AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124270 MtrunA17_Chr1g0185191 99.180 244 2 0 1 244 1 244 2.03e-176 484
Msa0124270 MtrunA17_Chr7g0260311 76.170 235 56 0 9 243 3 237 2.96e-115 329
Msa0124270 MtrunA17_Chr7g0260221 59.483 232 94 0 8 239 2 233 1.69e-86 256
Msa0124270 MtrunA17_Chr7g0260241 56.034 232 102 0 8 239 2 233 3.11e-84 251
Msa0124270 MtrunA17_Chr7g0260301 57.322 239 96 3 10 242 4 242 5.67e-83 248
Msa0124270 MtrunA17_Chr1g0209611 50.211 237 113 1 9 240 2 238 9.19e-77 232
Msa0124270 MtrunA17_Chr2g0287051 50.855 234 110 3 12 244 28 257 9.26e-74 225
Msa0124270 MtrunA17_Chr7g0260251 53.719 121 42 2 125 243 3 111 3.62e-30 108
Msa0124270 MtrunA17_Chr7g0260271 57.143 91 37 1 130 220 26 114 2.19e-23 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124270 AT1G03070.2 76.518 247 54 1 1 243 1 247 3.39e-137 385
Msa0124270 AT1G03070.3 76.518 247 54 1 1 243 1 247 3.39e-137 385
Msa0124270 AT1G03070.1 76.518 247 54 1 1 243 1 247 3.39e-137 385
Msa0124270 AT3G63310.1 74.590 244 57 1 1 244 1 239 5.31e-129 364
Msa0124270 AT4G02690.1 74.286 245 59 2 1 241 1 245 4.90e-123 350
Msa0124270 AT4G02690.2 62.449 245 50 3 1 241 1 207 2.85e-90 265
Msa0124270 AT4G14730.1 56.957 230 98 1 10 238 3 232 1.60e-89 264
Msa0124270 AT4G15470.1 52.419 248 111 5 1 244 12 256 1.99e-81 244

Find 80 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGACTCTCTACACATTT+TGG 0.130439 1_3:+51949757 Msa0124270:CDS
GGCTTCTGTCTCCTTATATT+TGG 0.136616 1_3:+51950109 Msa0124270:CDS
TCCACATCTTCTTGAGTTTC+CGG 0.192644 1_3:-51948353 None:intergenic
ATACTAGTTCTTATGGTCTT+TGG 0.193055 1_3:+51949834 Msa0124270:CDS
TTTAGTGGGTTCCACAAATT+TGG 0.224534 1_3:+51950546 Msa0124270:three_prime_UTR
TGGTGCTATACTAGTTCTTA+TGG 0.241827 1_3:+51949827 Msa0124270:CDS
TACTAGTTCTTATGGTCTTT+GGG 0.245956 1_3:+51949835 Msa0124270:CDS
AATTTAGAAGGAAACATATT+TGG 0.248189 1_3:-51950594 None:intergenic
CGAGTGTTCAAAATCAAATT+TGG 0.252785 1_3:+51950467 Msa0124270:three_prime_UTR
TACGAAAACTAGTTCTTATC+TGG 0.264978 1_3:+51950243 Msa0124270:three_prime_UTR
TATGGTCTTTGGGATGATTC+AGG 0.268186 1_3:+51949845 Msa0124270:CDS
TTCCTTGGCCCCTTCTTGTT+TGG 0.270915 1_3:+51949807 Msa0124270:CDS
GAGGGAAAATGCGAGAAAAT+TGG 0.304601 1_3:-51948304 None:intergenic
ATGAAGGACCATCGGAGTTC+GGG 0.308915 1_3:-51948450 None:intergenic
GTTGATGATGTCCAAATATA+AGG 0.321463 1_3:-51950120 None:intergenic
ATTCCTATGATGAATTCATT+TGG 0.330140 1_3:+51950087 Msa0124270:CDS
GTATGCAGAGAAAGTTATTC+TGG 0.331873 1_3:+51949701 Msa0124270:intron
TTCCTATGATGAATTCATTT+GGG 0.372763 1_3:+51950088 Msa0124270:CDS
GTTGAAGTTCTTGTACTCAT+TGG 0.395405 1_3:+51950183 Msa0124270:exon
AAGTTATCTACAATGATCTA+TGG 0.395967 1_3:+51949999 Msa0124270:CDS
GTTGTCCCTGTGTCTCGTAC+TGG 0.405092 1_3:+51950289 Msa0124270:three_prime_UTR
GATGAAGGACCATCGGAGTT+CGG 0.413168 1_3:-51948451 None:intergenic
GGCTATGATTTCAACTTCCT+TGG 0.415448 1_3:+51949792 Msa0124270:CDS
GGTAGCGAAGAAAGTGGAAA+TGG 0.434726 1_3:-51948550 None:intergenic
GGATTATCACACTATTGTTA+AGG 0.447436 1_3:+51950310 Msa0124270:three_prime_UTR
TAGTGAGCAAAGACAGGAAA+AGG 0.461448 1_3:-51950142 None:intergenic
TACAATGATCTATGGTTGCT+TGG 0.466219 1_3:+51950007 Msa0124270:CDS
TCGGGGCTTTCGAGCATCAT+CGG 0.470230 1_3:-51948432 None:intergenic
TTCTTCGCTACCACCGGCGC+TGG 0.472313 1_3:+51948561 Msa0124270:CDS
AGTGGGTTCCACAAATTTGG+TGG 0.478097 1_3:+51950549 Msa0124270:three_prime_UTR
AACTCAAGAAGATGTGGAAT+CGG 0.480322 1_3:+51948358 Msa0124270:exon
GCAAGCAGAAGGTAATTAAT+CGG 0.485670 1_3:-51948746 None:intergenic
CGGGGCTTTCGAGCATCATC+GGG 0.487087 1_3:-51948431 None:intergenic
AGCGCAACGCACTGATGAAA+GGG 0.488809 1_3:-51948614 None:intergenic
TGTGGAACCCACCAAATTTG+TGG 0.489324 1_3:-51950557 None:intergenic
GTGTTCAAAATCAAATTTGG+TGG 0.497271 1_3:+51950470 Msa0124270:three_prime_UTR
AGCCCAAATGAATTCATCAT+AGG 0.498521 1_3:-51950090 None:intergenic
TGAAAATAGTGAGCAAAGAC+AGG 0.506317 1_3:-51950148 None:intergenic
TTGGTGTTTAAGAATAAGTG+TGG 0.511496 1_3:-51950575 None:intergenic
AAGCGCAACGCACTGATGAA+AGG 0.522068 1_3:-51948615 None:intergenic
CGGGTAGAGAGGTCTTGAAC+CGG 0.523484 1_3:-51948412 None:intergenic
TGTTCAAAATCAAATTTGGT+GGG 0.525915 1_3:+51950471 Msa0124270:three_prime_UTR
GTGGGTTCCACAAATTTGGT+GGG 0.526509 1_3:+51950550 Msa0124270:three_prime_UTR
TAGTATAGCACCAAACAAGA+AGG 0.529396 1_3:-51949817 None:intergenic
TTCTGATAATAGTAGTAAAG+AGG 0.538225 1_3:-51948719 None:intergenic
TCCACTTTCTTCGCTACCAC+CGG 0.539244 1_3:+51948555 Msa0124270:CDS
GAGTGAAAACCGCAAGCAGA+AGG 0.540358 1_3:-51948757 None:intergenic
GATTAATTACCTTCTGCTTG+CGG 0.545443 1_3:+51948748 Msa0124270:CDS
CACCAAACAAGAAGGGGCCA+AGG 0.548467 1_3:-51949809 None:intergenic
TCTTGAACCGGTTTCCACAT+CGG 0.552788 1_3:-51948400 None:intergenic
ATTCAATGTTCTCTTGAATG+TGG 0.559333 1_3:+51950410 Msa0124270:three_prime_UTR
AGTATAGATGTTATACTAGT+GGG 0.561706 1_3:+51950503 Msa0124270:three_prime_UTR
TTGGCAGCAATTATATTCTG+TGG 0.570347 1_3:+51950026 Msa0124270:CDS
GTAGCGAAGAAAGTGGAAAT+GGG 0.571169 1_3:-51948549 None:intergenic
TTGAGCTGTGCTTTCACTAG+CGG 0.574404 1_3:+51948803 Msa0124270:CDS
TGTTATATTGACTGCTGTGG+TGG 0.576783 1_3:+51949728 Msa0124270:CDS
TACGAGACACAGGGACAACA+TGG 0.584147 1_3:-51950285 None:intergenic
AGTATAGCACCAAACAAGAA+GGG 0.588101 1_3:-51949816 None:intergenic
ACCGGAAACTCAAGAAGATG+TGG 0.593472 1_3:+51948352 Msa0124270:exon
GACGGCGCCGACAGCGATGG+TGG 0.596967 1_3:-51948511 None:intergenic
TAGTATAGATGTTATACTAG+TGG 0.600318 1_3:+51950502 Msa0124270:three_prime_UTR
AAGAGCGAGACCAGCGCCGG+TGG 0.605231 1_3:-51948571 None:intergenic
TCGAAAGCCCCGAACTCCGA+TGG 0.608560 1_3:+51948442 Msa0124270:CDS
AGCTGTTATATTGACTGCTG+TGG 0.612381 1_3:+51949725 Msa0124270:CDS
TCGAGCATCATCGGGTAGAG+AGG 0.614144 1_3:-51948423 None:intergenic
GATAATCCAGTACGAGACAC+AGG 0.614447 1_3:-51950295 None:intergenic
GAAAGTGGAAATGGGACGAA+CGG 0.622665 1_3:-51948541 None:intergenic
GGGACGAACGGTGACGACGA+CGG 0.624706 1_3:-51948529 None:intergenic
GACGACGGCGCCGACAGCGA+TGG 0.625482 1_3:-51948514 None:intergenic
TTTCTCGACTGAGAAAGTGA+GGG 0.633090 1_3:-51948322 None:intergenic
GTAAAGAGCGAGACCAGCGC+CGG 0.640236 1_3:-51948574 None:intergenic
CTACTCGCCACCATCGCTGT+CGG 0.646355 1_3:+51948504 Msa0124270:CDS
TAGTATAACATCTATACTAG+TGG 0.646932 1_3:-51950498 None:intergenic
TGGAATCGGAATCAACCCTA+CGG 0.653157 1_3:+51948372 Msa0124270:CDS
TGAAGGACCATCGGAGTTCG+GGG 0.666877 1_3:-51948449 None:intergenic
GCCGGTGGTAGCGAAGAAAG+TGG 0.667378 1_3:-51948556 None:intergenic
GTATAGCACCAAACAAGAAG+GGG 0.669417 1_3:-51949815 None:intergenic
ATAATCCAGTACGAGACACA+GGG 0.678164 1_3:-51950294 None:intergenic
TATCTGGTAATAAATCTCTG+TGG 0.692161 1_3:+51950259 Msa0124270:three_prime_UTR
ATTGTAGATAACTTGCCCAG+TGG 0.709735 1_3:-51949990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTGTATTTGGTTAAAATTT+GGG + chr1_3:51948925-51948944 Msa0124270:intron 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_3:51948969-51948988 Msa0124270:intron 20.0%
!!! AATTTCTAGGTTGAAATTTA+GGG + chr1_3:51949030-51949049 Msa0124270:intron 20.0%
!!! TTTTTTTTGTCATTGCAATT+TGG + chr1_3:51949053-51949072 Msa0124270:intron 20.0%
!!! TTTTTTTGTCATTGCAATTT+GGG + chr1_3:51949054-51949073 Msa0124270:intron 20.0%
!! ACAAAGAGAAATATTCATTT+AGG + chr1_3:51949083-51949102 Msa0124270:intron 20.0%
!!! TAACTAGAATTTGACATTTT+AGG + chr1_3:51949120-51949139 Msa0124270:intron 20.0%
!!! TTTGTTATAAATCTTTTCTG+TGG + chr1_3:51949406-51949425 Msa0124270:intron 20.0%
!!! GATTTCAATTTTTTGTTATC+TGG + chr1_3:51949485-51949504 Msa0124270:intron 20.0%
!!! TTTTGTTTTAATCACACAAT+CGG - chr1_3:51949527-51949546 None:intergenic 20.0%
!! TAGTATAAAAACTGTTTAGT+GGG + chr1_3:51950532-51950551 Msa0124270:three_prime_UTR 20.0%
!! TGTGTATTTGGTTAAAATTT+GGG + chr1_3:51948925-51948944 Msa0124270:intron 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_3:51948969-51948988 Msa0124270:intron 20.0%
!!! AATTTCTAGGTTGAAATTTA+GGG + chr1_3:51949030-51949049 Msa0124270:intron 20.0%
!!! TTTTTTTTGTCATTGCAATT+TGG + chr1_3:51949053-51949072 Msa0124270:intron 20.0%
!!! TTTTTTTGTCATTGCAATTT+GGG + chr1_3:51949054-51949073 Msa0124270:intron 20.0%
!! ACAAAGAGAAATATTCATTT+AGG + chr1_3:51949083-51949102 Msa0124270:intron 20.0%
!!! TAACTAGAATTTGACATTTT+AGG + chr1_3:51949120-51949139 Msa0124270:intron 20.0%
!!! TTTGTTATAAATCTTTTCTG+TGG + chr1_3:51949406-51949425 Msa0124270:intron 20.0%
!!! GATTTCAATTTTTTGTTATC+TGG + chr1_3:51949485-51949504 Msa0124270:intron 20.0%
!!! TTTTGTTTTAATCACACAAT+CGG - chr1_3:51949527-51949546 None:intergenic 20.0%
!! TAGTATAAAAACTGTTTAGT+GGG + chr1_3:51950532-51950551 Msa0124270:three_prime_UTR 20.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_3:51948292-51948311 None:intergenic 25.0%
! ATCGAAATTCGAAGAAATTA+GGG - chr1_3:51948648-51948667 None:intergenic 25.0%
! AATCGAAATTCGAAGAAATT+AGG - chr1_3:51948649-51948668 None:intergenic 25.0%
! TTCTGATAATAGTAGTAAAG+AGG - chr1_3:51948722-51948741 None:intergenic 25.0%
! TTGCTTTGATTGTAGTAATT+TGG + chr1_3:51948875-51948894 Msa0124270:intron 25.0%
!! TTTTCTGAATTGTGTGTATT+TGG + chr1_3:51948913-51948932 Msa0124270:intron 25.0%
! GTGTGTATTTGGTTAAAATT+TGG + chr1_3:51948924-51948943 Msa0124270:intron 25.0%
!! CAATTTCTAGGTTGAAATTT+AGG + chr1_3:51949029-51949048 Msa0124270:intron 25.0%
! AGAAATATTCATTTAGGAAC+TGG + chr1_3:51949089-51949108 Msa0124270:intron 25.0%
! CGAATATGTGTTAATTGATT+AGG + chr1_3:51949360-51949379 Msa0124270:intron 25.0%
! ATATGTGTTAATTGATTAGG+TGG + chr1_3:51949363-51949382 Msa0124270:intron 25.0%
! TATGTGTTAATTGATTAGGT+GGG + chr1_3:51949364-51949383 Msa0124270:intron 25.0%
!! TAAATCTTTTCTGTGGTTAT+TGG + chr1_3:51949413-51949432 Msa0124270:intron 25.0%
!! CAAATTTGTAATTTGCAGTT+AGG + chr1_3:51949561-51949580 Msa0124270:intron 25.0%
!! TTTTGCTGAATTTTTCCTAA+TGG + chr1_3:51949667-51949686 Msa0124270:intron 25.0%
!! TTTGCTGAATTTTTCCTAAT+GGG + chr1_3:51949668-51949687 Msa0124270:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_3:51949999-51950018 Msa0124270:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_3:51950087-51950106 Msa0124270:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_3:51950088-51950107 Msa0124270:CDS 25.0%
!!! AAATTTGATTTTGAACACTC+GGG - chr1_3:51950468-51950487 None:intergenic 25.0%
!!! CAAATTTGATTTTGAACACT+CGG - chr1_3:51950469-51950488 None:intergenic 25.0%
! TGTTCAAAATCAAATTTGGT+GGG + chr1_3:51950471-51950490 Msa0124270:three_prime_UTR 25.0%
! TAGTATAACATCTATACTAG+TGG - chr1_3:51950501-51950520 None:intergenic 25.0%
! TAGTATAGATGTTATACTAG+TGG + chr1_3:51950502-51950521 Msa0124270:three_prime_UTR 25.0%
! AGTATAGATGTTATACTAGT+GGG + chr1_3:51950503-51950522 Msa0124270:three_prime_UTR 25.0%
!! CTAAACAGTTTTTATACTAG+TGG - chr1_3:51950531-51950550 None:intergenic 25.0%
! CTAGTATAAAAACTGTTTAG+TGG + chr1_3:51950531-51950550 Msa0124270:three_prime_UTR 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_3:51948292-51948311 None:intergenic 25.0%
! ATCGAAATTCGAAGAAATTA+GGG - chr1_3:51948648-51948667 None:intergenic 25.0%
! AATCGAAATTCGAAGAAATT+AGG - chr1_3:51948649-51948668 None:intergenic 25.0%
! TTCTGATAATAGTAGTAAAG+AGG - chr1_3:51948722-51948741 None:intergenic 25.0%
! TTGCTTTGATTGTAGTAATT+TGG + chr1_3:51948875-51948894 Msa0124270:intron 25.0%
!! TTTTCTGAATTGTGTGTATT+TGG + chr1_3:51948913-51948932 Msa0124270:intron 25.0%
! GTGTGTATTTGGTTAAAATT+TGG + chr1_3:51948924-51948943 Msa0124270:intron 25.0%
!! CAATTTCTAGGTTGAAATTT+AGG + chr1_3:51949029-51949048 Msa0124270:intron 25.0%
! AGAAATATTCATTTAGGAAC+TGG + chr1_3:51949089-51949108 Msa0124270:intron 25.0%
! CGAATATGTGTTAATTGATT+AGG + chr1_3:51949360-51949379 Msa0124270:intron 25.0%
! ATATGTGTTAATTGATTAGG+TGG + chr1_3:51949363-51949382 Msa0124270:intron 25.0%
! TATGTGTTAATTGATTAGGT+GGG + chr1_3:51949364-51949383 Msa0124270:intron 25.0%
!! TAAATCTTTTCTGTGGTTAT+TGG + chr1_3:51949413-51949432 Msa0124270:intron 25.0%
!! CAAATTTGTAATTTGCAGTT+AGG + chr1_3:51949561-51949580 Msa0124270:intron 25.0%
!! TTTTGCTGAATTTTTCCTAA+TGG + chr1_3:51949667-51949686 Msa0124270:intron 25.0%
!! TTTGCTGAATTTTTCCTAAT+GGG + chr1_3:51949668-51949687 Msa0124270:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_3:51949999-51950018 Msa0124270:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_3:51950087-51950106 Msa0124270:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_3:51950088-51950107 Msa0124270:CDS 25.0%
!!! AAATTTGATTTTGAACACTC+GGG - chr1_3:51950468-51950487 None:intergenic 25.0%
!!! CAAATTTGATTTTGAACACT+CGG - chr1_3:51950469-51950488 None:intergenic 25.0%
! TGTTCAAAATCAAATTTGGT+GGG + chr1_3:51950471-51950490 Msa0124270:three_prime_UTR 25.0%
! TAGTATAACATCTATACTAG+TGG - chr1_3:51950501-51950520 None:intergenic 25.0%
! TAGTATAGATGTTATACTAG+TGG + chr1_3:51950502-51950521 Msa0124270:three_prime_UTR 25.0%
! AGTATAGATGTTATACTAGT+GGG + chr1_3:51950503-51950522 Msa0124270:three_prime_UTR 25.0%
!! CTAAACAGTTTTTATACTAG+TGG - chr1_3:51950531-51950550 None:intergenic 25.0%
! CTAGTATAAAAACTGTTTAG+TGG + chr1_3:51950531-51950550 Msa0124270:three_prime_UTR 25.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_3:51948299-51948318 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_3:51948300-51948319 None:intergenic 30.0%
GAAAAGAAAGAAAGCAGAAA+TGG - chr1_3:51948845-51948864 None:intergenic 30.0%
! GGTTAAAATTTGGGATTGAT+TGG + chr1_3:51948934-51948953 Msa0124270:intron 30.0%
!! TGTTGTTTAATTTGTCGACT+TGG + chr1_3:51948995-51949014 Msa0124270:intron 30.0%
GAACTTGAGTTTCAATTTCT+AGG + chr1_3:51949017-51949036 Msa0124270:intron 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_3:51949456-51949475 Msa0124270:intron 30.0%
!!! TAGGAGTTACATTGCTATTT+TGG + chr1_3:51949580-51949599 Msa0124270:intron 30.0%
! TGAATTTTTCCTAATGGGAA+TGG + chr1_3:51949673-51949692 Msa0124270:intron 30.0%
! GAATTTTTCCTAATGGGAAT+GGG + chr1_3:51949674-51949693 Msa0124270:intron 30.0%
! AATTTTTCCTAATGGGAATG+GGG + chr1_3:51949675-51949694 Msa0124270:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_3:51949834-51949853 Msa0124270:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_3:51949835-51949854 Msa0124270:CDS 30.0%
TATTTCACCGTTTAATGTTC+TGG + chr1_3:51949895-51949914 Msa0124270:intron 30.0%
AATGTAGCCAGAACATTAAA+CGG - chr1_3:51949905-51949924 None:intergenic 30.0%
AATGTAGCCAGAACATTAAA+CGG - chr1_3:51949905-51949924 None:intergenic 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_3:51950123-51950142 None:intergenic 30.0%
! TACGAAAACTAGTTCTTATC+TGG + chr1_3:51950243-51950262 Msa0124270:three_prime_UTR 30.0%
TATCTGGTAATAAATCTCTG+TGG + chr1_3:51950259-51950278 Msa0124270:three_prime_UTR 30.0%
GGATTATCACACTATTGTTA+AGG + chr1_3:51950310-51950329 Msa0124270:three_prime_UTR 30.0%
ATTCAATGTTCTCTTGAATG+TGG + chr1_3:51950410-51950429 Msa0124270:three_prime_UTR 30.0%
!! AATTTGATTTTGAACACTCG+GGG - chr1_3:51950467-51950486 None:intergenic 30.0%
CGAGTGTTCAAAATCAAATT+TGG + chr1_3:51950467-51950486 Msa0124270:three_prime_UTR 30.0%
GTGTTCAAAATCAAATTTGG+TGG + chr1_3:51950470-51950489 Msa0124270:three_prime_UTR 30.0%
! TTGGTGTTTAAGAATAAGTG+TGG - chr1_3:51950578-51950597 None:intergenic 30.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_3:51948299-51948318 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_3:51948300-51948319 None:intergenic 30.0%
GAAAAGAAAGAAAGCAGAAA+TGG - chr1_3:51948845-51948864 None:intergenic 30.0%
! GGTTAAAATTTGGGATTGAT+TGG + chr1_3:51948934-51948953 Msa0124270:intron 30.0%
!! TGTTGTTTAATTTGTCGACT+TGG + chr1_3:51948995-51949014 Msa0124270:intron 30.0%
GAACTTGAGTTTCAATTTCT+AGG + chr1_3:51949017-51949036 Msa0124270:intron 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_3:51949456-51949475 Msa0124270:intron 30.0%
!!! TAGGAGTTACATTGCTATTT+TGG + chr1_3:51949580-51949599 Msa0124270:intron 30.0%
! TGAATTTTTCCTAATGGGAA+TGG + chr1_3:51949673-51949692 Msa0124270:intron 30.0%
! GAATTTTTCCTAATGGGAAT+GGG + chr1_3:51949674-51949693 Msa0124270:intron 30.0%
! AATTTTTCCTAATGGGAATG+GGG + chr1_3:51949675-51949694 Msa0124270:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_3:51949834-51949853 Msa0124270:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_3:51949835-51949854 Msa0124270:CDS 30.0%
TATTTCACCGTTTAATGTTC+TGG + chr1_3:51949895-51949914 Msa0124270:intron 30.0%
AATGTAGCCAGAACATTAAA+CGG - chr1_3:51949905-51949924 None:intergenic 30.0%
AATGTAGCCAGAACATTAAA+CGG - chr1_3:51949905-51949924 None:intergenic 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_3:51950123-51950142 None:intergenic 30.0%
! TACGAAAACTAGTTCTTATC+TGG + chr1_3:51950243-51950262 Msa0124270:three_prime_UTR 30.0%
TATCTGGTAATAAATCTCTG+TGG + chr1_3:51950259-51950278 Msa0124270:three_prime_UTR 30.0%
GGATTATCACACTATTGTTA+AGG + chr1_3:51950310-51950329 Msa0124270:three_prime_UTR 30.0%
ATTCAATGTTCTCTTGAATG+TGG + chr1_3:51950410-51950429 Msa0124270:three_prime_UTR 30.0%
!! AATTTGATTTTGAACACTCG+GGG - chr1_3:51950467-51950486 None:intergenic 30.0%
CGAGTGTTCAAAATCAAATT+TGG + chr1_3:51950467-51950486 Msa0124270:three_prime_UTR 30.0%
GTGTTCAAAATCAAATTTGG+TGG + chr1_3:51950470-51950489 Msa0124270:three_prime_UTR 30.0%
! TTGGTGTTTAAGAATAAGTG+TGG - chr1_3:51950578-51950597 None:intergenic 30.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_3:51948358-51948377 Msa0124270:exon 35.0%
! GATGTAGACTTTTCTGATGA+AGG - chr1_3:51948469-51948488 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_3:51948749-51948768 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_3:51948748-51948767 Msa0124270:CDS 35.0%
!! AGAATTGCCTGCTTTTATGT+GGG + chr1_3:51949643-51949662 Msa0124270:intron 35.0%
GTATGCAGAGAAAGTTATTC+TGG + chr1_3:51949701-51949720 Msa0124270:intron 35.0%
! TCTGACTCTCTACACATTTT+GGG + chr1_3:51949758-51949777 Msa0124270:CDS 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_3:51949819-51949838 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_3:51949820-51949839 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_3:51949827-51949846 Msa0124270:CDS 35.0%
CATTTCACCGTTTAATGTTC+TGG + chr1_3:51949927-51949946 Msa0124270:intron 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_3:51950007-51950026 Msa0124270:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_3:51950026-51950045 Msa0124270:CDS 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_3:51950093-51950112 None:intergenic 35.0%
TGAAAATAGTGAGCAAAGAC+AGG - chr1_3:51950151-51950170 None:intergenic 35.0%
GTTGAAGTTCTTGTACTCAT+TGG + chr1_3:51950183-51950202 Msa0124270:exon 35.0%
!! ACGTACTAGTTGTTTTCTGA+TGG + chr1_3:51950207-51950226 Msa0124270:three_prime_UTR 35.0%
!! CGTACTAGTTGTTTTCTGAT+GGG + chr1_3:51950208-51950227 Msa0124270:three_prime_UTR 35.0%
!! GTACTAGTTGTTTTCTGATG+GGG + chr1_3:51950209-51950228 Msa0124270:three_prime_UTR 35.0%
!! TACTAGTTGTTTTCTGATGG+GGG + chr1_3:51950210-51950229 Msa0124270:three_prime_UTR 35.0%
!! TTTAGTGGGTTCCACAAATT+TGG + chr1_3:51950546-51950565 Msa0124270:three_prime_UTR 35.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_3:51948358-51948377 Msa0124270:exon 35.0%
! GATGTAGACTTTTCTGATGA+AGG - chr1_3:51948469-51948488 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_3:51948749-51948768 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_3:51948748-51948767 Msa0124270:CDS 35.0%
!! AGAATTGCCTGCTTTTATGT+GGG + chr1_3:51949643-51949662 Msa0124270:intron 35.0%
GTATGCAGAGAAAGTTATTC+TGG + chr1_3:51949701-51949720 Msa0124270:intron 35.0%
! TCTGACTCTCTACACATTTT+GGG + chr1_3:51949758-51949777 Msa0124270:CDS 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_3:51949819-51949838 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_3:51949820-51949839 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_3:51949827-51949846 Msa0124270:CDS 35.0%
CATTTCACCGTTTAATGTTC+TGG + chr1_3:51949927-51949946 Msa0124270:intron 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_3:51950007-51950026 Msa0124270:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_3:51950026-51950045 Msa0124270:CDS 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_3:51950093-51950112 None:intergenic 35.0%
TGAAAATAGTGAGCAAAGAC+AGG - chr1_3:51950151-51950170 None:intergenic 35.0%
GTTGAAGTTCTTGTACTCAT+TGG + chr1_3:51950183-51950202 Msa0124270:exon 35.0%
!! ACGTACTAGTTGTTTTCTGA+TGG + chr1_3:51950207-51950226 Msa0124270:three_prime_UTR 35.0%
!! CGTACTAGTTGTTTTCTGAT+GGG + chr1_3:51950208-51950227 Msa0124270:three_prime_UTR 35.0%
!! GTACTAGTTGTTTTCTGATG+GGG + chr1_3:51950209-51950228 Msa0124270:three_prime_UTR 35.0%
!! TACTAGTTGTTTTCTGATGG+GGG + chr1_3:51950210-51950229 Msa0124270:three_prime_UTR 35.0%
!! TTTAGTGGGTTCCACAAATT+TGG + chr1_3:51950546-51950565 Msa0124270:three_prime_UTR 35.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_3:51948307-51948326 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_3:51948325-51948344 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_3:51948326-51948345 None:intergenic 40.0%
CAGTCGAGAAAAAACTTCAC+CGG + chr1_3:51948334-51948353 Msa0124270:five_prime_UTR 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_3:51948356-51948375 None:intergenic 40.0%
! CTTTTCTGATGAAGGACCAT+CGG - chr1_3:51948461-51948480 None:intergenic 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_3:51948552-51948571 None:intergenic 40.0%
!! CTCTCGCTTTCTTTTGTTGT+TGG + chr1_3:51948779-51948798 Msa0124270:CDS 40.0%
TGTAATCACATGTGCTGTGT+TGG + chr1_3:51949258-51949277 Msa0124270:intron 40.0%
!! TTATTGGAGTTTTGACCTGC+TGG + chr1_3:51949429-51949448 Msa0124270:intron 40.0%
AAAGGAAAGAACTAACCAGC+AGG - chr1_3:51949447-51949466 None:intergenic 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_3:51949465-51949484 None:intergenic 40.0%
!! GAGAATTGCCTGCTTTTATG+TGG + chr1_3:51949642-51949661 Msa0124270:intron 40.0%
GCAAAAACCCACATAAAAGC+AGG - chr1_3:51949653-51949672 None:intergenic 40.0%
ATACAAACCCCATTCCCATT+AGG - chr1_3:51949685-51949704 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_3:51949725-51949744 Msa0124270:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_3:51949728-51949747 Msa0124270:CDS 40.0%
! CTCTGACTCTCTACACATTT+TGG + chr1_3:51949757-51949776 Msa0124270:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_3:51949792-51949811 Msa0124270:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_3:51949818-51949837 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_3:51949845-51949864 Msa0124270:CDS 40.0%
! TCTGCAGATTTTCTTTCCAC+TGG + chr1_3:51949974-51949993 Msa0124270:intron 40.0%
! CTGCAGATTTTCTTTCCACT+GGG + chr1_3:51949975-51949994 Msa0124270:intron 40.0%
! ATTGTAGATAACTTGCCCAG+TGG - chr1_3:51949993-51950012 None:intergenic 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_3:51950109-51950128 Msa0124270:CDS 40.0%
TAGTGAGCAAAGACAGGAAA+AGG - chr1_3:51950145-51950164 None:intergenic 40.0%
!! ACTAGTTGTTTTCTGATGGG+GGG + chr1_3:51950211-51950230 Msa0124270:three_prime_UTR 40.0%
ATAATCCAGTACGAGACACA+GGG - chr1_3:51950297-51950316 None:intergenic 40.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_3:51948307-51948326 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_3:51948325-51948344 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_3:51948326-51948345 None:intergenic 40.0%
CAGTCGAGAAAAAACTTCAC+CGG + chr1_3:51948334-51948353 Msa0124270:five_prime_UTR 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_3:51948356-51948375 None:intergenic 40.0%
! CTTTTCTGATGAAGGACCAT+CGG - chr1_3:51948461-51948480 None:intergenic 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_3:51948552-51948571 None:intergenic 40.0%
!! CTCTCGCTTTCTTTTGTTGT+TGG + chr1_3:51948779-51948798 Msa0124270:CDS 40.0%
TGTAATCACATGTGCTGTGT+TGG + chr1_3:51949258-51949277 Msa0124270:intron 40.0%
!! TTATTGGAGTTTTGACCTGC+TGG + chr1_3:51949429-51949448 Msa0124270:intron 40.0%
AAAGGAAAGAACTAACCAGC+AGG - chr1_3:51949447-51949466 None:intergenic 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_3:51949465-51949484 None:intergenic 40.0%
!! GAGAATTGCCTGCTTTTATG+TGG + chr1_3:51949642-51949661 Msa0124270:intron 40.0%
GCAAAAACCCACATAAAAGC+AGG - chr1_3:51949653-51949672 None:intergenic 40.0%
ATACAAACCCCATTCCCATT+AGG - chr1_3:51949685-51949704 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_3:51949725-51949744 Msa0124270:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_3:51949728-51949747 Msa0124270:CDS 40.0%
! CTCTGACTCTCTACACATTT+TGG + chr1_3:51949757-51949776 Msa0124270:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_3:51949792-51949811 Msa0124270:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_3:51949818-51949837 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_3:51949845-51949864 Msa0124270:CDS 40.0%
! TCTGCAGATTTTCTTTCCAC+TGG + chr1_3:51949974-51949993 Msa0124270:intron 40.0%
! CTGCAGATTTTCTTTCCACT+GGG + chr1_3:51949975-51949994 Msa0124270:intron 40.0%
! ATTGTAGATAACTTGCCCAG+TGG - chr1_3:51949993-51950012 None:intergenic 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_3:51950109-51950128 Msa0124270:CDS 40.0%
TAGTGAGCAAAGACAGGAAA+AGG - chr1_3:51950145-51950164 None:intergenic 40.0%
!! ACTAGTTGTTTTCTGATGGG+GGG + chr1_3:51950211-51950230 Msa0124270:three_prime_UTR 40.0%
ATAATCCAGTACGAGACACA+GGG - chr1_3:51950297-51950316 None:intergenic 40.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_3:51948352-51948371 Msa0124270:exon 45.0%
TGGAATCGGAATCAACCCTA+CGG + chr1_3:51948372-51948391 Msa0124270:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+GGG - chr1_3:51948390-51948409 None:intergenic 45.0%
!!! TTCCACATCGGTTTTTCCGT+AGG - chr1_3:51948391-51948410 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_3:51948393-51948412 Msa0124270:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_3:51948403-51948422 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_3:51948544-51948563 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_3:51948553-51948572 None:intergenic 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_3:51948803-51948822 Msa0124270:CDS 45.0%
! AGTTGTGCTGCTATGAAGCA+CGG + chr1_3:51949154-51949173 Msa0124270:intron 45.0%
! ACATTTTGGGCTGCAAGTAG+AGG + chr1_3:51949771-51949790 Msa0124270:CDS 45.0%
GATAATCCAGTACGAGACAC+AGG - chr1_3:51950298-51950317 None:intergenic 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_3:51950464-51950483 None:intergenic 45.0%
! AGTGGGTTCCACAAATTTGG+TGG + chr1_3:51950549-51950568 Msa0124270:three_prime_UTR 45.0%
GTGGGTTCCACAAATTTGGT+GGG + chr1_3:51950550-51950569 Msa0124270:three_prime_UTR 45.0%
TGTGGAACCCACCAAATTTG+TGG - chr1_3:51950560-51950579 None:intergenic 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_3:51948352-51948371 Msa0124270:exon 45.0%
TGGAATCGGAATCAACCCTA+CGG + chr1_3:51948372-51948391 Msa0124270:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+GGG - chr1_3:51948390-51948409 None:intergenic 45.0%
!!! TTCCACATCGGTTTTTCCGT+AGG - chr1_3:51948391-51948410 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_3:51948393-51948412 Msa0124270:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_3:51948403-51948422 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_3:51948544-51948563 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_3:51948553-51948572 None:intergenic 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_3:51948803-51948822 Msa0124270:CDS 45.0%
! AGTTGTGCTGCTATGAAGCA+CGG + chr1_3:51949154-51949173 Msa0124270:intron 45.0%
! ACATTTTGGGCTGCAAGTAG+AGG + chr1_3:51949771-51949790 Msa0124270:CDS 45.0%
GATAATCCAGTACGAGACAC+AGG - chr1_3:51950298-51950317 None:intergenic 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_3:51950464-51950483 None:intergenic 45.0%
! AGTGGGTTCCACAAATTTGG+TGG + chr1_3:51950549-51950568 Msa0124270:three_prime_UTR 45.0%
GTGGGTTCCACAAATTTGGT+GGG + chr1_3:51950550-51950569 Msa0124270:three_prime_UTR 45.0%
TGTGGAACCCACCAAATTTG+TGG - chr1_3:51950560-51950579 None:intergenic 45.0%
ACCCTACGGAAAAACCGATG+TGG + chr1_3:51948386-51948405 Msa0124270:CDS 50.0%
ATGAAGGACCATCGGAGTTC+GGG - chr1_3:51948453-51948472 None:intergenic 50.0%
GATGAAGGACCATCGGAGTT+CGG - chr1_3:51948454-51948473 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_3:51948555-51948574 Msa0124270:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_3:51948617-51948636 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_3:51948618-51948637 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_3:51948760-51948779 None:intergenic 50.0%
! GTTGTGCTGCTATGAAGCAC+GGG + chr1_3:51949155-51949174 Msa0124270:intron 50.0%
AGGTGGGTGATGTCAAGACA+AGG + chr1_3:51949380-51949399 Msa0124270:intron 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_3:51949807-51949826 Msa0124270:CDS 50.0%
! GTTTTCTGATGGGGGGTTAG+TGG + chr1_3:51950218-51950237 Msa0124270:three_prime_UTR 50.0%
TACGAGACACAGGGACAACA+TGG - chr1_3:51950288-51950307 None:intergenic 50.0%
ACCCTACGGAAAAACCGATG+TGG + chr1_3:51948386-51948405 Msa0124270:CDS 50.0%
ATGAAGGACCATCGGAGTTC+GGG - chr1_3:51948453-51948472 None:intergenic 50.0%
GATGAAGGACCATCGGAGTT+CGG - chr1_3:51948454-51948473 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_3:51948555-51948574 Msa0124270:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_3:51948617-51948636 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_3:51948618-51948637 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_3:51948760-51948779 None:intergenic 50.0%
! GTTGTGCTGCTATGAAGCAC+GGG + chr1_3:51949155-51949174 Msa0124270:intron 50.0%
AGGTGGGTGATGTCAAGACA+AGG + chr1_3:51949380-51949399 Msa0124270:intron 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_3:51949807-51949826 Msa0124270:CDS 50.0%
! GTTTTCTGATGGGGGGTTAG+TGG + chr1_3:51950218-51950237 Msa0124270:three_prime_UTR 50.0%
TACGAGACACAGGGACAACA+TGG - chr1_3:51950288-51950307 None:intergenic 50.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_3:51948415-51948434 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_3:51948426-51948445 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_3:51948435-51948454 None:intergenic 55.0%
TGAAGGACCATCGGAGTTCG+GGG - chr1_3:51948452-51948471 None:intergenic 55.0%
! ATGCCAGTGCCACTGTCGTA+CGG - chr1_3:51949187-51949206 None:intergenic 55.0%
!! TACGACAGTGGCACTGGCAT+TGG + chr1_3:51949187-51949206 Msa0124270:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_3:51949812-51949831 None:intergenic 55.0%
GTTGTCCCTGTGTCTCGTAC+TGG + chr1_3:51950289-51950308 Msa0124270:three_prime_UTR 55.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_3:51948415-51948434 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_3:51948426-51948445 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_3:51948435-51948454 None:intergenic 55.0%
TGAAGGACCATCGGAGTTCG+GGG - chr1_3:51948452-51948471 None:intergenic 55.0%
! ATGCCAGTGCCACTGTCGTA+CGG - chr1_3:51949187-51949206 None:intergenic 55.0%
!! TACGACAGTGGCACTGGCAT+TGG + chr1_3:51949187-51949206 Msa0124270:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_3:51949812-51949831 None:intergenic 55.0%
GTTGTCCCTGTGTCTCGTAC+TGG + chr1_3:51950289-51950308 Msa0124270:three_prime_UTR 55.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_3:51948434-51948453 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_3:51948442-51948461 Msa0124270:CDS 60.0%
CTACTCGCCACCATCGCTGT+CGG + chr1_3:51948504-51948523 Msa0124270:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_3:51948559-51948578 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_3:51948577-51948596 None:intergenic 60.0%
CTGCTATGAAGCACGGGTGC+AGG + chr1_3:51949161-51949180 Msa0124270:intron 60.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_3:51948434-51948453 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_3:51948442-51948461 Msa0124270:CDS 60.0%
CTACTCGCCACCATCGCTGT+CGG + chr1_3:51948504-51948523 Msa0124270:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_3:51948559-51948578 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_3:51948577-51948596 None:intergenic 60.0%
CTGCTATGAAGCACGGGTGC+AGG + chr1_3:51949161-51949180 Msa0124270:intron 60.0%
GGGACGAACGGTGACGACGA+CGG - chr1_3:51948532-51948551 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_3:51948561-51948580 Msa0124270:CDS 65.0%
AGGCCGTACGACAGTGGCAC+TGG + chr1_3:51949181-51949200 Msa0124270:intron 65.0%
GGGACGAACGGTGACGACGA+CGG - chr1_3:51948532-51948551 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_3:51948561-51948580 Msa0124270:CDS 65.0%
AGGCCGTACGACAGTGGCAC+TGG + chr1_3:51949181-51949200 Msa0124270:intron 65.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_3:51948574-51948593 None:intergenic 70.0%
GGGTGCAGGCCGTACGACAG+TGG + chr1_3:51949175-51949194 Msa0124270:intron 70.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_3:51948574-51948593 None:intergenic 70.0%
GGGTGCAGGCCGTACGACAG+TGG + chr1_3:51949175-51949194 Msa0124270:intron 70.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_3:51948514-51948533 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_3:51948517-51948536 None:intergenic 75.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_3:51948514-51948533 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_3:51948517-51948536 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51948237 51950612 51948237 ID=Msa0124270;Name=Msa0124270
chr1_3 mRNA 51948237 51950612 51948237 ID=Msa0124270-mRNA-1;Parent=Msa0124270;Name=Msa0124270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=132|1|1|1|1|1|4|425|244
chr1_3 exon 51948237 51948624 51948237 ID=Msa0124270-mRNA-1:exon:15868;Parent=Msa0124270-mRNA-1
chr1_3 exon 51948711 51948824 51948711 ID=Msa0124270-mRNA-1:exon:15869;Parent=Msa0124270-mRNA-1
chr1_3 exon 51949709 51949866 51949709 ID=Msa0124270-mRNA-1:exon:15870;Parent=Msa0124270-mRNA-1
chr1_3 exon 51949981 51950612 51949981 ID=Msa0124270-mRNA-1:exon:15871;Parent=Msa0124270-mRNA-1
chr1_3 five_prime_UTR 51948237 51948368 51948237 ID=Msa0124270-mRNA-1:five_prime_utr;Parent=Msa0124270-mRNA-1
chr1_3 CDS 51948369 51948624 51948369 ID=Msa0124270-mRNA-1:cds;Parent=Msa0124270-mRNA-1
chr1_3 CDS 51948711 51948824 51948711 ID=Msa0124270-mRNA-1:cds;Parent=Msa0124270-mRNA-1
chr1_3 CDS 51949709 51949866 51949709 ID=Msa0124270-mRNA-1:cds;Parent=Msa0124270-mRNA-1
chr1_3 CDS 51949981 51950187 51949981 ID=Msa0124270-mRNA-1:cds;Parent=Msa0124270-mRNA-1
chr1_3 three_prime_UTR 51950188 51950612 51950188 ID=Msa0124270-mRNA-1:three_prime_utr;Parent=Msa0124270-mRNA-1
Gene Sequence

>Msa0124270

ATGTGGAATCGGAATCAACCCTACGGAAAAACCGATGTGGAAACCGGTTCAAGACCTCTCTACCCGATGATGCTCGAAAGCCCCGAACTCCGATGGTCCTTCATCAGAAAAGTCTACATCATCATCGCTCTTCAACTACTCGCCACCATCGCTGTCGGCGCCGTCGTCGTCACCGTTCGTCCCATTTCCACTTTCTTCGCTACCACCGGCGCTGGTCTCGCTCTTTACATCGTTCTCATCTTCGTCCCTTTCATCACGTTGTGTCCTCTTTACTACTATTATCAGAAGCATCCGATTAATTACCTTCTGCTTGCGGTTTTCACTCTCTCGCTTTCTTTTGTTGTTGGATTGAGCTGTGCTTTCACTAGCGAGAAAGTTATTCTGGAAGCTGTTATATTGACTGCTGTGGTGGTGATAGCTCTGACTCTCTACACATTTTGGGCTGCAAGTAGAGGCTATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTATACTAGTTCTTATGGTCTTTGGGATGATTCAGATTTTCTTTCCACTGGGCAAGTTATCTACAATGATCTATGGTTGCTTGGCAGCAATTATATTCTGTGGCTACATCTTATATGACACAGACAACTTGATCAAGAGATATTCCTATGATGAATTCATTTGGGCTTCTGTCTCCTTATATTTGGACATCATCAACCTTTTCCTGTCTTTGCTCACTATTTTCAGAGCTGCTGATAGTTGA
Protein sequence

>Msa0124270

MWNRNQPYGKTDVETGSRPLYPMMLESPELRWSFIRKVYIIIALQLLATIAVGAVVVTVRPISTFFATTGAGLALYIVLIFVPFITLCPLYYYYQKHPINYLLLAVFTLSLSFVVGLSCAFTSEKVILEAVILTAVVVIALTLYTFWAASRGYDFNFLGPFLFGAILVLMVFGMIQIFFPLGKLSTMIYGCLAAIIFCGYILYDTDNLIKRYSYDEFIWASVSLYLDIINLFLSLLTIFRAADS*