Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124400 | XP_003590616.1 | 94.561 | 239 | 11 | 1 | 1 | 239 | 1 | 237 | 9.82e-165 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124400 | sp|Q8LGS1|MARD1_ARATH | 40.449 | 267 | 124 | 11 | 2 | 238 | 1 | 262 | 1.61e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124400 | G7IDN1 | 94.561 | 239 | 11 | 1 | 1 | 239 | 1 | 237 | 4.69e-165 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076400 | Msa0124400 | 0.816583 | 5.130558e-52 | -8.615850e-47 |
| Msa0124400 | Msa0127200 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124400 | MtrunA17_Chr1g0185331 | 94.561 | 239 | 11 | 1 | 1 | 239 | 1 | 237 | 9.03e-169 | 464 |
| Msa0124400 | MtrunA17_Chr7g0260011 | 56.757 | 259 | 89 | 8 | 1 | 238 | 1 | 257 | 7.76e-83 | 248 |
| Msa0124400 | MtrunA17_Chr1g0205211 | 53.704 | 108 | 36 | 2 | 143 | 237 | 180 | 286 | 7.88e-30 | 112 |
| Msa0124400 | MtrunA17_Chr1g0205211 | 44.444 | 117 | 49 | 7 | 30 | 138 | 12 | 120 | 9.07e-15 | 72.0 |
| Msa0124400 | MtrunA17_Chr3g0138651 | 47.826 | 115 | 36 | 3 | 146 | 236 | 280 | 394 | 6.91e-24 | 99.0 |
| Msa0124400 | MtrunA17_Chr1g0148411 | 48.214 | 112 | 37 | 3 | 146 | 236 | 204 | 315 | 1.91e-23 | 96.7 |
| Msa0124400 | MtrunA17_Chr2g0331941 | 47.321 | 112 | 48 | 4 | 127 | 228 | 240 | 350 | 2.59e-20 | 88.6 |
| Msa0124400 | MtrunA17_Chr2g0301141 | 59.091 | 44 | 17 | 1 | 193 | 236 | 183 | 225 | 9.29e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124400 | AT3G63210.1 | 40.449 | 267 | 124 | 11 | 2 | 238 | 1 | 262 | 1.64e-48 | 160 |
| Msa0124400 | AT3G22550.1 | 37.319 | 276 | 118 | 10 | 2 | 236 | 1 | 262 | 1.99e-43 | 147 |
| Msa0124400 | AT5G11460.1 | 27.341 | 267 | 105 | 8 | 52 | 232 | 44 | 307 | 7.81e-22 | 92.8 |
| Msa0124400 | AT2G25690.2 | 44.330 | 97 | 35 | 3 | 155 | 238 | 218 | 308 | 3.86e-17 | 79.3 |
| Msa0124400 | AT2G25690.1 | 44.330 | 97 | 35 | 3 | 155 | 238 | 218 | 308 | 3.86e-17 | 79.3 |
| Msa0124400 | AT5G20700.1 | 32.227 | 211 | 93 | 11 | 54 | 236 | 33 | 221 | 9.71e-12 | 63.5 |
Find 35 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCACTTGAGGAGTTTA+AGG | 0.190065 | 1_3:-52180174 | None:intergenic |
| ACTACAATACCATCTCTATT+TGG | 0.228214 | 1_3:+52180328 | Msa0124400:CDS |
| CAAAAGACATCTTCATTTAC+AGG | 0.305275 | 1_3:+52180881 | Msa0124400:CDS |
| GCTACAAACTTTGTTCCTAT+TGG | 0.308716 | 1_3:-52180479 | None:intergenic |
| CACACAAATAGAACTTAAAA+AGG | 0.313516 | 1_3:-52181114 | None:intergenic |
| GGTCTTGGTCTTGGTCTTGT+TGG | 0.321698 | 1_3:+52180532 | Msa0124400:CDS |
| TTCACCCATCAAACTTTGTT+TGG | 0.353951 | 1_3:-52180284 | None:intergenic |
| AAAACCATTGGTCTTGGTCT+TGG | 0.366469 | 1_3:+52180523 | Msa0124400:CDS |
| AGCAATAGAAAAGTTCTGTT+TGG | 0.378889 | 1_3:+52180601 | Msa0124400:CDS |
| AAATGAAAATCTCTATAGTT+TGG | 0.385441 | 1_3:-52180355 | None:intergenic |
| ATATGACTGAATAATATATA+TGG | 0.390307 | 1_3:-52179950 | None:intergenic |
| TTCCTATTGGTAATTGAGAA+AGG | 0.411279 | 1_3:-52180466 | None:intergenic |
| ATCTCTATTTGCAAGGTTGA+AGG | 0.413036 | 1_3:-52181146 | None:intergenic |
| ACCCTTTCTCAATTACCAAT+AGG | 0.433358 | 1_3:+52180464 | Msa0124400:CDS |
| AATTCAGTACACTTTCACTT+AGG | 0.454438 | 1_3:+52180142 | Msa0124400:five_prime_UTR |
| TGTTCTTAGTTTGAGTGAGA+TGG | 0.477236 | 1_3:+52180684 | Msa0124400:CDS |
| AGTCACCAAACAAAGTTTGA+TGG | 0.487954 | 1_3:+52180279 | Msa0124400:CDS |
| TCCTATTGGTAATTGAGAAA+GGG | 0.489680 | 1_3:-52180465 | None:intergenic |
| ATTGAAAAGTGTTTCACTTG+AGG | 0.491387 | 1_3:-52180183 | None:intergenic |
| AAAGTGTACTGAATTGTGTT+TGG | 0.502524 | 1_3:-52180134 | None:intergenic |
| TCAAACATGGAAGGTGGTAG+AGG | 0.507899 | 1_3:-52180649 | None:intergenic |
| GGAACAAAGTTTGTAGCTCA+AGG | 0.520520 | 1_3:+52180485 | Msa0124400:CDS |
| TACACATGTGTGATATCTCA+TGG | 0.544339 | 1_3:+52180721 | Msa0124400:CDS |
| CTTGCAAATAGAGATAAAAG+AGG | 0.555159 | 1_3:+52181154 | Msa0124400:three_prime_UTR |
| GTCACCAAACAAAGTTTGAT+GGG | 0.561348 | 1_3:+52180280 | Msa0124400:CDS |
| ACATGGAAGGTGGTAGAGGA+GGG | 0.569491 | 1_3:-52180645 | None:intergenic |
| TTTGTGTCAAGAATTGATGT+TGG | 0.576565 | 1_3:-52180421 | None:intergenic |
| AACATGGAAGGTGGTAGAGG+AGG | 0.584377 | 1_3:-52180646 | None:intergenic |
| TCTATTTGCAAGGTTGAAGG+AGG | 0.594942 | 1_3:-52181143 | None:intergenic |
| TATATTTGATAATTGTGTTG+TGG | 0.597437 | 1_3:+52180765 | Msa0124400:CDS |
| GAACAAAGTTTGTAGCTCAA+GGG | 0.606947 | 1_3:+52180486 | Msa0124400:CDS |
| TTTGGTGAACCAAATAGAGA+TGG | 0.621510 | 1_3:-52180337 | None:intergenic |
| TGTGACTCAAACATGGAAGG+TGG | 0.643194 | 1_3:-52180655 | None:intergenic |
| AAGACCAAGACCAAGACCAA+TGG | 0.659900 | 1_3:-52180527 | None:intergenic |
| AGAATGTAGACACAAAGAGA+TGG | 0.662022 | 1_3:+52181031 | Msa0124400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATATATGGCTTTTAA+AGG | - | chr1_3:52179943-52179962 | None:intergenic | 15.0% |
| !! | ATATGACTGAATAATATATA+TGG | - | chr1_3:52179953-52179972 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTATGCAG+AGG | + | chr1_3:52180987-52181006 | Msa0124400:intron | 15.0% |
| !!! | ATAATATATATGGCTTTTAA+AGG | - | chr1_3:52179943-52179962 | None:intergenic | 15.0% |
| !! | ATATGACTGAATAATATATA+TGG | - | chr1_3:52179953-52179972 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTATGCAG+AGG | + | chr1_3:52180987-52181006 | Msa0124400:intron | 15.0% |
| !!! | ATTGTAGTGAAATTTTGATT+TGG | - | chr1_3:52180316-52180335 | None:intergenic | 20.0% |
| !! | AAATGAAAATCTCTATAGTT+TGG | - | chr1_3:52180358-52180377 | None:intergenic | 20.0% |
| !!! | CAAATATATGAGTTGTTTTT+GGG | - | chr1_3:52180753-52180772 | None:intergenic | 20.0% |
| !!! | TCAAATATATGAGTTGTTTT+TGG | - | chr1_3:52180754-52180773 | None:intergenic | 20.0% |
| !!! | TATATTTGATAATTGTGTTG+TGG | + | chr1_3:52180765-52180784 | Msa0124400:CDS | 20.0% |
| !!! | ATTGTAGTGAAATTTTGATT+TGG | - | chr1_3:52180316-52180335 | None:intergenic | 20.0% |
| !! | AAATGAAAATCTCTATAGTT+TGG | - | chr1_3:52180358-52180377 | None:intergenic | 20.0% |
| !!! | CAAATATATGAGTTGTTTTT+GGG | - | chr1_3:52180753-52180772 | None:intergenic | 20.0% |
| !!! | TCAAATATATGAGTTGTTTT+TGG | - | chr1_3:52180754-52180773 | None:intergenic | 20.0% |
| !!! | TATATTTGATAATTGTGTTG+TGG | + | chr1_3:52180765-52180784 | Msa0124400:CDS | 20.0% |
| ! | AAAGAAAGAGAAGAAAAAGA+AGG | - | chr1_3:52180002-52180021 | None:intergenic | 25.0% |
| ! | AAAGTAGATTCAAAAACCAT+TGG | + | chr1_3:52180511-52180530 | Msa0124400:CDS | 25.0% |
| !!! | TGATCAGAATTTTGATGAAA+AGG | - | chr1_3:52180574-52180593 | None:intergenic | 25.0% |
| ! | CACACAAATAGAACTTAAAA+AGG | - | chr1_3:52181117-52181136 | None:intergenic | 25.0% |
| ! | AAAGAAAGAGAAGAAAAAGA+AGG | - | chr1_3:52180002-52180021 | None:intergenic | 25.0% |
| ! | AAAGTAGATTCAAAAACCAT+TGG | + | chr1_3:52180511-52180530 | Msa0124400:CDS | 25.0% |
| !!! | TGATCAGAATTTTGATGAAA+AGG | - | chr1_3:52180574-52180593 | None:intergenic | 25.0% |
| ! | CACACAAATAGAACTTAAAA+AGG | - | chr1_3:52181117-52181136 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAACTTTTGACA+TGG | - | chr1_3:52179987-52180006 | None:intergenic | 30.0% |
| AAAGTGTACTGAATTGTGTT+TGG | - | chr1_3:52180137-52180156 | None:intergenic | 30.0% | |
| AATTCAGTACACTTTCACTT+AGG | + | chr1_3:52180142-52180161 | Msa0124400:five_prime_UTR | 30.0% | |
| !! | ATTGAAAAGTGTTTCACTTG+AGG | - | chr1_3:52180186-52180205 | None:intergenic | 30.0% |
| ACTACAATACCATCTCTATT+TGG | + | chr1_3:52180328-52180347 | Msa0124400:CDS | 30.0% | |
| TTTGTGTCAAGAATTGATGT+TGG | - | chr1_3:52180424-52180443 | None:intergenic | 30.0% | |
| ! | TCCTATTGGTAATTGAGAAA+GGG | - | chr1_3:52180468-52180487 | None:intergenic | 30.0% |
| ! | TTCCTATTGGTAATTGAGAA+AGG | - | chr1_3:52180469-52180488 | None:intergenic | 30.0% |
| AGCAATAGAAAAGTTCTGTT+TGG | + | chr1_3:52180601-52180620 | Msa0124400:CDS | 30.0% | |
| !!! | ACTTTTTTGTGACTCAAACA+TGG | - | chr1_3:52180665-52180684 | None:intergenic | 30.0% |
| !!! | ATATGAGTTGTTTTTGGGTT+TGG | - | chr1_3:52180748-52180767 | None:intergenic | 30.0% |
| AAAAAGAGTGAGGACTATTA+GGG | - | chr1_3:52180810-52180829 | None:intergenic | 30.0% | |
| AAATTCAGTGAAAAAGAGTG+AGG | - | chr1_3:52180820-52180839 | None:intergenic | 30.0% | |
| CAAAAGACATCTTCATTTAC+AGG | + | chr1_3:52180881-52180900 | Msa0124400:CDS | 30.0% | |
| TACTTGAGCAAAGCTTATTA+AGG | + | chr1_3:52180947-52180966 | Msa0124400:intron | 30.0% | |
| !! | ATTAAGGAGCATTAACTTGA+TGG | + | chr1_3:52180963-52180982 | Msa0124400:intron | 30.0% |
| ! | CTCTTTTATCTCTATTTGCA+AGG | - | chr1_3:52181156-52181175 | None:intergenic | 30.0% |
| CTTGCAAATAGAGATAAAAG+AGG | + | chr1_3:52181154-52181173 | Msa0124400:three_prime_UTR | 30.0% | |
| ! | AAAGAAGGAAACTTTTGACA+TGG | - | chr1_3:52179987-52180006 | None:intergenic | 30.0% |
| AAAGTGTACTGAATTGTGTT+TGG | - | chr1_3:52180137-52180156 | None:intergenic | 30.0% | |
| AATTCAGTACACTTTCACTT+AGG | + | chr1_3:52180142-52180161 | Msa0124400:five_prime_UTR | 30.0% | |
| !! | ATTGAAAAGTGTTTCACTTG+AGG | - | chr1_3:52180186-52180205 | None:intergenic | 30.0% |
| ACTACAATACCATCTCTATT+TGG | + | chr1_3:52180328-52180347 | Msa0124400:CDS | 30.0% | |
| TTTGTGTCAAGAATTGATGT+TGG | - | chr1_3:52180424-52180443 | None:intergenic | 30.0% | |
| ! | TCCTATTGGTAATTGAGAAA+GGG | - | chr1_3:52180468-52180487 | None:intergenic | 30.0% |
| ! | TTCCTATTGGTAATTGAGAA+AGG | - | chr1_3:52180469-52180488 | None:intergenic | 30.0% |
| AGCAATAGAAAAGTTCTGTT+TGG | + | chr1_3:52180601-52180620 | Msa0124400:CDS | 30.0% | |
| !!! | ACTTTTTTGTGACTCAAACA+TGG | - | chr1_3:52180665-52180684 | None:intergenic | 30.0% |
| !!! | ATATGAGTTGTTTTTGGGTT+TGG | - | chr1_3:52180748-52180767 | None:intergenic | 30.0% |
| AAAAAGAGTGAGGACTATTA+GGG | - | chr1_3:52180810-52180829 | None:intergenic | 30.0% | |
| AAATTCAGTGAAAAAGAGTG+AGG | - | chr1_3:52180820-52180839 | None:intergenic | 30.0% | |
| CAAAAGACATCTTCATTTAC+AGG | + | chr1_3:52180881-52180900 | Msa0124400:CDS | 30.0% | |
| TACTTGAGCAAAGCTTATTA+AGG | + | chr1_3:52180947-52180966 | Msa0124400:intron | 30.0% | |
| !! | ATTAAGGAGCATTAACTTGA+TGG | + | chr1_3:52180963-52180982 | Msa0124400:intron | 30.0% |
| ! | CTCTTTTATCTCTATTTGCA+AGG | - | chr1_3:52181156-52181175 | None:intergenic | 30.0% |
| CTTGCAAATAGAGATAAAAG+AGG | + | chr1_3:52181154-52181173 | Msa0124400:three_prime_UTR | 30.0% | |
| ! | GAAAAAGCATGATTTAGCAG+TGG | - | chr1_3:52180092-52180111 | None:intergenic | 35.0% |
| TGTTTCACTTGAGGAGTTTA+AGG | - | chr1_3:52180177-52180196 | None:intergenic | 35.0% | |
| AGTCACCAAACAAAGTTTGA+TGG | + | chr1_3:52180279-52180298 | Msa0124400:CDS | 35.0% | |
| GTCACCAAACAAAGTTTGAT+GGG | + | chr1_3:52180280-52180299 | Msa0124400:CDS | 35.0% | |
| TTCACCCATCAAACTTTGTT+TGG | - | chr1_3:52180287-52180306 | None:intergenic | 35.0% | |
| TTTGGTGAACCAAATAGAGA+TGG | - | chr1_3:52180340-52180359 | None:intergenic | 35.0% | |
| ACTTCCAAAAAATCTCTCAC+TGG | + | chr1_3:52180379-52180398 | Msa0124400:CDS | 35.0% | |
| !!! | AGTTCCAGTGAGAGATTTTT+TGG | - | chr1_3:52180386-52180405 | None:intergenic | 35.0% |
| ! | TGAGAAAGGGTTTTCAAATG+AGG | - | chr1_3:52180455-52180474 | None:intergenic | 35.0% |
| ACCCTTTCTCAATTACCAAT+AGG | + | chr1_3:52180464-52180483 | Msa0124400:CDS | 35.0% | |
| GCTACAAACTTTGTTCCTAT+TGG | - | chr1_3:52180482-52180501 | None:intergenic | 35.0% | |
| GAACAAAGTTTGTAGCTCAA+GGG | + | chr1_3:52180486-52180505 | Msa0124400:CDS | 35.0% | |
| ! | GATTCAAAAACCATTGGTCT+TGG | + | chr1_3:52180517-52180536 | Msa0124400:CDS | 35.0% |
| ! | TTTTGTGACTCAAACATGGA+AGG | - | chr1_3:52180661-52180680 | None:intergenic | 35.0% |
| ! | TGTTCTTAGTTTGAGTGAGA+TGG | + | chr1_3:52180684-52180703 | Msa0124400:CDS | 35.0% |
| TACACATGTGTGATATCTCA+TGG | + | chr1_3:52180721-52180740 | Msa0124400:CDS | 35.0% | |
| GAAAAAGAGTGAGGACTATT+AGG | - | chr1_3:52180811-52180830 | None:intergenic | 35.0% | |
| AGAATGTAGACACAAAGAGA+TGG | + | chr1_3:52181031-52181050 | Msa0124400:CDS | 35.0% | |
| ATCTCTATTTGCAAGGTTGA+AGG | - | chr1_3:52181149-52181168 | None:intergenic | 35.0% | |
| TGTGCATGAAAATCAAACGT+TGG | - | chr1_3:52179899-52179918 | None:intergenic | 35.0% | |
| ! | GAAAAAGCATGATTTAGCAG+TGG | - | chr1_3:52180092-52180111 | None:intergenic | 35.0% |
| TGTTTCACTTGAGGAGTTTA+AGG | - | chr1_3:52180177-52180196 | None:intergenic | 35.0% | |
| AGTCACCAAACAAAGTTTGA+TGG | + | chr1_3:52180279-52180298 | Msa0124400:CDS | 35.0% | |
| GTCACCAAACAAAGTTTGAT+GGG | + | chr1_3:52180280-52180299 | Msa0124400:CDS | 35.0% | |
| TTCACCCATCAAACTTTGTT+TGG | - | chr1_3:52180287-52180306 | None:intergenic | 35.0% | |
| TTTGGTGAACCAAATAGAGA+TGG | - | chr1_3:52180340-52180359 | None:intergenic | 35.0% | |
| ACTTCCAAAAAATCTCTCAC+TGG | + | chr1_3:52180379-52180398 | Msa0124400:CDS | 35.0% | |
| !!! | AGTTCCAGTGAGAGATTTTT+TGG | - | chr1_3:52180386-52180405 | None:intergenic | 35.0% |
| ! | TGAGAAAGGGTTTTCAAATG+AGG | - | chr1_3:52180455-52180474 | None:intergenic | 35.0% |
| ACCCTTTCTCAATTACCAAT+AGG | + | chr1_3:52180464-52180483 | Msa0124400:CDS | 35.0% | |
| GCTACAAACTTTGTTCCTAT+TGG | - | chr1_3:52180482-52180501 | None:intergenic | 35.0% | |
| GAACAAAGTTTGTAGCTCAA+GGG | + | chr1_3:52180486-52180505 | Msa0124400:CDS | 35.0% | |
| ! | GATTCAAAAACCATTGGTCT+TGG | + | chr1_3:52180517-52180536 | Msa0124400:CDS | 35.0% |
| ! | TTTTGTGACTCAAACATGGA+AGG | - | chr1_3:52180661-52180680 | None:intergenic | 35.0% |
| ! | TGTTCTTAGTTTGAGTGAGA+TGG | + | chr1_3:52180684-52180703 | Msa0124400:CDS | 35.0% |
| TACACATGTGTGATATCTCA+TGG | + | chr1_3:52180721-52180740 | Msa0124400:CDS | 35.0% | |
| GAAAAAGAGTGAGGACTATT+AGG | - | chr1_3:52180811-52180830 | None:intergenic | 35.0% | |
| AGAATGTAGACACAAAGAGA+TGG | + | chr1_3:52181031-52181050 | Msa0124400:CDS | 35.0% | |
| ATCTCTATTTGCAAGGTTGA+AGG | - | chr1_3:52181149-52181168 | None:intergenic | 35.0% | |
| GGAACAAAGTTTGTAGCTCA+AGG | + | chr1_3:52180485-52180504 | Msa0124400:CDS | 40.0% | |
| !! | AAAACCATTGGTCTTGGTCT+TGG | + | chr1_3:52180523-52180542 | Msa0124400:CDS | 40.0% |
| TCTATTTGCAAGGTTGAAGG+AGG | - | chr1_3:52181146-52181165 | None:intergenic | 40.0% | |
| GGAACAAAGTTTGTAGCTCA+AGG | + | chr1_3:52180485-52180504 | Msa0124400:CDS | 40.0% | |
| !! | AAAACCATTGGTCTTGGTCT+TGG | + | chr1_3:52180523-52180542 | Msa0124400:CDS | 40.0% |
| TCTATTTGCAAGGTTGAAGG+AGG | - | chr1_3:52181146-52181165 | None:intergenic | 40.0% | |
| AAGACCAAGACCAAGACCAA+TGG | - | chr1_3:52180530-52180549 | None:intergenic | 45.0% | |
| TCAAACATGGAAGGTGGTAG+AGG | - | chr1_3:52180652-52180671 | None:intergenic | 45.0% | |
| TGTGACTCAAACATGGAAGG+TGG | - | chr1_3:52180658-52180677 | None:intergenic | 45.0% | |
| AAGACCAAGACCAAGACCAA+TGG | - | chr1_3:52180530-52180549 | None:intergenic | 45.0% | |
| TCAAACATGGAAGGTGGTAG+AGG | - | chr1_3:52180652-52180671 | None:intergenic | 45.0% | |
| TGTGACTCAAACATGGAAGG+TGG | - | chr1_3:52180658-52180677 | None:intergenic | 45.0% | |
| !! | GGTCTTGGTCTTGGTCTTGT+TGG | + | chr1_3:52180532-52180551 | Msa0124400:CDS | 50.0% |
| ACATGGAAGGTGGTAGAGGA+GGG | - | chr1_3:52180648-52180667 | None:intergenic | 50.0% | |
| AACATGGAAGGTGGTAGAGG+AGG | - | chr1_3:52180649-52180668 | None:intergenic | 50.0% | |
| !! | GGTCTTGGTCTTGGTCTTGT+TGG | + | chr1_3:52180532-52180551 | Msa0124400:CDS | 50.0% |
| ACATGGAAGGTGGTAGAGGA+GGG | - | chr1_3:52180648-52180667 | None:intergenic | 50.0% | |
| AACATGGAAGGTGGTAGAGG+AGG | - | chr1_3:52180649-52180668 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52179898 | 52181264 | 52179898 | ID=Msa0124400;Name=Msa0124400 |
| chr1_3 | mRNA | 52179898 | 52181264 | 52179898 | ID=Msa0124400-mRNA-1;Parent=Msa0124400;Name=Msa0124400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=355|1|1|1|1|1|2|188|239 |
| chr1_3 | exon | 52179898 | 52180902 | 52179898 | ID=Msa0124400-mRNA-1:exon:15964;Parent=Msa0124400-mRNA-1 |
| chr1_3 | exon | 52181007 | 52181264 | 52181007 | ID=Msa0124400-mRNA-1:exon:15965;Parent=Msa0124400-mRNA-1 |
| chr1_3 | five_prime_UTR | 52179898 | 52180252 | 52179898 | ID=Msa0124400-mRNA-1:five_prime_utr;Parent=Msa0124400-mRNA-1 |
| chr1_3 | CDS | 52180253 | 52180902 | 52180253 | ID=Msa0124400-mRNA-1:cds;Parent=Msa0124400-mRNA-1 |
| chr1_3 | CDS | 52181007 | 52181076 | 52181007 | ID=Msa0124400-mRNA-1:cds;Parent=Msa0124400-mRNA-1 |
| chr1_3 | three_prime_UTR | 52181077 | 52181264 | 52181077 | ID=Msa0124400-mRNA-1:three_prime_utr;Parent=Msa0124400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
