Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124490 | KAF7016733.1 | 96.460 | 113 | 4 | 0 | 2 | 114 | 21 | 133 | 1.18e-73 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124490 | sp|P80553|H3_NARPS | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.22e-76 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124490 | A0A3B6DFK7 | 96.460 | 113 | 4 | 0 | 2 | 114 | 21 | 133 | 5.63e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0124490 | Msa1082500 | 0.806408 | 8.347415e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124490 | MtrunA17_Chr4g0054161 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 3.11e-77 | 224 |
| Msa0124490 | MtrunA17_Chr8g0363741 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 3.11e-77 | 224 |
| Msa0124490 | MtrunA17_Chr1g0156021 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 3.11e-77 | 224 |
| Msa0124490 | MtrunA17_Chr4g0054151 | 96.429 | 112 | 4 | 0 | 3 | 114 | 28 | 139 | 3.83e-77 | 224 |
| Msa0124490 | MtrunA17_Chr8g0388121 | 95.536 | 112 | 5 | 0 | 3 | 114 | 25 | 136 | 1.28e-76 | 222 |
| Msa0124490 | MtrunA17_Chr5g0410931 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr5g0410951 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr8g0383851 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr8g0383781 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr8g0390361 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr2g0295191 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr7g0237661 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr4g0033041 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr7g0218971 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr4g0046301 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr8g0364801 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 6.24e-74 | 215 |
| Msa0124490 | MtrunA17_Chr2g0319141 | 89.286 | 112 | 12 | 0 | 3 | 114 | 25 | 136 | 1.68e-72 | 212 |
| Msa0124490 | MtrunA17_Chr2g0319151 | 89.286 | 112 | 12 | 0 | 3 | 114 | 25 | 136 | 1.68e-72 | 212 |
| Msa0124490 | MtrunA17_Chr2g0319131 | 93.204 | 103 | 7 | 0 | 12 | 114 | 44 | 146 | 9.49e-67 | 197 |
| Msa0124490 | MtrunA17_Chr7g0218961 | 81.416 | 113 | 21 | 0 | 2 | 114 | 1 | 113 | 1.26e-63 | 188 |
| Msa0124490 | MtrunA17_Chr2g0319121 | 81.982 | 111 | 18 | 2 | 4 | 113 | 26 | 135 | 2.94e-60 | 181 |
| Msa0124490 | MtrunA17_Chr7g0222991 | 70.588 | 102 | 30 | 0 | 11 | 112 | 41 | 142 | 2.00e-48 | 151 |
| Msa0124490 | MtrunA17_Chr7g0223001 | 61.261 | 111 | 31 | 2 | 3 | 112 | 47 | 146 | 1.01e-38 | 127 |
| Msa0124490 | MtrunA17_Chr8g0347231 | 53.061 | 98 | 45 | 1 | 15 | 111 | 28 | 125 | 2.01e-29 | 102 |
| Msa0124490 | MtrunA17_Chr5g0407311 | 57.609 | 92 | 37 | 1 | 3 | 94 | 24 | 113 | 7.45e-29 | 100 |
| Msa0124490 | MtrunA17_Chr7g0240791 | 92.857 | 42 | 3 | 0 | 3 | 44 | 25 | 66 | 1.20e-21 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124490 | AT4G40030.3 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT4G40030.1 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT4G40030.4 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT5G10980.1 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT4G40040.2 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT4G40040.3 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT4G40040.1 | 96.429 | 112 | 4 | 0 | 3 | 114 | 25 | 136 | 4.29e-77 | 224 |
| Msa0124490 | AT4G40030.2 | 96.429 | 112 | 4 | 0 | 3 | 114 | 53 | 164 | 1.20e-76 | 224 |
| Msa0124490 | AT1G75600.1 | 94.643 | 112 | 6 | 0 | 3 | 114 | 25 | 136 | 6.04e-76 | 221 |
| Msa0124490 | AT1G13370.1 | 93.750 | 112 | 7 | 0 | 3 | 114 | 25 | 136 | 1.02e-74 | 218 |
| Msa0124490 | AT1G09200.1 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 8.52e-74 | 215 |
| Msa0124490 | AT5G65360.1 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 8.52e-74 | 215 |
| Msa0124490 | AT5G10390.1 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 8.52e-74 | 215 |
| Msa0124490 | AT5G10400.1 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 8.52e-74 | 215 |
| Msa0124490 | AT3G27360.1 | 92.857 | 112 | 8 | 0 | 3 | 114 | 25 | 136 | 8.52e-74 | 215 |
| Msa0124490 | AT5G65350.1 | 89.286 | 112 | 12 | 0 | 3 | 114 | 25 | 136 | 1.99e-71 | 209 |
| Msa0124490 | AT1G19890.1 | 86.726 | 113 | 14 | 1 | 3 | 114 | 25 | 137 | 8.76e-67 | 197 |
| Msa0124490 | AT5G12910.1 | 75.000 | 104 | 26 | 0 | 10 | 113 | 27 | 130 | 1.36e-55 | 169 |
| Msa0124490 | AT1G01370.2 | 53.398 | 103 | 46 | 1 | 12 | 112 | 72 | 174 | 2.52e-29 | 104 |
| Msa0124490 | AT1G01370.1 | 53.398 | 103 | 46 | 1 | 12 | 112 | 72 | 174 | 2.52e-29 | 104 |
| Msa0124490 | AT1G01370.4 | 53.398 | 103 | 46 | 1 | 12 | 112 | 72 | 174 | 2.52e-29 | 104 |
| Msa0124490 | AT1G01370.3 | 53.398 | 103 | 46 | 1 | 12 | 112 | 72 | 174 | 2.52e-29 | 104 |
Find 33 sgRNAs with CRISPR-Local
Find 839 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGGCGGATTAGTATTT+TGG | 0.183704 | 1_3:+52285488 | Msa0124490:three_prime_UTR |
| CCATGCAGTTCTTGCACTTC+AGG | 0.275497 | 1_3:+52285316 | Msa0124490:CDS |
| TGAAATCTTGAGCAATTTCA+TGG | 0.287313 | 1_3:-52285170 | None:intergenic |
| TACCGAAGTGCGACGGTTCC+AGG | 0.319747 | 1_3:-52283945 | None:intergenic |
| CATTCGCGGTGAACGTGCTT+AGG | 0.341832 | 1_3:+52285445 | Msa0124490:CDS |
| AGCATGAATTGCACACATAT+TGG | 0.354940 | 1_3:-52285378 | None:intergenic |
| TCAAAAGCTCAGTACTCTTC+TGG | 0.362715 | 1_3:-52285119 | None:intergenic |
| GTGCAAGAACTGCATGGCTC+TGG | 0.421979 | 1_3:-52285310 | None:intergenic |
| TCATGGACAAGACGCTGAAA+TGG | 0.444662 | 1_3:-52285153 | None:intergenic |
| TTACCTGGTTGGATTGTTTG+AGG | 0.445449 | 1_3:+52285352 | Msa0124490:CDS |
| GGAAGCAGCTGAGGCTTACC+TGG | 0.448380 | 1_3:+52285337 | Msa0124490:CDS |
| TGAAATTGCTCAAGATTTCA+AGG | 0.454990 | 1_3:+52285173 | Msa0124490:CDS |
| CAGCTTGCTCATCGCATTCG+CGG | 0.461658 | 1_3:+52285431 | Msa0124490:CDS |
| AAACCTCACCGTTACCGTCC+TGG | 0.463835 | 1_3:+52283927 | Msa0124490:CDS |
| AGGAAATCTGCTCCTACTAC+TGG | 0.467062 | 1_3:+52283894 | Msa0124490:CDS |
| TGAGCAAGCTGAATGTCCTT+TGG | 0.480432 | 1_3:-52285419 | None:intergenic |
| CAGTACTCTTCTGGTACTTA+CGG | 0.482178 | 1_3:-52285110 | None:intergenic |
| ATTCGCGGTGAACGTGCTTA+GGG | 0.501136 | 1_3:+52285446 | Msa0124490:CDS |
| TGCACTTCAGGAAGCAGCTG+AGG | 0.513447 | 1_3:+52285328 | Msa0124490:CDS |
| GCAGCTGAGGCTTACCTGGT+TGG | 0.521313 | 1_3:+52285341 | Msa0124490:CDS |
| GTCCTGGAACCGTCGCACTT+CGG | 0.565588 | 1_3:+52283943 | Msa0124490:CDS |
| CGACGGTTCCAGGACGGTAA+CGG | 0.569651 | 1_3:-52283935 | None:intergenic |
| CGCGGTGAACGTGCTTAGGG+TGG | 0.589504 | 1_3:+52285449 | Msa0124490:exon |
| CCTGAAGTGCAAGAACTGCA+TGG | 0.601251 | 1_3:-52285316 | None:intergenic |
| ACGAAATTACCGAAGTGCGA+CGG | 0.610470 | 1_3:-52283952 | None:intergenic |
| AAATCTGCTCCTACTACTGG+AGG | 0.621448 | 1_3:+52283897 | Msa0124490:CDS |
| GAACGTGCTTAGGGTGGTGA+AGG | 0.623913 | 1_3:+52285455 | Msa0124490:exon |
| GTGTGCAATTCATGCTAAGA+GGG | 0.629194 | 1_3:+52285385 | Msa0124490:CDS |
| GAGGGTGACAATTATGCCAA+AGG | 0.629580 | 1_3:+52285403 | Msa0124490:CDS |
| TGTGTGCAATTCATGCTAAG+AGG | 0.646985 | 1_3:+52285384 | Msa0124490:CDS |
| TGTCCTCAAACAATCCAACC+AGG | 0.667495 | 1_3:-52285355 | None:intergenic |
| GTTCCAGGACGGTAACGGTG+AGG | 0.678668 | 1_3:-52283930 | None:intergenic |
| GAAGTGCGACGGTTCCAGGA+CGG | 0.701371 | 1_3:-52283941 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTTATTATAAACA+TGG | - | chr1_3:52275704-52275723 | None:intergenic | 10.0% |
| !! | AATACAAAAAATTGTTTATA+TGG | - | chr1_3:52276309-52276328 | None:intergenic | 10.0% |
| !!! | ATTGCATTTTATTTTATTTT+AGG | - | chr1_3:52278211-52278230 | None:intergenic | 10.0% |
| !!! | TAATTTGATTAACTTTTTAA+TGG | - | chr1_3:52282434-52282453 | None:intergenic | 10.0% |
| !!! | ATTGCATTTTATTTTATTTT+AGG | - | chr1_3:52278211-52278230 | None:intergenic | 10.0% |
| !! | TAAATAATTAGTTAGTTAGT+TGG | - | chr1_3:52275611-52275630 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGTATTGATATT+TGG | + | chr1_3:52276315-52276334 | Msa0124490:intron | 15.0% |
| !! | AGAAGAAAGATTATAAAATA+GGG | + | chr1_3:52277251-52277270 | Msa0124490:intron | 15.0% |
| !! | TGAATCTAAATTAGAAATTA+CGG | + | chr1_3:52277710-52277729 | Msa0124490:intron | 15.0% |
| !!! | TTATTTTAGGAATGAATATA+TGG | - | chr1_3:52278198-52278217 | None:intergenic | 15.0% |
| !! | TTAAAGTAAAAGATTCAAAA+AGG | + | chr1_3:52278231-52278250 | Msa0124490:intron | 15.0% |
| !! | TAATTTGAACTTAACAATTA+GGG | - | chr1_3:52278756-52278775 | None:intergenic | 15.0% |
| !! | TAATTGTTAAGTTCAAATTA+GGG | + | chr1_3:52278756-52278775 | Msa0124490:intron | 15.0% |
| !! | TTAATTGTTAAAGTTAAATG+GGG | - | chr1_3:52278847-52278866 | None:intergenic | 15.0% |
| !! | CTTAATTGTTAAAGTTAAAT+GGG | - | chr1_3:52278848-52278867 | None:intergenic | 15.0% |
| !! | TCTTAATTGTTAAAGTTAAA+TGG | - | chr1_3:52278849-52278868 | None:intergenic | 15.0% |
| !! | AGAAGAAAGATTATAAAATA+GGG | + | chr1_3:52277251-52277270 | Msa0124490:intron | 15.0% |
| !!! | TTATTTTAGGAATGAATATA+TGG | - | chr1_3:52278198-52278217 | None:intergenic | 15.0% |
| !! | TTAAAGTAAAAGATTCAAAA+AGG | + | chr1_3:52278231-52278250 | Msa0124490:intron | 15.0% |
| !!! | ATTTTGGATTCATAATTTTT+AGG | + | chr1_3:52284015-52284034 | Msa0124490:intron | 15.0% |
| !!! | TATATTTGAATACATTGTTT+TGG | + | chr1_3:52284159-52284178 | Msa0124490:intron | 15.0% |
| !! | AATATATGGAGAAAAAAATA+TGG | + | chr1_3:52284805-52284824 | Msa0124490:intron | 15.0% |
| !! | TGTTAAAAATTGAACATTAT+AGG | - | chr1_3:52285569-52285588 | None:intergenic | 15.0% |
| !! | TAAAAACTGAATTGAACATA+CGG | - | chr1_3:52276280-52276299 | None:intergenic | 20.0% |
| !! | AAATTATCAACAAGACTAAA+TGG | - | chr1_3:52276393-52276412 | None:intergenic | 20.0% |
| !! | ATTAAAAAATGTACCTTTGA+AGG | + | chr1_3:52276843-52276862 | Msa0124490:intron | 20.0% |
| !! | TTAATCCTCAACATAATATA+AGG | - | chr1_3:52276938-52276957 | None:intergenic | 20.0% |
| !! | GAGAAGAAAGATTATAAAAT+AGG | + | chr1_3:52277250-52277269 | Msa0124490:intron | 20.0% |
| !! | GAAGAAAGATTATAAAATAG+GGG | + | chr1_3:52277252-52277271 | Msa0124490:intron | 20.0% |
| !! | AAGAAAGATTATAAAATAGG+GGG | + | chr1_3:52277253-52277272 | Msa0124490:intron | 20.0% |
| !!! | ATAATAAAATAAAGGAGCAT+TGG | + | chr1_3:52277299-52277318 | Msa0124490:intron | 20.0% |
| !!! | TAATAAAATAAAGGAGCATT+GGG | + | chr1_3:52277300-52277319 | Msa0124490:intron | 20.0% |
| !! | TTAAAATCTAAGCAACTATA+AGG | + | chr1_3:52277965-52277984 | Msa0124490:intron | 20.0% |
| !! | TAAAATCTAAGCAACTATAA+GGG | + | chr1_3:52277966-52277985 | Msa0124490:intron | 20.0% |
| !! | AGCAACAAAAAGTTTAATTA+TGG | + | chr1_3:52278395-52278414 | Msa0124490:intron | 20.0% |
| !! | AATTAACAATTTAAGCACAA+AGG | + | chr1_3:52278667-52278686 | Msa0124490:intron | 20.0% |
| !! | ATTAACAATTTAAGCACAAA+GGG | + | chr1_3:52278668-52278687 | Msa0124490:intron | 20.0% |
| !! | CTAATTTGAACTTAACAATT+AGG | - | chr1_3:52278757-52278776 | None:intergenic | 20.0% |
| !! | CTAATTGTTAAGTTCAAATT+AGG | + | chr1_3:52278755-52278774 | Msa0124490:intron | 20.0% |
| !!! | TTTTACTCTAAAGACTTTTA+AGG | + | chr1_3:52278921-52278940 | Msa0124490:intron | 20.0% |
| !!! | TTTACTCTAAAGACTTTTAA+GGG | + | chr1_3:52278922-52278941 | Msa0124490:intron | 20.0% |
| !! | AAACAAAAGAATAAAGTTCA+AGG | + | chr1_3:52279205-52279224 | Msa0124490:intron | 20.0% |
| !! | AACAAAAGAATAAAGTTCAA+GGG | + | chr1_3:52279206-52279225 | Msa0124490:intron | 20.0% |
| !!! | TCATTTGAAATTTTTTGCAA+TGG | - | chr1_3:52280323-52280342 | None:intergenic | 20.0% |
| !! | TAAATTGTCATCTAAACTTA+AGG | - | chr1_3:52281538-52281557 | None:intergenic | 20.0% |
| !!! | ATTTTGAATTAGATGACATT+AGG | - | chr1_3:52281988-52282007 | None:intergenic | 20.0% |
| !!! | TGTTGTCCAAAATTTTTTTT+AGG | + | chr1_3:52282079-52282098 | Msa0124490:intron | 20.0% |
| !!! | GTTGTCCAAAATTTTTTTTA+GGG | + | chr1_3:52282080-52282099 | Msa0124490:intron | 20.0% |
| !!! | TTGTCCAAAATTTTTTTTAG+GGG | + | chr1_3:52282081-52282100 | Msa0124490:intron | 20.0% |
| !! | ACTATACTCAATTTAATCAA+GGG | - | chr1_3:52282135-52282154 | None:intergenic | 20.0% |
| !! | AACTATACTCAATTTAATCA+AGG | - | chr1_3:52282136-52282155 | None:intergenic | 20.0% |
| !! | GAGAAGAAAGATTATAAAAT+AGG | + | chr1_3:52277250-52277269 | Msa0124490:intron | 20.0% |
| !! | GAAGAAAGATTATAAAATAG+GGG | + | chr1_3:52277252-52277271 | Msa0124490:intron | 20.0% |
| !! | AAGAAAGATTATAAAATAGG+GGG | + | chr1_3:52277253-52277272 | Msa0124490:intron | 20.0% |
| !! | AATTACAGTTACATGAAATT+AGG | + | chr1_3:52283069-52283088 | Msa0124490:intron | 20.0% |
| !! | ATTACAGTTACATGAAATTA+GGG | + | chr1_3:52283070-52283089 | Msa0124490:intron | 20.0% |
| !! | TTAAAATCTAAGCAACTATA+AGG | + | chr1_3:52277965-52277984 | Msa0124490:intron | 20.0% |
| !! | TAAAATCTAAGCAACTATAA+GGG | + | chr1_3:52277966-52277985 | Msa0124490:intron | 20.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr1_3:52283982-52284001 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr1_3:52283999-52284018 | Msa0124490:intron | 20.0% |
| !!! | TTTTAGGAATTTTGAATTTG+TGG | + | chr1_3:52284031-52284050 | Msa0124490:intron | 20.0% |
| !!! | ATTTGTGGTTTATGATTTTT+AGG | + | chr1_3:52284046-52284065 | Msa0124490:intron | 20.0% |
| !! | TATTATACAACAAGATTTCT+AGG | - | chr1_3:52284874-52284893 | None:intergenic | 20.0% |
| !! | TATTAGGCATAATATATGAA+AGG | - | chr1_3:52284922-52284941 | None:intergenic | 20.0% |
| !! | ATAACATCAAAATTAACCTT+TGG | - | chr1_3:52285078-52285097 | None:intergenic | 20.0% |
| !! | ACAAATTAAATAAACCAAAG+AGG | - | chr1_3:52285247-52285266 | None:intergenic | 20.0% |
| !!! | TTTCATATTGTTGTTATAGA+CGG | + | chr1_3:52285277-52285296 | Msa0124490:intron | 20.0% |
| !!! | TTTTAACAACAGACATATTT+TGG | + | chr1_3:52285581-52285600 | Msa0124490:three_prime_UTR | 20.0% |
| !!! | AAGTTTGTACTAGATTTTAT+TGG | + | chr1_3:52285628-52285647 | Msa0124490:three_prime_UTR | 20.0% |
| !!! | AGTTTGTACTAGATTTTATT+GGG | + | chr1_3:52285629-52285648 | Msa0124490:three_prime_UTR | 20.0% |
| !!! | TAGATTTTATTGGGAATATT+TGG | + | chr1_3:52285638-52285657 | Msa0124490:three_prime_UTR | 20.0% |
| !!! | AAACATGGTTTTTGATTAAC+AGG | - | chr1_3:52275689-52275708 | None:intergenic | 25.0% |
| ! | AACAAAAAAAACGAAACAAC+TGG | - | chr1_3:52275796-52275815 | None:intergenic | 25.0% |
| !!! | AGATTTGTTGTCAACATTAT+CGG | + | chr1_3:52275828-52275847 | Msa0124490:intron | 25.0% |
| ! | TAAAATTGTAATCGTAACCA+TGG | + | chr1_3:52275902-52275921 | Msa0124490:intron | 25.0% |
| !!! | TTTTGGTCATAGTCATTTTT+AGG | + | chr1_3:52275979-52275998 | Msa0124490:intron | 25.0% |
| !! | TGATGTCTACATAATTTTGT+AGG | - | chr1_3:52276107-52276126 | None:intergenic | 25.0% |
| !! | CAATGTTTCAAAAGTTGATT+TGG | + | chr1_3:52276125-52276144 | Msa0124490:intron | 25.0% |
| ! | CTTCTATTTGGTTATTTGAA+CGG | - | chr1_3:52276227-52276246 | None:intergenic | 25.0% |
| !!! | ATATTTTAGTGAAGTCAAGA+AGG | + | chr1_3:52276345-52276364 | Msa0124490:intron | 25.0% |
| !!! | TATTTTAGTGAAGTCAAGAA+GGG | + | chr1_3:52276346-52276365 | Msa0124490:intron | 25.0% |
| ! | TCATAAACAATGTCTATTAC+GGG | - | chr1_3:52276551-52276570 | None:intergenic | 25.0% |
| ! | GTCATAAACAATGTCTATTA+CGG | - | chr1_3:52276552-52276571 | None:intergenic | 25.0% |
| !!! | GATTGTTAACTTGTTGATTT+AGG | - | chr1_3:52276663-52276682 | None:intergenic | 25.0% |
| !! | ATAACCATTCCTTTTTATGT+AGG | + | chr1_3:52276957-52276976 | Msa0124490:intron | 25.0% |
| !! | TAACTTTTGCCTACATAAAA+AGG | - | chr1_3:52276969-52276988 | None:intergenic | 25.0% |
| !! | TTTTATGTAGGCAAAAGTTA+TGG | + | chr1_3:52276969-52276988 | Msa0124490:intron | 25.0% |
| ! | CATAACTTAATTACAACCAT+CGG | + | chr1_3:52277019-52277038 | Msa0124490:intron | 25.0% |
| ! | ATTACTAGAAGATGCTTATA+AGG | + | chr1_3:52277492-52277511 | Msa0124490:intron | 25.0% |
| ! | AAACTAGACAATAATTGCAA+AGG | - | chr1_3:52277563-52277582 | None:intergenic | 25.0% |
| ! | ATGGTTAATTCATGTTAAAG+CGG | + | chr1_3:52277687-52277706 | Msa0124490:intron | 25.0% |
| ! | AATTACGGTTACATGAAATT+AGG | + | chr1_3:52277725-52277744 | Msa0124490:intron | 25.0% |
| ! | ATTACGGTTACATGAAATTA+GGG | + | chr1_3:52277726-52277745 | Msa0124490:intron | 25.0% |
| ! | ATGAAATTAGGGTTAAAACT+TGG | + | chr1_3:52277737-52277756 | Msa0124490:intron | 25.0% |
| !! | AAACATTCATCTTTTGTTCT+TGG | - | chr1_3:52277906-52277925 | None:intergenic | 25.0% |
| ! | CAAAAGATGAATGTTTATGA+TGG | + | chr1_3:52277910-52277929 | Msa0124490:intron | 25.0% |
| !!! | TTTTAGGAATGAATATATGG+TGG | - | chr1_3:52278195-52278214 | None:intergenic | 25.0% |
| ! | TCATAAAATCTGTCTTATAC+AGG | - | chr1_3:52278564-52278583 | None:intergenic | 25.0% |
| !! | TGTATAAGACAGATTTTATG+AGG | + | chr1_3:52278563-52278582 | Msa0124490:intron | 25.0% |
| ! | CTCTTATATGAAATGAAGAA+AGG | - | chr1_3:52278629-52278648 | None:intergenic | 25.0% |
| ! | TTCATTTCATATAAGAGTGA+TGG | + | chr1_3:52278632-52278651 | Msa0124490:intron | 25.0% |
| ! | TCATTTCATATAAGAGTGAT+GGG | + | chr1_3:52278633-52278652 | Msa0124490:intron | 25.0% |
| ! | TTAACAATTTAAGCACAAAG+GGG | + | chr1_3:52278669-52278688 | Msa0124490:intron | 25.0% |
| ! | TTTCACAATAAAACAAGATG+TGG | + | chr1_3:52279040-52279059 | Msa0124490:intron | 25.0% |
| ! | TTCACAATAAAACAAGATGT+GGG | + | chr1_3:52279041-52279060 | Msa0124490:intron | 25.0% |
| !!! | TTGTTTTGTCTCTTCTTTAA+AGG | - | chr1_3:52279119-52279138 | None:intergenic | 25.0% |
| !! | TGCTTTTCTTTTGAATCATT+GGG | - | chr1_3:52279340-52279359 | None:intergenic | 25.0% |
| !!! | TTGCTTTTCTTTTGAATCAT+TGG | - | chr1_3:52279341-52279360 | None:intergenic | 25.0% |
| ! | ACAATTTATTGAGGTTCATA+AGG | + | chr1_3:52279453-52279472 | Msa0124490:intron | 25.0% |
| ! | TTAGGAAGCAAAAATTCAAT+GGG | + | chr1_3:52279795-52279814 | Msa0124490:intron | 25.0% |
| ! | TGATGCTTAATGAAATTCAT+AGG | + | chr1_3:52279852-52279871 | Msa0124490:intron | 25.0% |
| ! | GATGCTTAATGAAATTCATA+GGG | + | chr1_3:52279853-52279872 | Msa0124490:intron | 25.0% |
| ! | CATGTAAAAACAAGTATTCA+CGG | + | chr1_3:52280034-52280053 | Msa0124490:intron | 25.0% |
| ! | ATGTAAAAACAAGTATTCAC+GGG | + | chr1_3:52280035-52280054 | Msa0124490:intron | 25.0% |
| !!! | GAAATTTTTTGCAATGGAAT+GGG | - | chr1_3:52280317-52280336 | None:intergenic | 25.0% |
| !!! | TGAAATTTTTTGCAATGGAA+TGG | - | chr1_3:52280318-52280337 | None:intergenic | 25.0% |
| !!! | TTTGATTTGCTGAATATGTT+AGG | - | chr1_3:52280494-52280513 | None:intergenic | 25.0% |
| ! | TATGCATGTATTAAGGATTA+GGG | - | chr1_3:52280525-52280544 | None:intergenic | 25.0% |
| !!! | TGATGTTTTAGTAAGGTTTA+TGG | + | chr1_3:52280812-52280831 | Msa0124490:intron | 25.0% |
| !!! | GATGTTTTAGTAAGGTTTAT+GGG | + | chr1_3:52280813-52280832 | Msa0124490:intron | 25.0% |
| !! | TCAAGATTTTTGTGGTTTTT+GGG | + | chr1_3:52280854-52280873 | Msa0124490:intron | 25.0% |
| ! | AATGAAGTTTGTGAATGATT+TGG | + | chr1_3:52280959-52280978 | Msa0124490:intron | 25.0% |
| ! | ATGAAGTTTGTGAATGATTT+GGG | + | chr1_3:52280960-52280979 | Msa0124490:intron | 25.0% |
| ! | AAGAGAAAAATTGAGGTTAT+AGG | + | chr1_3:52281110-52281129 | Msa0124490:intron | 25.0% |
| !!! | CTTTGTTTTAAGTGTTTTGT+AGG | - | chr1_3:52281298-52281317 | None:intergenic | 25.0% |
| ! | AATAAAAGCAATTAAATGCG+TGG | + | chr1_3:52281330-52281349 | Msa0124490:intron | 25.0% |
| ! | ATAAAAGCAATTAAATGCGT+GGG | + | chr1_3:52281331-52281350 | Msa0124490:intron | 25.0% |
| ! | AAAAAATTCATTTCCCACAA+GGG | - | chr1_3:52281617-52281636 | None:intergenic | 25.0% |
| !!! | AAATGAATTTTTTGGTCATG+TGG | + | chr1_3:52281624-52281643 | Msa0124490:intron | 25.0% |
| !! | CAAACCCCTAAAAAAAATTT+TGG | - | chr1_3:52282088-52282107 | None:intergenic | 25.0% |
| ! | TGTCAGGATTATGAAATATT+TGG | - | chr1_3:52282214-52282233 | None:intergenic | 25.0% |
| ! | ATAATAAAATAAAGGAGCCT+TGG | + | chr1_3:52282643-52282662 | Msa0124490:intron | 25.0% |
| ! | TAATAAAATAAAGGAGCCTT+GGG | + | chr1_3:52282644-52282663 | Msa0124490:intron | 25.0% |
| ! | ATTACTAGAAGATGCTTATA+AGG | + | chr1_3:52277492-52277511 | Msa0124490:intron | 25.0% |
| ! | AAACTAGACAATAATTGCAA+AGG | - | chr1_3:52277563-52277582 | None:intergenic | 25.0% |
| ! | ATGGTTAATTCATGTTAAAG+CGG | + | chr1_3:52277687-52277706 | Msa0124490:intron | 25.0% |
| !! | AAACATTCATCTTTTGTTCT+TGG | - | chr1_3:52277906-52277925 | None:intergenic | 25.0% |
| !!! | TTTTAGGAATGAATATATGG+TGG | - | chr1_3:52278195-52278214 | None:intergenic | 25.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr1_3:52283981-52284000 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr1_3:52283983-52284002 | None:intergenic | 25.0% |
| ! | TTCCTAGAATAAAACCAAAA+AGG | + | chr1_3:52284099-52284118 | Msa0124490:intron | 25.0% |
| !!! | TGTTTTGGAATTTGAACTAT+TGG | + | chr1_3:52284174-52284193 | Msa0124490:intron | 25.0% |
| !!! | GTTTTGGAATTTGAACTATT+GGG | + | chr1_3:52284175-52284194 | Msa0124490:intron | 25.0% |
| !!! | ACTTCTTTATGCTGTTATTT+TGG | + | chr1_3:52284256-52284275 | Msa0124490:intron | 25.0% |
| ! | TTGAAGTTAATAGAGAGTTA+TGG | + | chr1_3:52284324-52284343 | Msa0124490:intron | 25.0% |
| !! | TGAAAATTTCTGTACTGTTT+TGG | + | chr1_3:52284619-52284638 | Msa0124490:intron | 25.0% |
| ! | TTATAAGGTCTAGATACATT+TGG | - | chr1_3:52284691-52284710 | None:intergenic | 25.0% |
| ! | AGTATATCAGCTGTTATAAT+TGG | + | chr1_3:52284759-52284778 | Msa0124490:intron | 25.0% |
| ! | TTCTCCATATATTTCAAACA+AGG | - | chr1_3:52284798-52284817 | None:intergenic | 25.0% |
| ! | TGGAGAAAAAAATATGGTTT+AGG | + | chr1_3:52284811-52284830 | Msa0124490:intron | 25.0% |
| ! | TATTATGCCTAATAAGAATC+TGG | + | chr1_3:52284928-52284947 | Msa0124490:intron | 25.0% |
| ! | AAACTAACCAGATTCTTATT+AGG | - | chr1_3:52284938-52284957 | None:intergenic | 25.0% |
| !!! | TCAAAATTAACCTTTGGTTT+TGG | - | chr1_3:52285072-52285091 | None:intergenic | 25.0% |
| !!! | TTAGTATTTTGGAAGGATTT+AGG | + | chr1_3:52285499-52285518 | Msa0124490:three_prime_UTR | 25.0% |
| !!! | TAGTATTTTGGAAGGATTTA+GGG | + | chr1_3:52285500-52285519 | Msa0124490:three_prime_UTR | 25.0% |
| ! | TGGATATCATAATTTGTCTC+AGG | - | chr1_3:52275776-52275795 | None:intergenic | 30.0% |
| TCTAGCTAATCAGCAAATAT+TGG | - | chr1_3:52276025-52276044 | None:intergenic | 30.0% | |
| ! | TGTCTACATAATTTTGTAGG+TGG | - | chr1_3:52276104-52276123 | None:intergenic | 30.0% |
| GAAGAGAAATGTCTTCTATT+TGG | - | chr1_3:52276239-52276258 | None:intergenic | 30.0% | |
| ATAGAAGACATTTCTCTTCA+TGG | + | chr1_3:52276240-52276259 | Msa0124490:intron | 30.0% | |
| !! | ATTTTAGTGAAGTCAAGAAG+GGG | + | chr1_3:52276347-52276366 | Msa0124490:intron | 30.0% |
| CATAAACAATGTCTATTACG+GGG | - | chr1_3:52276550-52276569 | None:intergenic | 30.0% | |
| ! | CACTGAAAAGAAAGTTTTTG+CGG | + | chr1_3:52276595-52276614 | Msa0124490:intron | 30.0% |
| !! | GTTAACTTGTTGATTTAGGA+AGG | - | chr1_3:52276659-52276678 | None:intergenic | 30.0% |
| AAAAAACTATCCACGAATGT+TGG | + | chr1_3:52276695-52276714 | Msa0124490:intron | 30.0% | |
| AATTAGAAGAAGTTCGTAAG+TGG | + | chr1_3:52276817-52276836 | Msa0124490:intron | 30.0% | |
| ! | AAAATGTACCTTTGAAGGAA+AGG | + | chr1_3:52276848-52276867 | Msa0124490:intron | 30.0% |
| GATCCATTTGAGTATATTCT+AGG | + | chr1_3:52276877-52276896 | Msa0124490:intron | 30.0% | |
| TCTCCTAGAATATACTCAAA+TGG | - | chr1_3:52276883-52276902 | None:intergenic | 30.0% | |
| AGCTACCTTATATTATGTTG+AGG | + | chr1_3:52276930-52276949 | Msa0124490:intron | 30.0% | |
| TTTGCCTACATAAAAAGGAA+TGG | - | chr1_3:52276964-52276983 | None:intergenic | 30.0% | |
| GGTTGTAATTAAGTTATGCA+TGG | - | chr1_3:52277017-52277036 | None:intergenic | 30.0% | |
| AATTACAACCATCGGATAAT+TGG | + | chr1_3:52277027-52277046 | Msa0124490:intron | 30.0% | |
| ! | GGCTTTAACTTCTAATTTCA+TGG | + | chr1_3:52277363-52277382 | Msa0124490:intron | 30.0% |
| ! | ACACCTTAATTTCTAAAGAC+CGG | + | chr1_3:52277389-52277408 | Msa0124490:intron | 30.0% |
| ! | AAACCGGTCTTTAGAAATTA+AGG | - | chr1_3:52277395-52277414 | None:intergenic | 30.0% |
| ATCAATTCATAATGCGAAAG+CGG | - | chr1_3:52277608-52277627 | None:intergenic | 30.0% | |
| TCGCATTATGAATTGATGTT+TGG | + | chr1_3:52277611-52277630 | Msa0124490:intron | 30.0% | |
| CGCATTATGAATTGATGTTT+GGG | + | chr1_3:52277612-52277631 | Msa0124490:intron | 30.0% | |
| AAAACTACAACAGAGTAACT+TGG | + | chr1_3:52277998-52278017 | Msa0124490:intron | 30.0% | |
| AAACTACAACAGAGTAACTT+GGG | + | chr1_3:52277999-52278018 | Msa0124490:intron | 30.0% | |
| AGTGCAAAAATACGAAGATA+CGG | - | chr1_3:52278131-52278150 | None:intergenic | 30.0% | |
| AAAACAACATGTCTCTTTGA+AGG | + | chr1_3:52278429-52278448 | Msa0124490:intron | 30.0% | |
| TCACAATTTCAAACATTCCT+CGG | + | chr1_3:52278472-52278491 | Msa0124490:intron | 30.0% | |
| CTCACTTAATACTTGATGTT+GGG | - | chr1_3:52278510-52278529 | None:intergenic | 30.0% | |
| ACTCACTTAATACTTGATGT+TGG | - | chr1_3:52278511-52278530 | None:intergenic | 30.0% | |
| ! | AATGAAGAAAGGACTTTTCT+CGG | - | chr1_3:52278618-52278637 | None:intergenic | 30.0% |
| TGAACTTAACAATTAGGGAA+AGG | - | chr1_3:52278751-52278770 | None:intergenic | 30.0% | |
| TTGTTAAAGTTAAATGGGGA+GGG | - | chr1_3:52278843-52278862 | None:intergenic | 30.0% | |
| ATTGTTAAAGTTAAATGGGG+AGG | - | chr1_3:52278844-52278863 | None:intergenic | 30.0% | |
| AAAGTAGTATACGTTTGTGT+GGG | - | chr1_3:52278904-52278923 | None:intergenic | 30.0% | |
| AAAAGTAGTATACGTTTGTG+TGG | - | chr1_3:52278905-52278924 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTGTACATGAAAG+TGG | - | chr1_3:52279096-52279115 | None:intergenic | 30.0% |
| !! | TGTTTCGTTTTTATAGCGAA+AGG | - | chr1_3:52279190-52279209 | None:intergenic | 30.0% |
| ! | GCTTTTCTTTTGAATCATTG+GGG | - | chr1_3:52279339-52279358 | None:intergenic | 30.0% |
| ATTTATTGAGGTTCATAAGG+AGG | + | chr1_3:52279456-52279475 | Msa0124490:intron | 30.0% | |
| AAAACAATGAAATGCTCTGA+AGG | - | chr1_3:52279509-52279528 | None:intergenic | 30.0% | |
| !! | GCTATATGTTGATAATGAAC+AGG | - | chr1_3:52279739-52279758 | None:intergenic | 30.0% |
| GTTAGGAAGCAAAAATTCAA+TGG | + | chr1_3:52279794-52279813 | Msa0124490:intron | 30.0% | |
| TAATCTTGTAGCTGATATAG+TGG | - | chr1_3:52279982-52280001 | None:intergenic | 30.0% | |
| ACTATATCAGCTACAAGATT+AGG | + | chr1_3:52279981-52280000 | Msa0124490:intron | 30.0% | |
| AGATGAACTCTTTATGCTTT+GGG | - | chr1_3:52280078-52280097 | None:intergenic | 30.0% | |
| ! | AGTAATGACTTGTACCATTT+GGG | - | chr1_3:52280129-52280148 | None:intergenic | 30.0% |
| TACAAGTCATTACTCTTTGA+AGG | + | chr1_3:52280135-52280154 | Msa0124490:intron | 30.0% | |
| ATCAATATTCAAAAGCCAGA+AGG | + | chr1_3:52280352-52280371 | Msa0124490:intron | 30.0% | |
| TTTGCTGAATATGTTAGGAT+GGG | - | chr1_3:52280489-52280508 | None:intergenic | 30.0% | |
| ! | ATTTGCTGAATATGTTAGGA+TGG | - | chr1_3:52280490-52280509 | None:intergenic | 30.0% |
| CTATGCATGTATTAAGGATT+AGG | - | chr1_3:52280526-52280545 | None:intergenic | 30.0% | |
| CTCATTCTATGCATGTATTA+AGG | - | chr1_3:52280532-52280551 | None:intergenic | 30.0% | |
| !! | TACTTTATACCTAGCCTTTT+GGG | + | chr1_3:52280592-52280611 | Msa0124490:intron | 30.0% |
| ! | GTCAAGATTTTTGTGGTTTT+TGG | + | chr1_3:52280853-52280872 | Msa0124490:intron | 30.0% |
| !!! | ATTTTTGTGGTTTTTGGGTT+AGG | + | chr1_3:52280859-52280878 | Msa0124490:intron | 30.0% |
| !!! | TTTTTGTGGTTTTTGGGTTA+GGG | + | chr1_3:52280860-52280879 | Msa0124490:intron | 30.0% |
| !! | ATAAGGGTTTGGTGAATTAT+GGG | + | chr1_3:52280892-52280911 | Msa0124490:intron | 30.0% |
| !!! | GGATGAAAGTTGTTTTTGAT+TGG | + | chr1_3:52280922-52280941 | Msa0124490:intron | 30.0% |
| !!! | TGAAAGTTGTTTTTGATTGG+TGG | + | chr1_3:52280925-52280944 | Msa0124490:intron | 30.0% |
| TGAAGTTTGTGAATGATTTG+GGG | + | chr1_3:52280961-52280980 | Msa0124490:intron | 30.0% | |
| !! | GAGTTTTGATGAAGATATGA+AGG | + | chr1_3:52281005-52281024 | Msa0124490:intron | 30.0% |
| !! | GTTTTTAGAGAGATGTTTGA+AGG | + | chr1_3:52281051-52281070 | Msa0124490:intron | 30.0% |
| GAAGAAGAAGAGAAAAATTG+AGG | + | chr1_3:52281103-52281122 | Msa0124490:intron | 30.0% | |
| AGAAAAATTGAGGTTATAGG+AGG | + | chr1_3:52281113-52281132 | Msa0124490:intron | 30.0% | |
| ! | TTTTCCATACCATATGTCAT+AGG | - | chr1_3:52281504-52281523 | None:intergenic | 30.0% |
| CAAAAAATTCATTTCCCACA+AGG | - | chr1_3:52281618-52281637 | None:intergenic | 30.0% | |
| !!! | CTTGTGGGAAATGAATTTTT+TGG | + | chr1_3:52281616-52281635 | Msa0124490:intron | 30.0% |
| ! | CCAAGAAAATTAAGGTTTTG+AGG | - | chr1_3:52281715-52281734 | None:intergenic | 30.0% |
| ! | CCTCAAAACCTTAATTTTCT+TGG | + | chr1_3:52281712-52281731 | Msa0124490:intron | 30.0% |
| TGTGGAAACCAAGAAAATTA+AGG | - | chr1_3:52281723-52281742 | None:intergenic | 30.0% | |
| ! | AATTTTCTTGGTTTCCACAA+CGG | + | chr1_3:52281724-52281743 | Msa0124490:intron | 30.0% |
| GATAAATGCTATTACACCTA+GGG | - | chr1_3:52281771-52281790 | None:intergenic | 30.0% | |
| CTAGGTGTAATAGCATTTAT+CGG | + | chr1_3:52281770-52281789 | Msa0124490:intron | 30.0% | |
| TAGGTGTAATAGCATTTATC+GGG | + | chr1_3:52281771-52281790 | Msa0124490:intron | 30.0% | |
| ! | TTTTGAATGACTCTCTCAAT+AGG | - | chr1_3:52281934-52281953 | None:intergenic | 30.0% |
| TTCTATCAAAAGTTCCAAGT+CGG | + | chr1_3:52282009-52282028 | Msa0124490:intron | 30.0% | |
| CTCAATTTAATCAAGGGTTT+AGG | - | chr1_3:52282129-52282148 | None:intergenic | 30.0% | |
| TTGAGTATAGTTTACTTGCT+CGG | + | chr1_3:52282144-52282163 | Msa0124490:intron | 30.0% | |
| !!! | TCTCTAACTGTTTTGATTTC+AGG | - | chr1_3:52282286-52282305 | None:intergenic | 30.0% |
| GAGAGAAAAGGAAAAGAAAA+AGG | + | chr1_3:52282377-52282396 | Msa0124490:intron | 30.0% | |
| ! | GGCTTTAACTTCTAATTTCA+TGG | + | chr1_3:52277363-52277382 | Msa0124490:intron | 30.0% |
| ! | ACACCTTAATTTCTAAAGAC+CGG | + | chr1_3:52277389-52277408 | Msa0124490:intron | 30.0% |
| ! | AAACCGGTCTTTAGAAATTA+AGG | - | chr1_3:52277395-52277414 | None:intergenic | 30.0% |
| ATCAATTCATAATGCGAAAG+CGG | - | chr1_3:52277608-52277627 | None:intergenic | 30.0% | |
| CGCATTATGAATTGATGTTT+CGG | + | chr1_3:52277612-52277631 | Msa0124490:intron | 30.0% | |
| ATGAAATTAGGGTTAAAGCT+TGG | + | chr1_3:52283081-52283100 | Msa0124490:intron | 30.0% | |
| CAAAAGATGAATGTTTATGC+TGG | + | chr1_3:52283254-52283273 | Msa0124490:intron | 30.0% | |
| AAAACTACAACAGAGTAACT+TGG | + | chr1_3:52277998-52278017 | Msa0124490:intron | 30.0% | |
| AAACTACAACAGAGTAACTT+GGG | + | chr1_3:52277999-52278018 | Msa0124490:intron | 30.0% | |
| GACAAAAATATGTCTCCAAA+AGG | - | chr1_3:52283451-52283470 | None:intergenic | 30.0% | |
| AGTGCAAAAATACGAAGATA+CGG | - | chr1_3:52278131-52278150 | None:intergenic | 30.0% | |
| AACGGAAAACAAATCAGTTA+CGG | - | chr1_3:52283798-52283817 | None:intergenic | 30.0% | |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr1_3:52283971-52283990 | Msa0124490:intron | 30.0% |
| !! | TTAGGTTTTCGTTGTTGTTA+TGG | + | chr1_3:52284064-52284083 | Msa0124490:intron | 30.0% |
| !! | TAGGTTTTCGTTGTTGTTAT+GGG | + | chr1_3:52284065-52284084 | Msa0124490:intron | 30.0% |
| !!! | CACCTTTTTGGTTTTATTCT+AGG | - | chr1_3:52284104-52284123 | None:intergenic | 30.0% |
| CTAGAATAAAACCAAAAAGG+TGG | + | chr1_3:52284102-52284121 | Msa0124490:intron | 30.0% | |
| !! | TGGATTTGAAGAGTGTTAAA+TGG | + | chr1_3:52284132-52284151 | Msa0124490:intron | 30.0% |
| !! | GGATTTGAAGAGTGTTAAAT+GGG | + | chr1_3:52284133-52284152 | Msa0124490:intron | 30.0% |
| !! | GATTTGAAGAGTGTTAAATG+GGG | + | chr1_3:52284134-52284153 | Msa0124490:intron | 30.0% |
| !!! | TGCTGTTATTTTGGTTGTTT+TGG | + | chr1_3:52284265-52284284 | Msa0124490:intron | 30.0% |
| !!! | GCTGTTATTTTGGTTGTTTT+GGG | + | chr1_3:52284266-52284285 | Msa0124490:intron | 30.0% |
| ! | TGCATCAGCTTTATCAAATA+TGG | + | chr1_3:52284415-52284434 | Msa0124490:intron | 30.0% |
| ! | GCATCAGCTTTATCAAATAT+GGG | + | chr1_3:52284416-52284435 | Msa0124490:intron | 30.0% |
| TTCCTGATTTCTTTGCTAAA+AGG | + | chr1_3:52284504-52284523 | Msa0124490:intron | 30.0% | |
| GAGAACAAAATACCAATAAG+AGG | - | chr1_3:52284545-52284564 | None:intergenic | 30.0% | |
| ! | TTGTAGCATTTGTTAAGTTG+AGG | + | chr1_3:52284656-52284675 | Msa0124490:intron | 30.0% |
| AGACCTTATAAAATACCTGT+TGG | + | chr1_3:52284700-52284719 | Msa0124490:intron | 30.0% | |
| GACCTTATAAAATACCTGTT+GGG | + | chr1_3:52284701-52284720 | Msa0124490:intron | 30.0% | |
| ! | TTCCCAACAGGTATTTTATA+AGG | - | chr1_3:52284706-52284725 | None:intergenic | 30.0% |
| AAAATACCTGTTGGGAAAAT+TGG | + | chr1_3:52284709-52284728 | Msa0124490:intron | 30.0% | |
| TATAACAGCTGATATACTGT+TGG | - | chr1_3:52284757-52284776 | None:intergenic | 30.0% | |
| GATTATGTAGTGTACTTTCA+TGG | - | chr1_3:52285007-52285026 | None:intergenic | 30.0% | |
| ! | TGAAAGTACACTACATAATC+TGG | + | chr1_3:52285007-52285026 | Msa0124490:intron | 30.0% |
| TGAAATCTTGAGCAATTTCA+TGG | - | chr1_3:52285173-52285192 | None:intergenic | 30.0% | |
| TGAAATTGCTCAAGATTTCA+AGG | + | chr1_3:52285173-52285192 | Msa0124490:CDS | 30.0% | |
| ! | TTGTCAACATTATCGGTGTT+TGG | + | chr1_3:52275835-52275854 | Msa0124490:intron | 35.0% |
| ACATACTAACAACAACTACG+TGG | - | chr1_3:52275863-52275882 | None:intergenic | 35.0% | |
| ! | ACGTAGTTGTTGTTAGTATG+TGG | + | chr1_3:52275862-52275881 | Msa0124490:intron | 35.0% |
| ! | TTGTTGTTAGTATGTGGAAC+AGG | + | chr1_3:52275868-52275887 | Msa0124490:intron | 35.0% |
| TGTTGTTAGTATGTGGAACA+GGG | + | chr1_3:52275869-52275888 | Msa0124490:intron | 35.0% | |
| TAATCGTAACCATGGTGATA+AGG | + | chr1_3:52275910-52275929 | Msa0124490:intron | 35.0% | |
| GTTACTTATCCTTATCACCA+TGG | - | chr1_3:52275922-52275941 | None:intergenic | 35.0% | |
| ! | GAGTTGAACCAGAATGATTT+TGG | + | chr1_3:52275962-52275981 | Msa0124490:intron | 35.0% |
| GACTATGACCAAAATCATTC+TGG | - | chr1_3:52275973-52275992 | None:intergenic | 35.0% | |
| !!! | GTCATTTTTAGGCTTTGATG+TGG | + | chr1_3:52275990-52276009 | Msa0124490:intron | 35.0% |
| ! | CTGATTAGCTAGACTCTTTA+CGG | + | chr1_3:52276032-52276051 | Msa0124490:intron | 35.0% |
| ! | GACATTCCTGTACTTTAAAG+CGG | + | chr1_3:52276427-52276446 | Msa0124490:intron | 35.0% |
| AAGTCATGTGAAAGTGAAAG+TGG | + | chr1_3:52276471-52276490 | Msa0124490:intron | 35.0% | |
| CACAAACACTTGTGTGTTAT+AGG | + | chr1_3:52276571-52276590 | Msa0124490:intron | 35.0% | |
| GGAAAAATTTCCAACATTCG+TGG | - | chr1_3:52276708-52276727 | None:intergenic | 35.0% | |
| !! | ACCACTCTAAAGTGATGTAT+TGG | - | chr1_3:52276737-52276756 | None:intergenic | 35.0% |
| ! | TATATTCTAGGAGACCGTTA+AGG | + | chr1_3:52276889-52276908 | Msa0124490:intron | 35.0% |
| ATTCTCTTACTCGTCCTTAA+CGG | - | chr1_3:52276906-52276925 | None:intergenic | 35.0% | |
| TATGCATGGTGCATAAGTTA+TGG | - | chr1_3:52277003-52277022 | None:intergenic | 35.0% | |
| ! | TTAAAGCCTTGTCTAGTGAA+GGG | - | chr1_3:52277351-52277370 | None:intergenic | 35.0% |
| TACTATGGGTAAACTTTCAC+CGG | - | chr1_3:52277449-52277468 | None:intergenic | 35.0% | |
| ! | GAAATAGGCTTGGTTACTAT+GGG | - | chr1_3:52277463-52277482 | None:intergenic | 35.0% |
| AGTAATCAAGTCAGCGAAAT+AGG | - | chr1_3:52277478-52277497 | None:intergenic | 35.0% | |
| ! | TGAATTGATGTTTGGGATGA+TGG | + | chr1_3:52277619-52277638 | Msa0124490:intron | 35.0% |
| TCGCTTCTACAGTTTGATAA+TGG | + | chr1_3:52277668-52277687 | Msa0124490:intron | 35.0% | |
| ! | GGTTAAAACTTGGTTCGATT+AGG | + | chr1_3:52277747-52277766 | Msa0124490:intron | 35.0% |
| TCTTCTTGTCTTGGGATTAT+TGG | - | chr1_3:52277792-52277811 | None:intergenic | 35.0% | |
| CATTGTAGACATAGAGAAGA+AGG | + | chr1_3:52277829-52277848 | Msa0124490:intron | 35.0% | |
| ! | AGGAATGAATATATGGTGGA+AGG | - | chr1_3:52278191-52278210 | None:intergenic | 35.0% |
| ACAAGCAAAGATTCAAGTGT+GGG | - | chr1_3:52278348-52278367 | None:intergenic | 35.0% | |
| CACAATTTCAAACATTCCTC+GGG | + | chr1_3:52278473-52278492 | Msa0124490:intron | 35.0% | |
| !! | TACTTGATGTTGGGTTGAAT+AGG | - | chr1_3:52278501-52278520 | None:intergenic | 35.0% |
| CTTATACAGGAGCAAGAAAA+AGG | - | chr1_3:52278551-52278570 | None:intergenic | 35.0% | |
| ! | TCTCGGTTACTTTAGCATTA+AGG | - | chr1_3:52278601-52278620 | None:intergenic | 35.0% |
| ! | ATCCTCATAGGAAGTCTTTT+TGG | + | chr1_3:52278715-52278734 | Msa0124490:intron | 35.0% |
| ATCCAAAAAGACTTCCTATG+AGG | - | chr1_3:52278720-52278739 | None:intergenic | 35.0% | |
| AATCCCTAACTTCCTAATTG+TGG | - | chr1_3:52278790-52278809 | None:intergenic | 35.0% | |
| GTGTATGAGTAGGTATTTGA+AGG | - | chr1_3:52278978-52278997 | None:intergenic | 35.0% | |
| ACTTGCTCAAAGATTGCAAT+TGG | + | chr1_3:52278996-52279015 | Msa0124490:intron | 35.0% | |
| CTTGCTCAAAGATTGCAATT+GGG | + | chr1_3:52278997-52279016 | Msa0124490:intron | 35.0% | |
| GCAAGAACACAAAAAACACA+AGG | + | chr1_3:52279068-52279087 | Msa0124490:intron | 35.0% | |
| GAATAAAGTTCAAGGGAGTT+TGG | + | chr1_3:52279213-52279232 | Msa0124490:intron | 35.0% | |
| GAAGAAGTAGAAGAAAGAGT+AGG | + | chr1_3:52279377-52279396 | Msa0124490:intron | 35.0% | |
| GGAAAGCTCACAATTTATTG+AGG | + | chr1_3:52279444-52279463 | Msa0124490:intron | 35.0% | |
| CTAAGAAATGAAGTCCAAAG+GGG | - | chr1_3:52279549-52279568 | None:intergenic | 35.0% | |
| GCTAAGAAATGAAGTCCAAA+GGG | - | chr1_3:52279550-52279569 | None:intergenic | 35.0% | |
| AGCTAAATGACGATCAAAGA+TGG | - | chr1_3:52279641-52279660 | None:intergenic | 35.0% | |
| ! | TAGCAAATTTTCTTCCACCT+CGG | + | chr1_3:52279755-52279774 | Msa0124490:intron | 35.0% |
| ! | TTTTGCTTCCTAACCTATCT+CGG | - | chr1_3:52279788-52279807 | None:intergenic | 35.0% |
| AGTGTAAGGTCATATTGCAA+AGG | + | chr1_3:52279825-52279844 | Msa0124490:intron | 35.0% | |
| ATCAAATTGAGGGCAACAAT+AGG | - | chr1_3:52279899-52279918 | None:intergenic | 35.0% | |
| GAGGGGATAAATCAAATTGA+GGG | - | chr1_3:52279909-52279928 | None:intergenic | 35.0% | |
| GTGTGATTACATTCATTGCT+GGG | - | chr1_3:52279953-52279972 | None:intergenic | 35.0% | |
| ATTAGGCTTAGTTCCTATTG+AGG | + | chr1_3:52279998-52280017 | Msa0124490:intron | 35.0% | |
| CAGATGAACTCTTTATGCTT+TGG | - | chr1_3:52280079-52280098 | None:intergenic | 35.0% | |
| ! | GTAATGACTTGTACCATTTG+GGG | - | chr1_3:52280128-52280147 | None:intergenic | 35.0% |
| ! | GAGTAATGACTTGTACCATT+TGG | - | chr1_3:52280130-52280149 | None:intergenic | 35.0% |
| ! | GTGAATGTTAATAGCCTTGA+TGG | + | chr1_3:52280175-52280194 | Msa0124490:intron | 35.0% |
| ATATGTTTCACGTTCCATCA+AGG | - | chr1_3:52280192-52280211 | None:intergenic | 35.0% | |
| !!! | ATTATAACCCTGCTAGCTTT+TGG | - | chr1_3:52280238-52280257 | None:intergenic | 35.0% |
| CTAGCAGGGTTATAATATTC+CGG | + | chr1_3:52280242-52280261 | Msa0124490:intron | 35.0% | |
| TTGCTGAATATGTTAGGATG+GGG | - | chr1_3:52280488-52280507 | None:intergenic | 35.0% | |
| !! | GTACTTTATACCTAGCCTTT+TGG | + | chr1_3:52280591-52280610 | Msa0124490:intron | 35.0% |
| AAAACTCAAAAGTCAACCCA+AGG | - | chr1_3:52280735-52280754 | None:intergenic | 35.0% | |
| !!! | TTGGGTTGACTTTTGAGTTT+TGG | + | chr1_3:52280734-52280753 | Msa0124490:intron | 35.0% |
| !!! | TGACTTTTGAGTTTTGGTGA+AGG | + | chr1_3:52280740-52280759 | Msa0124490:intron | 35.0% |
| !! | TTTGAGTTTTGGTGAAGGTT+AGG | + | chr1_3:52280745-52280764 | Msa0124490:intron | 35.0% |
| !! | TTGAGTTTTGGTGAAGGTTA+GGG | + | chr1_3:52280746-52280765 | Msa0124490:intron | 35.0% |
| ! | TGGGAAGAATTTTGTGGAAA+AGG | + | chr1_3:52280771-52280790 | Msa0124490:intron | 35.0% |
| ! | GGGAAGAATTTTGTGGAAAA+GGG | + | chr1_3:52280772-52280791 | Msa0124490:intron | 35.0% |
| !!! | TTGGGGTTGATGTTTTAGTA+AGG | + | chr1_3:52280805-52280824 | Msa0124490:intron | 35.0% |
| AAGGTTTATGGGTTTAGATG+TGG | + | chr1_3:52280824-52280843 | Msa0124490:intron | 35.0% | |
| !! | GAGATTGGTCAAGATTTTTG+TGG | + | chr1_3:52280846-52280865 | Msa0124490:intron | 35.0% |
| GTTAGGGTTTATGGAGATAA+GGG | + | chr1_3:52280876-52280895 | Msa0124490:intron | 35.0% | |
| !! | GATAAGGGTTTGGTGAATTA+TGG | + | chr1_3:52280891-52280910 | Msa0124490:intron | 35.0% |
| GATTTGGGGAAGAATTGAAT+TGG | + | chr1_3:52280975-52280994 | Msa0124490:intron | 35.0% | |
| !! | GAAGAATTGAATTGGTTTGG+TGG | + | chr1_3:52280983-52281002 | Msa0124490:intron | 35.0% |
| GATGAAGATATGAAGGTTTG+AGG | + | chr1_3:52281012-52281031 | Msa0124490:intron | 35.0% | |
| ! | TATGAAGGTTTGAGGTTTGA+TGG | + | chr1_3:52281020-52281039 | Msa0124490:intron | 35.0% |
| AGTTCTTCTTGAATCACACT+CGG | + | chr1_3:52281265-52281284 | Msa0124490:intron | 35.0% | |
| TATGGTATGGAAAAACTCTC+TGG | + | chr1_3:52281510-52281529 | Msa0124490:intron | 35.0% | |
| !!! | TGAATTTTTTGGTCATGTGG+TGG | + | chr1_3:52281627-52281646 | Msa0124490:intron | 35.0% |
| GAGAAAGTTGTAGTAGAAAG+TGG | - | chr1_3:52281669-52281688 | None:intergenic | 35.0% | |
| ACTACAACTTTCTCACTTTG+TGG | + | chr1_3:52281675-52281694 | Msa0124490:intron | 35.0% | |
| ! | ATTTTCTTGGTTTCCACAAC+GGG | + | chr1_3:52281725-52281744 | Msa0124490:intron | 35.0% |
| CGATAAATGCTATTACACCT+AGG | - | chr1_3:52281772-52281791 | None:intergenic | 35.0% | |
| ! | AATAGCATTTATCGGGCTTT+TGG | + | chr1_3:52281778-52281797 | Msa0124490:intron | 35.0% |
| ! | ATAGCATTTATCGGGCTTTT+GGG | + | chr1_3:52281779-52281798 | Msa0124490:intron | 35.0% |
| !! | AGAAAGAGAATCCACTTTTG+CGG | + | chr1_3:52281904-52281923 | Msa0124490:intron | 35.0% |
| ! | CAAGAGTTTAAAGTCAAAGC+TGG | - | chr1_3:52281959-52281978 | None:intergenic | 35.0% |
| ! | CAGCTTTGACTTTAAACTCT+TGG | + | chr1_3:52281957-52281976 | Msa0124490:intron | 35.0% |
| TGAGTATAGTTTACTTGCTC+GGG | + | chr1_3:52282145-52282164 | Msa0124490:intron | 35.0% | |
| ATTTCATAATCCTGACAAGC+TGG | + | chr1_3:52282217-52282236 | Msa0124490:intron | 35.0% | |
| GGAAAAAGGTCCATTGATAA+AGG | + | chr1_3:52282248-52282267 | Msa0124490:intron | 35.0% | |
| TGGCTCAAAACCTTTATCAA+TGG | - | chr1_3:52282261-52282280 | None:intergenic | 35.0% | |
| !!! | AACTGTTTTGATTTCAGGCA+TGG | - | chr1_3:52282281-52282300 | None:intergenic | 35.0% |
| ATCAAATTACAACAACTCCC+CGG | + | chr1_3:52282445-52282464 | Msa0124490:intron | 35.0% | |
| ! | TTAAAGCCTTGTCTAGTGAA+GGG | - | chr1_3:52277351-52277370 | None:intergenic | 35.0% |
| ! | GAAATAGGCTTGGTAACTAT+GGG | - | chr1_3:52282807-52282826 | None:intergenic | 35.0% |
| AGTAATCAAGTCAGCGAAAT+AGG | - | chr1_3:52277478-52277497 | None:intergenic | 35.0% | |
| TGAATTGATGTTTCGGATGA+TGG | + | chr1_3:52282963-52282982 | Msa0124490:intron | 35.0% | |
| TCGCTTCTACAGTTTGATAA+TGG | + | chr1_3:52277668-52277687 | Msa0124490:intron | 35.0% | |
| TCTTCTTGTCTTGGGATTAT+TGG | - | chr1_3:52277792-52277811 | None:intergenic | 35.0% | |
| CATTGTAGACATAGAGAAGA+AGG | + | chr1_3:52277829-52277848 | Msa0124490:intron | 35.0% | |
| AAAAGGTCAAAAGTTTGGCA+CGG | - | chr1_3:52283434-52283453 | None:intergenic | 35.0% | |
| TCTCCAAAAGGTCAAAAGTT+TGG | - | chr1_3:52283439-52283458 | None:intergenic | 35.0% | |
| ! | AGGAATGAATATATGGTGGA+AGG | - | chr1_3:52278191-52278210 | None:intergenic | 35.0% |
| ! | TTTTCCGTTTTCTCGATGTT+AGG | + | chr1_3:52283809-52283828 | Msa0124490:intron | 35.0% |
| ! | TTTCCGTTTTCTCGATGTTA+GGG | + | chr1_3:52283810-52283829 | Msa0124490:intron | 35.0% |
| AAACCCTAACATCGAGAAAA+CGG | - | chr1_3:52283816-52283835 | None:intergenic | 35.0% | |
| !!! | TTTCATCGCTTTTTTCGTTC+AGG | + | chr1_3:52283866-52283885 | Msa0124490:intron | 35.0% |
| !! | AGGTTTTCGTTGTTGTTATG+GGG | + | chr1_3:52284066-52284085 | Msa0124490:intron | 35.0% |
| !!! | ACAGCATAAAGAAGTGCTTT+TGG | - | chr1_3:52284251-52284270 | None:intergenic | 35.0% |
| !! | TACTTTTTACCGCTTTTGGT+TGG | + | chr1_3:52284290-52284309 | Msa0124490:intron | 35.0% |
| AATAGAGAGTTATGGAGTGA+TGG | + | chr1_3:52284332-52284351 | Msa0124490:intron | 35.0% | |
| !!! | GATGGTTACTTTTCAGAAGT+TGG | + | chr1_3:52284350-52284369 | Msa0124490:intron | 35.0% |
| !! | GAAGTTGGTAGAGTTATTGT+AGG | + | chr1_3:52284365-52284384 | Msa0124490:intron | 35.0% |
| GTAGAGTTATTGTAGGTGTT+TGG | + | chr1_3:52284372-52284391 | Msa0124490:intron | 35.0% | |
| TAGGTGTTTGGTTAAGAACA+TGG | + | chr1_3:52284384-52284403 | Msa0124490:intron | 35.0% | |
| AGGTGTTTGGTTAAGAACAT+GGG | + | chr1_3:52284385-52284404 | Msa0124490:intron | 35.0% | |
| ! | GACCTTTTAGCAAAGAAATC+AGG | - | chr1_3:52284509-52284528 | None:intergenic | 35.0% |
| TTTGCTAAAAGGTCACGTTA+TGG | + | chr1_3:52284515-52284534 | Msa0124490:intron | 35.0% | |
| !!! | GTACTGTTTTGGTATGCTTA+TGG | + | chr1_3:52284630-52284649 | Msa0124490:intron | 35.0% |
| !! | GCAGCCTTGTTTGAAATATA+TGG | + | chr1_3:52284791-52284810 | Msa0124490:intron | 35.0% |
| GCATAAATATCTGGAAGATC+AGG | - | chr1_3:52284849-52284868 | None:intergenic | 35.0% | |
| TTCTAGGCAGCATAAATATC+TGG | - | chr1_3:52284858-52284877 | None:intergenic | 35.0% | |
| TATGTAGTGTACTTTCATGG+AGG | - | chr1_3:52285004-52285023 | None:intergenic | 35.0% | |
| AATTGTGACTCCAAAACCAA+AGG | + | chr1_3:52285059-52285078 | Msa0124490:intron | 35.0% | |
| TGTGAAATCTTGTTCCTCTT+TGG | + | chr1_3:52285230-52285249 | Msa0124490:intron | 35.0% | |
| AGCATGAATTGCACACATAT+TGG | - | chr1_3:52285381-52285400 | None:intergenic | 35.0% | |
| !!! | TGAAGGTGCTTTTAAGGTTA+TGG | + | chr1_3:52285472-52285491 | Msa0124490:three_prime_UTR | 35.0% |
| !!! | GTTATGGCGGATTAGTATTT+TGG | + | chr1_3:52285488-52285507 | Msa0124490:three_prime_UTR | 35.0% |
| ! | TCCTCCACCATATGCAATTT+TGG | + | chr1_3:52275647-52275666 | Msa0124490:intron | 40.0% |
| CTTGCCAAAATTGCATATGG+TGG | - | chr1_3:52275654-52275673 | None:intergenic | 40.0% | |
| !! | CACCATATGCAATTTTGGCA+AGG | + | chr1_3:52275652-52275671 | Msa0124490:intron | 40.0% |
| AGCCTTGCCAAAATTGCATA+TGG | - | chr1_3:52275657-52275676 | None:intergenic | 40.0% | |
| AGGAATGTCAAAGATCGTTG+GGG | - | chr1_3:52276416-52276435 | None:intergenic | 40.0% | |
| CAGGAATGTCAAAGATCGTT+GGG | - | chr1_3:52276417-52276436 | None:intergenic | 40.0% | |
| ACAGGAATGTCAAAGATCGT+TGG | - | chr1_3:52276418-52276437 | None:intergenic | 40.0% | |
| !! | GACATACCGCTTTAAAGTAC+AGG | - | chr1_3:52276436-52276455 | None:intergenic | 40.0% |
| CAATGTCTATTACGGGGTTT+AGG | - | chr1_3:52276544-52276563 | None:intergenic | 40.0% | |
| ! | AAAGTGATGTATTGGCGTGT+TGG | - | chr1_3:52276729-52276748 | None:intergenic | 40.0% |
| ! | GCCAATACATCACTTTAGAG+TGG | + | chr1_3:52276733-52276752 | Msa0124490:intron | 40.0% |
| ! | ATGTACCTTTGAAGGAAAGG+TGG | + | chr1_3:52276851-52276870 | Msa0124490:intron | 40.0% |
| TCTATCCACCTTTCCTTCAA+AGG | - | chr1_3:52276859-52276878 | None:intergenic | 40.0% | |
| ACAAGTGTCCAATTATCCGA+TGG | - | chr1_3:52277038-52277057 | None:intergenic | 40.0% | |
| GGACACTTGTAATGATCCTA+TGG | + | chr1_3:52277048-52277067 | Msa0124490:intron | 40.0% | |
| ATGAGGTAGGAGAAGATTGT+GGG | - | chr1_3:52277101-52277120 | None:intergenic | 40.0% | |
| TATGAGGTAGGAGAAGATTG+TGG | - | chr1_3:52277102-52277121 | None:intergenic | 40.0% | |
| ! | AAGGTTGAGTTGTATGAGGT+AGG | - | chr1_3:52277114-52277133 | None:intergenic | 40.0% |
| TTGAATTCACAACTCCCTAG+CGG | - | chr1_3:52277206-52277225 | None:intergenic | 40.0% | |
| !! | TAAAGGAGCATTGGGATCAT+TGG | + | chr1_3:52277308-52277327 | Msa0124490:intron | 40.0% |
| AACAAACCCTTCACTAGACA+AGG | + | chr1_3:52277342-52277361 | Msa0124490:intron | 40.0% | |
| ! | GTTAAAGCCTTGTCTAGTGA+AGG | - | chr1_3:52277352-52277371 | None:intergenic | 40.0% |
| AACTTTCACCGGACTTTCAT+CGG | - | chr1_3:52277438-52277457 | None:intergenic | 40.0% | |
| ! | CGAAATAGGCTTGGTTACTA+TGG | - | chr1_3:52277464-52277483 | None:intergenic | 40.0% |
| ACTGTAGAAGCGAAAGTGAA+GGG | - | chr1_3:52277661-52277680 | None:intergenic | 40.0% | |
| AACTGTAGAAGCGAAAGTGA+AGG | - | chr1_3:52277662-52277681 | None:intergenic | 40.0% | |
| GAGTAGACTCTTCTTGTCTT+GGG | - | chr1_3:52277800-52277819 | None:intergenic | 40.0% | |
| TGAGTAGACTCTTCTTGTCT+TGG | - | chr1_3:52277801-52277820 | None:intergenic | 40.0% | |
| !!! | CTCTTTTGCTGCTTTTCTTC+AGG | - | chr1_3:52278025-52278044 | None:intergenic | 40.0% |
| AAAGCAGCAAAAGAGACTTC+TGG | + | chr1_3:52278030-52278049 | Msa0124490:intron | 40.0% | |
| TGTCTTGGAGCAAAAGAAAG+AGG | - | chr1_3:52278168-52278187 | None:intergenic | 40.0% | |
| !! | ATATATGGTGGAAGGTGTCT+TGG | - | chr1_3:52278183-52278202 | None:intergenic | 40.0% |
| AAGCAAAGATTCAAGTGTGG+GGG | - | chr1_3:52278346-52278365 | None:intergenic | 40.0% | |
| CAAGCAAAGATTCAAGTGTG+GGG | - | chr1_3:52278347-52278366 | None:intergenic | 40.0% | |
| GACAAGCAAAGATTCAAGTG+TGG | - | chr1_3:52278349-52278368 | None:intergenic | 40.0% | |
| TTTGCTTGTCCTCAAGCAAA+AGG | + | chr1_3:52278359-52278378 | Msa0124490:intron | 40.0% | |
| TACAGGAGCAAGAAAAAGGT+TGG | - | chr1_3:52278547-52278566 | None:intergenic | 40.0% | |
| ACCACCACAATTAGGAAGTT+AGG | + | chr1_3:52278783-52278802 | Msa0124490:intron | 40.0% | |
| CCACCACAATTAGGAAGTTA+GGG | + | chr1_3:52278784-52278803 | Msa0124490:intron | 40.0% | |
| CTTTGAGCAAGTGTATGAGT+AGG | - | chr1_3:52278988-52279007 | None:intergenic | 40.0% | |
| ! | CAATTGGGTGCTTTTCTCAT+TGG | + | chr1_3:52279012-52279031 | Msa0124490:intron | 40.0% |
| AAGAAGGAGAGAAGAGGTAA+GGG | + | chr1_3:52279409-52279428 | Msa0124490:intron | 40.0% | |
| ATGCACCAATTCAATCTCCA+AGG | - | chr1_3:52279483-52279502 | None:intergenic | 40.0% | |
| ! | CATTGTTTTCTTCCGACAAG+CGG | + | chr1_3:52279520-52279539 | Msa0124490:intron | 40.0% |
| GGCTAAGAAATGAAGTCCAA+AGG | - | chr1_3:52279551-52279570 | None:intergenic | 40.0% | |
| ! | AGGCAAGGTGTAGAACTTTT+GGG | - | chr1_3:52279573-52279592 | None:intergenic | 40.0% |
| ! | AAGGCAAGGTGTAGAACTTT+TGG | - | chr1_3:52279574-52279593 | None:intergenic | 40.0% |
| ATGACGATCAAAGATGGACA+TGG | - | chr1_3:52279635-52279654 | None:intergenic | 40.0% | |
| !! | CATTTAGCTCTCTGACTTCA+TGG | + | chr1_3:52279652-52279671 | Msa0124490:intron | 40.0% |
| TTGCACCTTCTCTTTCATCA+TGG | + | chr1_3:52279703-52279722 | Msa0124490:intron | 40.0% | |
| CAATGGGTACATTGAGTGTA+AGG | + | chr1_3:52279811-52279830 | Msa0124490:intron | 40.0% | |
| GTAAGGTCATATTGCAAAGG+TGG | + | chr1_3:52279828-52279847 | Msa0124490:intron | 40.0% | |
| GGAGGGGATAAATCAAATTG+AGG | - | chr1_3:52279910-52279929 | None:intergenic | 40.0% | |
| ACATTCATTGCTGGGAAGTT+TGG | - | chr1_3:52279945-52279964 | None:intergenic | 40.0% | |
| GGTGTGATTACATTCATTGC+TGG | - | chr1_3:52279954-52279973 | None:intergenic | 40.0% | |
| CTTGTAGCTGATATAGTGGT+AGG | - | chr1_3:52279978-52279997 | None:intergenic | 40.0% | |
| !! | TTTGAAGGTACCTAAGCACT+GGG | + | chr1_3:52280150-52280169 | Msa0124490:intron | 40.0% |
| !! | TAATATTCCGGCTTTAGAGC+TGG | + | chr1_3:52280254-52280273 | Msa0124490:intron | 40.0% |
| CCAGAAGGAAACTCTATGAT+CGG | + | chr1_3:52280367-52280386 | Msa0124490:intron | 40.0% | |
| CAGAAGGAAACTCTATGATC+GGG | + | chr1_3:52280368-52280387 | Msa0124490:intron | 40.0% | |
| AGAAGGAAACTCTATGATCG+GGG | + | chr1_3:52280369-52280388 | Msa0124490:intron | 40.0% | |
| TGAGATGCTTAAGCCTATGA+GGG | - | chr1_3:52280465-52280484 | None:intergenic | 40.0% | |
| ACATGCATAGAATGAGAGTC+AGG | + | chr1_3:52280536-52280555 | Msa0124490:intron | 40.0% | |
| CTAAACCTTTGCATCCTTGT+AGG | - | chr1_3:52280565-52280584 | None:intergenic | 40.0% | |
| CTTCAAAGATGACACCCAAA+AGG | - | chr1_3:52280609-52280628 | None:intergenic | 40.0% | |
| ACTATGCCATGATTCTTTGC+CGG | + | chr1_3:52280629-52280648 | Msa0124490:intron | 40.0% | |
| ! | TCCACAAAAGAAAAGAGCAC+CGG | - | chr1_3:52280651-52280670 | None:intergenic | 40.0% |
| TCAAAGGTCTAATGGCTTCA+AGG | - | chr1_3:52280712-52280731 | None:intergenic | 40.0% | |
| AAAAGTCAACCCAAGGTCAA+AGG | - | chr1_3:52280728-52280747 | None:intergenic | 40.0% | |
| ! | TTTTGGTGAAGGTTAGGGTT+TGG | + | chr1_3:52280751-52280770 | Msa0124490:intron | 40.0% |
| TTTGGTGAAGGTTAGGGTTT+GGG | + | chr1_3:52280752-52280771 | Msa0124490:intron | 40.0% | |
| ! | AGGGTTTGGGAAGAATTTTG+TGG | + | chr1_3:52280765-52280784 | Msa0124490:intron | 40.0% |
| ATGGGTTTAGATGTGGAGAT+TGG | + | chr1_3:52280831-52280850 | Msa0124490:intron | 40.0% | |
| !!! | GGTTTTTGGGTTAGGGTTTA+TGG | + | chr1_3:52280867-52280886 | Msa0124490:intron | 40.0% |
| GGTTAGGGTTTATGGAGATA+AGG | + | chr1_3:52280875-52280894 | Msa0124490:intron | 40.0% | |
| GGTTTATGGAGATAAGGGTT+TGG | + | chr1_3:52280881-52280900 | Msa0124490:intron | 40.0% | |
| TGGTGAATTATGGGTTTGAG+TGG | + | chr1_3:52280901-52280920 | Msa0124490:intron | 40.0% | |
| GGGGAAGAATTGAATTGGTT+TGG | + | chr1_3:52280980-52280999 | Msa0124490:intron | 40.0% | |
| ! | GGTTTGAGGTTTGATGGTTA+TGG | + | chr1_3:52281026-52281045 | Msa0124490:intron | 40.0% |
| ! | TTGAGGTTTGATGGTTATGG+AGG | + | chr1_3:52281029-52281048 | Msa0124490:intron | 40.0% |
| AGATGTTTGAAGGTAGAGAG+AGG | + | chr1_3:52281061-52281080 | Msa0124490:intron | 40.0% | |
| ! | CCAGAGTTTGAAGCAAAAAG+GGG | - | chr1_3:52281201-52281220 | None:intergenic | 40.0% |
| ! | GCCAGAGTTTGAAGCAAAAA+GGG | - | chr1_3:52281202-52281221 | None:intergenic | 40.0% |
| ! | TGCCAGAGTTTGAAGCAAAA+AGG | - | chr1_3:52281203-52281222 | None:intergenic | 40.0% |
| ! | TTTTGCTTCAAACTCTGGCA+CGG | + | chr1_3:52281203-52281222 | Msa0124490:intron | 40.0% |
| GAGTGTGATTCAAGAAGAAC+TGG | - | chr1_3:52281266-52281285 | None:intergenic | 40.0% | |
| ACTTTAAACGAGCACTTCGT+GGG | - | chr1_3:52281363-52281382 | None:intergenic | 40.0% | |
| CCTAGTGAGAGATTAGGTAT+CGG | - | chr1_3:52281417-52281436 | None:intergenic | 40.0% | |
| CGATACCTAATCTCTCACTA+GGG | + | chr1_3:52281415-52281434 | Msa0124490:intron | 40.0% | |
| GATACCTAATCTCTCACTAG+GGG | + | chr1_3:52281416-52281435 | Msa0124490:intron | 40.0% | |
| AAAGAGCAACGTGTGATTTG+GGG | - | chr1_3:52281467-52281486 | None:intergenic | 40.0% | |
| GAAAGAGCAACGTGTGATTT+GGG | - | chr1_3:52281468-52281487 | None:intergenic | 40.0% | |
| AGAAAGAGCAACGTGTGATT+TGG | - | chr1_3:52281469-52281488 | None:intergenic | 40.0% | |
| CGTTGCTCTTTCTATAGTCT+TGG | + | chr1_3:52281476-52281495 | Msa0124490:intron | 40.0% | |
| GTCTTGGATCCTATGACATA+TGG | + | chr1_3:52281492-52281511 | Msa0124490:intron | 40.0% | |
| GGATCCTATGACATATGGTA+TGG | + | chr1_3:52281497-52281516 | Msa0124490:intron | 40.0% | |
| CCAAGTTAGATGAGCAGTTT+AGG | - | chr1_3:52281584-52281603 | None:intergenic | 40.0% | |
| CCTAAACTGCTCATCTAACT+TGG | + | chr1_3:52281581-52281600 | Msa0124490:intron | 40.0% | |
| ! | TTTTCTTGGTTTCCACAACG+GGG | + | chr1_3:52281726-52281745 | Msa0124490:intron | 40.0% |
| TCTAATTGCTTACCATCCCT+AGG | + | chr1_3:52281752-52281771 | Msa0124490:intron | 40.0% | |
| AATGCTATTACACCTAGGGA+TGG | - | chr1_3:52281767-52281786 | None:intergenic | 40.0% | |
| ! | TAGCATTTATCGGGCTTTTG+GGG | + | chr1_3:52281780-52281799 | Msa0124490:intron | 40.0% |
| TTACTAGTTGGGCTACTTGA+GGG | + | chr1_3:52281852-52281871 | Msa0124490:intron | 40.0% | |
| ! | AGTTCCAAGTCGGATTTTTG+AGG | + | chr1_3:52282019-52282038 | Msa0124490:intron | 40.0% |
| ! | GTTCCAAGTCGGATTTTTGA+GGG | + | chr1_3:52282020-52282039 | Msa0124490:intron | 40.0% |
| ! | GGTTTGGCCTATCAAGTTTT+TGG | - | chr1_3:52282479-52282498 | None:intergenic | 40.0% |
| TTGAATTCACAACTCCCTAG+CGG | - | chr1_3:52277206-52277225 | None:intergenic | 40.0% | |
| AACAAACCCTTCACTAGACA+AGG | + | chr1_3:52277342-52277361 | Msa0124490:intron | 40.0% | |
| ! | GTTAAAGCCTTGTCTAGTGA+AGG | - | chr1_3:52277352-52277371 | None:intergenic | 40.0% |
| AACTATGGGTAAACTCTCAC+CGG | - | chr1_3:52282793-52282812 | None:intergenic | 40.0% | |
| ! | CGAAATAGGCTTGGTAACTA+TGG | - | chr1_3:52282808-52282827 | None:intergenic | 40.0% |
| TCAAACTGTAGAAGCGAAAG+TGG | - | chr1_3:52277665-52277684 | None:intergenic | 40.0% | |
| ! | GGTTAAAGCTTGGTTCGATT+AGG | + | chr1_3:52283091-52283110 | Msa0124490:intron | 40.0% |
| GAGTAGACTCTTCTTGTCTT+GGG | - | chr1_3:52277800-52277819 | None:intergenic | 40.0% | |
| TGAGTAGACTCTTCTTGTCT+TGG | - | chr1_3:52277801-52277820 | None:intergenic | 40.0% | |
| !!! | CTCTTTTGCTGCTTTTCTTC+AGG | - | chr1_3:52278025-52278044 | None:intergenic | 40.0% |
| AAAGCAGCAAAAGAGACTTC+TGG | + | chr1_3:52278030-52278049 | Msa0124490:intron | 40.0% | |
| ! | GTGCCAAACTTTTGACCTTT+TGG | + | chr1_3:52283433-52283452 | Msa0124490:intron | 40.0% |
| TGTCTTGGAGCAAAAGAAAG+AGG | - | chr1_3:52278168-52278187 | None:intergenic | 40.0% | |
| !! | ATATATGGTGGAAGGTGTCT+TGG | - | chr1_3:52278183-52278202 | None:intergenic | 40.0% |
| GGAAAACAAATCAGTTACGG+CGG | - | chr1_3:52283795-52283814 | None:intergenic | 40.0% | |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr1_3:52283909-52283928 | None:intergenic | 40.0% |
| ACCAAAAAGGTGGAAGATGA+TGG | + | chr1_3:52284112-52284131 | Msa0124490:intron | 40.0% | |
| ! | TCCATCATCTTCCACCTTTT+TGG | - | chr1_3:52284116-52284135 | None:intergenic | 40.0% |
| GATTCAGTTAGTACTCTTGC+AGG | + | chr1_3:52284197-52284216 | Msa0124490:intron | 40.0% | |
| !! | GCTTTTGGAAGAGTTTTACC+AGG | - | chr1_3:52284236-52284255 | None:intergenic | 40.0% |
| !! | GGGATACTTTTTACCGCTTT+TGG | + | chr1_3:52284286-52284305 | Msa0124490:intron | 40.0% |
| AGTGACTCATTTCAGCTTCT+AGG | + | chr1_3:52284461-52284480 | Msa0124490:intron | 40.0% | |
| CTCATTTCAGCTTCTAGGTA+TGG | + | chr1_3:52284466-52284485 | Msa0124490:intron | 40.0% | |
| CTTCTAGGTATGGCTAAAAG+AGG | + | chr1_3:52284476-52284495 | Msa0124490:intron | 40.0% | |
| CGTTATGGAACACCTCTTAT+TGG | + | chr1_3:52284530-52284549 | Msa0124490:intron | 40.0% | |
| ! | GGTATTTTGTTCTCAGCTTC+TGG | + | chr1_3:52284551-52284570 | Msa0124490:intron | 40.0% |
| CAGTACTCTTCTGGTACTTA+CGG | - | chr1_3:52285113-52285132 | None:intergenic | 40.0% | |
| TCAAAAGCTCAGTACTCTTC+TGG | - | chr1_3:52285122-52285141 | None:intergenic | 40.0% | |
| TTACCTGGTTGGATTGTTTG+AGG | + | chr1_3:52285352-52285371 | Msa0124490:CDS | 40.0% | |
| TGTGTGCAATTCATGCTAAG+AGG | + | chr1_3:52285384-52285403 | Msa0124490:CDS | 40.0% | |
| GTGTGCAATTCATGCTAAGA+GGG | + | chr1_3:52285385-52285404 | Msa0124490:CDS | 40.0% | |
| !!! | AGGTGCTTTTAAGGTTATGG+CGG | + | chr1_3:52285475-52285494 | Msa0124490:three_prime_UTR | 40.0% |
| !!! | TGGCGGATTAGTATTTTGGA+AGG | + | chr1_3:52285492-52285511 | Msa0124490:three_prime_UTR | 40.0% |
| GCCAAAATTGCATATGGTGG+AGG | - | chr1_3:52275651-52275670 | None:intergenic | 45.0% | |
| TTTCCCACATCTCCTTCGAT+CGG | + | chr1_3:52276060-52276079 | Msa0124490:intron | 45.0% | |
| AGTTGATCTGATCCGATCGA+AGG | - | chr1_3:52276075-52276094 | None:intergenic | 45.0% | |
| AGATTGTGGGGACTGATTGT+GGG | - | chr1_3:52277088-52277107 | None:intergenic | 45.0% | |
| AAGATTGTGGGGACTGATTG+TGG | - | chr1_3:52277089-52277108 | None:intergenic | 45.0% | |
| TGAGGTAGGAGAAGATTGTG+GGG | - | chr1_3:52277100-52277119 | None:intergenic | 45.0% | |
| ! | GAGCAAGGTTGAGTTGTATG+AGG | - | chr1_3:52277118-52277137 | None:intergenic | 45.0% |
| ACTTTCATCGGAAAGGTGAG+GGG | - | chr1_3:52277426-52277445 | None:intergenic | 45.0% | |
| GACTTTCATCGGAAAGGTGA+GGG | - | chr1_3:52277427-52277446 | None:intergenic | 45.0% | |
| TCACCTTTCCGATGAAAGTC+CGG | + | chr1_3:52277427-52277446 | Msa0124490:intron | 45.0% | |
| TCAAGTCAGCGAAATAGGCT+TGG | - | chr1_3:52277473-52277492 | None:intergenic | 45.0% | |
| CAGCAAAAGAGACTTCTGGA+GGG | + | chr1_3:52278034-52278053 | Msa0124490:intron | 45.0% | |
| TCTCCACAAAGTCAGAAGCT+TGG | - | chr1_3:52278095-52278114 | None:intergenic | 45.0% | |
| TGGAGCAAAAGAAAGAGGAC+TGG | - | chr1_3:52278163-52278182 | None:intergenic | 45.0% | |
| TGTCCTCAAGCAAAAGGCAA+TGG | + | chr1_3:52278365-52278384 | Msa0124490:intron | 45.0% | |
| ! | TGTCCATTGCCTTTTGCTTG+AGG | - | chr1_3:52278371-52278390 | None:intergenic | 45.0% |
| TAGGGGCTATCTATCCTCAT+AGG | + | chr1_3:52278703-52278722 | Msa0124490:intron | 45.0% | |
| CCCTAACTTCCTAATTGTGG+TGG | - | chr1_3:52278787-52278806 | None:intergenic | 45.0% | |
| AGTTAAATGGGGAGGGAGAA+TGG | - | chr1_3:52278836-52278855 | None:intergenic | 45.0% | |
| GAGTAGGAGAGAGATGAAGA+AGG | + | chr1_3:52279393-52279412 | Msa0124490:intron | 45.0% | |
| GAGATGAAGAAGGAGAGAAG+AGG | + | chr1_3:52279403-52279422 | Msa0124490:intron | 45.0% | |
| GAAGAAGGAGAGAAGAGGTA+AGG | + | chr1_3:52279408-52279427 | Msa0124490:intron | 45.0% | |
| GAGGACCTTGGAGATTGAAT+TGG | + | chr1_3:52279475-52279494 | Msa0124490:intron | 45.0% | |
| ! | GGCAAGGTGTAGAACTTTTG+GGG | - | chr1_3:52279572-52279591 | None:intergenic | 45.0% |
| TACACCTTGCCTTTGTTGCT+CGG | + | chr1_3:52279581-52279600 | Msa0124490:intron | 45.0% | |
| GAGCACCATGATGAAAGAGA+AGG | - | chr1_3:52279711-52279730 | None:intergenic | 45.0% | |
| GTGTTAGTCCGAGATAGGTT+AGG | + | chr1_3:52279777-52279796 | Msa0124490:intron | 45.0% | |
| ! | TTTGGAGTAAGTGAGGAGGA+GGG | - | chr1_3:52279927-52279946 | None:intergenic | 45.0% |
| ! | GAAGTTTGGAGTAAGTGAGG+AGG | - | chr1_3:52279931-52279950 | None:intergenic | 45.0% |
| ! | TGGGAAGTTTGGAGTAAGTG+AGG | - | chr1_3:52279934-52279953 | None:intergenic | 45.0% |
| GTAGCTGATATAGTGGTAGG+TGG | - | chr1_3:52279975-52279994 | None:intergenic | 45.0% | |
| GCTTAGTTCCTATTGAGGCA+AGG | + | chr1_3:52280003-52280022 | Msa0124490:intron | 45.0% | |
| CTTGACTACCTTGCCTCAAT+AGG | - | chr1_3:52280014-52280033 | None:intergenic | 45.0% | |
| GGAAGGAAGTAGGAACATGT+AGG | - | chr1_3:52280103-52280122 | None:intergenic | 45.0% | |
| ! | ATTTGGGGTAGGAAGGAAGT+AGG | - | chr1_3:52280113-52280132 | None:intergenic | 45.0% |
| TACTTCCTTCCTACCCCAAA+TGG | + | chr1_3:52280112-52280131 | Msa0124490:intron | 45.0% | |
| ! | TTGTACCATTTGGGGTAGGA+AGG | - | chr1_3:52280120-52280139 | None:intergenic | 45.0% |
| ! | TGACTTGTACCATTTGGGGT+AGG | - | chr1_3:52280124-52280143 | None:intergenic | 45.0% |
| !! | CTTTGAAGGTACCTAAGCAC+TGG | + | chr1_3:52280149-52280168 | Msa0124490:intron | 45.0% |
| ACATTCACAACCCAGTGCTT+AGG | - | chr1_3:52280163-52280182 | None:intergenic | 45.0% | |
| !! | AGCTTTTGGAAACGCATCAC+TGG | - | chr1_3:52280224-52280243 | None:intergenic | 45.0% |
| ATGCGTTTCCAAAAGCTAGC+AGG | + | chr1_3:52280227-52280246 | Msa0124490:intron | 45.0% | |
| TGCGTTTCCAAAAGCTAGCA+GGG | + | chr1_3:52280228-52280247 | Msa0124490:intron | 45.0% | |
| !! | TTGGAATCCAGCTCTAAAGC+CGG | - | chr1_3:52280264-52280283 | None:intergenic | 45.0% |
| CCGATCATAGAGTTTCCTTC+TGG | - | chr1_3:52280370-52280389 | None:intergenic | 45.0% | |
| AGATGCTTAAGCCTATGAGG+GGG | - | chr1_3:52280463-52280482 | None:intergenic | 45.0% | |
| GAGATGCTTAAGCCTATGAG+GGG | - | chr1_3:52280464-52280483 | None:intergenic | 45.0% | |
| GTGAGATGCTTAAGCCTATG+AGG | - | chr1_3:52280466-52280485 | None:intergenic | 45.0% | |
| TGAGAGTCAGGATACCTACA+AGG | + | chr1_3:52280548-52280567 | Msa0124490:intron | 45.0% | |
| GGATACCTACAAGGATGCAA+AGG | + | chr1_3:52280557-52280576 | Msa0124490:intron | 45.0% | |
| AAGATGACACCCAAAAGGCT+AGG | - | chr1_3:52280604-52280623 | None:intergenic | 45.0% | |
| ! | GGTGCTCTTTTCTTTTGTGG+AGG | + | chr1_3:52280650-52280669 | Msa0124490:intron | 45.0% |
| CTAATGGCTTCAAGGAGAAG+TGG | - | chr1_3:52280704-52280723 | None:intergenic | 45.0% | |
| AGCCATTAGACCTTTGACCT+TGG | + | chr1_3:52280715-52280734 | Msa0124490:intron | 45.0% | |
| GCCATTAGACCTTTGACCTT+GGG | + | chr1_3:52280716-52280735 | Msa0124490:intron | 45.0% | |
| ACCCAAGGTCAAAGGTCTAA+TGG | - | chr1_3:52280720-52280739 | None:intergenic | 45.0% | |
| TTGAGGTTATAGGAGGCTAG+AGG | + | chr1_3:52281120-52281139 | Msa0124490:intron | 45.0% | |
| CAAAGTCCAGAATGTTGGCA+TGG | - | chr1_3:52281177-52281196 | None:intergenic | 45.0% | |
| CATGCCAACATTCTGGACTT+TGG | + | chr1_3:52281175-52281194 | Msa0124490:intron | 45.0% | |
| ! | CCCCTTTTTGCTTCAAACTC+TGG | + | chr1_3:52281198-52281217 | Msa0124490:intron | 45.0% |
| GACTTTAAACGAGCACTTCG+TGG | - | chr1_3:52281364-52281383 | None:intergenic | 45.0% | |
| CCGATACCTAATCTCTCACT+AGG | + | chr1_3:52281414-52281433 | Msa0124490:intron | 45.0% | |
| TTGTCCCCTAGTGAGAGATT+AGG | - | chr1_3:52281423-52281442 | None:intergenic | 45.0% | |
| AATCTCTCACTAGGGGACAA+TGG | + | chr1_3:52281423-52281442 | Msa0124490:intron | 45.0% | |
| ! | AAGAGCAACGTGTGATTTGG+GGG | - | chr1_3:52281466-52281485 | None:intergenic | 45.0% |
| TTGGACTCATCAAACCCTTG+TGG | + | chr1_3:52281600-52281619 | Msa0124490:intron | 45.0% | |
| TGGACTCATCAAACCCTTGT+GGG | + | chr1_3:52281601-52281620 | Msa0124490:intron | 45.0% | |
| ! | TCATGTGGTGGTGATATGTG+AGG | + | chr1_3:52281639-52281658 | Msa0124490:intron | 45.0% |
| !!! | ATTTATCGGGCTTTTGGGGT+TGG | + | chr1_3:52281784-52281803 | Msa0124490:intron | 45.0% |
| !! | GGGTTGGTTTCAGTTTGACT+CGG | + | chr1_3:52281800-52281819 | Msa0124490:intron | 45.0% |
| !! | GGTTGGTTTCAGTTTGACTC+GGG | + | chr1_3:52281801-52281820 | Msa0124490:intron | 45.0% |
| TGGGGAAGAGGTTACTAGTT+GGG | + | chr1_3:52281841-52281860 | Msa0124490:intron | 45.0% | |
| GTTACTAGTTGGGCTACTTG+AGG | + | chr1_3:52281851-52281870 | Msa0124490:intron | 45.0% | |
| CAATAGGCTTTCCGCAAAAG+TGG | - | chr1_3:52281918-52281937 | None:intergenic | 45.0% | |
| AGTCCCTCAAAAATCCGACT+TGG | - | chr1_3:52282026-52282045 | None:intergenic | 45.0% | |
| ! | CCTGTTTTCGCTTACAACCA+AGG | - | chr1_3:52282049-52282068 | None:intergenic | 45.0% |
| CCTTGGTTGTAAGCGAAAAC+AGG | + | chr1_3:52282046-52282065 | Msa0124490:intron | 45.0% | |
| TGGTTGTAAGCGAAAACAGG+TGG | + | chr1_3:52282049-52282068 | Msa0124490:intron | 45.0% | |
| AATCCTGACAAGCTGGTGAA+AGG | + | chr1_3:52282224-52282243 | Msa0124490:intron | 45.0% | |
| ATCCTGACAAGCTGGTGAAA+GGG | + | chr1_3:52282225-52282244 | Msa0124490:intron | 45.0% | |
| GAGAGAGTGAGAGAGAGAAA+AGG | + | chr1_3:52282365-52282384 | Msa0124490:intron | 45.0% | |
| AACGGCGCCAAAAACTTGAT+AGG | + | chr1_3:52282469-52282488 | Msa0124490:intron | 45.0% | |
| TAAAGGAGCCTTGGGATCAT+TGG | + | chr1_3:52282652-52282671 | Msa0124490:intron | 45.0% | |
| ATGACGAACCAATGATCCCA+AGG | - | chr1_3:52282663-52282682 | None:intergenic | 45.0% | |
| ACTTTCATCGGAAAGGTGAG+GGG | - | chr1_3:52277426-52277445 | None:intergenic | 45.0% | |
| GACTTTCATCGGAAAGGTGA+GGG | - | chr1_3:52277427-52277446 | None:intergenic | 45.0% | |
| TCACCTTTCCGATGAAAGTC+CGG | + | chr1_3:52277427-52277446 | Msa0124490:intron | 45.0% | |
| AACTCTCACCGGACTTTCAT+CGG | - | chr1_3:52282782-52282801 | None:intergenic | 45.0% | |
| TCAAGTCAGCGAAATAGGCT+TGG | - | chr1_3:52277473-52277492 | None:intergenic | 45.0% | |
| ACTGTAGAAGCGAAAGTGGA+GGG | - | chr1_3:52283005-52283024 | None:intergenic | 45.0% | |
| AACTGTAGAAGCGAAAGTGG+AGG | - | chr1_3:52283006-52283025 | None:intergenic | 45.0% | |
| CAGCAAAAGAGACTTCTGGA+GGG | + | chr1_3:52278034-52278053 | Msa0124490:intron | 45.0% | |
| TGGAGCAAAAGAAAGAGGAC+TGG | - | chr1_3:52278163-52278182 | None:intergenic | 45.0% | |
| GGAAAACGACGTCAGAGTTA+CGG | - | chr1_3:52283705-52283724 | None:intergenic | 45.0% | |
| !! | GTAACTCTGACGTCGTTTTC+CGG | + | chr1_3:52283704-52283723 | Msa0124490:intron | 45.0% |
| !! | GTCGTTTTCCGGTTGATTCA+CGG | + | chr1_3:52283715-52283734 | Msa0124490:intron | 45.0% |
| !! | TTTTCCGGTTGATTCACGGT+GGG | + | chr1_3:52283719-52283738 | Msa0124490:intron | 45.0% |
| AAATCAGTTACGGCGGTGAA+CGG | - | chr1_3:52283788-52283807 | None:intergenic | 45.0% | |
| !!! | CTTTTTTCGTTCAGGCTGCT+AGG | + | chr1_3:52283874-52283893 | Msa0124490:intron | 45.0% |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr1_3:52283894-52283913 | Msa0124490:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr1_3:52283897-52283916 | Msa0124490:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr1_3:52283955-52283974 | None:intergenic | 45.0% | |
| GCAGGAGAAGTGAATAATCC+TGG | + | chr1_3:52284215-52284234 | Msa0124490:intron | 45.0% | |
| !! | TTACCGCTTTTGGTTGGAAC+TGG | + | chr1_3:52284296-52284315 | Msa0124490:intron | 45.0% |
| TTTGTTCTCAGCTTCTGGTG+CGG | + | chr1_3:52284556-52284575 | Msa0124490:intron | 45.0% | |
| ! | ACTGCTCCAATTTTCCCAAC+AGG | - | chr1_3:52284718-52284737 | None:intergenic | 45.0% |
| TCATGGACAAGACGCTGAAA+TGG | - | chr1_3:52285156-52285175 | None:intergenic | 45.0% | |
| TGTCCTCAAACAATCCAACC+AGG | - | chr1_3:52285358-52285377 | None:intergenic | 45.0% | |
| GAGGGTGACAATTATGCCAA+AGG | + | chr1_3:52285403-52285422 | Msa0124490:CDS | 45.0% | |
| TGAGCAAGCTGAATGTCCTT+TGG | - | chr1_3:52285422-52285441 | None:intergenic | 45.0% | |
| !! | TAAAATTCAATATAAAATTA+TGG | + | chr1_3:52276769-52276788 | Msa0124490:intron | 5.0% |
| !! | AAAATTCAATATAAAATTAT+GGG | + | chr1_3:52276770-52276789 | Msa0124490:intron | 5.0% |
| !! | AAATAACAATAATAAAATAA+AGG | + | chr1_3:52277291-52277310 | Msa0124490:intron | 5.0% |
| !! | AAATAACAATAATAAAATAA+AGG | + | chr1_3:52277291-52277310 | Msa0124490:intron | 5.0% |
| GATCCGATCGAAGGAGATGT+GGG | - | chr1_3:52276066-52276085 | None:intergenic | 50.0% | |
| TGATCCGATCGAAGGAGATG+TGG | - | chr1_3:52276067-52276086 | None:intergenic | 50.0% | |
| ! | GGGTCTGAGATGAGAACCAT+AGG | - | chr1_3:52277067-52277086 | None:intergenic | 50.0% |
| GATTGTGGGGACTGATTGTG+GGG | - | chr1_3:52277087-52277106 | None:intergenic | 50.0% | |
| TTTGACCTATCACGCGAGCA+AGG | - | chr1_3:52277133-52277152 | None:intergenic | 50.0% | |
| TAGGTCAAACCGCAAGTGCA+CGG | + | chr1_3:52277144-52277163 | Msa0124490:intron | 50.0% | |
| TTCGATAGACCGTGCACTTG+CGG | - | chr1_3:52277156-52277175 | None:intergenic | 50.0% | |
| !! | AGAGAGAGTATCGTTCCGCT+AGG | + | chr1_3:52277188-52277207 | Msa0124490:intron | 50.0% |
| !! | GAGAGAGTATCGTTCCGCTA+GGG | + | chr1_3:52277189-52277208 | Msa0124490:intron | 50.0% |
| GGACTTTCATCGGAAAGGTG+AGG | - | chr1_3:52277428-52277447 | None:intergenic | 50.0% | |
| TCACCGGACTTTCATCGGAA+AGG | - | chr1_3:52277433-52277452 | None:intergenic | 50.0% | |
| ! | CGAAAGCGGAGCTTTGATGT+TGG | - | chr1_3:52277594-52277613 | None:intergenic | 50.0% |
| GCAGCAAAAGAGACTTCTGG+AGG | + | chr1_3:52278033-52278052 | Msa0124490:intron | 50.0% | |
| ! | CAAAAGAGACTTCTGGAGGG+TGG | + | chr1_3:52278037-52278056 | Msa0124490:intron | 50.0% |
| GTGCCAAGCTTCTGACTTTG+TGG | + | chr1_3:52278089-52278108 | Msa0124490:intron | 50.0% | |
| !! | TTGGGTTGAATAGGTTCCCG+AGG | - | chr1_3:52278492-52278511 | None:intergenic | 50.0% |
| TTTAAGCACAAAGGGGCTGC+AGG | + | chr1_3:52278676-52278695 | Msa0124490:intron | 50.0% | |
| AGGGAGTCACCACCACAATT+AGG | + | chr1_3:52278775-52278794 | Msa0124490:intron | 50.0% | |
| TTGTCCTTTCCCCCACATGT+TGG | + | chr1_3:52278808-52278827 | Msa0124490:intron | 50.0% | |
| AGAATGGCACCAACATGTGG+GGG | - | chr1_3:52278820-52278839 | None:intergenic | 50.0% | |
| GAGAATGGCACCAACATGTG+GGG | - | chr1_3:52278821-52278840 | None:intergenic | 50.0% | |
| GGAGAATGGCACCAACATGT+GGG | - | chr1_3:52278822-52278841 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+GGG | - | chr1_3:52279285-52279304 | None:intergenic | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+GGG | - | chr1_3:52279286-52279305 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | - | chr1_3:52279285-52279304 | None:intergenic | 50.0% | |
| ACACACACTCTCTCTCTCTC+TGG | + | chr1_3:52279302-52279321 | Msa0124490:intron | 50.0% | |
| CACACACTCTCTCTCTCTCT+GGG | + | chr1_3:52279303-52279322 | Msa0124490:intron | 50.0% | |
| ACACACTCTCTCTCTCTCTG+GGG | + | chr1_3:52279304-52279323 | Msa0124490:intron | 50.0% | |
| GAGAAGAGGTAAGGGAAGAG+AGG | + | chr1_3:52279417-52279436 | Msa0124490:intron | 50.0% | |
| AGGTAAGGGAAGAGAGGAAG+AGG | + | chr1_3:52279423-52279442 | Msa0124490:intron | 50.0% | |
| GAGGTTCATAAGGAGGACCT+TGG | + | chr1_3:52279463-52279482 | Msa0124490:intron | 50.0% | |
| !! | GGATAAGCACCGAGCAACAA+AGG | - | chr1_3:52279593-52279612 | None:intergenic | 50.0% |
| GCTCTCTGACTTCATGGTCA+TGG | + | chr1_3:52279658-52279677 | Msa0124490:intron | 50.0% | |
| GGTGCAAACTTGCACCATGA+GGG | - | chr1_3:52279690-52279709 | None:intergenic | 50.0% | |
| AGGTGCAAACTTGCACCATG+AGG | - | chr1_3:52279691-52279710 | None:intergenic | 50.0% | |
| TTGGAGTAAGTGAGGAGGAG+GGG | - | chr1_3:52279926-52279945 | None:intergenic | 50.0% | |
| ! | GTTTGGAGTAAGTGAGGAGG+AGG | - | chr1_3:52279928-52279947 | None:intergenic | 50.0% |
| GAGCTGGATTCCAAGAGTCA+TGG | + | chr1_3:52280270-52280289 | Msa0124490:intron | 50.0% | |
| ! | TGGAATGGGCTTCGCAAATG+CGG | - | chr1_3:52280303-52280322 | None:intergenic | 50.0% |
| AAGTTCTCGTACCCCCTCAT+AGG | + | chr1_3:52280449-52280468 | Msa0124490:intron | 50.0% | |
| !! | AGAGCACCGGCAAAGAATCA+TGG | - | chr1_3:52280638-52280657 | None:intergenic | 50.0% |
| ! | GCCGGTGCTCTTTTCTTTTG+TGG | + | chr1_3:52280647-52280666 | Msa0124490:intron | 50.0% |
| ! | TTTCTTTTGTGGAGGCCCTC+CGG | + | chr1_3:52280658-52280677 | Msa0124490:intron | 50.0% |
| AAGGAACCAGCAAGCTCTTC+CGG | - | chr1_3:52280680-52280699 | None:intergenic | 50.0% | |
| GGTTATAGGAGGCTAGAGGT+CGG | + | chr1_3:52281124-52281143 | Msa0124490:intron | 50.0% | |
| GTTATAGGAGGCTAGAGGTC+GGG | + | chr1_3:52281125-52281144 | Msa0124490:intron | 50.0% | |
| ! | TTTGAAGCCCTGTGACCAGA+AGG | - | chr1_3:52281238-52281257 | None:intergenic | 50.0% |
| TTAAACGAGCACTTCGTGGG+AGG | - | chr1_3:52281360-52281379 | None:intergenic | 50.0% | |
| GCAATTAGAAGACCCCGTTG+TGG | - | chr1_3:52281741-52281760 | None:intergenic | 50.0% | |
| !! | AGTTTGACTCGGGAAGACTC+CGG | + | chr1_3:52281811-52281830 | Msa0124490:intron | 50.0% |
| GTGGGGAAGAGGTTACTAGT+TGG | + | chr1_3:52281840-52281859 | Msa0124490:intron | 50.0% | |
| !! | CGGATTTTTGAGGGACTCCT+TGG | + | chr1_3:52282029-52282048 | Msa0124490:intron | 50.0% |
| TCCTGACAAGCTGGTGAAAG+GGG | + | chr1_3:52282226-52282245 | Msa0124490:intron | 50.0% | |
| AGCTGGTGAAAGGGGGAAAA+AGG | + | chr1_3:52282234-52282253 | Msa0124490:intron | 50.0% | |
| TTACAACAACTCCCCGGCAA+CGG | + | chr1_3:52282451-52282470 | Msa0124490:intron | 50.0% | |
| TTCGATAGACCGTGCACTTG+CGG | - | chr1_3:52277156-52277175 | None:intergenic | 50.0% | |
| !! | AGAGAGAGTATCGTTCCGCT+AGG | + | chr1_3:52277188-52277207 | Msa0124490:intron | 50.0% |
| !! | GAGAGAGTATCGTTCCGCTA+GGG | + | chr1_3:52277189-52277208 | Msa0124490:intron | 50.0% |
| GGACTTTCATCGGAAAGGTG+AGG | - | chr1_3:52277428-52277447 | None:intergenic | 50.0% | |
| TCACCGGACTTTCATCGGAA+AGG | - | chr1_3:52277433-52277452 | None:intergenic | 50.0% | |
| ! | CGAAAGCGGAGCTTTGATGT+TGG | - | chr1_3:52277594-52277613 | None:intergenic | 50.0% |
| GCAGCAAAAGAGACTTCTGG+AGG | + | chr1_3:52278033-52278052 | Msa0124490:intron | 50.0% | |
| ! | CAAAAGAGACTTCTGGAGGG+TGG | + | chr1_3:52278037-52278056 | Msa0124490:intron | 50.0% |
| CGTCAGAGTTACGGAGGTTA+CGG | - | chr1_3:52283696-52283715 | None:intergenic | 50.0% | |
| AAACGACGTCAGAGTTACGG+AGG | - | chr1_3:52283702-52283721 | None:intergenic | 50.0% | |
| !! | GTTTTCCGGTTGATTCACGG+TGG | + | chr1_3:52283718-52283737 | Msa0124490:intron | 50.0% |
| CAATCCCACCGTGAATCAAC+CGG | - | chr1_3:52283726-52283745 | None:intergenic | 50.0% | |
| GCACCAGTTCCAACCAAAAG+CGG | - | chr1_3:52284302-52284321 | None:intergenic | 50.0% | |
| ! | CTGGTGCGGTTTTGCTTTCT+TGG | + | chr1_3:52284570-52284589 | Msa0124490:intron | 50.0% |
| CCTGAAGTGCAAGAACTGCA+TGG | - | chr1_3:52285319-52285338 | None:intergenic | 50.0% | |
| CCATGCAGTTCTTGCACTTC+AGG | + | chr1_3:52285316-52285335 | Msa0124490:CDS | 50.0% | |
| ATTCGCGGTGAACGTGCTTA+GGG | + | chr1_3:52285446-52285465 | Msa0124490:CDS | 50.0% | |
| !!! | GGGTGGTGAAGGTGCTTTTA+AGG | + | chr1_3:52285466-52285485 | Msa0124490:exon | 50.0% |
| CTCAACCTTGCTCGCGTGAT+AGG | + | chr1_3:52277125-52277144 | Msa0124490:intron | 55.0% | |
| GTGAGGGGCTAAAGGGAAAC+CGG | - | chr1_3:52277411-52277430 | None:intergenic | 55.0% | |
| CGGAAAGGTGAGGGGCTAAA+GGG | - | chr1_3:52277418-52277437 | None:intergenic | 55.0% | |
| TCGGAAAGGTGAGGGGCTAA+AGG | - | chr1_3:52277419-52277438 | None:intergenic | 55.0% | |
| AAAGGGGCTGCAGGTGCTTA+GGG | + | chr1_3:52278685-52278704 | Msa0124490:intron | 55.0% | |
| GGGAGAATGGCACCAACATG+TGG | - | chr1_3:52278823-52278842 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGTGTGGG+GGG | - | chr1_3:52279283-52279302 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTGTGG+GGG | - | chr1_3:52279284-52279303 | None:intergenic | 55.0% | |
| ! | AGCACCGAGCAACAAAGGCA+AGG | - | chr1_3:52279588-52279607 | None:intergenic | 55.0% |
| GGTGCTTATCCTCTCGACCT+CGG | + | chr1_3:52279602-52279621 | Msa0124490:intron | 55.0% | |
| ATCTCGGACTAACACCGAGG+TGG | - | chr1_3:52279772-52279791 | None:intergenic | 55.0% | |
| CCTATCTCGGACTAACACCG+AGG | - | chr1_3:52279775-52279794 | None:intergenic | 55.0% | |
| !! | CCTCGGTGTTAGTCCGAGAT+AGG | + | chr1_3:52279772-52279791 | Msa0124490:intron | 55.0% |
| CGGGGTTCATCCATGACTCT+TGG | - | chr1_3:52280283-52280302 | None:intergenic | 55.0% | |
| ! | GAATGGGCTTCGCAAATGCG+GGG | - | chr1_3:52280301-52280320 | None:intergenic | 55.0% |
| ! | GGAATGGGCTTCGCAAATGC+GGG | - | chr1_3:52280302-52280321 | None:intergenic | 55.0% |
| AACCAGCAAGCTCTTCCGGA+GGG | - | chr1_3:52280676-52280695 | None:intergenic | 55.0% | |
| GGCTTCAAGGAGAAGTGGCA+AGG | - | chr1_3:52280699-52280718 | None:intergenic | 55.0% | |
| GGGGCCAAAGTCCAGAATGT+TGG | - | chr1_3:52281182-52281201 | None:intergenic | 55.0% | |
| CTGTGACCAGAAGGTTGGCA+CGG | - | chr1_3:52281229-52281248 | None:intergenic | 55.0% | |
| GTGCCAACCTTCTGGTCACA+GGG | + | chr1_3:52281228-52281247 | Msa0124490:intron | 55.0% | |
| AAGCCCTGTGACCAGAAGGT+TGG | - | chr1_3:52281234-52281253 | None:intergenic | 55.0% | |
| CCTGACAAGCTGGTGAAAGG+GGG | + | chr1_3:52282227-52282246 | Msa0124490:intron | 55.0% | |
| !!! | AAGTTTTTGGCGCCGTTGCC+GGG | - | chr1_3:52282466-52282485 | None:intergenic | 55.0% |
| !!! | CAAGTTTTTGGCGCCGTTGC+CGG | - | chr1_3:52282467-52282486 | None:intergenic | 55.0% |
| TAGGCCAAACCGCAAGTGCA+CGG | + | chr1_3:52282488-52282507 | Msa0124490:intron | 55.0% | |
| TAGACCGTGCACTTGCGGTT+TGG | - | chr1_3:52277151-52277170 | None:intergenic | 55.0% | |
| GTGAGGGGCTAAAGGGAAAC+CGG | - | chr1_3:52277411-52277430 | None:intergenic | 55.0% | |
| CGGAAAGGTGAGGGGCTAAA+GGG | - | chr1_3:52277418-52277437 | None:intergenic | 55.0% | |
| TCGGAAAGGTGAGGGGCTAA+AGG | - | chr1_3:52277419-52277438 | None:intergenic | 55.0% | |
| CAGAGTTACGGAGGTTACGG+TGG | - | chr1_3:52283693-52283712 | None:intergenic | 55.0% | |
| GTGAACGGTGGTTACCTTGG+TGG | - | chr1_3:52283773-52283792 | None:intergenic | 55.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr1_3:52283927-52283946 | Msa0124490:CDS | 55.0% | |
| GTGCAAGAACTGCATGGCTC+TGG | - | chr1_3:52285313-52285332 | None:intergenic | 55.0% | |
| TGCACTTCAGGAAGCAGCTG+AGG | + | chr1_3:52285328-52285347 | Msa0124490:CDS | 55.0% | |
| ! | CAGCTTGCTCATCGCATTCG+CGG | + | chr1_3:52285431-52285450 | Msa0124490:CDS | 55.0% |
| CATTCGCGGTGAACGTGCTT+AGG | + | chr1_3:52285445-52285464 | Msa0124490:CDS | 55.0% | |
| GAACGTGCTTAGGGTGGTGA+AGG | + | chr1_3:52285455-52285474 | Msa0124490:exon | 55.0% | |
| ! | GAGACTTCTGGAGGGTGGCA+CGG | + | chr1_3:52278042-52278061 | Msa0124490:intron | 60.0% |
| GGCCGTGCCACATATTGGCA+CGG | + | chr1_3:52278063-52278082 | Msa0124490:intron | 60.0% | |
| GCCGTGCCACATATTGGCAC+GGG | + | chr1_3:52278064-52278083 | Msa0124490:intron | 60.0% | |
| GCCCGTGCCAATATGTGGCA+CGG | - | chr1_3:52278068-52278087 | None:intergenic | 60.0% | |
| GCACAGCCCGTGCCAATATG+TGG | - | chr1_3:52278073-52278092 | None:intergenic | 60.0% | |
| CAAAGGGGCTGCAGGTGCTT+AGG | + | chr1_3:52278684-52278703 | Msa0124490:intron | 60.0% | |
| AAGGGGCTGCAGGTGCTTAG+GGG | + | chr1_3:52278686-52278705 | Msa0124490:intron | 60.0% | |
| GGCACCAACATGTGGGGGAA+AGG | - | chr1_3:52278815-52278834 | None:intergenic | 60.0% | |
| TGTGTGTGTGTGTGTGGGGG+GGG | - | chr1_3:52279281-52279300 | None:intergenic | 60.0% | |
| GTGTGTGTGTGTGTGTGGGG+GGG | - | chr1_3:52279282-52279301 | None:intergenic | 60.0% | |
| CCAAAGGGGCAACCGCTTGT+CGG | - | chr1_3:52279535-52279554 | None:intergenic | 60.0% | |
| ATGGACATGGATGCGAGCCG+AGG | - | chr1_3:52279622-52279641 | None:intergenic | 60.0% | |
| GGTCATGGTGCTCTCCCTCA+TGG | + | chr1_3:52279673-52279692 | Msa0124490:intron | 60.0% | |
| GAACCAGCAAGCTCTTCCGG+AGG | - | chr1_3:52280677-52280696 | None:intergenic | 60.0% | |
| CACGGGCCATGCCAACATTC+TGG | + | chr1_3:52281168-52281187 | Msa0124490:intron | 60.0% | |
| CGTGCCAACCTTCTGGTCAC+AGG | + | chr1_3:52281227-52281246 | Msa0124490:intron | 60.0% | |
| !! | TTGACTCGGGAAGACTCCGG+AGG | + | chr1_3:52281814-52281833 | Msa0124490:intron | 60.0% |
| ! | TGACTCGGGAAGACTCCGGA+GGG | + | chr1_3:52281815-52281834 | Msa0124490:intron | 60.0% |
| GGAAGACTCCGGAGGGTTGT+GGG | + | chr1_3:52281822-52281841 | Msa0124490:intron | 60.0% | |
| GAAGACTCCGGAGGGTTGTG+GGG | + | chr1_3:52281823-52281842 | Msa0124490:intron | 60.0% | |
| ACCTCTTCCCCACAACCCTC+CGG | - | chr1_3:52281833-52281852 | None:intergenic | 60.0% | |
| CCCCCTTTCACCAGCTTGTC+AGG | - | chr1_3:52282230-52282249 | None:intergenic | 60.0% | |
| !!! | AGTTTTTGGCGCCGTTGCCG+GGG | - | chr1_3:52282465-52282484 | None:intergenic | 60.0% |
| ! | GAGACTTCTGGAGGGTGGCA+CGG | + | chr1_3:52278042-52278061 | Msa0124490:intron | 60.0% |
| GGCCGTGCCACATATTGGCA+CGG | + | chr1_3:52278063-52278082 | Msa0124490:intron | 60.0% | |
| GCCGTGCCACATATTGGCAC+GGG | + | chr1_3:52278064-52278083 | Msa0124490:intron | 60.0% | |
| GCCCGTGCCAATATGTGGCA+CGG | - | chr1_3:52278068-52278087 | None:intergenic | 60.0% | |
| GCGAGCTGCTTCCTTGGAGT+CGG | - | chr1_3:52283751-52283770 | None:intergenic | 60.0% | |
| !! | TTGGTGGCGAGCTGCTTCCT+TGG | - | chr1_3:52283757-52283776 | None:intergenic | 60.0% |
| AAGGAAGCAGCTCGCCACCA+AGG | + | chr1_3:52283756-52283775 | Msa0124490:intron | 60.0% | |
| GCGGTGAACGGTGGTTACCT+TGG | - | chr1_3:52283776-52283795 | None:intergenic | 60.0% | |
| TCAGTTACGGCGGTGAACGG+TGG | - | chr1_3:52283785-52283804 | None:intergenic | 60.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr1_3:52283933-52283952 | None:intergenic | 60.0% |
| CGACGGTTCCAGGACGGTAA+CGG | - | chr1_3:52283938-52283957 | None:intergenic | 60.0% | |
| GAAGTGCGACGGTTCCAGGA+CGG | - | chr1_3:52283944-52283963 | None:intergenic | 60.0% | |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr1_3:52283943-52283962 | Msa0124490:CDS | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr1_3:52283948-52283967 | None:intergenic | 60.0% | |
| GGAAGCAGCTGAGGCTTACC+TGG | + | chr1_3:52285337-52285356 | Msa0124490:CDS | 60.0% | |
| GCAGCTGAGGCTTACCTGGT+TGG | + | chr1_3:52285341-52285360 | Msa0124490:CDS | 60.0% | |
| GGCACGGCCGTGCCACATAT+TGG | + | chr1_3:52278058-52278077 | Msa0124490:intron | 65.0% | |
| TGTGTGTGTGTGTGGGGGGG+GGG | - | chr1_3:52279279-52279298 | None:intergenic | 65.0% | |
| GTGTGTGTGTGTGTGGGGGG+GGG | - | chr1_3:52279280-52279299 | None:intergenic | 65.0% | |
| CCGACAAGCGGTTGCCCCTT+TGG | + | chr1_3:52279532-52279551 | Msa0124490:intron | 65.0% | |
| AGGAGGCTAGAGGTCGGGCA+CGG | + | chr1_3:52281130-52281149 | Msa0124490:intron | 65.0% | |
| TGTTGGCATGGCCCGTGCCA+AGG | - | chr1_3:52281165-52281184 | None:intergenic | 65.0% | |
| GGGAAGACTCCGGAGGGTTG+TGG | + | chr1_3:52281821-52281840 | Msa0124490:intron | 65.0% | |
| TCCGGAGGGTTGTGGGGAAG+AGG | + | chr1_3:52281829-52281848 | Msa0124490:intron | 65.0% | |
| GGCACGGCCGTGCCACATAT+TGG | + | chr1_3:52278058-52278077 | Msa0124490:intron | 65.0% | |
| GCACGGCCCGTGCCAATATG+TGG | - | chr1_3:52283417-52283436 | None:intergenic | 65.0% | |
| !! | GTGGGATTGCGCCGACTCCA+AGG | + | chr1_3:52283737-52283756 | Msa0124490:intron | 65.0% |
| CGCGGTGAACGTGCTTAGGG+TGG | + | chr1_3:52285449-52285468 | Msa0124490:exon | 65.0% | |
| TGTGTGTGTGTGGGGGGGGG+GGG | - | chr1_3:52279277-52279296 | None:intergenic | 70.0% | |
| GTGTGTGTGTGTGGGGGGGG+GGG | - | chr1_3:52279278-52279297 | None:intergenic | 70.0% | |
| GGATGCGAGCCGAGGTCGAG+AGG | - | chr1_3:52279614-52279633 | None:intergenic | 70.0% | |
| GGCCCTCCGGAAGAGCTTGC+TGG | + | chr1_3:52280671-52280690 | Msa0124490:intron | 70.0% | |
| CGGCCGTGCCAACCTTGGCA+CGG | + | chr1_3:52281150-52281169 | Msa0124490:intron | 70.0% | |
| GGCCGTGCCAACCTTGGCAC+GGG | + | chr1_3:52281151-52281170 | Msa0124490:intron | 70.0% | |
| GGCCCGTGCCAAGGTTGGCA+CGG | - | chr1_3:52281156-52281175 | None:intergenic | 70.0% | |
| GGCATGGCCCGTGCCAAGGT+TGG | - | chr1_3:52281161-52281180 | None:intergenic | 70.0% | |
| GCACGGCCGTGCCAACCTTC+TGG | + | chr1_3:52281220-52281239 | Msa0124490:intron | 70.0% | |
| TGTGTGTGTGGGGGGGGGGG+GGG | - | chr1_3:52279275-52279294 | None:intergenic | 75.0% | |
| GTGTGTGTGTGGGGGGGGGG+GGG | - | chr1_3:52279276-52279295 | None:intergenic | 75.0% | |
| GGGCACGGCCGTGCCAACCT+TGG | + | chr1_3:52281145-52281164 | Msa0124490:intron | 75.0% | |
| ! | TGTGTGTGGGGGGGGGGGGG+GGG | - | chr1_3:52279273-52279292 | None:intergenic | 80.0% |
| ! | GTGTGTGTGGGGGGGGGGGG+GGG | - | chr1_3:52279274-52279293 | None:intergenic | 80.0% |
| ! | TGTGTGGGGGGGGGGGGGGG+GGG | - | chr1_3:52279271-52279290 | None:intergenic | 85.0% |
| ! | GTGTGTGGGGGGGGGGGGGG+GGG | - | chr1_3:52279272-52279291 | None:intergenic | 85.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | - | chr1_3:52279269-52279288 | None:intergenic | 90.0% |
| ! | GTGTGGGGGGGGGGGGGGGG+GGG | - | chr1_3:52279270-52279289 | None:intergenic | 90.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr1_3:52279268-52279287 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52275497 | 52285716 | 52275497 | ID=Msa0124490;Name=Msa0124490 |
| chr1_3 | mRNA | 52275497 | 52285716 | 52275497 | ID=Msa0124490-mRNA-1;Parent=Msa0124490;Name=Msa0124490-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.66|0.75|0.75|1|1|4|250|114 |
| chr1_3 | exon | 52275497 | 52275502 | 52275497 | ID=Msa0124490-mRNA-1:exon:16000;Parent=Msa0124490-mRNA-1 |
| chr1_3 | exon | 52283888 | 52283964 | 52283888 | ID=Msa0124490-mRNA-1:exon:16001;Parent=Msa0124490-mRNA-1 |
| chr1_3 | exon | 52285104 | 52285194 | 52285104 | ID=Msa0124490-mRNA-1:exon:16002;Parent=Msa0124490-mRNA-1 |
| chr1_3 | exon | 52285296 | 52285716 | 52285296 | ID=Msa0124490-mRNA-1:exon:16003;Parent=Msa0124490-mRNA-1 |
| chr1_3 | CDS | 52275497 | 52275502 | 52275497 | ID=Msa0124490-mRNA-1:cds;Parent=Msa0124490-mRNA-1 |
| chr1_3 | CDS | 52283888 | 52283964 | 52283888 | ID=Msa0124490-mRNA-1:cds;Parent=Msa0124490-mRNA-1 |
| chr1_3 | CDS | 52285104 | 52285194 | 52285104 | ID=Msa0124490-mRNA-1:cds;Parent=Msa0124490-mRNA-1 |
| chr1_3 | CDS | 52285296 | 52285466 | 52285296 | ID=Msa0124490-mRNA-1:cds;Parent=Msa0124490-mRNA-1 |
| chr1_3 | three_prime_UTR | 52285467 | 52285716 | 52285467 | ID=Msa0124490-mRNA-1:three_prime_utr;Parent=Msa0124490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
