAG+AGG + chr1_4:51122532-51122551 Msa0168480:CDS 50.0%
GATATGGCAGAGGAGATGAG+TGG + chr1_4:51122590-51122609 Msa0168480:CDS 50.0%
AGATGAGTGGTTGGGGTGAA+TGG + chr1_4:51122603-51122622 Msa0168480:CDS 50.0%
!! GGAGATGGGAGATGTCGTTT+TGG + chr1_4:51122631-51122650 Msa0168480:CDS 50.0%
AAACAGATGGGGTGCATGGC+TGG + chr1_4:51120025-51120044 Msa0168480:CDS 55.0%
! TCTAGGGTGAAGCCCTCCTT+TGG - chr1_4:51120414-51120433 None:intergenic 55.0%
GCTCCGTTGAGTGTAACCGT+TGG - chr1_4:51120621-51120640 None:intergenic 55.0%
! TCAACGGAGCAATGTCGGCT+CGG + chr1_4:51120631-51120650 Msa0168480:CDS 55.0%
! AGAGGTGTGGAAGGAGGAAG+AGG + chr1_4:51120764-51120783 Msa0168480:CDS 55.0%
GAGGTGTGGAAGGAGGAAGA+GGG + chr1_4:51120765-51120784 Msa0168480:CDS 55.0%
! CTTCTCCTTCTCGGTTCGAG+CGG + chr1_4:51121041-51121060 Msa0168480:CDS 55.0%
CGAACAGAAGAATGCGGAGG+AGG - chr1_4:51121091-51121110 None:intergenic 55.0%
GACCGAACAGAAGAATGCGG+AGG - chr1_4:51121094-51121113 None:intergenic 55.0%
CGAGAAACTCAAGTCCGACC+CGG + chr1_4:51121173-51121192 Msa0168480:CDS 55.0%
! GCGGAGGAGGGTTAGTAATG+AGG + chr1_4:51121219-51121238 Msa0168480:CDS 55.0%
GCAACTGCTCAGATAGCGAC+AGG + chr1_4:51121301-51121320 Msa0168480:CDS 55.0%
ACTGCTCAGATAGCGACAGG+AGG + chr1_4:51121304-51121323 Msa0168480:CDS 55.0%
TAGCGACAGGAGGATCTCCT+AGG + chr1_4:51121314-51121333 Msa0168480:CDS 55.0%
CGAGGAGGAGGCAAAATTGG+AGG + chr1_4:51122250-51122269 Msa0168480:CDS 55.0%
CAAAAGCTTCGACGCTGCAG+AGG + chr1_4:51122387-51122406 Msa0168480:CDS 55.0%
AAGGTTACCACCGTGGAAGG+CGG + chr1_4:51122454-51122473 Msa0168480:CDS 55.0%
TCGGAGGATAAGAGAGAGGG+AGG + chr1_4:51122517-51122536 Msa0168480:CDS 55.0%
TGGCAGAGGAGATGAGTGGT+TGG + chr1_4:51122594-51122613 Msa0168480:CDS 55.0%
GGCAGAGGAGATGAGTGGTT+GGG + chr1_4:51122595-51122614 Msa0168480:CDS 55.0%
GCAGAGGAGATGAGTGGTTG+GGG + chr1_4:51122596-51122615 Msa0168480:CDS 55.0%
GAGTGGTTGGGGTGAATGGA+CGG + chr1_4:51122607-51122626 Msa0168480:CDS 55.0%
GGTGAATGGACGGTGGAGAT+GGG + chr1_4:51122617-51122636 Msa0168480:CDS 55.0%
! GGTGACGGTGATGACAACGC+CGG - chr1_4:51120260-51120279 None:intergenic 60.0%
GGCGTTGTCATCACCGTCAC+CGG + chr1_4:51120259-51120278 Msa0168480:CDS 60.0%
AGCTTTGCGCCGGAATCCGA+TGG - chr1_4:51120536-51120555 None:intergenic 60.0%
!! CAACGGAGCAATGTCGGCTC+GGG + chr1_4:51120632-51120651 Msa0168480:CDS 60.0%
CTCAAGTTCCGACGAGCACG+AGG - chr1_4:51121121-51121140 None:intergenic 60.0%
GAAACTCAAGTCCGACCCGG+AGG + chr1_4:51121176-51121195 Msa0168480:CDS 60.0%
TTCGGGACATTCCTCCGGGT+CGG - chr1_4:51121190-51121209 None:intergenic 60.0%
GACGTTCGGGACATTCCTCC+GGG - chr1_4:51121194-51121213 None:intergenic 60.0%
CGACGTTCGGGACATTCCTC+CGG - chr1_4:51121195-51121214 None:intergenic 60.0%
GAGGAATGTCCCGAACGTCG+AGG + chr1_4:51121195-51121214 Msa0168480:CDS 60.0%
AAGCTTCGACGCTGCAGAGG+CGG + chr1_4:51122390-51122409 Msa0168480:CDS 60.0%
TTAGACACCGCCTTCCACGG+TGG - chr1_4:51122464-51122483 None:intergenic 60.0%
ACCGTGGAAGGCGGTGTCTA+AGG + chr1_4:51122463-51122482 Msa0168480:CDS 60.0%
CCCTTAGACACCGCCTTCCA+CGG - chr1_4:51122467-51122486 None:intergenic 60.0%
CCGTGGAAGGCGGTGTCTAA+GGG + chr1_4:51122464-51122483 Msa0168480:CDS 60.0%
GAAGGCGGTGTCTAAGGGAG+AGG + chr1_4:51122469-51122488 Msa0168480:CDS 60.0%
TGGTTGGGGTGAATGGACGG+TGG + chr1_4:51122610-51122629 Msa0168480:CDS 60.0%
GGGTGAATGGACGGTGGAGA+TGG + chr1_4:51122616-51122635 Msa0168480:CDS 60.0%
GGTCCAGTCCTCGTGCTCGT+CGG + chr1_4:51121110-51121129 Msa0168480:CDS 65.0%
GTTCCGACGAGCACGAGGAC+TGG - chr1_4:51121116-51121135 None:intergenic 65.0%
ATGTCCCGAACGTCGAGGCG+CGG + chr1_4:51121200-51121219 Msa0168480:CDS 65.0%
TCCTCCGCGCCTCGACGTTC+GGG - chr1_4:51121207-51121226 None:intergenic 70.0%
CTCCTCCGCGCCTCGACGTT+CGG - chr1_4:51121208-51121227 None:intergenic 70.0%
GAACGTCGAGGCGCGGAGGA+GGG + chr1_4:51121207-51121226 Msa0168480:CDS 70.0%
TCCCGAACGTCGAGGCGCGG+AGG + chr1_4:51121203-51121222 Msa0168480:CDS 75.0%
CGAACGTCGAGGCGCGGAGG+AGG + chr1_4:51121206-51121225 Msa0168480:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51119785 51123064 51119785 ID=Msa0168480;Name=Msa0168480
chr1_4 mRNA 51119785 51123064 51119785 ID=Msa0168480-mRNA-1;Parent=Msa0168480;Name=Msa0168480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|1|1|4|298|722
chr1_4 exon 51119785 51120123 51119785 ID=Msa0168480-mRNA-1:exon:15038;Parent=Msa0168480-mRNA-1
chr1_4 exon 51120221 51121447 51120221 ID=Msa0168480-mRNA-1:exon:15039;Parent=Msa0168480-mRNA-1
chr1_4 exon 51121678 51121876 51121678 ID=Msa0168480-mRNA-1:exon:15040;Parent=Msa0168480-mRNA-1
chr1_4 exon 51122198 51123064 51122198 ID=Msa0168480-mRNA-1:exon:15041;Parent=Msa0168480-mRNA-1
chr1_4 five_prime_UTR 51119785 51119949 51119785 ID=Msa0168480-mRNA-1:five_prime_utr;Parent=Msa0168480-mRNA-1
chr1_4 CDS 51119950 51120123 51119950 ID=Msa0168480-mRNA-1:cds;Parent=Msa0168480-mRNA-1
chr1_4 CDS 51120221 51121447 51120221 ID=Msa0168480-mRNA-1:cds;Parent=Msa0168480-mRNA-1
chr1_4 CDS 51121678 51121876 51121678 ID=Msa0168480-mRNA-1:cds;Parent=Msa0168480-mRNA-1
chr1_4 CDS 51122198 51122766 51122198 ID=Msa0168480-mRNA-1:cds;Parent=Msa0168480-mRNA-1
chr1_4 three_prime_UTR 51122767 51123064 51122767 ID=Msa0168480-mRNA-1:three_prime_utr;Parent=Msa0168480-mRNA-1
Gene Sequence

>Msa0168480

ATGACCACTAAAGTAAAATTAAACAGCAAAGAAGAAATGATAGACATTGATCACAACTTAGAAAAACATATTCACAAACAGATGGGGTGCATGGCTGGTTTGTTTCAAATCTTCGACCGTAACCATTTTCTTTCTGGCAAACGCATCTACAACAACACTAAAAGATTACCTCCGCCTTCTCCGGAGAAATCAGAGAAAGATGATGGCAAACCGGCGTTGTCATCACCGTCACCGGTTAAAGAGATCAAAAGTGAAACAAAACAAGTCCTTCCTGTTCTGGAACTTAAGGAAGGTACAAGGTCTTCATGGAAATTCTCAAGAGAGGCTCCTAGGCTTTCTTTAGATAGCAGAGCAGTTGTTGATGCCAAAGGAGGGCTTCACCCTAGAGAGATCCGAACAAATGCAACTGCTAATGAGAACGACGGTGATAAACAGCGTCGTTCTACTAGCAGTGTTATTGTTAGATTAATGGGTCTTGACTCATTACCATCGGATTCCGGCGCAAAGCTTCAGAGATCTGCGTCGGAGTCCAGAGTCTCGAGAGATCGACTTTCAGAGCCAAAATTGAAGTCCAACGGTTACACTCAACGGAGCAATGTCGGCTCGGGCCAGATGAATAATCATAATCATCATCGTTCTAATACTAATTCTAATGTTGTTAATGTTAATAATAATGTTAATTCTTATGGTAACATTGATAATGGATTATGGAATGGTAGAGGTGTGGAAGGAGGAAGAGGGAAGCAGAATAAGGGAACAATGATGGTGCAAAAGAAGAGTTTCTATGATTCTGCTGATTTCTTTCCTGAACCAAAGCACAATGATTCGATCTATGGAGAGATTGAGAAAAGGTTGAAGATGCGTGGGATTAACCAACCTTCTCAAGATCTCGACACACTCAAGCATATCTTAGAGGCTCTGCAGCTTAAAGGTTTGCTTCATTCGCAAAAACATGACCAATCTCCCATTGTCCTAATGAAACCACTGAGATCTTCTTCTCCTTCTCGGTTCGAGCGGTTTAATAGAACCGGTTATGATTCTCCTCCTCCGCATTCTTCTGTTCGGTCCAGTCCTCGTGCTCGTCGGAACTTGAGCCCAAGATTTGATGATCGAGCTCAAGTTAATTCGAGAAACTCAAGTCCGACCCGGAGGAATGTCCCGAACGTCGAGGCGCGGAGGAGGGTTAGTAATGAGGGTGTTGATTCTAGAAGAGTGTCTCCGGTTAATTCGCCAAAGATAAGTTCAAGAAGAAATGCAACTGCTCAGATAGCGACAGGAGGATCTCCTAGGATGAGAAAAGTGATTGATCCTAAGGTGAAAATGTTGGGTGTAGCAGAGGATGAATGGTCCACAGTTTCAGAGAATAGCTTCACCACCTCCAATTCACTTACCGACACAGAGAAGTATAAATTGGAGGAGTACAAAGAAGGGAGGAATCTGCTTGATAGATGTGATAAGTTGCTGAACAGCATAGCGGAGATAACAGCGGCAAACGAGTTACAACCTAGTCCGGTATCGGTTCTTGACTCGTCTTTTTACAAGGACGAGTGGTGCTCACCTTCACCAATTACCAAACGATGCATTGATTACAATTACAAAGATCAATCTACGGAATCAGAAGATGATATGTGGAGTGCAGGAGAAGGAAAATCCGAGGAGGAGGCAAAATTGGAGGATTGTGATTTTGTTTATGTGTCGGAGATTCTACGAGTTTCTAGTTACTTGCCTGAAGATTGTGACATTTTCCTTCTACTTGAGAAGCAACAATTTCGTAAGGGGAAGGATACTTCAAAAGCTTCGACGCTGCAGAGGCGGTTAATTTTCGACACGTTGCAGGAAATTCTTAACCGGAATCAAAGGTTACCACCGTGGAAGGCGGTGTCTAAGGGAGAGGAGACACATCAGATTTGGTCAGAGTTTCGGAGGATAAGAGAGAGGGAGGAATCTGAATCAGAGGATTTGTTTGGAGTGATATGTGGTGTGTTGAAGAAGGATATGGCAGAGGAGATGAGTGGTTGGGGTGAATGGACGGTGGAGATGGGAGATGTCGTTTTGGACATCGAACGACTCGTATTCAAGGATTTAATTGGCGAAACTATACAAGATCTTGCTTCATTTGCACCTCAATGTAACAAACTAGAGGCGCTCCGAAGAAAGCTTGTGTTTTGA
Protein sequence

>Msa0168480

MTTKVKLNSKEEMIDIDHNLEKHIHKQMGCMAGLFQIFDRNHFLSGKRIYNNTKRLPPPSPEKSEKDDGKPALSSPSPVKEIKSETKQVLPVLELKEGTRSSWKFSREAPRLSLDSRAVVDAKGGLHPREIRTNATANENDGDKQRRSTSSVIVRLMGLDSLPSDSGAKLQRSASESRVSRDRLSEPKLKSNGYTQRSNVGSGQMNNHNHHRSNTNSNVVNVNNNVNSYGNIDNGLWNGRGVEGGRGKQNKGTMMVQKKSFYDSADFFPEPKHNDSIYGEIEKRLKMRGINQPSQDLDTLKHILEALQLKGLLHSQKHDQSPIVLMKPLRSSSPSRFERFNRTGYDSPPPHSSVRSSPRARRNLSPRFDDRAQVNSRNSSPTRRNVPNVEARRRVSNEGVDSRRVSPVNSPKISSRRNATAQIATGGSPRMRKVIDPKVKMLGVAEDEWSTVSENSFTTSNSLTDTEKYKLEEYKEGRNLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFYKDEWCSPSPITKRCIDYNYKDQSTESEDDMWSAGEGKSEEEAKLEDCDFVYVSEILRVSSYLPEDCDIFLLLEKQQFRKGKDTSKASTLQRRLIFDTLQEILNRNQRLPPWKAVSKGEETHQIWSEFRRIREREESESEDLFGVICGVLKKDMAEEMSGWGEWTVEMGDVVLDIERLVFKDLIGETIQDLASFAPQCNKLEALRRKLVF*