AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076240 MtrunA17_Chr1g0185191 99.590 244 1 0 1 244 1 244 1.20e-176 485
Msa0076240 MtrunA17_Chr7g0260311 76.170 235 56 0 9 243 3 237 1.96e-115 330
Msa0076240 MtrunA17_Chr7g0260221 59.483 232 94 0 8 239 2 233 1.18e-86 257
Msa0076240 MtrunA17_Chr7g0260241 56.034 232 102 0 8 239 2 233 1.67e-84 252
Msa0076240 MtrunA17_Chr7g0260301 57.322 239 96 3 10 242 4 242 4.23e-83 248
Msa0076240 MtrunA17_Chr1g0209611 49.789 237 114 1 9 240 2 238 1.14e-76 231
Msa0076240 MtrunA17_Chr2g0287051 50.855 234 110 3 12 244 28 257 6.60e-74 225
Msa0076240 MtrunA17_Chr7g0260251 53.719 121 42 2 125 243 3 111 3.66e-30 108
Msa0076240 MtrunA17_Chr7g0260271 57.143 91 37 1 130 220 26 114 2.14e-23 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076240 AT1G03070.2 76.518 247 54 1 1 243 1 247 2.03e-137 386
Msa0076240 AT1G03070.3 76.518 247 54 1 1 243 1 247 2.03e-137 386
Msa0076240 AT1G03070.1 76.518 247 54 1 1 243 1 247 2.03e-137 386
Msa0076240 AT3G63310.1 74.590 244 57 1 1 244 1 239 4.81e-129 365
Msa0076240 AT4G02690.1 74.286 245 59 2 1 241 1 245 4.07e-123 350
Msa0076240 AT4G02690.2 62.449 245 50 3 1 241 1 207 2.05e-90 266
Msa0076240 AT4G14730.1 56.957 230 98 1 10 238 3 232 1.16e-89 265
Msa0076240 AT4G15470.1 52.419 248 111 5 1 244 12 256 1.91e-81 244

Find 78 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGACTCTCTACACATTT+TGG 0.130439 1_2:+52200702 Msa0076240:CDS
GGCTTCTGTCTCCTTATATT+TGG 0.136616 1_2:+52201022 Msa0076240:CDS
TCCACATCTTCTTGAGTTTC+CGG 0.192644 1_2:-52199320 None:intergenic
ATACTAGTTCTTATGGTCTT+TGG 0.193055 1_2:+52200779 Msa0076240:CDS
TGGTGCTATACTAGTTCTTA+TGG 0.241827 1_2:+52200772 Msa0076240:CDS
TACTAGTTCTTATGGTCTTT+GGG 0.245956 1_2:+52200780 Msa0076240:CDS
TACGAAAACACGTTCTTATC+TGG 0.259036 1_2:+52201156 Msa0076240:three_prime_UTR
TATGGTCTTTGGGATGATTC+AGG 0.268186 1_2:+52200790 Msa0076240:CDS
TTCCTTGGCCCCTTCTTGTT+TGG 0.270915 1_2:+52200752 Msa0076240:CDS
GTTGATCCTTTCTATTGAAT+TGG 0.291930 1_2:+52201398 Msa0076240:three_prime_UTR
GAGGGAAAATGCGAGAAAAT+TGG 0.304601 1_2:-52199271 None:intergenic
GTATACAGAGAAAGTAATTC+TGG 0.310445 1_2:+52200646 Msa0076240:intron
ATAAAGGACCATCGGAGTTC+GGG 0.315673 1_2:-52199417 None:intergenic
GTTGATGATGTCCAAATATA+AGG 0.321463 1_2:-52201033 None:intergenic
ATTCCTATGATGAATTCATT+TGG 0.330140 1_2:+52201000 Msa0076240:CDS
ATTGCCCCTGCTTCTCGTAC+TGG 0.349232 1_2:+52201202 Msa0076240:three_prime_UTR
TTAATACACATTACTGTAGT+TGG 0.367432 1_2:+52201247 Msa0076240:three_prime_UTR
TTCCTATGATGAATTCATTT+GGG 0.372763 1_2:+52201001 Msa0076240:CDS
TACGAGAAGCAGGGGCAATC+AGG 0.374103 1_2:-52201198 None:intergenic
AAGTTATCTACAATGATCTA+TGG 0.395967 1_2:+52200912 Msa0076240:CDS
CTGGATTATCACTATTGTTA+AGG 0.404952 1_2:+52201221 Msa0076240:three_prime_UTR
GATAAAGGACCATCGGAGTT+CGG 0.409614 1_2:-52199418 None:intergenic
GGCTATGATTTCAACTTCCT+TGG 0.415448 1_2:+52200737 Msa0076240:CDS
TCAAAGCTATTATGATTGCT+AGG 0.431109 1_2:+52201375 Msa0076240:three_prime_UTR
GGTAGCGAAGAAAGTGGAAA+TGG 0.434726 1_2:-52199517 None:intergenic
GTTGAAGTCCTTGTACTCAT+TGG 0.437601 1_2:+52201096 Msa0076240:exon
TGATTTCCAATTCAATAGAA+AGG 0.452966 1_2:-52201404 None:intergenic
TAGTGAGCAAAGACAGGAAA+AGG 0.461448 1_2:-52201055 None:intergenic
TACAATGATCTATGGTTGCT+TGG 0.466219 1_2:+52200920 Msa0076240:CDS
TCGGGGCTTTCGAGCATCAT+CGG 0.470230 1_2:-52199399 None:intergenic
TTCTTCGCTACCACCGGCGC+TGG 0.472313 1_2:+52199528 Msa0076240:CDS
GATAATCCAGTACGAGAAGC+AGG 0.473826 1_2:-52201208 None:intergenic
AACTCAAGAAGATGTGGAAT+CGG 0.480322 1_2:+52199325 Msa0076240:exon
TATCTGGTAATAAATCTTTG+TGG 0.483167 1_2:+52201172 Msa0076240:three_prime_UTR
GCAAGCAGAAGGTAATTAAT+CGG 0.485670 1_2:-52199724 None:intergenic
CGGGGCTTTCGAGCATCATC+GGG 0.487087 1_2:-52199398 None:intergenic
AGCGCAACGCACTGATGAAA+GGG 0.488809 1_2:-52199581 None:intergenic
TCTATTGAATTGGAAATCAA+AGG 0.497996 1_2:+52201408 Msa0076240:three_prime_UTR
AGCCCAAATGAATTCATCAT+AGG 0.498521 1_2:-52201003 None:intergenic
TGAAAATAGTGAGCAAAGAC+AGG 0.506317 1_2:-52201061 None:intergenic
TCAAGTTGTCTGTGTCATAT+AGG 0.508886 1_2:-52200968 None:intergenic
AAGCGCAACGCACTGATGAA+AGG 0.522068 1_2:-52199582 None:intergenic
CGGGTAGAGAGGTCTTGAAC+CGG 0.523484 1_2:-52199379 None:intergenic
CAAAGCTATTATGATTGCTA+GGG 0.528371 1_2:+52201376 Msa0076240:three_prime_UTR
TAGTATAGCACCAAACAAGA+AGG 0.529396 1_2:-52200762 None:intergenic
TCCACTTTCTTCGCTACCAC+CGG 0.539244 1_2:+52199522 Msa0076240:CDS
GAGTGAAAACCGCAAGCAGA+AGG 0.540358 1_2:-52199735 None:intergenic
GATTAATTACCTTCTGCTTG+CGG 0.545443 1_2:+52199726 Msa0076240:CDS
TTCTGATAGTAGTAGTAAAG+AGG 0.547927 1_2:-52199697 None:intergenic
CACCAAACAAGAAGGGGCCA+AGG 0.548467 1_2:-52200754 None:intergenic
TCTTGAACCGGTTTCCACAT+CGG 0.552788 1_2:-52199367 None:intergenic
TGGAATCGGAATCAACCTTA+CGG 0.556296 1_2:+52199339 Msa0076240:CDS
TTGGCAGCAATTATATTCTG+TGG 0.570347 1_2:+52200939 Msa0076240:CDS
GTAGCGAAGAAAGTGGAAAT+GGG 0.571169 1_2:-52199516 None:intergenic
TTGAGCTGTGCTTTCACTAG+CGG 0.574404 1_2:+52199781 Msa0076240:CDS
AGTACGTACCAATGAGTACA+AGG 0.576278 1_2:-52201104 None:intergenic
TGTTATATTGACTGCTGTGG+TGG 0.576783 1_2:+52200673 Msa0076240:CDS
AGTATAGCACCAAACAAGAA+GGG 0.588101 1_2:-52200761 None:intergenic
ACCGGAAACTCAAGAAGATG+TGG 0.593472 1_2:+52199319 Msa0076240:exon
AAACACCGTTCTCTTGAATG+TGG 0.596475 1_2:+52201305 Msa0076240:three_prime_UTR
GACGGCGCCGACAGCGATGG+TGG 0.596967 1_2:-52199478 None:intergenic
ATAATCCAGTACGAGAAGCA+GGG 0.602941 1_2:-52201207 None:intergenic
ATTGTAGATAACTTGCCCAA+TGG 0.603009 1_2:-52200903 None:intergenic
AGCATCCACATTCAAGAGAA+CGG 0.605080 1_2:-52201310 None:intergenic
AAGAGCGAGACCAGCGCCGG+TGG 0.605231 1_2:-52199538 None:intergenic
TCGAAAGCCCCGAACTCCGA+TGG 0.608560 1_2:+52199409 Msa0076240:CDS
TTACTCGCCACCATCGCTGT+CGG 0.610080 1_2:+52199471 Msa0076240:CDS
AGCTGTTATATTGACTGCTG+TGG 0.612381 1_2:+52200670 Msa0076240:CDS
TCGAGCATCATCGGGTAGAG+AGG 0.614144 1_2:-52199390 None:intergenic
GAAAGTGGAAATGGGACGAA+CGG 0.622665 1_2:-52199508 None:intergenic
GGGACGAACGGTGACGACGA+CGG 0.624706 1_2:-52199496 None:intergenic
GACGACGGCGCCGACAGCGA+TGG 0.625482 1_2:-52199481 None:intergenic
TTTCTCGACTGAGAAAGTGA+GGG 0.633090 1_2:-52199289 None:intergenic
GTAAAGAGCGAGACCAGCGC+CGG 0.640236 1_2:-52199541 None:intergenic
GCCGGTGGTAGCGAAGAAAG+TGG 0.667378 1_2:-52199523 None:intergenic
TAATCCAGTACGAGAAGCAG+GGG 0.668100 1_2:-52201206 None:intergenic
GTATAGCACCAAACAAGAAG+GGG 0.669417 1_2:-52200760 None:intergenic
TAAAGGACCATCGGAGTTCG+GGG 0.669815 1_2:-52199416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTGTTTGTTTTTG+CGG - chr1_2:52199192-52199211 None:intergenic 20.0%
!! ATCGAAATTGAAAGAAATTA+GGG - chr1_2:52199615-52199634 None:intergenic 20.0%
!! AATCGAAATTGAAAGAAATT+AGG - chr1_2:52199616-52199635 None:intergenic 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_2:52199940-52199959 Msa0076240:intron 20.0%
!!! CTAACTAGAATTTAACATTT+TGG + chr1_2:52200092-52200111 Msa0076240:intron 20.0%
!!! GATTTGAATTTTTTGTTATC+TGG + chr1_2:52200428-52200447 Msa0076240:intron 20.0%
!!! TTTTACTGATTTTTTCCTAA+TGG + chr1_2:52200611-52200630 Msa0076240:intron 20.0%
!!! TTTACTGATTTTTTCCTAAT+GGG + chr1_2:52200612-52200631 Msa0076240:intron 20.0%
!!! AATGAAATTGTTTGTTTTTG+CGG - chr1_2:52199192-52199211 None:intergenic 20.0%
!! ATCGAAATTGAAAGAAATTA+GGG - chr1_2:52199615-52199634 None:intergenic 20.0%
!! AATCGAAATTGAAAGAAATT+AGG - chr1_2:52199616-52199635 None:intergenic 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_2:52199940-52199959 Msa0076240:intron 20.0%
!!! CTAACTAGAATTTAACATTT+TGG + chr1_2:52200092-52200111 Msa0076240:intron 20.0%
!!! GATTTGAATTTTTTGTTATC+TGG + chr1_2:52200428-52200447 Msa0076240:intron 20.0%
!!! TTTTACTGATTTTTTCCTAA+TGG + chr1_2:52200611-52200630 Msa0076240:intron 20.0%
!!! TTTACTGATTTTTTCCTAAT+GGG + chr1_2:52200612-52200631 Msa0076240:intron 20.0%
!!! ATGAAATTGTTTGTTTTTGC+GGG - chr1_2:52199191-52199210 None:intergenic 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_2:52199259-52199278 None:intergenic 25.0%
! CAATAAAGAAAGAAAGAAAG+CGG - chr1_2:52199829-52199848 None:intergenic 25.0%
!! TTTCTGAATTGTGTGTTATT+TGG + chr1_2:52199895-52199914 Msa0076240:intron 25.0%
!!! TTCTGAATTGTGTGTTATTT+GGG + chr1_2:52199896-52199915 Msa0076240:intron 25.0%
!!! TGTTGTTTAATTTGTCGATT+TGG + chr1_2:52199966-52199985 Msa0076240:intron 25.0%
!! GATTTCTAGGTTGAAATTTA+GGG + chr1_2:52200002-52200021 Msa0076240:intron 25.0%
! TTATTTGTCATTGCAATTAG+AGG + chr1_2:52200027-52200046 Msa0076240:intron 25.0%
! ACAAAGAGAGATATTCATTT+AGG + chr1_2:52200056-52200075 Msa0076240:intron 25.0%
!! TTTGTTATAAATCTTCTCTG+TGG + chr1_2:52200349-52200368 Msa0076240:intron 25.0%
!!! TTTTATTTCAATCGCACAAT+CGG - chr1_2:52200471-52200490 None:intergenic 25.0%
!! CAAATATGTAATTTGCAGTT+AGG + chr1_2:52200505-52200524 Msa0076240:intron 25.0%
! TATTTCACTGTTTAATGTTC+TGG + chr1_2:52200840-52200859 Msa0076240:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_2:52200912-52200931 Msa0076240:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_2:52201000-52201019 Msa0076240:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_2:52201001-52201020 Msa0076240:CDS 25.0%
! TATCTGGTAATAAATCTTTG+TGG + chr1_2:52201172-52201191 Msa0076240:three_prime_UTR 25.0%
! TTAATACACATTACTGTAGT+TGG + chr1_2:52201247-52201266 Msa0076240:three_prime_UTR 25.0%
! TGATTTCCAATTCAATAGAA+AGG - chr1_2:52201407-52201426 None:intergenic 25.0%
! TCTATTGAATTGGAAATCAA+AGG + chr1_2:52201408-52201427 Msa0076240:three_prime_UTR 25.0%
!!! ATGAAATTGTTTGTTTTTGC+GGG - chr1_2:52199191-52199210 None:intergenic 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_2:52199259-52199278 None:intergenic 25.0%
! CAATAAAGAAAGAAAGAAAG+CGG - chr1_2:52199829-52199848 None:intergenic 25.0%
!! TTTCTGAATTGTGTGTTATT+TGG + chr1_2:52199895-52199914 Msa0076240:intron 25.0%
!!! TTCTGAATTGTGTGTTATTT+GGG + chr1_2:52199896-52199915 Msa0076240:intron 25.0%
!!! TGTTGTTTAATTTGTCGATT+TGG + chr1_2:52199966-52199985 Msa0076240:intron 25.0%
!! GATTTCTAGGTTGAAATTTA+GGG + chr1_2:52200002-52200021 Msa0076240:intron 25.0%
! TTATTTGTCATTGCAATTAG+AGG + chr1_2:52200027-52200046 Msa0076240:intron 25.0%
! ACAAAGAGAGATATTCATTT+AGG + chr1_2:52200056-52200075 Msa0076240:intron 25.0%
!! TTTGTTATAAATCTTCTCTG+TGG + chr1_2:52200349-52200368 Msa0076240:intron 25.0%
!!! TTTTATTTCAATCGCACAAT+CGG - chr1_2:52200471-52200490 None:intergenic 25.0%
!! CAAATATGTAATTTGCAGTT+AGG + chr1_2:52200505-52200524 Msa0076240:intron 25.0%
! TATTTCACTGTTTAATGTTC+TGG + chr1_2:52200840-52200859 Msa0076240:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_2:52200912-52200931 Msa0076240:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_2:52201000-52201019 Msa0076240:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_2:52201001-52201020 Msa0076240:CDS 25.0%
! TATCTGGTAATAAATCTTTG+TGG + chr1_2:52201172-52201191 Msa0076240:three_prime_UTR 25.0%
! TTAATACACATTACTGTAGT+TGG + chr1_2:52201247-52201266 Msa0076240:three_prime_UTR 25.0%
! TGATTTCCAATTCAATAGAA+AGG - chr1_2:52201407-52201426 None:intergenic 25.0%
! TCTATTGAATTGGAAATCAA+AGG + chr1_2:52201408-52201427 Msa0076240:three_prime_UTR 25.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_2:52199266-52199285 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_2:52199267-52199286 None:intergenic 30.0%
TTCTGATAGTAGTAGTAAAG+AGG - chr1_2:52199700-52199719 None:intergenic 30.0%
! AACTTTGAGTTTCGATTTCT+AGG + chr1_2:52199989-52200008 Msa0076240:intron 30.0%
! CGATTTCTAGGTTGAAATTT+AGG + chr1_2:52200001-52200020 Msa0076240:intron 30.0%
AGAGATATTCATTTAGGAAC+TGG + chr1_2:52200062-52200081 Msa0076240:intron 30.0%
AACTTCTTCAATTCAACATG+TGG - chr1_2:52200254-52200273 None:intergenic 30.0%
ACATGTTGAATTGAAGAAGT+TGG + chr1_2:52200253-52200272 Msa0076240:intron 30.0%
ACCAAATGTGGTAATTGATT+AGG + chr1_2:52200303-52200322 Msa0076240:intron 30.0%
ACCTAATCAATTACCACATT+TGG - chr1_2:52200307-52200326 None:intergenic 30.0%
AAATGTGGTAATTGATTAGG+TGG + chr1_2:52200306-52200325 Msa0076240:intron 30.0%
AATGTGGTAATTGATTAGGT+GGG + chr1_2:52200307-52200326 Msa0076240:intron 30.0%
AAAGGAAAGAACTAACCAAT+AGG - chr1_2:52200390-52200409 None:intergenic 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_2:52200399-52200418 Msa0076240:intron 30.0%
!! AGAATTGCCTACTTTTATCT+GGG + chr1_2:52200587-52200606 Msa0076240:intron 30.0%
GTAAAATCCCAGATAAAAGT+AGG - chr1_2:52200597-52200616 None:intergenic 30.0%
!!! TGATTTTTTCCTAATGGGAA+TGG + chr1_2:52200617-52200636 Msa0076240:intron 30.0%
!!! GATTTTTTCCTAATGGGAAT+GGG + chr1_2:52200618-52200637 Msa0076240:intron 30.0%
!!! ATTTTTTCCTAATGGGAATG+GGG + chr1_2:52200619-52200638 Msa0076240:intron 30.0%
GTATACAGAGAAAGTAATTC+TGG + chr1_2:52200646-52200665 Msa0076240:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_2:52200779-52200798 Msa0076240:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_2:52200780-52200799 Msa0076240:CDS 30.0%
! TTGCAGATTTTCTTTCCATT+GGG + chr1_2:52200888-52200907 Msa0076240:intron 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_2:52201036-52201055 None:intergenic 30.0%
!! TACTAGTTGTTTTCTGATGT+TGG + chr1_2:52201123-52201142 Msa0076240:three_prime_UTR 30.0%
!! ACTAGTTGTTTTCTGATGTT+GGG + chr1_2:52201124-52201143 Msa0076240:three_prime_UTR 30.0%
CTGGATTATCACTATTGTTA+AGG + chr1_2:52201221-52201240 Msa0076240:three_prime_UTR 30.0%
!!! TAGCTTTGATTTTGAACACT+CGG - chr1_2:52201364-52201383 None:intergenic 30.0%
TCAAAGCTATTATGATTGCT+AGG + chr1_2:52201375-52201394 Msa0076240:three_prime_UTR 30.0%
CAAAGCTATTATGATTGCTA+GGG + chr1_2:52201376-52201395 Msa0076240:three_prime_UTR 30.0%
GTTGATCCTTTCTATTGAAT+TGG + chr1_2:52201398-52201417 Msa0076240:three_prime_UTR 30.0%
!!! TGAAATTGTTTGTTTTTGCG+GGG - chr1_2:52199190-52199209 None:intergenic 30.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_2:52199266-52199285 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_2:52199267-52199286 None:intergenic 30.0%
TTCTGATAGTAGTAGTAAAG+AGG - chr1_2:52199700-52199719 None:intergenic 30.0%
! AACTTTGAGTTTCGATTTCT+AGG + chr1_2:52199989-52200008 Msa0076240:intron 30.0%
! CGATTTCTAGGTTGAAATTT+AGG + chr1_2:52200001-52200020 Msa0076240:intron 30.0%
AGAGATATTCATTTAGGAAC+TGG + chr1_2:52200062-52200081 Msa0076240:intron 30.0%
AACTTCTTCAATTCAACATG+TGG - chr1_2:52200254-52200273 None:intergenic 30.0%
ACATGTTGAATTGAAGAAGT+TGG + chr1_2:52200253-52200272 Msa0076240:intron 30.0%
ACCAAATGTGGTAATTGATT+AGG + chr1_2:52200303-52200322 Msa0076240:intron 30.0%
ACCTAATCAATTACCACATT+TGG - chr1_2:52200307-52200326 None:intergenic 30.0%
AAATGTGGTAATTGATTAGG+TGG + chr1_2:52200306-52200325 Msa0076240:intron 30.0%
AATGTGGTAATTGATTAGGT+GGG + chr1_2:52200307-52200326 Msa0076240:intron 30.0%
AAAGGAAAGAACTAACCAAT+AGG - chr1_2:52200390-52200409 None:intergenic 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_2:52200399-52200418 Msa0076240:intron 30.0%
!! AGAATTGCCTACTTTTATCT+GGG + chr1_2:52200587-52200606 Msa0076240:intron 30.0%
GTAAAATCCCAGATAAAAGT+AGG - chr1_2:52200597-52200616 None:intergenic 30.0%
!!! TGATTTTTTCCTAATGGGAA+TGG + chr1_2:52200617-52200636 Msa0076240:intron 30.0%
!!! GATTTTTTCCTAATGGGAAT+GGG + chr1_2:52200618-52200637 Msa0076240:intron 30.0%
!!! ATTTTTTCCTAATGGGAATG+GGG + chr1_2:52200619-52200638 Msa0076240:intron 30.0%
GTATACAGAGAAAGTAATTC+TGG + chr1_2:52200646-52200665 Msa0076240:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_2:52200779-52200798 Msa0076240:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_2:52200780-52200799 Msa0076240:CDS 30.0%
! TTGCAGATTTTCTTTCCATT+GGG + chr1_2:52200888-52200907 Msa0076240:intron 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_2:52201036-52201055 None:intergenic 30.0%
!! TACTAGTTGTTTTCTGATGT+TGG + chr1_2:52201123-52201142 Msa0076240:three_prime_UTR 30.0%
!! ACTAGTTGTTTTCTGATGTT+GGG + chr1_2:52201124-52201143 Msa0076240:three_prime_UTR 30.0%
CTGGATTATCACTATTGTTA+AGG + chr1_2:52201221-52201240 Msa0076240:three_prime_UTR 30.0%
!!! TAGCTTTGATTTTGAACACT+CGG - chr1_2:52201364-52201383 None:intergenic 30.0%
TCAAAGCTATTATGATTGCT+AGG + chr1_2:52201375-52201394 Msa0076240:three_prime_UTR 30.0%
CAAAGCTATTATGATTGCTA+GGG + chr1_2:52201376-52201395 Msa0076240:three_prime_UTR 30.0%
GTTGATCCTTTCTATTGAAT+TGG + chr1_2:52201398-52201417 Msa0076240:three_prime_UTR 30.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_2:52199325-52199344 Msa0076240:exon 35.0%
! CTTTTCTGATAAAGGACCAT+CGG - chr1_2:52199428-52199447 None:intergenic 35.0%
! GACGTAGACTTTTCTGATAA+AGG - chr1_2:52199436-52199455 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_2:52199727-52199746 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_2:52199726-52199745 Msa0076240:CDS 35.0%
AGAAAGAAAGAAAGCGGAAA+TGG - chr1_2:52199823-52199842 None:intergenic 35.0%
!! GTGTGTTATTTGGGATTGAT+TGG + chr1_2:52199905-52199924 Msa0076240:intron 35.0%
TTGTGTTCGAATACCAAATG+TGG + chr1_2:52200291-52200310 Msa0076240:intron 35.0%
TAAATCTTCTCTGTGGTTAG+TGG + chr1_2:52200356-52200375 Msa0076240:intron 35.0%
!! TTAGTGGAGTTTTGACCTAT+TGG + chr1_2:52200372-52200391 Msa0076240:intron 35.0%
!!! TAGGAGTTACCTTGCTATTT+TGG + chr1_2:52200524-52200543 Msa0076240:intron 35.0%
TTACACAAGCCAAAATAGCA+AGG - chr1_2:52200536-52200555 None:intergenic 35.0%
!! GAGAATTGCCTACTTTTATC+TGG + chr1_2:52200586-52200605 Msa0076240:intron 35.0%
! TCTGACTCTCTACACATTTT+GGG + chr1_2:52200703-52200722 Msa0076240:CDS 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_2:52200764-52200783 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_2:52200765-52200784 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_2:52200772-52200791 Msa0076240:CDS 35.0%
! CTTGCAGATTTTCTTTCCAT+TGG + chr1_2:52200887-52200906 Msa0076240:intron 35.0%
! ATTGTAGATAACTTGCCCAA+TGG - chr1_2:52200906-52200925 None:intergenic 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_2:52200920-52200939 Msa0076240:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_2:52200939-52200958 Msa0076240:CDS 35.0%
! TCAAGTTGTCTGTGTCATAT+AGG - chr1_2:52200971-52200990 None:intergenic 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_2:52201006-52201025 None:intergenic 35.0%
TGAAAATAGTGAGCAAAGAC+AGG - chr1_2:52201064-52201083 None:intergenic 35.0%
TACGAAAACACGTTCTTATC+TGG + chr1_2:52201156-52201175 Msa0076240:three_prime_UTR 35.0%
!! AGCTTTGATTTTGAACACTC+GGG - chr1_2:52201363-52201382 None:intergenic 35.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_2:52199325-52199344 Msa0076240:exon 35.0%
! CTTTTCTGATAAAGGACCAT+CGG - chr1_2:52199428-52199447 None:intergenic 35.0%
! GACGTAGACTTTTCTGATAA+AGG - chr1_2:52199436-52199455 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_2:52199727-52199746 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_2:52199726-52199745 Msa0076240:CDS 35.0%
AGAAAGAAAGAAAGCGGAAA+TGG - chr1_2:52199823-52199842 None:intergenic 35.0%
!! GTGTGTTATTTGGGATTGAT+TGG + chr1_2:52199905-52199924 Msa0076240:intron 35.0%
TTGTGTTCGAATACCAAATG+TGG + chr1_2:52200291-52200310 Msa0076240:intron 35.0%
TAAATCTTCTCTGTGGTTAG+TGG + chr1_2:52200356-52200375 Msa0076240:intron 35.0%
!! TTAGTGGAGTTTTGACCTAT+TGG + chr1_2:52200372-52200391 Msa0076240:intron 35.0%
!!! TAGGAGTTACCTTGCTATTT+TGG + chr1_2:52200524-52200543 Msa0076240:intron 35.0%
TTACACAAGCCAAAATAGCA+AGG - chr1_2:52200536-52200555 None:intergenic 35.0%
!! GAGAATTGCCTACTTTTATC+TGG + chr1_2:52200586-52200605 Msa0076240:intron 35.0%
! TCTGACTCTCTACACATTTT+GGG + chr1_2:52200703-52200722 Msa0076240:CDS 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_2:52200764-52200783 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_2:52200765-52200784 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_2:52200772-52200791 Msa0076240:CDS 35.0%
! CTTGCAGATTTTCTTTCCAT+TGG + chr1_2:52200887-52200906 Msa0076240:intron 35.0%
! ATTGTAGATAACTTGCCCAA+TGG - chr1_2:52200906-52200925 None:intergenic 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_2:52200920-52200939 Msa0076240:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_2:52200939-52200958 Msa0076240:CDS 35.0%
! TCAAGTTGTCTGTGTCATAT+AGG - chr1_2:52200971-52200990 None:intergenic 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_2:52201006-52201025 None:intergenic 35.0%
TGAAAATAGTGAGCAAAGAC+AGG - chr1_2:52201064-52201083 None:intergenic 35.0%
TACGAAAACACGTTCTTATC+TGG + chr1_2:52201156-52201175 Msa0076240:three_prime_UTR 35.0%
!! AGCTTTGATTTTGAACACTC+GGG - chr1_2:52201363-52201382 None:intergenic 35.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_2:52199274-52199293 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_2:52199292-52199311 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_2:52199293-52199312 None:intergenic 40.0%
CAGTCGAGAAAAAACTTCAC+CGG + chr1_2:52199301-52199320 Msa0076240:five_prime_UTR 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_2:52199323-52199342 None:intergenic 40.0%
TGGAATCGGAATCAACCTTA+CGG + chr1_2:52199339-52199358 Msa0076240:CDS 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_2:52199519-52199538 None:intergenic 40.0%
!! CTCTCGCTTTCTTTTGTTGT+TGG + chr1_2:52199757-52199776 Msa0076240:CDS 40.0%
TAATCACATGTGCTATGTGC+TGG + chr1_2:52200223-52200242 Msa0076240:intron 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_2:52200408-52200427 None:intergenic 40.0%
TACAAAACCCCATTCCCATT+AGG - chr1_2:52200629-52200648 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_2:52200670-52200689 Msa0076240:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_2:52200673-52200692 Msa0076240:CDS 40.0%
! CTCTGACTCTCTACACATTT+TGG + chr1_2:52200702-52200721 Msa0076240:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_2:52200737-52200756 Msa0076240:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_2:52200763-52200782 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_2:52200790-52200809 Msa0076240:CDS 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_2:52201022-52201041 Msa0076240:CDS 40.0%
TAGTGAGCAAAGACAGGAAA+AGG - chr1_2:52201058-52201077 None:intergenic 40.0%
GTTGAAGTCCTTGTACTCAT+TGG + chr1_2:52201096-52201115 Msa0076240:exon 40.0%
AGTACGTACCAATGAGTACA+AGG - chr1_2:52201107-52201126 None:intergenic 40.0%
!! GTTTTCTGATGTTGGGTTAG+TGG + chr1_2:52201131-52201150 Msa0076240:three_prime_UTR 40.0%
ATAATCCAGTACGAGAAGCA+GGG - chr1_2:52201210-52201229 None:intergenic 40.0%
AAACACCGTTCTCTTGAATG+TGG + chr1_2:52201305-52201324 Msa0076240:three_prime_UTR 40.0%
AGCATCCACATTCAAGAGAA+CGG - chr1_2:52201313-52201332 None:intergenic 40.0%
!! GCTTTGATTTTGAACACTCG+GGG - chr1_2:52201362-52201381 None:intergenic 40.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_2:52199274-52199293 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_2:52199292-52199311 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_2:52199293-52199312 None:intergenic 40.0%
CAGTCGAGAAAAAACTTCAC+CGG + chr1_2:52199301-52199320 Msa0076240:five_prime_UTR 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_2:52199323-52199342 None:intergenic 40.0%
TGGAATCGGAATCAACCTTA+CGG + chr1_2:52199339-52199358 Msa0076240:CDS 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_2:52199519-52199538 None:intergenic 40.0%
!! CTCTCGCTTTCTTTTGTTGT+TGG + chr1_2:52199757-52199776 Msa0076240:CDS 40.0%
TAATCACATGTGCTATGTGC+TGG + chr1_2:52200223-52200242 Msa0076240:intron 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_2:52200408-52200427 None:intergenic 40.0%
TACAAAACCCCATTCCCATT+AGG - chr1_2:52200629-52200648 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_2:52200670-52200689 Msa0076240:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_2:52200673-52200692 Msa0076240:CDS 40.0%
! CTCTGACTCTCTACACATTT+TGG + chr1_2:52200702-52200721 Msa0076240:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_2:52200737-52200756 Msa0076240:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_2:52200763-52200782 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_2:52200790-52200809 Msa0076240:CDS 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_2:52201022-52201041 Msa0076240:CDS 40.0%
TAGTGAGCAAAGACAGGAAA+AGG - chr1_2:52201058-52201077 None:intergenic 40.0%
GTTGAAGTCCTTGTACTCAT+TGG + chr1_2:52201096-52201115 Msa0076240:exon 40.0%
AGTACGTACCAATGAGTACA+AGG - chr1_2:52201107-52201126 None:intergenic 40.0%
!! GTTTTCTGATGTTGGGTTAG+TGG + chr1_2:52201131-52201150 Msa0076240:three_prime_UTR 40.0%
ATAATCCAGTACGAGAAGCA+GGG - chr1_2:52201210-52201229 None:intergenic 40.0%
AAACACCGTTCTCTTGAATG+TGG + chr1_2:52201305-52201324 Msa0076240:three_prime_UTR 40.0%
AGCATCCACATTCAAGAGAA+CGG - chr1_2:52201313-52201332 None:intergenic 40.0%
!! GCTTTGATTTTGAACACTCG+GGG - chr1_2:52201362-52201381 None:intergenic 40.0%
!! CTTTTGTTTGCTTGCGTGAG+AGG - chr1_2:52199231-52199250 None:intergenic 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_2:52199319-52199338 Msa0076240:exon 45.0%
ACCTTACGGAAAAACCGATG+TGG + chr1_2:52199353-52199372 Msa0076240:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+AGG - chr1_2:52199357-52199376 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_2:52199360-52199379 Msa0076240:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_2:52199370-52199389 None:intergenic 45.0%
ATAAAGGACCATCGGAGTTC+GGG - chr1_2:52199420-52199439 None:intergenic 45.0%
GATAAAGGACCATCGGAGTT+CGG - chr1_2:52199421-52199440 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_2:52199511-52199530 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_2:52199520-52199539 None:intergenic 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_2:52199781-52199800 Msa0076240:CDS 45.0%
AGGTGGGTGATGTTAAGACA+AGG + chr1_2:52200323-52200342 Msa0076240:intron 45.0%
! ACATTTTGGGCTGCAAGTAG+AGG + chr1_2:52200716-52200735 Msa0076240:CDS 45.0%
TAATCCAGTACGAGAAGCAG+GGG - chr1_2:52201209-52201228 None:intergenic 45.0%
GATAATCCAGTACGAGAAGC+AGG - chr1_2:52201211-52201230 None:intergenic 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_2:52201359-52201378 None:intergenic 45.0%
!! CTTTTGTTTGCTTGCGTGAG+AGG - chr1_2:52199231-52199250 None:intergenic 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_2:52199319-52199338 Msa0076240:exon 45.0%
ACCTTACGGAAAAACCGATG+TGG + chr1_2:52199353-52199372 Msa0076240:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+AGG - chr1_2:52199357-52199376 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_2:52199360-52199379 Msa0076240:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_2:52199370-52199389 None:intergenic 45.0%
ATAAAGGACCATCGGAGTTC+GGG - chr1_2:52199420-52199439 None:intergenic 45.0%
GATAAAGGACCATCGGAGTT+CGG - chr1_2:52199421-52199440 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_2:52199511-52199530 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_2:52199520-52199539 None:intergenic 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_2:52199781-52199800 Msa0076240:CDS 45.0%
AGGTGGGTGATGTTAAGACA+AGG + chr1_2:52200323-52200342 Msa0076240:intron 45.0%
! ACATTTTGGGCTGCAAGTAG+AGG + chr1_2:52200716-52200735 Msa0076240:CDS 45.0%
TAATCCAGTACGAGAAGCAG+GGG - chr1_2:52201209-52201228 None:intergenic 45.0%
GATAATCCAGTACGAGAAGC+AGG - chr1_2:52201211-52201230 None:intergenic 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_2:52201359-52201378 None:intergenic 45.0%
!!! ATATTTTAAAAAAATAGAAA+TGG - chr1_2:52201460-52201479 None:intergenic 5.0%
!!! ATTTCTATTTTTTTAAAATA+TGG + chr1_2:52201459-52201478 Msa0076240:three_prime_UTR 5.0%
!!! TTTCTATTTTTTTAAAATAT+GGG + chr1_2:52201460-52201479 Msa0076240:three_prime_UTR 5.0%
!!! ATATTTTAAAAAAATAGAAA+TGG - chr1_2:52201460-52201479 None:intergenic 5.0%
!!! ATTTCTATTTTTTTAAAATA+TGG + chr1_2:52201459-52201478 Msa0076240:three_prime_UTR 5.0%
!!! TTTCTATTTTTTTAAAATAT+GGG + chr1_2:52201460-52201479 Msa0076240:three_prime_UTR 5.0%
TAAAGGACCATCGGAGTTCG+GGG - chr1_2:52199419-52199438 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_2:52199522-52199541 Msa0076240:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_2:52199584-52199603 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_2:52199585-52199604 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_2:52199738-52199757 None:intergenic 50.0%
! AGTTGTGCTGCTATGCAGCA+CGG + chr1_2:52200126-52200145 Msa0076240:intron 50.0%
! GTGGCATTGAGACTGACACA+TGG + chr1_2:52200157-52200176 Msa0076240:intron 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_2:52200752-52200771 Msa0076240:CDS 50.0%
TAAAGGACCATCGGAGTTCG+GGG - chr1_2:52199419-52199438 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_2:52199522-52199541 Msa0076240:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_2:52199584-52199603 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_2:52199585-52199604 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_2:52199738-52199757 None:intergenic 50.0%
! AGTTGTGCTGCTATGCAGCA+CGG + chr1_2:52200126-52200145 Msa0076240:intron 50.0%
! GTGGCATTGAGACTGACACA+TGG + chr1_2:52200157-52200176 Msa0076240:intron 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_2:52200752-52200771 Msa0076240:CDS 50.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_2:52199382-52199401 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_2:52199393-52199412 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_2:52199402-52199421 None:intergenic 55.0%
TTACTCGCCACCATCGCTGT+CGG + chr1_2:52199471-52199490 Msa0076240:CDS 55.0%
GCTGCTATGCAGCACGGATA+CGG + chr1_2:52200132-52200151 Msa0076240:intron 55.0%
ATGCAGCACGGATACGGTAG+TGG + chr1_2:52200138-52200157 Msa0076240:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_2:52200757-52200776 None:intergenic 55.0%
TACGAGAAGCAGGGGCAATC+AGG - chr1_2:52201201-52201220 None:intergenic 55.0%
ATTGCCCCTGCTTCTCGTAC+TGG + chr1_2:52201202-52201221 Msa0076240:three_prime_UTR 55.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_2:52199382-52199401 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_2:52199393-52199412 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_2:52199402-52199421 None:intergenic 55.0%
TTACTCGCCACCATCGCTGT+CGG + chr1_2:52199471-52199490 Msa0076240:CDS 55.0%
GCTGCTATGCAGCACGGATA+CGG + chr1_2:52200132-52200151 Msa0076240:intron 55.0%
ATGCAGCACGGATACGGTAG+TGG + chr1_2:52200138-52200157 Msa0076240:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_2:52200757-52200776 None:intergenic 55.0%
TACGAGAAGCAGGGGCAATC+AGG - chr1_2:52201201-52201220 None:intergenic 55.0%
ATTGCCCCTGCTTCTCGTAC+TGG + chr1_2:52201202-52201221 Msa0076240:three_prime_UTR 55.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_2:52199401-52199420 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_2:52199409-52199428 Msa0076240:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_2:52199526-52199545 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_2:52199544-52199563 None:intergenic 60.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_2:52199401-52199420 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_2:52199409-52199428 Msa0076240:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_2:52199526-52199545 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_2:52199544-52199563 None:intergenic 60.0%
GGGACGAACGGTGACGACGA+CGG - chr1_2:52199499-52199518 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_2:52199528-52199547 Msa0076240:CDS 65.0%
GGGACGAACGGTGACGACGA+CGG - chr1_2:52199499-52199518 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_2:52199528-52199547 Msa0076240:CDS 65.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_2:52199541-52199560 None:intergenic 70.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_2:52199541-52199560 None:intergenic 70.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_2:52199481-52199500 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_2:52199484-52199503 None:intergenic 75.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_2:52199481-52199500 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_2:52199484-52199503 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52199188 52201492 52199188 ID=Msa0076240;Name=Msa0076240
chr1_2 mRNA 52199188 52201492 52199188 ID=Msa0076240-mRNA-1;Parent=Msa0076240;Name=Msa0076240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=148|1|1|1|1|1|4|392|244
chr1_2 exon 52199188 52199591 52199188 ID=Msa0076240-mRNA-1:exon:16093;Parent=Msa0076240-mRNA-1
chr1_2 exon 52199689 52199802 52199689 ID=Msa0076240-mRNA-1:exon:16094;Parent=Msa0076240-mRNA-1
chr1_2 exon 52200654 52200811 52200654 ID=Msa0076240-mRNA-1:exon:16095;Parent=Msa0076240-mRNA-1
chr1_2 exon 52200894 52201492 52200894 ID=Msa0076240-mRNA-1:exon:16096;Parent=Msa0076240-mRNA-1
chr1_2 five_prime_UTR 52199188 52199335 52199188 ID=Msa0076240-mRNA-1:five_prime_utr;Parent=Msa0076240-mRNA-1
chr1_2 CDS 52199336 52199591 52199336 ID=Msa0076240-mRNA-1:cds;Parent=Msa0076240-mRNA-1
chr1_2 CDS 52199689 52199802 52199689 ID=Msa0076240-mRNA-1:cds;Parent=Msa0076240-mRNA-1
chr1_2 CDS 52200654 52200811 52200654 ID=Msa0076240-mRNA-1:cds;Parent=Msa0076240-mRNA-1
chr1_2 CDS 52200894 52201100 52200894 ID=Msa0076240-mRNA-1:cds;Parent=Msa0076240-mRNA-1
chr1_2 three_prime_UTR 52201101 52201492 52201101 ID=Msa0076240-mRNA-1:three_prime_utr;Parent=Msa0076240-mRNA-1
Gene Sequence

>Msa0076240

ATGTGGAATCGGAATCAACCTTACGGAAAAACCGATGTGGAAACCGGTTCAAGACCTCTCTACCCGATGATGCTCGAAAGCCCCGAACTCCGATGGTCCTTTATCAGAAAAGTCTACGTCATCATCGCTCTTCAATTACTCGCCACCATCGCTGTCGGCGCCGTCGTCGTCACCGTTCGTCCCATTTCCACTTTCTTCGCTACCACCGGCGCTGGTCTCGCTCTTTACATCGTTCTCATCTTCGTCCCTTTCATCACGTTGTGTCCTCTTTACTACTACTATCAGAAGCATCCGATTAATTACCTTCTGCTTGCGGTTTTCACTCTCTCGCTTTCTTTTGTTGTTGGATTGAGCTGTGCTTTCACTAGCGAGAAAGTAATTCTGGAAGCTGTTATATTGACTGCTGTGGTGGTGATAGCTCTGACTCTCTACACATTTTGGGCTGCAAGTAGAGGCTATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTATACTAGTTCTTATGGTCTTTGGGATGATTCAGATTTTCTTTCCATTGGGCAAGTTATCTACAATGATCTATGGTTGCTTGGCAGCAATTATATTCTGTGGCTACATCCTATATGACACAGACAACTTGATCAAGAGATATTCCTATGATGAATTCATTTGGGCTTCTGTCTCCTTATATTTGGACATCATCAACCTTTTCCTGTCTTTGCTCACTATTTTCAGAGCTGCTGATAGTTGA
Protein sequence

>Msa0076240

MWNRNQPYGKTDVETGSRPLYPMMLESPELRWSFIRKVYVIIALQLLATIAVGAVVVTVRPISTFFATTGAGLALYIVLIFVPFITLCPLYYYYQKHPINYLLLAVFTLSLSFVVGLSCAFTSEKVILEAVILTAVVVIALTLYTFWAASRGYDFNFLGPFLFGAILVLMVFGMIQIFFPLGKLSTMIYGCLAAIIFCGYILYDTDNLIKRYSYDEFIWASVSLYLDIINLFLSLLTIFRAADS*