AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125460 MtrunA17_Chr1g0186411 97.792 1132 23 2 1 1131 1 1131 0.0 2294
Msa0125460 MtrunA17_Chr1g0168221 70.406 1159 290 21 1 1130 1 1135 0.0 1483
Msa0125460 MtrunA17_Chr1g0186421 84.874 357 39 2 1 355 1 344 0.0 599
Msa0125460 MtrunA17_Chr8g0380881 34.188 234 123 4 170 403 15 217 4.05e-28 119
Msa0125460 MtrunA17_Chr5g0443161 39.683 126 71 3 62 183 33 157 7.41e-24 102
Msa0125460 MtrunA17_Chr5g0439971 41.667 132 67 5 62 187 61 188 7.24e-22 102
Msa0125460 MtrunA17_Chr3g0119031 40.625 128 70 4 62 185 56 181 2.59e-21 100
Msa0125460 MtrunA17_Chr4g0035371 25.956 366 214 11 48 408 20 333 4.72e-21 95.9
Msa0125460 MtrunA17_Chr1g0170261 41.221 131 66 6 61 185 58 183 4.40e-20 97.1
Msa0125460 MtrunA17_Chr5g0442971 43.902 82 44 1 53 134 39 118 7.13e-17 85.9
Msa0125460 MtrunA17_Chr5g0443194 35.556 135 77 5 63 191 20 150 3.73e-16 82.8
Msa0125460 MtrunA17_Chr1g0166871 29.577 142 94 4 51 187 2 142 5.22e-14 74.3
Msa0125460 MtrunA17_Chr8g0380871 32.237 152 74 3 256 407 1 123 1.39e-13 69.3
Msa0125460 MtrunA17_Chr3g0137501 31.757 148 78 6 61 190 405 547 6.96e-13 73.6
Msa0125460 MtrunA17_Chr3g0137501 30.534 131 84 4 65 188 71 201 7.35e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125460 AT1G04300.1 50.343 1166 450 34 1 1130 1 1073 0.0 891
Msa0125460 AT1G04300.3 50.000 1174 450 35 1 1130 1 1081 0.0 884
Msa0125460 AT1G04300.4 48.841 1165 450 34 1 1130 1 1054 0.0 851
Msa0125460 AT5G43560.2 48.395 1153 473 32 1 1130 1 1054 0.0 812
Msa0125460 AT5G43560.1 48.395 1153 473 32 1 1130 1 1054 0.0 812
Msa0125460 AT1G04300.5 48.737 1069 426 31 91 1130 68 1043 0.0 777
Msa0125460 AT1G04300.2 46.747 1076 443 34 92 1130 14 996 0.0 711
Msa0125460 AT1G04300.6 43.154 913 395 32 248 1130 1 819 4.01e-157 488
Msa0125460 AT5G52330.4 65.854 369 113 5 49 409 7 370 4.32e-152 460
Msa0125460 AT5G52330.3 65.854 369 113 5 49 409 7 370 4.32e-152 460
Msa0125460 AT5G52330.1 65.854 369 113 5 49 409 7 370 4.32e-152 460
Msa0125460 AT5G52330.2 65.741 324 98 5 94 409 1 319 1.73e-127 394
Msa0125460 AT4G16045.1 41.304 368 133 10 98 412 23 360 4.60e-66 228
Msa0125460 AT3G11910.3 41.406 128 69 4 62 185 55 180 9.25e-21 99.8
Msa0125460 AT3G11910.1 41.406 128 69 4 62 185 55 180 9.25e-21 99.8
Msa0125460 AT3G11910.4 41.406 128 69 4 62 185 54 179 9.32e-21 99.8
Msa0125460 AT3G11910.2 41.406 128 69 4 62 185 54 179 9.32e-21 99.8
Msa0125460 AT5G06600.3 39.310 145 76 6 47 185 43 181 2.49e-20 98.2
Msa0125460 AT5G06600.1 39.310 145 76 6 47 185 43 181 2.85e-20 97.8
Msa0125460 AT5G06600.2 39.310 145 76 6 47 185 42 180 2.87e-20 97.8
Msa0125460 AT3G58210.1 37.984 129 76 3 62 186 8 136 2.38e-16 82.0
Msa0125460 AT3G58250.1 34.615 130 79 4 62 186 10 138 2.69e-15 79.0
Msa0125460 AT3G58360.1 34.586 133 81 4 58 186 4 134 1.01e-13 73.9
Msa0125460 AT3G58220.3 32.061 131 82 4 62 187 12 140 1.71e-12 69.3
Msa0125460 AT3G58220.1 32.061 131 82 4 62 187 12 140 1.84e-12 70.9
Msa0125460 AT3G58220.2 32.061 131 82 4 62 187 12 140 2.25e-12 71.2
Msa0125460 AT1G69650.1 29.545 132 86 4 60 186 156 285 2.36e-12 69.7
Msa0125460 AT3G58220.4 32.061 131 82 4 62 187 12 140 2.59e-12 70.5
Msa0125460 AT2G42460.1 32.558 129 85 2 58 185 5 132 4.17e-12 68.9
Msa0125460 AT3G58220.5 31.387 137 87 4 62 192 12 147 4.67e-12 68.9
Msa0125460 AT2G25320.1 29.936 157 86 7 52 190 394 544 6.28e-12 70.9
Msa0125460 AT2G25320.1 28.369 141 94 4 55 188 65 205 4.14e-11 68.2
Msa0125460 AT2G25320.3 29.936 157 86 7 52 190 395 545 6.33e-12 70.9
Msa0125460 AT2G25320.3 28.369 141 94 4 55 188 66 206 4.21e-11 68.2
Msa0125460 AT3G58370.1 37.662 77 48 0 58 134 5 81 7.97e-12 68.2
Msa0125460 AT2G25320.2 29.936 157 86 7 52 190 395 545 8.08e-12 70.5
Msa0125460 AT2G25320.2 28.369 141 94 4 55 188 66 206 4.70e-11 68.2
Msa0125460 AT3G58350.2 32.824 131 81 3 62 186 8 137 5.82e-11 65.5
Msa0125460 AT3G58350.1 32.824 131 81 3 62 186 8 137 5.82e-11 65.5
Msa0125460 AT3G27040.1 25.781 128 90 2 62 188 9 132 5.86e-11 65.1

Find 347 sgRNAs with CRISPR-Local

Find 1107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTACTCCTTTGGTTTC+TGG 0.069611 1_3:+53948545 Msa0125460:CDS
TTTGCAGTTTCTTTGCTTTC+TGG 0.085028 1_3:+53940001 Msa0125460:intron
ATCTTACCTTCGTACGATTT+TGG 0.088370 1_3:-53940338 None:intergenic
CATCAACACCATTGTCTTCT+TGG 0.115326 1_3:-53946621 None:intergenic
GAGTAATAATCTGGATAATA+TGG 0.173668 1_3:-53949505 None:intergenic
GAAAGGCGTCTCACAGAATT+AGG 0.177263 1_3:+53941651 Msa0125460:CDS
CAAAATTGAGGTTGCTTATC+AGG 0.185875 1_3:+53943169 Msa0125460:CDS
CAGATACATTGCACCGATTT+TGG 0.189682 1_3:+53938786 Msa0125460:intron
GAGATACTAGTCCTGTTAAT+TGG 0.200866 1_3:+53946770 Msa0125460:CDS
CTTGCCTGCTAGGTGACTTC+TGG 0.216045 1_3:-53946999 None:intergenic
GTTGCCTTGATTGTCATTAT+AGG 0.229556 1_3:+53939110 Msa0125460:CDS
ATCTTGCAGTTGAAGTCTTC+TGG 0.232219 1_3:-53948478 None:intergenic
TTATGCATGTTTGGCATTCT+AGG 0.235777 1_3:+53949748 Msa0125460:three_prime_UTR
TCTGGTGCTGCAGCAGATGC+TGG 0.245138 1_3:+53947180 Msa0125460:CDS
TCCAGATTATTACTCAAATA+TGG 0.260146 1_3:+53949513 Msa0125460:CDS
CGCTACTCTTTCACGATTCC+AGG 0.265808 1_3:+53935561 Msa0125460:five_prime_UTR
ATGGAATAATGTCTGATAAA+AGG 0.277292 1_3:+53946869 Msa0125460:CDS
AGTCTTCTGGATCTCAGTTT+TGG 0.278484 1_3:-53948465 None:intergenic
GTCTGAAAAGCCTGATACTA+TGG 0.278933 1_3:+53946678 Msa0125460:CDS
CCCAACCTTTCTTGCTAGTC+TGG 0.285985 1_3:-53940176 None:intergenic
ATTATAGGAGAGAACTTGTT+AGG 0.287622 1_3:+53939125 Msa0125460:CDS
GCCACTACACAGTAGATCTA+TGG 0.288138 1_3:+53949015 Msa0125460:CDS
AAAGACGGCCAGGGCAAGTT+TGG 0.292974 1_3:+53949156 Msa0125460:CDS
AGTCACTTCTACTTTGGTTA+TGG 0.301432 1_3:+53940119 Msa0125460:CDS
AAGGCCTGCTTACAATTTAA+TGG 0.302255 1_3:+53949590 Msa0125460:three_prime_UTR
TTGCAGTTTCTTTGCTTTCT+GGG 0.302983 1_3:+53940002 Msa0125460:intron
CAATGGTGTTGATGAGAAAA+TGG 0.325729 1_3:+53946630 Msa0125460:CDS
AATCGACAATTCAGCTTTCC+TGG 0.326887 1_3:+53949214 Msa0125460:CDS
GAGTTCCCAGCCTGCACATC+CGG 0.327811 1_3:+53949052 Msa0125460:CDS
CATTCTAGCTCGTCGTGTTC+AGG 0.341949 1_3:+53948749 Msa0125460:CDS
CCAAAGAAGTCAAAATATTC+TGG 0.341966 1_3:+53938684 Msa0125460:CDS
TTCTGATGTGTCTGACTCTC+TGG 0.351361 1_3:+53946708 Msa0125460:CDS
TTGTCCTTGCTCATATATTC+AGG 0.360537 1_3:+53941694 Msa0125460:CDS
GAAAGGTTGGGTAAAATTGT+TGG 0.363996 1_3:+53940188 Msa0125460:CDS
TATGTCAATGGACAGGTTGA+TGG 0.368319 1_3:+53949400 Msa0125460:CDS
GAAAGAAGTCACTTCTACTT+TGG 0.368563 1_3:+53940113 Msa0125460:CDS
GCCATATTTGAGTAATAATC+TGG 0.370173 1_3:-53949514 None:intergenic
GGCCCTCAAATGGTTCTTAG+AGG 0.372720 1_3:+53949566 Msa0125460:CDS
GCCATGATGCCTCTTCTTCA+CGG 0.372818 1_3:-53943226 None:intergenic
CCAACTTCGTCTTTGATGTT+GGG 0.376546 1_3:-53948227 None:intergenic
CTGGTGCTGCAGCAGATGCT+GGG 0.378446 1_3:+53947181 Msa0125460:CDS
GAAATATCTTCCATAGTATC+AGG 0.379484 1_3:-53946688 None:intergenic
CCCAACTTCGTCTTTGATGT+TGG 0.387162 1_3:-53948228 None:intergenic
GATGTTTCATCCAGACAAAA+TGG 0.387230 1_3:+53946850 Msa0125460:CDS
TCTTCGTCAGTGTCCCAATA+AGG 0.387339 1_3:-53936244 None:intergenic
GATCCTCGACCAGTTCTTGC+AGG 0.388433 1_3:+53949263 Msa0125460:CDS
GTTATGGATTCCTTGTATAG+TGG 0.388963 1_3:+53940135 Msa0125460:CDS
CTCCTTTGGTTTCTGGTCCC+AGG 0.389241 1_3:+53948552 Msa0125460:CDS
AAGACCTTCAAGTACTCCTT+TGG 0.390403 1_3:+53948538 Msa0125460:CDS
TTTGGAAGAAGGAGCATGAC+TGG 0.391135 1_3:+53938804 Msa0125460:CDS
TCAATGGTTATACTGTATTC+AGG 0.393091 1_3:+53949545 Msa0125460:CDS
GGGCTGATCATACATGCTTC+TGG 0.393844 1_3:-53948954 None:intergenic
AACTGCTCCTGTGGTCTCAA+TGG 0.394649 1_3:+53948577 Msa0125460:CDS
ATTACTGCGAAGTTCCCTTT+TGG 0.396432 1_3:-53937601 None:intergenic
GTCCAGTGTGGTGTTCCCTT+TGG 0.398637 1_3:+53948866 Msa0125460:CDS
TTGCCTGCTAGGTGACTTCT+GGG 0.399956 1_3:-53946998 None:intergenic
TTTGAGAACTTTCAATCCAC+TGG 0.401010 1_3:-53948922 None:intergenic
AACCATGACAAACTTCTTCC+AGG 0.404435 1_3:+53938499 Msa0125460:CDS
CTTCGTCAGTGTCCCAATAA+GGG 0.408044 1_3:-53936243 None:intergenic
ATGAGTGCAGCTGGCCGGTT+AGG 0.409024 1_3:+53948629 Msa0125460:CDS
AGTTACTGAAATGCTTCATC+TGG 0.409769 1_3:+53946735 Msa0125460:CDS
GGATTCGAGTGTCTGAGAAA+TGG 0.410400 1_3:+53949178 Msa0125460:CDS
AAAATAGATGGTCGGCCATC+TGG 0.411364 1_3:+53947162 Msa0125460:CDS
AGAATTAGGGCGTAGGACTT+TGG 0.412085 1_3:+53941665 Msa0125460:CDS
GCATCAGTATCCCAATTAAC+AGG 0.413324 1_3:-53946781 None:intergenic
AAGAGTAGCGGTTGTGAAAA+GGG 0.414324 1_3:-53935548 None:intergenic
CATGCTCCTTCTTCCAAAAT+CGG 0.416539 1_3:-53938799 None:intergenic
AAGACGGCCAGGGCAAGTTT+GGG 0.423917 1_3:+53949157 Msa0125460:CDS
AAGGCATGCTAGTAACTTGC+GGG 0.425884 1_3:-53949378 None:intergenic
GGTTGGACAAATAAAATAGA+TGG 0.426465 1_3:+53947150 Msa0125460:CDS
CTGAACACGACGAGCTAGAA+TGG 0.426492 1_3:-53948748 None:intergenic
CAAAGTTACCATCATGATCA+TGG 0.427845 1_3:+53949298 Msa0125460:CDS
AAAGGGTTCAATATATTCAA+TGG 0.430850 1_3:+53949939 Msa0125460:three_prime_UTR
TTTCTTGATTAGGGAATGGC+TGG 0.434834 1_3:+53936103 Msa0125460:intron
AGATACTAGTCCTGTTAATT+GGG 0.435612 1_3:+53946771 Msa0125460:CDS
CGCAGTAATGCATTTGAGGT+TGG 0.436130 1_3:+53937615 Msa0125460:CDS
ATCAAAATCATGACTTGTAC+AGG 0.437256 1_3:+53948993 Msa0125460:CDS
TTCCCTCTAAGAACCATTTG+AGG 0.440624 1_3:-53949569 None:intergenic
ACGCTCGAGCCTGCAAGAAC+TGG 0.442802 1_3:-53949272 None:intergenic
TTTCCATTCTATCAGAGCTA+TGG 0.444905 1_3:-53948835 None:intergenic
GGCGATGACACCAAGGTAGA+TGG 0.445101 1_3:-53948800 None:intergenic
ATCCTACAGAAATGCTATCA+TGG 0.445419 1_3:+53948691 Msa0125460:CDS
ATTCAGCTTTCCTGGAGACT+TGG 0.445504 1_3:+53949222 Msa0125460:CDS
AAAGAGTAGCGGTTGTGAAA+AGG 0.446833 1_3:-53935549 None:intergenic
TGACGCCCGGATGTGCAGGC+TGG 0.448831 1_3:-53949058 None:intergenic
ACTTCCTCCAAAAGATGAAA+AGG 0.449814 1_3:+53940311 Msa0125460:CDS
GGGGTTATTAACAAAGAGTC+TGG 0.449839 1_3:+53947201 Msa0125460:CDS
AAGCTAAATACTTGCCTGCT+AGG 0.450289 1_3:-53947009 None:intergenic
AAGCTCAAGTTCAAGTCATC+AGG 0.450590 1_3:+53938900 Msa0125460:CDS
TGCAGTTTCTTTGCTTTCTG+GGG 0.450947 1_3:+53940003 Msa0125460:intron
ATCCCATAGCTCTGATAGAA+TGG 0.452132 1_3:+53948832 Msa0125460:CDS
CATCTAGGCGCCGTATGTCT+AGG 0.452899 1_3:+53940040 Msa0125460:CDS
GACCCGTGGCCACCTGCCAT+TGG 0.454994 1_3:-53949435 None:intergenic
TTCCTTGTATAGTGGATTGA+AGG 0.459509 1_3:+53940143 Msa0125460:CDS
GAGGGAGGAGAGGACTACTA+TGG 0.459574 1_3:+53946582 Msa0125460:CDS
ATTCTGACGCCCGGATGTGC+AGG 0.460390 1_3:-53949062 None:intergenic
GACGCCCGGATGTGCAGGCT+GGG 0.460434 1_3:-53949057 None:intergenic
GCTGACAAGGGTTACGGCCT+TGG 0.460546 1_3:-53949855 None:intergenic
TCCATAGCTGACAAGGGTTA+CGG 0.460702 1_3:-53949861 None:intergenic
TGGATCTTTATCAGTCTGTT+GGG 0.463001 1_3:-53948402 None:intergenic
GTCACTAAAACATCTTCAAA+TGG 0.466515 1_3:+53948377 Msa0125460:CDS
GATTCGAGTGTCTGAGAAAT+GGG 0.468823 1_3:+53949179 Msa0125460:CDS
CCGGGGAAGCATTGGCGGAA+TGG 0.469382 1_3:+53936176 Msa0125460:CDS
GAGGAAAGACGAAGCAAGCT+TGG 0.469755 1_3:+53939190 Msa0125460:CDS
TGAGTGGCGGGTGAGGGATC+AGG 0.470906 1_3:-53948653 None:intergenic
GCCGTAACCCTTGTCAGCTA+TGG 0.471316 1_3:+53949860 Msa0125460:three_prime_UTR
TCCTTCTCAACACGAACAAT+AGG 0.471800 1_3:-53940231 None:intergenic
GAGCTATGGGATAGAAAGAT+TGG 0.472495 1_3:-53948821 None:intergenic
ATCAATAAGACATTTGCAAA+TGG 0.472595 1_3:+53949885 Msa0125460:three_prime_UTR
TCCTACAGAAATGCTATCAT+GGG 0.473286 1_3:+53948692 Msa0125460:CDS
GGAGTGTTGAGTGAGGAGTC+TGG 0.475078 1_3:+53936124 Msa0125460:CDS
ATACTGTTGGAAAGACGGCC+AGG 0.475970 1_3:+53949146 Msa0125460:CDS
TCACGCGGGCAGCATTCTAC+CGG 0.476329 1_3:+53936157 Msa0125460:CDS
ATGGATCTTTATCAGTCTGT+TGG 0.478053 1_3:-53948403 None:intergenic
AAACCAATGGCAGGTGGCCA+CGG 0.478223 1_3:+53949432 Msa0125460:CDS
TAATGTATTCGAGGAAATGT+TGG 0.478602 1_3:+53949625 Msa0125460:three_prime_UTR
ACTTCGCAGTAATGCATTTG+AGG 0.479668 1_3:+53937611 Msa0125460:CDS
GTGAGGGATCAGGACCTAAC+CGG 0.481848 1_3:-53948643 None:intergenic
GCACGCTCAATGAGTGCAGC+TGG 0.482026 1_3:+53948620 Msa0125460:CDS
TCCCAGGCCAACTGCTCCTG+TGG 0.483261 1_3:+53948568 Msa0125460:CDS
AGTAAAGGACAAAGGGAGGG+AGG 0.483426 1_3:+53946567 Msa0125460:CDS
GCATTCTACCGGGGAAGCAT+TGG 0.483758 1_3:+53936168 Msa0125460:CDS
TTGTTACAAGCCTCAGTTGG+AGG 0.484425 1_3:-53946817 None:intergenic
TTCCATTCTATCAGAGCTAT+GGG 0.486767 1_3:-53948834 None:intergenic
AGAGAAAGAGAGAGAAGTGA+AGG 0.487200 1_3:-53935498 None:intergenic
GACTACTGATGGCAAAGAAT+CGG 0.487737 1_3:-53946932 None:intergenic
TGAGAAGGATATGTTTGTAC+TGG 0.487924 1_3:+53940245 Msa0125460:CDS
TCTTCCGAGCAGGTGGAGAA+TGG 0.488344 1_3:+53936202 Msa0125460:CDS
GGAATGGAGGTCTTCCGAGC+AGG 0.492175 1_3:+53936192 Msa0125460:CDS
GCCAGACTAGCAAGAAAGGT+TGG 0.492583 1_3:+53940175 Msa0125460:CDS
GACCACAGGAGCAGTTGGCC+TGG 0.492606 1_3:-53948570 None:intergenic
CACGCGGGCAGCATTCTACC+GGG 0.493044 1_3:+53936158 Msa0125460:CDS
CCCAACATCAAAGACGAAGT+TGG 0.493887 1_3:+53948227 Msa0125460:CDS
AAAGGCGTCTCACAGAATTA+GGG 0.494724 1_3:+53941652 Msa0125460:CDS
GGGAAGTTGATCAAACATCT+AGG 0.496570 1_3:+53940025 Msa0125460:CDS
ATTTGACCAGGCGAGCTACT+AGG 0.496816 1_3:-53948314 None:intergenic
GCGACCATTAAATTGTAAGC+AGG 0.497051 1_3:-53949594 None:intergenic
CCAACATCAAAGACGAAGTT+GGG 0.497477 1_3:+53948228 Msa0125460:CDS
ACTAGCATGCCTTATGTCAA+TGG 0.497740 1_3:+53949388 Msa0125460:CDS
GCAGTTTCTTTGCTTTCTGG+GGG 0.497810 1_3:+53940004 Msa0125460:intron
AACTTGTGAGGCAGAGGTGA+AGG 0.498028 1_3:-53948432 None:intergenic
CAATGTGACAACAGCACCCT+CGG 0.499530 1_3:-53947250 None:intergenic
AGTAATAATCTGGATAATAT+GGG 0.500186 1_3:-53949504 None:intergenic
CAAATGTAGAACAAATTTGT+CGG 0.500193 1_3:+53939158 Msa0125460:CDS
ATGACTATGAGTGGCGGGTG+AGG 0.500405 1_3:-53948660 None:intergenic
GTTTAACCAGATTACCAAAA+GGG 0.502427 1_3:+53937587 Msa0125460:CDS
TCCCTCTAAGAACCATTTGA+GGG 0.506141 1_3:-53949568 None:intergenic
ATAAGAAAGTAAAGGACAAA+GGG 0.506925 1_3:+53946560 Msa0125460:CDS
ATGCCTGCATACAATAGATC+AGG 0.507001 1_3:-53949457 None:intergenic
ACTGTATTCAGGCCCTCAAA+TGG 0.507598 1_3:+53949556 Msa0125460:CDS
ACCACAGGAGCAGTTGGCCT+GGG 0.507928 1_3:-53948569 None:intergenic
GAGTCTGGAAGTGGAAAGGC+TGG 0.509160 1_3:+53947216 Msa0125460:CDS
TTGAGGTTGGAGGCTACAAA+TGG 0.511283 1_3:+53937628 Msa0125460:CDS
GCTCAATGAGTGCAGCTGGC+CGG 0.512291 1_3:+53948624 Msa0125460:CDS
CTCGAATCCCAAACTTGCCC+TGG 0.513071 1_3:-53949164 None:intergenic
CTTGAAGGTCTTGAGATAGT+AGG 0.514525 1_3:-53948527 None:intergenic
AACCAATGGCAGGTGGCCAC+GGG 0.514614 1_3:+53949433 Msa0125460:CDS
TGAAAGTTCTCAAAGAGAAT+CGG 0.514881 1_3:+53948931 Msa0125460:CDS
AGTTGATAGAGGATAAAGCT+AGG 0.516247 1_3:+53939215 Msa0125460:CDS
CATTGAAGGATCGGTTAAAG+TGG 0.517473 1_3:+53947268 Msa0125460:CDS
CCATTCCGCCAATGCTTCCC+CGG 0.520119 1_3:-53936176 None:intergenic
GGGTGCTGTTGTCACATTGA+AGG 0.520228 1_3:+53947254 Msa0125460:CDS
TTGGAAGAAGGAGCATGACT+GGG 0.520284 1_3:+53938805 Msa0125460:CDS
TTCTACCGGGGAAGCATTGG+CGG 0.520804 1_3:+53936171 Msa0125460:CDS
GAAACCAAAGGAGTACTTGA+AGG 0.521160 1_3:-53948542 None:intergenic
ACCTATTGTTCGTGTTGAGA+AGG 0.521433 1_3:+53940230 Msa0125460:CDS
AGGACAAAGGGAGGGAGGAG+AGG 0.522174 1_3:+53946572 Msa0125460:CDS
AGAAAGTAAAGGACAAAGGG+AGG 0.524463 1_3:+53946563 Msa0125460:CDS
GTCATGATTGACTCCTACAA+GGG 0.525195 1_3:+53946952 Msa0125460:CDS
AGTAATGCATTTGAGGTTGG+AGG 0.525327 1_3:+53937618 Msa0125460:CDS
TAGTGGATTGAAGGCTCTTG+AGG 0.525781 1_3:+53940152 Msa0125460:CDS
TCCTGTGTTCTCAAGCCAAA+GGG 0.526908 1_3:-53948881 None:intergenic
AGAAGGAGCATGACTGGGGA+TGG 0.526926 1_3:+53938810 Msa0125460:CDS
TCAACCTGTCCATTGACATA+AGG 0.527082 1_3:-53949397 None:intergenic
ATAGCATTTCTGTAGGATTG+AGG 0.527510 1_3:-53948686 None:intergenic
AGTTTAACCAGATTACCAAA+AGG 0.528334 1_3:+53937586 Msa0125460:CDS
CCTTTGTTACAAGCCTCAGT+TGG 0.529254 1_3:-53946820 None:intergenic
AGTCCTCCTAGTAGCTCGCC+TGG 0.531867 1_3:+53948308 Msa0125460:CDS
GGTCAGACTGGCAGCAGTTG+AGG 0.532385 1_3:-53948726 None:intergenic
CCAGACTAGCAAGAAAGGTT+GGG 0.532411 1_3:+53940176 Msa0125460:CDS
TGAACACGACGAGCTAGAAT+GGG 0.532573 1_3:-53948747 None:intergenic
AAAGTTTATGGAGCTGTCAA+AGG 0.536521 1_3:+53938835 Msa0125460:CDS
ATCTAGGCGCCGTATGTCTA+GGG 0.536770 1_3:+53940041 Msa0125460:CDS
TCATTTGCATCCAAGTCTCC+AGG 0.537872 1_3:-53949232 None:intergenic
ACTTGTGAGGCAGAGGTGAA+GGG 0.538062 1_3:-53948431 None:intergenic
ATTAACAAAGAGTCTGGAAG+TGG 0.538116 1_3:+53947207 Msa0125460:CDS
AATTGTCGATTTAGCGATTG+CGG 0.539861 1_3:-53949202 None:intergenic
AAGCCCAGAAGTCACCTAGC+AGG 0.540234 1_3:+53946995 Msa0125460:CDS
CTTGATGATGAGCATACTGT+TGG 0.540637 1_3:+53949133 Msa0125460:CDS
AGGAAAGACGAAGCAAGCTT+GGG 0.542586 1_3:+53939191 Msa0125460:CDS
TGAGAAAATGGATTCTAATG+AGG 0.543439 1_3:+53946642 Msa0125460:CDS
CAAAACGTGGAGTCAATGAG+AGG 0.543462 1_3:+53943270 Msa0125460:CDS
GCGGAACAATAAGAAAGTAA+AGG 0.545734 1_3:+53946552 Msa0125460:CDS
CTCTCCTATAATGACAATCA+AGG 0.546488 1_3:-53939114 None:intergenic
CAAGCTTGGGAAGTTGATAG+AGG 0.549914 1_3:+53939204 Msa0125460:CDS
CCAACTGAGGCTTGTAACAA+AGG 0.549993 1_3:+53946820 Msa0125460:CDS
GCAGGTCGTTTATGATATCA+AGG 0.551574 1_3:-53949111 None:intergenic
GCACTCATTGAGCGTGCAAG+TGG 0.551953 1_3:-53948614 None:intergenic
GCATCTGCTGCAGCACCAGA+TGG 0.552255 1_3:-53947177 None:intergenic
GAGGGCCAGACTAGCAAGAA+AGG 0.552417 1_3:+53940171 Msa0125460:CDS
AGCCTTCAATCCACTATACA+AGG 0.553501 1_3:-53940145 None:intergenic
CTGTCTTCTCCCTAGACATA+CGG 0.553620 1_3:-53940050 None:intergenic
AGGATAAAGCTAGGTGGTCA+AGG 0.554105 1_3:+53939224 Msa0125460:CDS
CTTGTGAGGCAGAGGTGAAG+GGG 0.554636 1_3:-53948430 None:intergenic
ATTCTATTGAGCGCGATGAA+AGG 0.555828 1_3:+53941634 Msa0125460:CDS
CCCATAGATCTACTGTGTAG+TGG 0.556253 1_3:-53949016 None:intergenic
CTATTCTCAACCATCTACCT+TGG 0.556279 1_3:+53948790 Msa0125460:CDS
GGGAAGCATTGGCGGAATGG+AGG 0.556765 1_3:+53936179 Msa0125460:CDS
TGAGAAGCATGTTGTCAGAA+AGG 0.558629 1_3:+53947293 Msa0125460:CDS
AGTTCCCAGCCTGCACATCC+GGG 0.558647 1_3:+53949053 Msa0125460:CDS
TGACTATGAGTGGCGGGTGA+GGG 0.560104 1_3:-53948659 None:intergenic
CTGTTGTCACATTGAAGGAT+CGG 0.560558 1_3:+53947259 Msa0125460:CDS
GGAGGACTGACAGGTGAAGA+TGG 0.561089 1_3:-53948293 None:intergenic
GGTCCTGATCTATTGTATGC+AGG 0.561180 1_3:+53949454 Msa0125460:CDS
TTATAGGAGAGAACTTGTTA+GGG 0.561821 1_3:+53939126 Msa0125460:CDS
CCCCATGATAGCATTTCTGT+AGG 0.562524 1_3:-53948693 None:intergenic
CCACTACACAGTAGATCTAT+GGG 0.562933 1_3:+53949016 Msa0125460:CDS
ATGGATTGATTACAAACCAA+TGG 0.563373 1_3:+53949419 Msa0125460:CDS
GATGTGTCTGACTCTCTGGA+TGG 0.563518 1_3:+53946712 Msa0125460:CDS
TGATCATCATTAAGACCAGC+GGG 0.563699 1_3:-53948974 None:intergenic
AGAACTCATCCGTGAAGAAG+AGG 0.564259 1_3:+53943217 Msa0125460:CDS
GAGTCAATCATGACTACTGA+TGG 0.564583 1_3:-53946943 None:intergenic
AATATGGCATGTGGTGTCAA+TGG 0.568394 1_3:+53949529 Msa0125460:CDS
TTGAGAACTTTCAATCCACT+GGG 0.570075 1_3:-53948921 None:intergenic
GCGTCAGAATCAAGCGTTGG+TGG 0.570137 1_3:+53949075 Msa0125460:CDS
ATAGCAGCCCTTTCAAGAAG+CGG 0.571322 1_3:-53940282 None:intergenic
TCAACACGAACAATAGGTGC+TGG 0.571875 1_3:-53940225 None:intergenic
ATCCTGTGTTCTCAAGCCAA+AGG 0.572505 1_3:-53948882 None:intergenic
CAGTATGCTCATCATCAAGC+AGG 0.572675 1_3:-53949129 None:intergenic
AGTCATGATTGACTCCTACA+AGG 0.572913 1_3:+53946951 Msa0125460:CDS
TTCGGATGCAATTTGTACCA+AGG 0.573982 1_3:+53949838 Msa0125460:three_prime_UTR
ATGATCATGGATTCCGAGGA+GGG 0.574205 1_3:+53949311 Msa0125460:CDS
GAGCCTGCAAGAACTGGTCG+AGG 0.574834 1_3:-53949266 None:intergenic
TATTTCCCATATAACTCAGA+CGG 0.575403 1_3:-53937546 None:intergenic
AATAAGAAAGTAAAGGACAA+AGG 0.576095 1_3:+53946559 Msa0125460:CDS
GTTGAGAATAGCTAAAGGAC+GGG 0.577262 1_3:-53948778 None:intergenic
AGTGGATTGAAGGCTCTTGA+GGG 0.577394 1_3:+53940153 Msa0125460:CDS
GATTCCATTCTCCACCTGCT+CGG 0.577817 1_3:-53936206 None:intergenic
AGTCAATGAGAGGGAAAAGA+AGG 0.577856 1_3:+53943280 Msa0125460:CDS
AGCCAAAGGGAACACCACAC+TGG 0.578402 1_3:-53948868 None:intergenic
AGTTGTAACTTGTGAGGCAG+AGG 0.578512 1_3:-53948438 None:intergenic
AGGACTACTATGGCTGTGCA+TGG 0.579965 1_3:+53946592 Msa0125460:CDS
CAACGCTTGATTCTGACGCC+CGG 0.579981 1_3:-53949071 None:intergenic
TTCGTCAGTGTCCCAATAAG+GGG 0.580283 1_3:-53936242 None:intergenic
TCCGTGAAGAAGAGGCATCA+TGG 0.580342 1_3:+53943225 Msa0125460:CDS
GAAAGTAAAGGACAAAGGGA+GGG 0.580363 1_3:+53946564 Msa0125460:CDS
CGAGCTAGAATGGGTCAGAC+TGG 0.580946 1_3:-53948738 None:intergenic
CTCGGAATCCATGATCATGA+TGG 0.581744 1_3:-53949306 None:intergenic
GAAGGATATGTTTGTACTGG+TGG 0.582655 1_3:+53940248 Msa0125460:CDS
GAGCTACTAGGAGGACTGAC+AGG 0.582819 1_3:-53948302 None:intergenic
ATTGATATCCATAGCTGACA+AGG 0.582980 1_3:-53949868 None:intergenic
CTTCCTCCAAAAGATGAAAA+GGG 0.583290 1_3:+53940312 Msa0125460:CDS
ATTGAGACCACAGGAGCAGT+TGG 0.583534 1_3:-53948575 None:intergenic
TTGAGTGAGGAGTCTGGAGT+GGG 0.583601 1_3:+53936130 Msa0125460:CDS
CATGCCTTATGTCAATGGAC+AGG 0.583762 1_3:+53949393 Msa0125460:CDS
TTGTTTACTAACATTTGACC+AGG 0.584367 1_3:-53948326 None:intergenic
CACTGCAGGCCAAACAAAAG+CGG 0.584440 1_3:+53946533 Msa0125460:intron
TGAGCATACTGTTGGAAAGA+CGG 0.584991 1_3:+53949141 Msa0125460:CDS
GTAGGATGTAAACTCTGGTG+AGG 0.585371 1_3:+53941599 Msa0125460:intron
TACCTGGAAGAAGTTTGTCA+TGG 0.585884 1_3:-53938501 None:intergenic
ATGGAGGTCTTCCGAGCAGG+TGG 0.588489 1_3:+53936195 Msa0125460:CDS
AGTTATATGGGAAATATACA+TGG 0.588785 1_3:+53937553 Msa0125460:CDS
TCCCTTTGGCTTGAGAACAC+AGG 0.589775 1_3:+53948880 Msa0125460:CDS
CGTTTATGATATCAAGGTGA+GGG 0.589791 1_3:-53949105 None:intergenic
TACTGTTGGAAAGACGGCCA+GGG 0.590278 1_3:+53949147 Msa0125460:CDS
CATCATGATCATGGATTCCG+AGG 0.590749 1_3:+53949307 Msa0125460:CDS
GGGATGAGCTATACCCTCCT+CGG 0.592158 1_3:-53949324 None:intergenic
TTGTGAGGCAGAGGTGAAGG+GGG 0.592920 1_3:-53948429 None:intergenic
TAAGTGAATCAAAATGCCCA+TGG 0.592995 1_3:-53949345 None:intergenic
GAGGCATCATGGCAAGCTGA+AGG 0.593174 1_3:+53943236 Msa0125460:CDS
TGGGTGCAGCAACAAAATTG+AGG 0.593465 1_3:+53943157 Msa0125460:intron
ATGAGAAACACAGAGAATGA+TGG 0.594896 1_3:+53949478 Msa0125460:CDS
GAGGCTTGTAACAAAGGCAT+AGG 0.595450 1_3:+53946826 Msa0125460:CDS
TATAATGACAATCAAGGCAA+CGG 0.596675 1_3:-53939108 None:intergenic
CAAAGAGTCTGGAAGTGGAA+AGG 0.598106 1_3:+53947212 Msa0125460:CDS
GTTTGAACCATTGAGACCAC+AGG 0.598568 1_3:-53948584 None:intergenic
GCCCTCAAATGGTTCTTAGA+GGG 0.602234 1_3:+53949567 Msa0125460:exon
ATTGATTACAAACCAATGGC+AGG 0.603793 1_3:+53949423 Msa0125460:CDS
GTTGAGTGAGGAGTCTGGAG+TGG 0.604091 1_3:+53936129 Msa0125460:CDS
TGGTGCTGCAGCAGATGCTG+GGG 0.604746 1_3:+53947182 Msa0125460:CDS
GGCATAGCATCATGTGACAC+TGG 0.604879 1_3:+53947126 Msa0125460:CDS
CAGTTTCTTTGCTTTCTGGG+GGG 0.606283 1_3:+53940005 Msa0125460:intron
AATAAGACATTTGCAAATGG+CGG 0.606479 1_3:+53949888 Msa0125460:three_prime_UTR
GGTTGAGAATAGCTAAAGGA+CGG 0.607468 1_3:-53948779 None:intergenic
TCAAATGGTTCTTAGAGGGA+AGG 0.607935 1_3:+53949571 Msa0125460:exon
CTTTGCACAGTTTACAATAG+CGG 0.609934 1_3:+53938647 Msa0125460:CDS
AATGGCTGGAGTGTTGAGTG+AGG 0.613657 1_3:+53936117 Msa0125460:exon
GGACTACTATGGCTGTGCAT+GGG 0.614534 1_3:+53946593 Msa0125460:CDS
GCAGCAACAGACGAGAGCAA+AGG 0.616877 1_3:-53935464 None:intergenic
AGCATGTATGATCAGCCCGC+TGG 0.618096 1_3:+53948959 Msa0125460:CDS
GCTGCAGGGAGAAATCAGAC+AGG 0.620230 1_3:+53939080 Msa0125460:intron
GGAGGGTATAGCTCATCCCA+TGG 0.622534 1_3:+53949328 Msa0125460:CDS
GGAACATGACTATGAGTGGC+GGG 0.622775 1_3:-53948665 None:intergenic
GAGCTGTCAAAGGTTAATGA+CGG 0.623255 1_3:+53938845 Msa0125460:CDS
AGATGGTTGAGAATAGCTAA+AGG 0.624909 1_3:-53948783 None:intergenic
ATTGAAGGATCGGTTAAAGT+GGG 0.624959 1_3:+53947269 Msa0125460:CDS
AGAAGTTCATCCTCCAACTG+AGG 0.625395 1_3:+53946807 Msa0125460:CDS
ATCCGAAAAGAGAGGATGCA+TGG 0.625872 1_3:-53949822 None:intergenic
CAAATTGCATCCGAAAAGAG+AGG 0.626551 1_3:-53949830 None:intergenic
GGACGAAGTTGTAACTTGTG+AGG 0.626603 1_3:-53948444 None:intergenic
TAAGGCATGCTAGTAACTTG+CGG 0.627695 1_3:-53949379 None:intergenic
TGACAATCAAGGCAACGGAA+AGG 0.629522 1_3:-53939103 None:intergenic
CATCATGTGACACTGGTGGT+TGG 0.635922 1_3:+53947133 Msa0125460:CDS
GAGGGTATAGCTCATCCCAT+GGG 0.636469 1_3:+53949329 Msa0125460:CDS
ATCTGTAGAGGTAAGAACAG+AGG 0.637050 1_3:+53947105 Msa0125460:intron
TTCTAATGGATAGGACGAGG+AGG 0.637741 1_3:+53948184 Msa0125460:intron
TATTACTCAAATATGGCATG+TGG 0.638066 1_3:+53949520 Msa0125460:CDS
GCTACCTGAATATATGAGCA+AGG 0.638259 1_3:-53941698 None:intergenic
CGGGCGTCAGAATCAAGCGT+TGG 0.638590 1_3:+53949072 Msa0125460:CDS
TTGCAAACATCACATCCTTG+TGG 0.639230 1_3:-53938448 None:intergenic
TCAACTGCAAGATTAACTGA+AGG 0.641725 1_3:+53948488 Msa0125460:CDS
TTGAGGAACATGACTATGAG+TGG 0.642794 1_3:-53948669 None:intergenic
TCGTTTATGATATCAAGGTG+AGG 0.643699 1_3:-53949106 None:intergenic
AAGTGAATCAAAATGCCCAT+GGG 0.643942 1_3:-53949344 None:intergenic
AAAACGTGGAGTCAATGAGA+GGG 0.644020 1_3:+53943271 Msa0125460:CDS
GGACAAATAAAATAGATGGT+CGG 0.644190 1_3:+53947154 Msa0125460:CDS
TGGAAGAAGGAGCATGACTG+GGG 0.644691 1_3:+53938806 Msa0125460:CDS
TTGATATCCATAGCTGACAA+GGG 0.646234 1_3:-53949867 None:intergenic
TTGATCATCATTAAGACCAG+CGG 0.647464 1_3:-53948975 None:intergenic
TGCACAGTTTACAATAGCGG+TGG 0.648664 1_3:+53938650 Msa0125460:CDS
GTCTCACAGAATTAGGGCGT+AGG 0.653502 1_3:+53941658 Msa0125460:CDS
CATGATCATGGATTCCGAGG+AGG 0.654764 1_3:+53949310 Msa0125460:CDS
AAGAACTGGTCGAGGATCCG+CGG 0.659961 1_3:-53949258 None:intergenic
GATTACAAACCAATGGCAGG+TGG 0.661607 1_3:+53949426 Msa0125460:CDS
TGTGAGGCAGAGGTGAAGGG+GGG 0.668170 1_3:-53948428 None:intergenic
AAAGATTGGCGATGACACCA+AGG 0.670365 1_3:-53948807 None:intergenic
TGGGACACTGACGAAGACGA+CGG 0.675707 1_3:+53936250 Msa0125460:CDS
TCATGATTGACTCCTACAAG+GGG 0.681478 1_3:+53946953 Msa0125460:CDS
CCTACAGAAATGCTATCATG+GGG 0.685666 1_3:+53948693 Msa0125460:CDS
CTGGAATCGTGAAAGAGTAG+CGG 0.689827 1_3:-53935560 None:intergenic
TGACCAGGCGAGCTACTAGG+AGG 0.690611 1_3:-53948311 None:intergenic
TCGTCAGTGTCCCAATAAGG+GGG 0.692844 1_3:-53936241 None:intergenic
GGGTCCCCAAAATCGTACGA+AGG 0.696915 1_3:+53940332 Msa0125460:CDS
TCTGGAGTGGGAAATTCACG+CGG 0.697421 1_3:+53936142 Msa0125460:CDS
ACGCGGGCAGCATTCTACCG+GGG 0.700306 1_3:+53936159 Msa0125460:CDS
CTGGAGTGGGAAATTCACGC+GGG 0.702084 1_3:+53936143 Msa0125460:CDS
GGTGATCAGAAAACAAAACG+TGG 0.704649 1_3:+53943257 Msa0125460:CDS
GGGACGAACCAAGAAGACAA+TGG 0.707405 1_3:+53946613 Msa0125460:CDS
TTGGATGCAAATGATGACCG+CGG 0.707428 1_3:+53949241 Msa0125460:CDS
AGGAACATGACTATGAGTGG+CGG 0.716164 1_3:-53948666 None:intergenic
ATTATAGTTGAATCGAGACG+AGG 0.716461 1_3:+53949771 Msa0125460:three_prime_UTR
ATACAATAGATCAGGACCCG+TGG 0.724953 1_3:-53949449 None:intergenic
GGCCTGGGACCAGAAACCAA+AGG 0.729032 1_3:-53948554 None:intergenic
GACACTGACGAAGACGACGG+TGG 0.740698 1_3:+53936253 Msa0125460:CDS
TGATAGAGGATAAAGCTAGG+TGG 0.742878 1_3:+53939218 Msa0125460:CDS
GAAACTAATGCTGTCCAGTG+TGG 0.756103 1_3:+53948854 Msa0125460:CDS
ATAGCATCATGTGACACTGG+TGG 0.779232 1_3:+53947129 Msa0125460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTATAATTAATTT+TGG + chr1_3:53936036-53936055 Msa0125460:intron 0.0%
!!! TTATTTTTATAATTAATTTT+GGG + chr1_3:53936037-53936056 Msa0125460:intron 0.0%
!!! ATTTTTTTTTTTTTTTTTTT+TGG + chr1_3:53936285-53936304 Msa0125460:intron 0.0%
!!! ATTTCCATTTTTTATTTTTT+CGG + chr1_3:53935664-53935683 Msa0125460:intron 10.0%
!!! TAATTATTATCATTTCATTT+TGG + chr1_3:53935958-53935977 Msa0125460:intron 10.0%
!!! ATTTTAAGTTTTAATTTGTA+AGG + chr1_3:53936685-53936704 Msa0125460:intron 10.0%
!!! TTTTAAGTTTTAATTTGTAA+GGG + chr1_3:53936686-53936705 Msa0125460:intron 10.0%
!! AAAAAAAAAAAACATCATTT+AGG - chr1_3:53937405-53937424 None:intergenic 10.0%
!!! AAGATTTTTACAATTTTTTA+TGG - chr1_3:53937498-53937517 None:intergenic 10.0%
!! TTATATTAGTTAATTAAATC+GGG - chr1_3:53939895-53939914 None:intergenic 10.0%
!! ATATATATATATACACATAT+AGG + chr1_3:53940851-53940870 Msa0125460:intron 10.0%
!! TTTATACAAATAATGTAATT+TGG - chr1_3:53940950-53940969 None:intergenic 10.0%
!! TTTAGTAATTTGATAAAAAT+TGG + chr1_3:53941136-53941155 Msa0125460:intron 10.0%
!! TAATTTATAATTTAATCAGT+TGG + chr1_3:53941855-53941874 Msa0125460:intron 10.0%
!! TACAAAAAATTATTAAAGAA+AGG + chr1_3:53943527-53943546 Msa0125460:intron 10.0%
!! ATAAAATAAGTAATAAACTA+AGG + chr1_3:53944973-53944992 Msa0125460:intron 10.0%
!!! AAAATATAATTTTGAACTTT+TGG + chr1_3:53945097-53945116 Msa0125460:intron 10.0%
!!! TTTTACTTCAAATTATAAAA+AGG + chr1_3:53949921-53949940 Msa0125460:three_prime_UTR 10.0%
!! TTTACTTCAAATTATAAAAA+GGG + chr1_3:53949922-53949941 Msa0125460:three_prime_UTR 10.0%
!! AAAAAATGGAAATGAAAAAA+TGG - chr1_3:53935657-53935676 None:intergenic 15.0%
!! ATTACCGAAAAAATAAAAAA+TGG - chr1_3:53935671-53935690 None:intergenic 15.0%
!!! AACATTTATGAAATTTTCAT+TGG + chr1_3:53935930-53935949 Msa0125460:intron 15.0%
!!! TATAATTAATTTTGGGTTTA+AGG + chr1_3:53936044-53936063 Msa0125460:intron 15.0%
!!! ATAATTAATTTTGGGTTTAA+GGG + chr1_3:53936045-53936064 Msa0125460:intron 15.0%
!!! TTTTAAAATTCCTATCATAA+AGG + chr1_3:53937189-53937208 Msa0125460:intron 15.0%
!!! TTTAAAATTCCTATCATAAA+GGG + chr1_3:53937190-53937209 Msa0125460:intron 15.0%
!! TAGAATTAATAAATACTACA+GGG - chr1_3:53938348-53938367 None:intergenic 15.0%
!! ATAGAATTAATAAATACTAC+AGG - chr1_3:53938349-53938368 None:intergenic 15.0%
!! ATGAAAATCAAAACATAATT+TGG - chr1_3:53938386-53938405 None:intergenic 15.0%
!!! TATATTTTAATTTATCCACA+AGG + chr1_3:53938433-53938452 Msa0125460:CDS 15.0%
!! CAATTATTAATTTAAACTCA+AGG - chr1_3:53938546-53938565 None:intergenic 15.0%
!!! TTTATTTTTCCTTTTCTTTT+TGG + chr1_3:53938604-53938623 Msa0125460:intron 15.0%
!!! TTATTTTTCCTTTTCTTTTT+GGG + chr1_3:53938605-53938624 Msa0125460:intron 15.0%
!! ATAGAAAAAATTGTAATATC+CGG - chr1_3:53938737-53938756 None:intergenic 15.0%
!! GTGTGAAAAATAAAAATTTA+AGG - chr1_3:53939378-53939397 None:intergenic 15.0%
!! GTAAAACCATTATAAATAAA+AGG + chr1_3:53939667-53939686 Msa0125460:intron 15.0%
!! AAAAAATATGAAATATAAGC+AGG - chr1_3:53940714-53940733 None:intergenic 15.0%
!!! AATTTGATAAAAATTGGTTT+TGG + chr1_3:53941142-53941161 Msa0125460:intron 15.0%
!! AGTGTATAAATAAACAATTA+AGG - chr1_3:53941774-53941793 None:intergenic 15.0%
!! CTGATTAAATTATAAATTAG+TGG - chr1_3:53941854-53941873 None:intergenic 15.0%
!!! TTCTAAAATATTAAAGTACA+TGG - chr1_3:53942017-53942036 None:intergenic 15.0%
!!! CAAATTCATTTTTATAAAAC+CGG - chr1_3:53942488-53942507 None:intergenic 15.0%
!! CTTACATGTATATAATATTT+GGG + chr1_3:53942819-53942838 Msa0125460:intron 15.0%
!! TGATCTTTATATCTATATAT+TGG + chr1_3:53943096-53943115 Msa0125460:intron 15.0%
!!! TCTTTAATAATTTTTTGTAC+CGG - chr1_3:53943526-53943545 None:intergenic 15.0%
!! CCAATTAAAATTTAATGATA+TGG - chr1_3:53944285-53944304 None:intergenic 15.0%
!!! CCATATCATTAAATTTTAAT+TGG + chr1_3:53944282-53944301 Msa0125460:intron 15.0%
!!! TTAAATTTTCTTGTTCAAAA+AGG - chr1_3:53944491-53944510 None:intergenic 15.0%
!! AAACAAAAAATTTATGGATA+AGG - chr1_3:53945067-53945086 None:intergenic 15.0%
!!! TTTTTATTTTTTTTATGGTC+AGG + chr1_3:53945644-53945663 Msa0125460:intron 15.0%
!! TAAAAAAAATATATCGCTAT+GGG - chr1_3:53945891-53945910 None:intergenic 15.0%
!! TTAAAAAAAATATATCGCTA+TGG - chr1_3:53945892-53945911 None:intergenic 15.0%
!! TGTATATTTAGTATTAATCT+GGG - chr1_3:53945918-53945937 None:intergenic 15.0%
!! ATGTATATTTAGTATTAATC+TGG - chr1_3:53945919-53945938 None:intergenic 15.0%
!! AAAGTATATTATTAACTAAG+GGG - chr1_3:53945961-53945980 None:intergenic 15.0%
!!! GAAAGTATATTATTAACTAA+GGG - chr1_3:53945962-53945981 None:intergenic 15.0%
!!! AGAAAGTATATTATTAACTA+AGG - chr1_3:53945963-53945982 None:intergenic 15.0%
!! AAATACAATATCAGATATTA+GGG - chr1_3:53946321-53946340 None:intergenic 15.0%
!! TAAATACAATATCAGATATT+AGG - chr1_3:53946322-53946341 None:intergenic 15.0%
!! GGACAAAAATATTATAATTT+AGG + chr1_3:53946354-53946373 Msa0125460:intron 15.0%
!!! CTTTTTTATCTTTTAAAAAG+AGG - chr1_3:53947702-53947721 None:intergenic 15.0%
!!! CTCTTTTTAAAAGATAAAAA+AGG + chr1_3:53947700-53947719 Msa0125460:intron 15.0%
!!! TTGATTGTGTTTTTGAATTT+TGG + chr1_3:53935720-53935739 Msa0125460:intron 20.0%
!!! TGATTGTGTTTTTGAATTTT+GGG + chr1_3:53935721-53935740 Msa0125460:intron 20.0%
!!! TCATTATCTGTTTTGAATTT+AGG + chr1_3:53935842-53935861 Msa0125460:intron 20.0%
!!! CATTATCTGTTTTGAATTTA+GGG + chr1_3:53935843-53935862 Msa0125460:intron 20.0%
!!! TTGTTTATGAATTTGGTTTT+TGG + chr1_3:53935869-53935888 Msa0125460:intron 20.0%
!! TACTGAAATATTTCTTGATT+AGG + chr1_3:53936093-53936112 Msa0125460:intron 20.0%
!! ACTGAAATATTTCTTGATTA+GGG + chr1_3:53936094-53936113 Msa0125460:intron 20.0%
!! TCACTAGAAATCTTATAAAT+TGG - chr1_3:53937016-53937035 None:intergenic 20.0%
!!! AATTTATAAGATTTCTAGTG+AGG + chr1_3:53937015-53937034 Msa0125460:intron 20.0%
!! AAAGGTTCTTATAAGAAAAT+TGG - chr1_3:53937320-53937339 None:intergenic 20.0%
!! AAAAAAAAACATCATTTAGG+AGG - chr1_3:53937402-53937421 None:intergenic 20.0%
!!! TTTTAGAACTATTTATATGC+AGG + chr1_3:53937712-53937731 Msa0125460:intron 20.0%
!! AATGATATTATGAATATGGT+TGG - chr1_3:53938124-53938143 None:intergenic 20.0%
!! AACCATATTCATAATATCAT+TGG + chr1_3:53938123-53938142 Msa0125460:intron 20.0%
!! TTGACTTAAAATTTAGAAAC+TGG + chr1_3:53938159-53938178 Msa0125460:intron 20.0%
!! GAAAAATAAACCAAATACTA+TGG - chr1_3:53938594-53938613 None:intergenic 20.0%
!! ATTAAAAGTTCCAAGTTAAA+AGG - chr1_3:53939027-53939046 None:intergenic 20.0%
!!! AATGTTTGTTAAAGTAACTA+AGG + chr1_3:53940368-53940387 Msa0125460:intron 20.0%
!! AAAAAGTAATACCAAAAACT+TGG + chr1_3:53940553-53940572 Msa0125460:intron 20.0%
!! ATATTCATATTCTGAATTAG+TGG + chr1_3:53941019-53941038 Msa0125460:intron 20.0%
!! TATTCATATTCTGAATTAGT+GGG + chr1_3:53941020-53941039 Msa0125460:intron 20.0%
!! AAAGAAAAGAAAAAGAAACA+CGG - chr1_3:53941332-53941351 None:intergenic 20.0%
!! TGGTAGTTATAATAATATAC+CGG - chr1_3:53941495-53941514 None:intergenic 20.0%
!! ATATTATTATAACTACCAAC+AGG + chr1_3:53941497-53941516 Msa0125460:intron 20.0%
!! TATTATTATAACTACCAACA+GGG + chr1_3:53941498-53941517 Msa0125460:intron 20.0%
!! AATTACAAAAAACTAGTGTA+TGG - chr1_3:53941730-53941749 None:intergenic 20.0%
!!! TCAAATTGCAAGATTTTATT+TGG + chr1_3:53941974-53941993 Msa0125460:intron 20.0%
!!! GATCTTTCATTTTTTATTTG+AGG + chr1_3:53942068-53942087 Msa0125460:intron 20.0%
!! ACTCTTTATAAACTTATTTC+AGG - chr1_3:53942242-53942261 None:intergenic 20.0%
!! TGAAATAAGTTTATAAAGAG+TGG + chr1_3:53942241-53942260 Msa0125460:intron 20.0%
!! AGCTATTAGATGATTATATT+GGG - chr1_3:53942512-53942531 None:intergenic 20.0%
!! CATGAATAAGTAAATCTATT+TGG + chr1_3:53942632-53942651 Msa0125460:intron 20.0%
!! GCTTACATGTATATAATATT+TGG + chr1_3:53942818-53942837 Msa0125460:intron 20.0%
!!! ATACATTTAAAATGTATGCA+AGG - chr1_3:53942850-53942869 None:intergenic 20.0%
!! TAAATGTATAATATACTTGC+CGG + chr1_3:53942861-53942880 Msa0125460:intron 20.0%
!! ATCACAAATAAAAAAATGTG+TGG - chr1_3:53943080-53943099 None:intergenic 20.0%
!! ATATCTATATATTGGATTCA+CGG + chr1_3:53943104-53943123 Msa0125460:intron 20.0%
!!! TTATTAAAGAAAGGTGTTAT+AGG + chr1_3:53943536-53943555 Msa0125460:intron 20.0%
!! TGTGTTAAGATATATGTTAT+TGG + chr1_3:53943843-53943862 Msa0125460:intron 20.0%
!!! AATTTTACATTATTGGTTTG+AGG + chr1_3:53944180-53944199 Msa0125460:intron 20.0%
!!! TTTTAATTGGATTTAGTTCA+TGG + chr1_3:53944295-53944314 Msa0125460:intron 20.0%
!! TCAAATATAATGCAATTTCT+AGG - chr1_3:53944610-53944629 None:intergenic 20.0%
!! AATTCATTTATTAAGACATC+TGG - chr1_3:53944910-53944929 None:intergenic 20.0%
!!! ATTTTGAAAAACAATGATAG+CGG + chr1_3:53944927-53944946 Msa0125460:intron 20.0%
!!! ATTTGAGTCTTTGATATTTT+AGG - chr1_3:53945000-53945019 None:intergenic 20.0%
!! CAAGTCAAACAAAAAATTTA+TGG - chr1_3:53945073-53945092 None:intergenic 20.0%
!!! TTCACTCTTTTATATAGTAT+TGG + chr1_3:53945859-53945878 Msa0125460:intron 20.0%
!!! TCACTCTTTTATATAGTATT+GGG + chr1_3:53945860-53945879 Msa0125460:intron 20.0%
!! AAGTATATTATTAACTAAGG+GGG - chr1_3:53945960-53945979 None:intergenic 20.0%
!! TACTCAAATTTGTAGTTAAT+CGG + chr1_3:53946383-53946402 Msa0125460:intron 20.0%
!! AAAATCTTGAAAGTAACAAT+TGG - chr1_3:53946424-53946443 None:intergenic 20.0%
!!! GCTTAGTGTTATTTTTTTTT+TGG + chr1_3:53947028-53947047 Msa0125460:intron 20.0%
!!! TATTTTTTTTTTGGTGTTGA+CGG + chr1_3:53947037-53947056 Msa0125460:intron 20.0%
!! GATAAAAAAGGTCTTAAAAA+TGG + chr1_3:53947712-53947731 Msa0125460:intron 20.0%
!! AGTAATAATCTGGATAATAT+GGG - chr1_3:53949507-53949526 None:intergenic 20.0%
!!! TTTTTTTTTAGATTGGAATG+AGG + chr1_3:53949658-53949677 Msa0125460:three_prime_UTR 20.0%
!!! TTCTTCAATTTTGTTGTTCT+TGG + chr1_3:53935784-53935803 Msa0125460:intron 25.0%
!!! AGGGTTTTTGTTTATGAATT+TGG + chr1_3:53935862-53935881 Msa0125460:intron 25.0%
! ATTGCTACTGAATTGAAATT+GGG + chr1_3:53935902-53935921 Msa0125460:intron 25.0%
! AATATTTCTTGATTAGGGAA+TGG + chr1_3:53936099-53936118 Msa0125460:intron 25.0%
!!! TACATCCTGTTTTTATTACT+TGG + chr1_3:53936966-53936985 Msa0125460:intron 25.0%
! TGTATCCAAGTAATAAAAAC+AGG - chr1_3:53936974-53936993 None:intergenic 25.0%
!! TCAACTTTTATACTGTATGA+AGG + chr1_3:53937104-53937123 Msa0125460:intron 25.0%
! GCAAGTTATAAGAATAAGAT+GGG + chr1_3:53937126-53937145 Msa0125460:intron 25.0%
!! TTCTTATAAGAACCTTTTCT+AGG + chr1_3:53937323-53937342 Msa0125460:intron 25.0%
! AGTTATATGGGAAATATACA+TGG + chr1_3:53937553-53937572 Msa0125460:CDS 25.0%
!! TTAGATGATTGACTTCTAAA+CGG - chr1_3:53938046-53938065 None:intergenic 25.0%
! AAAATATCCTTCAAGATACA+GGG + chr1_3:53938090-53938109 Msa0125460:intron 25.0%
! TGCCAATGATATTATGAATA+TGG - chr1_3:53938128-53938147 None:intergenic 25.0%
! AAGACATAATGTACATATCA+GGG + chr1_3:53938299-53938318 Msa0125460:intron 25.0%
!! TTTTCATCAGAATCTTTCTT+TGG + chr1_3:53938399-53938418 Msa0125460:intron 25.0%
!!! TAAAAATCATTGGTTTTACC+TGG - chr1_3:53938520-53938539 None:intergenic 25.0%
! CTCAAGGAAATAAAAATCAT+TGG - chr1_3:53938530-53938549 None:intergenic 25.0%
!! AAAGTTTGTTCCATAGTATT+TGG + chr1_3:53938581-53938600 Msa0125460:intron 25.0%
!!! CAGAATATTTTGACTTCTTT+GGG - chr1_3:53938686-53938705 None:intergenic 25.0%
!! TTATTTAAGACTCCAAAGTT+TGG + chr1_3:53938945-53938964 Msa0125460:intron 25.0%
! CAAATGTAGAACAAATTTGT+CGG + chr1_3:53939158-53939177 Msa0125460:CDS 25.0%
!! TATTGAGTGCTATTACTAAT+CGG - chr1_3:53939404-53939423 None:intergenic 25.0%
!!! CACACACCTTTTATTTATAA+TGG - chr1_3:53939676-53939695 None:intergenic 25.0%
! TGTTTGAAGAATAACAAGAA+AGG + chr1_3:53940794-53940813 Msa0125460:intron 25.0%
! TCTAATAATAAATGACAGCA+AGG + chr1_3:53940991-53941010 Msa0125460:intron 25.0%
! ATTCATATTCTGAATTAGTG+GGG + chr1_3:53941021-53941040 Msa0125460:intron 25.0%
! TTCATCCTGTAAACTAATAT+TGG + chr1_3:53941184-53941203 Msa0125460:intron 25.0%
! TCATCCTGTAAACTAATATT+GGG + chr1_3:53941185-53941204 Msa0125460:intron 25.0%
! ACTAATATTGGGTTCAAATA+TGG + chr1_3:53941196-53941215 Msa0125460:intron 25.0%
!! TAAATATTCCCTTTTCAACA+TGG + chr1_3:53941294-53941313 Msa0125460:intron 25.0%
! AATTGAATCCATGTTGAAAA+GGG - chr1_3:53941305-53941324 None:intergenic 25.0%
! AAATTGAATCCATGTTGAAA+AGG - chr1_3:53941306-53941325 None:intergenic 25.0%
! TTTCAACATGGATTCAATTT+AGG + chr1_3:53941306-53941325 Msa0125460:intron 25.0%
! GGTAGTTATAATAATATACC+GGG - chr1_3:53941494-53941513 None:intergenic 25.0%
!!! ATTTAATCAGTTGGTTTTGT+CGG + chr1_3:53941864-53941883 Msa0125460:intron 25.0%
!! AATAACATCTGAAATCACAA+AGG - chr1_3:53941928-53941947 None:intergenic 25.0%
! CAATTTGAAAACAATGACAA+AGG - chr1_3:53941962-53941981 None:intergenic 25.0%
!!! TTTTATTTGGCTGTTTCTTT+TGG + chr1_3:53941987-53942006 Msa0125460:intron 25.0%
! AAAATGAAAGATCTTGTACT+CGG - chr1_3:53942061-53942080 None:intergenic 25.0%
! CCATATTAGGTTTGTATAAT+GGG - chr1_3:53942309-53942328 None:intergenic 25.0%
! ACCATATTAGGTTTGTATAA+TGG - chr1_3:53942310-53942329 None:intergenic 25.0%
! ACTCTTTATAAACTCATTAC+AGG - chr1_3:53942449-53942468 None:intergenic 25.0%
! CAGCTATTAGATGATTATAT+TGG - chr1_3:53942513-53942532 None:intergenic 25.0%
! ATGTAGTGAAACAAAAAGTA+TGG - chr1_3:53943052-53943071 None:intergenic 25.0%
! AATCCTAATTCCTAATTTCA+TGG + chr1_3:53943137-53943156 Msa0125460:intron 25.0%
! ATCCTAATTCCTAATTTCAT+GGG + chr1_3:53943138-53943157 Msa0125460:intron 25.0%
! AGATTGAAATTGCATCATTA+AGG + chr1_3:53943327-53943346 Msa0125460:intron 25.0%
!! ATGATTTTAGATGTCAATAG+AGG + chr1_3:53943475-53943494 Msa0125460:intron 25.0%
! AATCCATATAAGGACTAATT+TGG - chr1_3:53943953-53943972 None:intergenic 25.0%
! AAATTAGTCCTTATATGGAT+TGG + chr1_3:53943952-53943971 Msa0125460:intron 25.0%
! GTCAAAAAAGACTTATAGAT+TGG - chr1_3:53944081-53944100 None:intergenic 25.0%
!!! TCTATAAGTCTTTTTTGACA+TGG + chr1_3:53944082-53944101 Msa0125460:intron 25.0%
!!! CTAATTTTTTATGTGTACCA+TGG + chr1_3:53944120-53944139 Msa0125460:intron 25.0%
!! GAAGTGGAATTTTACATTAT+TGG + chr1_3:53944173-53944192 Msa0125460:intron 25.0%
! AAGAGACTAATGAAAACTAT+AGG + chr1_3:53944259-53944278 Msa0125460:intron 25.0%
! ATATAAGCAAAATCCAAACA+TGG - chr1_3:53944421-53944440 None:intergenic 25.0%
!! ATATAATGCAATTTCTAGGA+AGG - chr1_3:53944606-53944625 None:intergenic 25.0%
! TGTAACAAAATAGTTAAGGT+AGG + chr1_3:53944686-53944705 Msa0125460:intron 25.0%
! ACTAATTATAATATCTGCCT+AGG + chr1_3:53944785-53944804 Msa0125460:intron 25.0%
! CTTGAAAAACTTCTATGAAA+TGG - chr1_3:53944852-53944871 None:intergenic 25.0%
! GTAACAATTGGATTGAAAAA+TGG - chr1_3:53946412-53946431 None:intergenic 25.0%
!!! TTGATTTTCATTTTAGTTGC+TGG + chr1_3:53946492-53946511 Msa0125460:intron 25.0%
! AATAAGAAAGTAAAGGACAA+AGG + chr1_3:53946559-53946578 Msa0125460:CDS 25.0%
! ATAAGAAAGTAAAGGACAAA+GGG + chr1_3:53946560-53946579 Msa0125460:CDS 25.0%
! ATGGAATAATGTCTGATAAA+AGG + chr1_3:53946869-53946888 Msa0125460:CDS 25.0%
!!! ATTTTTTTTTTGGTGTTGAC+GGG + chr1_3:53947038-53947057 Msa0125460:intron 25.0%
!!! TCAGAAGTGTTATTTTGATT+TGG + chr1_3:53947074-53947093 Msa0125460:intron 25.0%
! TTTCCAATAAGAGTAGAAAT+GGG - chr1_3:53947323-53947342 None:intergenic 25.0%
! ATTTCCAATAAGAGTAGAAA+TGG - chr1_3:53947324-53947343 None:intergenic 25.0%
! GTTCAAAAAAAAAACTTCTC+CGG + chr1_3:53947356-53947375 Msa0125460:intron 25.0%
! AGAAACAGGAAAAATTGTTT+GGG - chr1_3:53947490-53947509 None:intergenic 25.0%
! AAGAAACAGGAAAAATTGTT+TGG - chr1_3:53947491-53947510 None:intergenic 25.0%
! CTAAATTGTGAAAAAGAAAC+AGG - chr1_3:53947504-53947523 None:intergenic 25.0%
!!! CTGTTTCTTTTTCACAATTT+AGG + chr1_3:53947502-53947521 Msa0125460:intron 25.0%
!!! TTTCTTTTTCACAATTTAGG+AGG + chr1_3:53947505-53947524 Msa0125460:intron 25.0%
!!! CTTTGAGCAATTTTTAAAAG+AGG + chr1_3:53947544-53947563 Msa0125460:intron 25.0%
! AAAAAAGGTCTTAAAAATGG+AGG + chr1_3:53947715-53947734 Msa0125460:intron 25.0%
! AAAAAGGTCTTAAAAATGGA+GGG + chr1_3:53947716-53947735 Msa0125460:intron 25.0%
! TGAAGATGAATAGTAAACAA+GGG - chr1_3:53947762-53947781 None:intergenic 25.0%
! TTGAAGATGAATAGTAAACA+AGG - chr1_3:53947763-53947782 None:intergenic 25.0%
!! AAACAACTCAGATTCTTTTT+GGG - chr1_3:53947936-53947955 None:intergenic 25.0%
!! TAAACAACTCAGATTCTTTT+TGG - chr1_3:53947937-53947956 None:intergenic 25.0%
!!! TGCTATTTGTGATTAGTTTA+AGG + chr1_3:53948023-53948042 Msa0125460:intron 25.0%
!!! GCTATTTGTGATTAGTTTAA+GGG + chr1_3:53948024-53948043 Msa0125460:intron 25.0%
! ATCCTATTTATGAAGCTAAA+TGG + chr1_3:53948117-53948136 Msa0125460:intron 25.0%
!! AACCATTTAGCTTCATAAAT+AGG - chr1_3:53948122-53948141 None:intergenic 25.0%
! AAAGATACAAGACTTTATAG+TGG - chr1_3:53948165-53948184 None:intergenic 25.0%
!!! AAGTCTTGTATCTTTTCTAA+TGG + chr1_3:53948170-53948189 Msa0125460:intron 25.0%
!!! TTGTATCTTTTCTAATGGAT+AGG + chr1_3:53948175-53948194 Msa0125460:intron 25.0%
! GAGTAATAATCTGGATAATA+TGG - chr1_3:53949508-53949527 None:intergenic 25.0%
! TCCAGATTATTACTCAAATA+TGG + chr1_3:53949513-53949532 Msa0125460:CDS 25.0%
! ATCAATAAGACATTTGCAAA+TGG + chr1_3:53949885-53949904 Msa0125460:three_prime_UTR 25.0%
! AAAGGGTTCAATATATTCAA+TGG + chr1_3:53949939-53949958 Msa0125460:three_prime_UTR 25.0%
!!! TCAATTTTGTTGTTCTTGGT+TGG + chr1_3:53935788-53935807 Msa0125460:intron 30.0%
CATTGCTACTGAATTGAAAT+TGG + chr1_3:53935901-53935920 Msa0125460:intron 30.0%
! TGTTTTTCTAAGTGAGGTAT+AGG + chr1_3:53936356-53936375 Msa0125460:intron 30.0%
! GTTTTTCTAAGTGAGGTATA+GGG + chr1_3:53936357-53936376 Msa0125460:intron 30.0%
! ATCAAGATTTTACGCAAGAT+CGG - chr1_3:53936911-53936930 None:intergenic 30.0%
!! TTAAGATGAGTTGATCAAAG+AGG - chr1_3:53936942-53936961 None:intergenic 30.0%
ATTTCTCAGACTGTTTATAG+TGG + chr1_3:53937053-53937072 Msa0125460:intron 30.0%
GGCAAGTTATAAGAATAAGA+TGG + chr1_3:53937125-53937144 Msa0125460:intron 30.0%
CAAAAGTTTCCCTTTATGAT+AGG - chr1_3:53937202-53937221 None:intergenic 30.0%
CTTATAAGAAAATTGGCAGA+AGG - chr1_3:53937313-53937332 None:intergenic 30.0%
ATTCTTGATCCTTTCATGAT+GGG + chr1_3:53937448-53937467 Msa0125460:intron 30.0%
TTACTTCTTATTCTCTTCGT+AGG + chr1_3:53937516-53937535 Msa0125460:intron 30.0%
AAAAACCGTCTGAGTTATAT+GGG + chr1_3:53937541-53937560 Msa0125460:CDS 30.0%
TATTTCCCATATAACTCAGA+CGG - chr1_3:53937549-53937568 None:intergenic 30.0%
AGTTTAACCAGATTACCAAA+AGG + chr1_3:53937586-53937605 Msa0125460:CDS 30.0%
GTTTAACCAGATTACCAAAA+GGG + chr1_3:53937587-53937606 Msa0125460:CDS 30.0%
CTTGAGTTTCGATAAAATGT+CGG + chr1_3:53937787-53937806 Msa0125460:intron 30.0%
TATTAATGCCCTAGTAAATC+AGG - chr1_3:53937848-53937867 None:intergenic 30.0%
CAAAATATCCTTCAAGATAC+AGG + chr1_3:53938089-53938108 Msa0125460:intron 30.0%
! TTTTGGTCAATACTTGGAAA+TGG - chr1_3:53938227-53938246 None:intergenic 30.0%
!! TTTCCAAGTATTGACCAAAA+AGG + chr1_3:53938227-53938246 Msa0125460:intron 30.0%
! CATTTCTTGTTCATCCTTTT+TGG - chr1_3:53938244-53938263 None:intergenic 30.0%
ATGTCATGATTACAAATGAC+AGG + chr1_3:53938267-53938286 Msa0125460:intron 30.0%
TGTCATGATTACAAATGACA+GGG + chr1_3:53938268-53938287 Msa0125460:intron 30.0%
CAAGACATAATGTACATATC+AGG + chr1_3:53938298-53938317 Msa0125460:intron 30.0%
CAGAATCTTTCTTTGGTTAT+TGG + chr1_3:53938406-53938425 Msa0125460:intron 30.0%
TGTATCATCCCAAAAAGAAA+AGG - chr1_3:53938616-53938635 None:intergenic 30.0%
!!! TTTTCTTTTTGGGATGATAC+AGG + chr1_3:53938615-53938634 Msa0125460:intron 30.0%
!!! CCAGAATATTTTGACTTCTT+TGG - chr1_3:53938687-53938706 None:intergenic 30.0%
CCAAAGAAGTCAAAATATTC+TGG + chr1_3:53938684-53938703 Msa0125460:CDS 30.0%
!! ATCTTGTTTGCCTTTTAACT+TGG + chr1_3:53939014-53939033 Msa0125460:intron 30.0%
!!! TGCGTGACCATTTTTTTTAT+TGG + chr1_3:53939052-53939071 Msa0125460:intron 30.0%
GCAGCAACCAATAAAAAAAA+TGG - chr1_3:53939062-53939081 None:intergenic 30.0%
TATAATGACAATCAAGGCAA+CGG - chr1_3:53939111-53939130 None:intergenic 30.0%
! ATTATAGGAGAGAACTTGTT+AGG + chr1_3:53939125-53939144 Msa0125460:CDS 30.0%
!! TTATAGGAGAGAACTTGTTA+GGG + chr1_3:53939126-53939145 Msa0125460:CDS 30.0%
AAGGAACCTTACTTTGATTA+GGG - chr1_3:53939359-53939378 None:intergenic 30.0%
TAAGGAACCTTACTTTGATT+AGG - chr1_3:53939360-53939379 None:intergenic 30.0%
! ATTGAGTGCTATTACTAATC+GGG - chr1_3:53939403-53939422 None:intergenic 30.0%
! CTAGGAAGTTTTACAATTAG+AGG - chr1_3:53939572-53939591 None:intergenic 30.0%
GGAGTAATAACAATCAATCT+AGG - chr1_3:53939590-53939609 None:intergenic 30.0%
ATAAAACTAGGCATAAACTG+GGG - chr1_3:53939786-53939805 None:intergenic 30.0%
CATAAAACTAGGCATAAACT+GGG - chr1_3:53939787-53939806 None:intergenic 30.0%
GAATGCATATGCATAAAACT+AGG - chr1_3:53939798-53939817 None:intergenic 30.0%
TTAATTAAATCGGGAAACAG+TGG - chr1_3:53939886-53939905 None:intergenic 30.0%
! ATATTTTACCGCTTCTTGAA+AGG + chr1_3:53940274-53940293 Msa0125460:CDS 30.0%
! TATTTTACCGCTTCTTGAAA+GGG + chr1_3:53940275-53940294 Msa0125460:CDS 30.0%
TATGTTGACACCTAAATAGA+CGG + chr1_3:53940396-53940415 Msa0125460:intron 30.0%
CAATACCATCACATTTCAAT+TGG - chr1_3:53940442-53940461 None:intergenic 30.0%
!!! TTTCAGAGGATGAAGTTTTT+TGG + chr1_3:53940482-53940501 Msa0125460:intron 30.0%
TAAAAGAGTAGCACAAAGTT+AGG + chr1_3:53940506-53940525 Msa0125460:intron 30.0%
! GAATACAGTATCCAAGTTTT+TGG - chr1_3:53940567-53940586 None:intergenic 30.0%
CATAAACTGAAGAGTTCTTT+AGG - chr1_3:53940669-53940688 None:intergenic 30.0%
TTCATATTCTGAATTAGTGG+GGG + chr1_3:53941022-53941041 Msa0125460:intron 30.0%
!!! ATAAAAATTGGTTTTGGCTG+TGG + chr1_3:53941148-53941167 Msa0125460:intron 30.0%
! TGAACCCAATATTAGTTTAC+AGG - chr1_3:53941192-53941211 None:intergenic 30.0%
AAGATAACATCTACGAGATA+TGG - chr1_3:53941361-53941380 None:intergenic 30.0%
ATTTGCACATATTAGGTATC+TGG + chr1_3:53941451-53941470 Msa0125460:intron 30.0%
GAATGTTATCTTCAATAACC+CGG + chr1_3:53941473-53941492 Msa0125460:intron 30.0%
TCAATATGAACCCTTTCTAT+TGG + chr1_3:53942181-53942200 Msa0125460:intron 30.0%
CAATATGAACCCTTTCTATT+GGG + chr1_3:53942182-53942201 Msa0125460:intron 30.0%
CCCATTATACAAACCTAATA+TGG + chr1_3:53942306-53942325 Msa0125460:intron 30.0%
TACAAACCTAATATGGTATC+AGG + chr1_3:53942313-53942332 Msa0125460:intron 30.0%
TGTTGCATGGATATAAATTG+TGG - chr1_3:53942356-53942375 None:intergenic 30.0%
TCTTTATTCTATGTGGAACT+GGG - chr1_3:53942421-53942440 None:intergenic 30.0%
ATCTTTATTCTATGTGGAAC+TGG - chr1_3:53942422-53942441 None:intergenic 30.0%
!! TTCATTTTTATAAAACCGGC+TGG - chr1_3:53942484-53942503 None:intergenic 30.0%
TTCATGAGGATAAATCATCA+GGG - chr1_3:53942586-53942605 None:intergenic 30.0%
TTTCATGAGGATAAATCATC+AGG - chr1_3:53942587-53942606 None:intergenic 30.0%
CATATAATGAGTCCCTAATT+TGG + chr1_3:53942711-53942730 Msa0125460:intron 30.0%
GAAACCATTCTCATAAATTC+CGG + chr1_3:53943504-53943523 Msa0125460:intron 30.0%
ATGGCTAAATTATCCGTATA+AGG + chr1_3:53943604-53943623 Msa0125460:intron 30.0%
! AAAACTAGTTTAAGAGGTGA+AGG - chr1_3:53943638-53943657 None:intergenic 30.0%
!!! TCACCTCTTAAACTAGTTTT+TGG + chr1_3:53943638-53943657 Msa0125460:intron 30.0%
! ACTCCAAAAACTAGTTTAAG+AGG - chr1_3:53943644-53943663 None:intergenic 30.0%
!!! TAAACTAGTTTTTGGAGTTG+AGG + chr1_3:53943646-53943665 Msa0125460:intron 30.0%
! ATCTGAAGCATGTACAAATT+TGG - chr1_3:53943801-53943820 None:intergenic 30.0%
! TGCTTCAGATGTCTAATTTT+AGG + chr1_3:53943811-53943830 Msa0125460:intron 30.0%
! AGGATTTTCCAATCCATATA+AGG - chr1_3:53943963-53943982 None:intergenic 30.0%
!! TTATATGGATTGGAAAATCC+TGG + chr1_3:53943962-53943981 Msa0125460:intron 30.0%
AATGATTGAGTAGATAGACT+TGG + chr1_3:53944046-53944065 Msa0125460:intron 30.0%
!!! TTGAGGAATACCTTTTTTTG+AGG + chr1_3:53944197-53944216 Msa0125460:intron 30.0%
! GCATGATTTGCCAATATTTA+TGG + chr1_3:53944537-53944556 Msa0125460:intron 30.0%
AGCAAGTCAACCATAAATAT+TGG - chr1_3:53944550-53944569 None:intergenic 30.0%
!! TTGACTTGCTTGTTTAAGAT+TGG + chr1_3:53944560-53944579 Msa0125460:intron 30.0%
GCACTGTAACAAAATAGTTA+AGG + chr1_3:53944682-53944701 Msa0125460:intron 30.0%
TAAAGTGGAACATTGAAACT+TGG + chr1_3:53944713-53944732 Msa0125460:intron 30.0%
AAAGTGGAACATTGAAACTT+GGG + chr1_3:53944714-53944733 Msa0125460:intron 30.0%
! AATATCTGCCTAGGATTTTA+TGG + chr1_3:53944794-53944813 Msa0125460:intron 30.0%
CTTCTATGAAATGGATGTTT+AGG - chr1_3:53944843-53944862 None:intergenic 30.0%
!! TCATGTGAAATTAATGGACT+TGG - chr1_3:53944884-53944903 None:intergenic 30.0%
TGGTCATCATGTGAAATTAA+TGG - chr1_3:53944890-53944909 None:intergenic 30.0%
TCAAATTACAATTCACCAAC+TGG + chr1_3:53945014-53945033 Msa0125460:intron 30.0%
! TCAGACCTTTAAGAATGTAT+TGG - chr1_3:53945132-53945151 None:intergenic 30.0%
TGGTATTTATAGCCTGTTAT+GGG - chr1_3:53945502-53945521 None:intergenic 30.0%
ACAGAAAGGAGAGAATAATT+AGG + chr1_3:53945826-53945845 Msa0125460:intron 30.0%
CAGAAAGGAGAGAATAATTA+GGG + chr1_3:53945827-53945846 Msa0125460:intron 30.0%
!! CTTTTATATAGTATTGGGCT+AGG + chr1_3:53945865-53945884 Msa0125460:intron 30.0%
ATTAGGGTTTAGTACTGTAT+TGG - chr1_3:53946305-53946324 None:intergenic 30.0%
TTGTATTTATCGCAAGTACA+CGG + chr1_3:53946333-53946352 Msa0125460:intron 30.0%
! ATTTTCCTATACATGGGAAA+AGG + chr1_3:53946458-53946477 Msa0125460:intron 30.0%
! TGAGAAAATGGATTCTAATG+AGG + chr1_3:53946642-53946661 Msa0125460:CDS 30.0%
GAAATATCTTCCATAGTATC+AGG - chr1_3:53946691-53946710 None:intergenic 30.0%
AGATACTAGTCCTGTTAATT+GGG + chr1_3:53946771-53946790 Msa0125460:CDS 30.0%
! AGACATTATTCCATTTTGTC+TGG - chr1_3:53946863-53946882 None:intergenic 30.0%
GGTTGGACAAATAAAATAGA+TGG + chr1_3:53947150-53947169 Msa0125460:CDS 30.0%
GGACAAATAAAATAGATGGT+CGG + chr1_3:53947154-53947173 Msa0125460:CDS 30.0%
CTCATTGGATGAAATTAATG+TGG - chr1_3:53947648-53947667 None:intergenic 30.0%
CAAAAGAGTGGAATCAATTA+AGG - chr1_3:53947847-53947866 None:intergenic 30.0%
AAATCTTTGTACATCTGTCT+AGG - chr1_3:53947882-53947901 None:intergenic 30.0%
! AACAACTCAGATTCTTTTTG+GGG - chr1_3:53947935-53947954 None:intergenic 30.0%
! GGCTTGAATATTAAGGTTTT+TGG + chr1_3:53948050-53948069 Msa0125460:intron 30.0%
TTGTTTACTAACATTTGACC+AGG - chr1_3:53948329-53948348 None:intergenic 30.0%
!!! GATGTTTTAGTGACATGAAA+AGG - chr1_3:53948371-53948390 None:intergenic 30.0%
GTCACTAAAACATCTTCAAA+TGG + chr1_3:53948377-53948396 Msa0125460:CDS 30.0%
TGAAAGTTCTCAAAGAGAAT+CGG + chr1_3:53948931-53948950 Msa0125460:CDS 30.0%
! ATCAAAATCATGACTTGTAC+AGG + chr1_3:53948993-53949012 Msa0125460:CDS 30.0%
! ATGGATTGATTACAAACCAA+TGG + chr1_3:53949419-53949438 Msa0125460:CDS 30.0%
GCCATATTTGAGTAATAATC+TGG - chr1_3:53949517-53949536 None:intergenic 30.0%
TATTACTCAAATATGGCATG+TGG + chr1_3:53949520-53949539 Msa0125460:CDS 30.0%
TCAATGGTTATACTGTATTC+AGG + chr1_3:53949545-53949564 Msa0125460:CDS 30.0%
! CCTCGAATACATTACATTTT+TGG - chr1_3:53949619-53949638 None:intergenic 30.0%
CCAAAAATGTAATGTATTCG+AGG + chr1_3:53949616-53949635 Msa0125460:three_prime_UTR 30.0%
TAATGTATTCGAGGAAATGT+TGG + chr1_3:53949625-53949644 Msa0125460:three_prime_UTR 30.0%
AACATGCATAAAAAAATGGC+TGG - chr1_3:53949739-53949758 None:intergenic 30.0%
!!! GCCATTTTTTTATGCATGTT+TGG + chr1_3:53949739-53949758 Msa0125460:three_prime_UTR 30.0%
GCCAAACATGCATAAAAAAA+TGG - chr1_3:53949743-53949762 None:intergenic 30.0%
AATAAGACATTTGCAAATGG+CGG + chr1_3:53949888-53949907 Msa0125460:three_prime_UTR 30.0%
AAGATGAAAGTGGATCGAAT+AGG - chr1_3:53935600-53935619 None:intergenic 35.0%
AAAAACGGTTGAAGATGAAG+AGG - chr1_3:53935626-53935645 None:intergenic 35.0%
! GTAATTTTGGATTCACGAGT+TGG + chr1_3:53935761-53935780 Msa0125460:intron 35.0%
TTGGGTTTAAGGGATGATTT+AGG + chr1_3:53936055-53936074 Msa0125460:intron 35.0%
! TGTGTGTGTTTTTCTAAGTG+AGG + chr1_3:53936350-53936369 Msa0125460:intron 35.0%
TTGTCCTGTGTGACAATATT+TGG + chr1_3:53936417-53936436 Msa0125460:intron 35.0%
!! TGAGTCGCAACATCTTATTT+TGG + chr1_3:53936473-53936492 Msa0125460:intron 35.0%
CAAAGTAAAGCTGATTATGC+AGG - chr1_3:53936505-53936524 None:intergenic 35.0%
!! TTGTACCGATTCTACGATTA+TGG + chr1_3:53936522-53936541 Msa0125460:intron 35.0%
!!! TTTTGTGCCGATTGCTATAA+AGG + chr1_3:53937155-53937174 Msa0125460:intron 35.0%
!! TTTGTGCCGATTGCTATAAA+GGG + chr1_3:53937156-53937175 Msa0125460:intron 35.0%
! AGAGTACCCTTTATAGCAAT+CGG - chr1_3:53937165-53937184 None:intergenic 35.0%
! AAATTGGCAGAAGGTACATT+TGG - chr1_3:53937304-53937323 None:intergenic 35.0%
GATTCTTGATCCTTTCATGA+TGG + chr1_3:53937447-53937466 Msa0125460:intron 35.0%
CAAAAACCGTCTGAGTTATA+TGG + chr1_3:53937540-53937559 Msa0125460:CDS 35.0%
! CGACATTTTATCGAAACTCA+AGG - chr1_3:53937789-53937808 None:intergenic 35.0%
TGAGATGTCCTGATTTACTA+GGG + chr1_3:53937837-53937856 Msa0125460:intron 35.0%
GAACAACGGAAAAAAAGGAA+AGG + chr1_3:53937938-53937957 Msa0125460:intron 35.0%
!! GGTGTTGACAAATATACAGA+AGG - chr1_3:53937997-53938016 None:intergenic 35.0%
AGCGTGCAATCTTTCTTAAA+GGG - chr1_3:53938018-53938037 None:intergenic 35.0%
AAGCGTGCAATCTTTCTTAA+AGG - chr1_3:53938019-53938038 None:intergenic 35.0%
TGTTGTCTTAGAAGCTGATA+TGG - chr1_3:53938071-53938090 None:intergenic 35.0%
!!! ACACACTGGCTTTTAAAAAC+TGG + chr1_3:53938190-53938209 Msa0125460:intron 35.0%
ACTTGGAAATGGAAGTAAAG+AGG - chr1_3:53938216-53938235 None:intergenic 35.0%
!! CATCCTTTTTGGTCAATACT+TGG - chr1_3:53938233-53938252 None:intergenic 35.0%
TCAAAACATAATTTGGCCTG+TGG - chr1_3:53938379-53938398 None:intergenic 35.0%
ATCTTTCTTTGGTTATTGGC+AGG + chr1_3:53938410-53938429 Msa0125460:intron 35.0%
CTTTGCACAGTTTACAATAG+CGG + chr1_3:53938647-53938666 Msa0125460:CDS 35.0%
CTGGTACGTTAGCTAATAAT+TGG + chr1_3:53938703-53938722 Msa0125460:intron 35.0%
CTAATAATTGGCATACGTAC+CGG + chr1_3:53938715-53938734 Msa0125460:intron 35.0%
AAAGTTTATGGAGCTGTCAA+AGG + chr1_3:53938835-53938854 Msa0125460:CDS 35.0%
GTTGCCTTGATTGTCATTAT+AGG + chr1_3:53939110-53939129 Msa0125460:CDS 35.0%
CTCTCCTATAATGACAATCA+AGG - chr1_3:53939117-53939136 None:intergenic 35.0%
!! AGTTGATAGAGGATAAAGCT+AGG + chr1_3:53939215-53939234 Msa0125460:CDS 35.0%
ATTGTCCCCTAATCAAAGTA+AGG + chr1_3:53939350-53939369 Msa0125460:intron 35.0%
AGGAACCTTACTTTGATTAG+GGG - chr1_3:53939358-53939377 None:intergenic 35.0%
! TTGAGTGCTATTACTAATCG+GGG - chr1_3:53939402-53939421 None:intergenic 35.0%
AATTCCTCTTCAATCCAGAA+AGG + chr1_3:53939456-53939475 Msa0125460:intron 35.0%
CTAGAGTATACAACTTCCTA+GGG + chr1_3:53939609-53939628 Msa0125460:intron 35.0%
TATTTAGTAAGCACTACCCT+AGG - chr1_3:53939628-53939647 None:intergenic 35.0%
TAAAACTAGGCATAAACTGG+GGG - chr1_3:53939785-53939804 None:intergenic 35.0%
GCATAAAACTAGGCATAAAC+TGG - chr1_3:53939788-53939807 None:intergenic 35.0%
TTTGCAGTTTCTTTGCTTTC+TGG + chr1_3:53940001-53940020 Msa0125460:intron 35.0%
TTGCAGTTTCTTTGCTTTCT+GGG + chr1_3:53940002-53940021 Msa0125460:intron 35.0%
GAAAGAAGTCACTTCTACTT+TGG + chr1_3:53940113-53940132 Msa0125460:CDS 35.0%
AGTCACTTCTACTTTGGTTA+TGG + chr1_3:53940119-53940138 Msa0125460:CDS 35.0%
GTTATGGATTCCTTGTATAG+TGG + chr1_3:53940135-53940154 Msa0125460:CDS 35.0%
!! TTCCTTGTATAGTGGATTGA+AGG + chr1_3:53940143-53940162 Msa0125460:CDS 35.0%
GAAAGGTTGGGTAAAATTGT+TGG + chr1_3:53940188-53940207 Msa0125460:CDS 35.0%
TGAGAAGGATATGTTTGTAC+TGG + chr1_3:53940245-53940264 Msa0125460:CDS 35.0%
!! TTTTCATCTTTTGGAGGAAG+TGG - chr1_3:53940312-53940331 None:intergenic 35.0%
ACTTCCTCCAAAAGATGAAA+AGG + chr1_3:53940311-53940330 Msa0125460:CDS 35.0%
CTTCCTCCAAAAGATGAAAA+GGG + chr1_3:53940312-53940331 Msa0125460:CDS 35.0%
! TCTTACCTTCGTACGATTTT+GGG - chr1_3:53940340-53940359 None:intergenic 35.0%
! ATCTTACCTTCGTACGATTT+TGG - chr1_3:53940341-53940360 None:intergenic 35.0%
TTGAGCCAATTGAAATGTGA+TGG + chr1_3:53940434-53940453 Msa0125460:intron 35.0%
TCAATTGCTTCTTCATCTAC+TGG + chr1_3:53940626-53940645 Msa0125460:intron 35.0%
TTTCTGATTGATCACACGTA+TGG + chr1_3:53940752-53940771 Msa0125460:intron 35.0%
! TTTTTGCTTGCCAATAGCTA+TGG + chr1_3:53940910-53940929 Msa0125460:intron 35.0%
AAGTGATGTTCCATAGCTAT+TGG - chr1_3:53940923-53940942 None:intergenic 35.0%
!! TTGCACAAGAAAGCATTTCA+TGG - chr1_3:53941081-53941100 None:intergenic 35.0%
ACTATCAAGCTATCAAGCAT+GGG - chr1_3:53941244-53941263 None:intergenic 35.0%
CCTAATATGTGCAAATCAGT+AGG - chr1_3:53941447-53941466 None:intergenic 35.0%
!! CCTACTGATTTGCACATATT+AGG + chr1_3:53941444-53941463 Msa0125460:intron 35.0%
! ATGGAATATACGACACCTTT+TGG + chr1_3:53941523-53941542 Msa0125460:intron 35.0%
!!! ACCTTTTGGCTTTATAGGTT+TGG + chr1_3:53941537-53941556 Msa0125460:intron 35.0%
TCCAAACCTATAAAGCCAAA+AGG - chr1_3:53941541-53941560 None:intergenic 35.0%
CCTACAAAACACAAGAAACA+GGG - chr1_3:53941584-53941603 None:intergenic 35.0%
TCCTACAAAACACAAGAAAC+AGG - chr1_3:53941585-53941604 None:intergenic 35.0%
! GTTTTGTAGGATGTAAACTC+TGG + chr1_3:53941594-53941613 Msa0125460:intron 35.0%
TTGTCCTTGCTCATATATTC+AGG + chr1_3:53941694-53941713 Msa0125460:CDS 35.0%
! TTTTGCAAATAAACAGCTCC+CGG - chr1_3:53941813-53941832 None:intergenic 35.0%
AATTAGTGGAGTCTACTACT+GGG - chr1_3:53941840-53941859 None:intergenic 35.0%
AAATTAGTGGAGTCTACTAC+TGG - chr1_3:53941841-53941860 None:intergenic 35.0%
!! GGTTTCTAGTTTGTAAGAGA+TGG + chr1_3:53941885-53941904 Msa0125460:intron 35.0%
! TGGGTTTTTCCCAATAGAAA+GGG - chr1_3:53942194-53942213 None:intergenic 35.0%
! TTGGGTTTTTCCCAATAGAA+AGG - chr1_3:53942195-53942214 None:intergenic 35.0%
GCTCTATATTCACTCTATGT+GGG - chr1_3:53942220-53942239 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_3:53942285-53942304 None:intergenic 35.0%
GCATGGATATAAATTGTGGA+TGG - chr1_3:53942352-53942371 None:intergenic 35.0%
GGCTCTATCTTTATTCTATG+TGG - chr1_3:53942428-53942447 None:intergenic 35.0%
! TTTTATAAAACCGGCTGGTA+AGG - chr1_3:53942479-53942498 None:intergenic 35.0%
!!! TATTGCACTGCTTTTTCATG+AGG - chr1_3:53942600-53942619 None:intergenic 35.0%
ATCATAGAAAGCAACACAGA+GGG - chr1_3:53942678-53942697 None:intergenic 35.0%
AATCATAGAAAGCAACACAG+AGG - chr1_3:53942679-53942698 None:intergenic 35.0%
CAAGTCAGGATACCAAATTA+GGG - chr1_3:53942726-53942745 None:intergenic 35.0%
TTAAAGATGTGACACACGAT+GGG - chr1_3:53942899-53942918 None:intergenic 35.0%
ATTAAAGATGTGACACACGA+TGG - chr1_3:53942900-53942919 None:intergenic 35.0%
ATCGTGTGTCACATCTTTAA+TGG + chr1_3:53942899-53942918 Msa0125460:intron 35.0%
! AACTGATGATTTGTGATGTG+TGG + chr1_3:53942982-53943001 Msa0125460:intron 35.0%
CACCCATGAAATTAGGAATT+AGG - chr1_3:53943143-53943162 None:intergenic 35.0%
CAAAATTGAGGTTGCTTATC+AGG + chr1_3:53943169-53943188 Msa0125460:CDS 35.0%
AAAGAAGGCAAAGAAAAAGC+AGG + chr1_3:53943295-53943314 Msa0125460:CDS 35.0%
TGTACCGGAATTTATGAGAA+TGG - chr1_3:53943511-53943530 None:intergenic 35.0%
TTCCCAACTGATTAGAGTTA+TGG + chr1_3:53943585-53943604 Msa0125460:intron 35.0%
AGCCATAACTCTAATCAGTT+GGG - chr1_3:53943590-53943609 None:intergenic 35.0%
TAGCCATAACTCTAATCAGT+TGG - chr1_3:53943591-53943610 None:intergenic 35.0%
AGTTAGTACCATCTTGGAAT+TGG - chr1_3:53943683-53943702 None:intergenic 35.0%
!!! TCCACCCTAGTTTTGTTTTT+GGG + chr1_3:53943702-53943721 Msa0125460:intron 35.0%
TTGGCCCAAAAACAAAACTA+GGG - chr1_3:53943709-53943728 None:intergenic 35.0%
TGAAGCATGTACAAATTTGG+TGG - chr1_3:53943798-53943817 None:intergenic 35.0%
! TGTCTAATTTTAGGCGTGAT+AGG + chr1_3:53943820-53943839 Msa0125460:intron 35.0%
TGGCCAAATTAGTCCTTATA+TGG + chr1_3:53943947-53943966 Msa0125460:intron 35.0%
TCTACTCAATCATTTGCTTG+TGG - chr1_3:53944040-53944059 None:intergenic 35.0%
! TTTTTATGTGTACCATGGCT+AGG + chr1_3:53944125-53944144 Msa0125460:intron 35.0%
ATATACAAACTTCCTAGCCA+TGG - chr1_3:53944140-53944159 None:intergenic 35.0%
! TATTTAACCTTGCTGTGAAG+TGG + chr1_3:53944157-53944176 Msa0125460:intron 35.0%
TAAAATTCCACTTCACAGCA+AGG - chr1_3:53944167-53944186 None:intergenic 35.0%
TCTAATCAGGCCTCAAAAAA+AGG - chr1_3:53944210-53944229 None:intergenic 35.0%
!!! TTTTTTGAGGCCTGATTAGA+TGG + chr1_3:53944210-53944229 Msa0125460:intron 35.0%
TAGTTCATGGCTGAACATTA+CGG + chr1_3:53944308-53944327 Msa0125460:intron 35.0%
! AAACCATAGTCTTTTCCCAT+TGG - chr1_3:53944380-53944399 None:intergenic 35.0%
GCTGTAATGAATACCATGTT+TGG + chr1_3:53944405-53944424 Msa0125460:intron 35.0%
GTTAAGGTAGGAGATTAAAG+TGG + chr1_3:53944698-53944717 Msa0125460:intron 35.0%
AAGTGGAACATTGAAACTTG+GGG + chr1_3:53944715-53944734 Msa0125460:intron 35.0%
!! CAGTTCTAAAGCTTTCTTTG+CGG - chr1_3:53944748-53944767 None:intergenic 35.0%
AGGGAATACCATAAAATCCT+AGG - chr1_3:53944805-53944824 None:intergenic 35.0%
TGGTATTCCCTTTATAACCT+TGG + chr1_3:53944814-53944833 Msa0125460:intron 35.0%
TAGGATGCCAAGGTTATAAA+GGG - chr1_3:53944824-53944843 None:intergenic 35.0%
TTAGGATGCCAAGGTTATAA+AGG - chr1_3:53944825-53944844 None:intergenic 35.0%
!! GTGAAATTAATGGACTTGGA+TGG - chr1_3:53944880-53944899 None:intergenic 35.0%
!!! GCTTGCTTTTCCTGTTTTTA+TGG + chr1_3:53945036-53945055 Msa0125460:intron 35.0%
! TAAGGCTAGTCCATAAAAAC+AGG - chr1_3:53945049-53945068 None:intergenic 35.0%
AACCGCCAATACATTCTTAA+AGG + chr1_3:53945124-53945143 Msa0125460:intron 35.0%
! GACCTTTAAGAATGTATTGG+CGG - chr1_3:53945129-53945148 None:intergenic 35.0%
! AAGCATCTGAAAGCATAAGA+TGG + chr1_3:53945203-53945222 Msa0125460:intron 35.0%
AGTCCTTAGGAATGTATTGA+CGG - chr1_3:53945297-53945316 None:intergenic 35.0%
ACATAAAAGCCCTCATTACT+TGG + chr1_3:53945453-53945472 Msa0125460:intron 35.0%
CATAAAAGCCCTCATTACTT+GGG + chr1_3:53945454-53945473 Msa0125460:intron 35.0%
ATAAAAGCCCTCATTACTTG+GGG + chr1_3:53945455-53945474 Msa0125460:intron 35.0%
GTGGTATTTATAGCCTGTTA+TGG - chr1_3:53945503-53945522 None:intergenic 35.0%
TGAAGAAGAGAATGAGAAGA+AGG + chr1_3:53945669-53945688 Msa0125460:intron 35.0%
GTTTAGATGAAGAGTTCAGA+TGG + chr1_3:53945776-53945795 Msa0125460:intron 35.0%
AGGAGAGAATAATTAGGGTT+TGG + chr1_3:53945832-53945851 Msa0125460:intron 35.0%
TTCTTGTGCTAAGCTGTTTA+TGG + chr1_3:53945979-53945998 Msa0125460:intron 35.0%
ACAGGAAAAAACTCCAAGAA+GGG - chr1_3:53946028-53946047 None:intergenic 35.0%
CGAAAGCTAAGAAATTACAC+AGG - chr1_3:53946046-53946065 None:intergenic 35.0%
! ACGTCTCATTTTCCTATACA+TGG + chr1_3:53946451-53946470 Msa0125460:intron 35.0%
! CGTCTCATTTTCCTATACAT+GGG + chr1_3:53946452-53946471 Msa0125460:intron 35.0%
!! CTTATTGTTCCGCTTTTGTT+TGG - chr1_3:53946545-53946564 None:intergenic 35.0%
GCGGAACAATAAGAAAGTAA+AGG + chr1_3:53946552-53946571 Msa0125460:CDS 35.0%
!! CAATGGTGTTGATGAGAAAA+TGG + chr1_3:53946630-53946649 Msa0125460:CDS 35.0%
AGTTACTGAAATGCTTCATC+TGG + chr1_3:53946735-53946754 Msa0125460:CDS 35.0%
GAGATACTAGTCCTGTTAAT+TGG + chr1_3:53946770-53946789 Msa0125460:CDS 35.0%
GATGTTTCATCCAGACAAAA+TGG + chr1_3:53946850-53946869 Msa0125460:CDS 35.0%
!! TTGGCTCTTTTTATCTGTAG+AGG + chr1_3:53947093-53947112 Msa0125460:intron 35.0%
ATTAACAAAGAGTCTGGAAG+TGG + chr1_3:53947207-53947226 Msa0125460:CDS 35.0%
ATTGAAGGATCGGTTAAAGT+GGG + chr1_3:53947269-53947288 Msa0125460:CDS 35.0%
TGTCCCATTTCTACTCTTAT+TGG + chr1_3:53947317-53947336 Msa0125460:intron 35.0%
AGAAATCAACAGATAAGCTC+CGG - chr1_3:53947378-53947397 None:intergenic 35.0%
! TGTGGATCCCATTTAAAGTA+GGG - chr1_3:53947630-53947649 None:intergenic 35.0%
! ATGTGGATCCCATTTAAAGT+AGG - chr1_3:53947631-53947650 None:intergenic 35.0%
TCTTTCTAACACTCTCTCAT+TGG - chr1_3:53947663-53947682 None:intergenic 35.0%
!! AATCATTGTTGATTTGTCCC+CGG - chr1_3:53947820-53947839 None:intergenic 35.0%
!! CCTTTGGAATAACAAAAGAG+TGG - chr1_3:53947859-53947878 None:intergenic 35.0%
!!! CCACTCTTTTGTTATTCCAA+AGG + chr1_3:53947856-53947875 Msa0125460:intron 35.0%
!! TTGTGATTAGTTTAAGGGAG+AGG + chr1_3:53948029-53948048 Msa0125460:intron 35.0%
!!! TTTTTGGCCTTGTTGTTGTT+AGG + chr1_3:53948066-53948085 Msa0125460:intron 35.0%
TGGATCTTTATCAGTCTGTT+GGG - chr1_3:53948405-53948424 None:intergenic 35.0%
ATGGATCTTTATCAGTCTGT+TGG - chr1_3:53948406-53948425 None:intergenic 35.0%
TCAACTGCAAGATTAACTGA+AGG + chr1_3:53948488-53948507 Msa0125460:CDS 35.0%
ATAGCATTTCTGTAGGATTG+AGG - chr1_3:53948689-53948708 None:intergenic 35.0%
ATCCTACAGAAATGCTATCA+TGG + chr1_3:53948691-53948710 Msa0125460:CDS 35.0%
TCCTACAGAAATGCTATCAT+GGG + chr1_3:53948692-53948711 Msa0125460:CDS 35.0%
AGATGGTTGAGAATAGCTAA+AGG - chr1_3:53948786-53948805 None:intergenic 35.0%
TTCCATTCTATCAGAGCTAT+GGG - chr1_3:53948837-53948856 None:intergenic 35.0%
TTTCCATTCTATCAGAGCTA+TGG - chr1_3:53948838-53948857 None:intergenic 35.0%
! ACACAGGATGTTTTACAGAA+TGG + chr1_3:53948896-53948915 Msa0125460:CDS 35.0%
TTGAGAACTTTCAATCCACT+GGG - chr1_3:53948924-53948943 None:intergenic 35.0%
TTTGAGAACTTTCAATCCAC+TGG - chr1_3:53948925-53948944 None:intergenic 35.0%
TTGATCATCATTAAGACCAG+CGG - chr1_3:53948978-53948997 None:intergenic 35.0%
CGTTTATGATATCAAGGTGA+GGG - chr1_3:53949108-53949127 None:intergenic 35.0%
TCGTTTATGATATCAAGGTG+AGG - chr1_3:53949109-53949128 None:intergenic 35.0%
!! AATTGTCGATTTAGCGATTG+CGG - chr1_3:53949205-53949224 None:intergenic 35.0%
CAAAGTTACCATCATGATCA+TGG + chr1_3:53949298-53949317 Msa0125460:CDS 35.0%
AAGTGAATCAAAATGCCCAT+GGG - chr1_3:53949347-53949366 None:intergenic 35.0%
TAAGTGAATCAAAATGCCCA+TGG - chr1_3:53949348-53949367 None:intergenic 35.0%
!!! ATGGGCATTTTGATTCACTT+AGG + chr1_3:53949347-53949366 Msa0125460:CDS 35.0%
!!! TGGGCATTTTGATTCACTTA+GGG + chr1_3:53949348-53949367 Msa0125460:CDS 35.0%
ATTGATTACAAACCAATGGC+AGG + chr1_3:53949423-53949442 Msa0125460:CDS 35.0%
ATGAGAAACACAGAGAATGA+TGG + chr1_3:53949478-53949497 Msa0125460:CDS 35.0%
AAGGCCTGCTTACAATTTAA+TGG + chr1_3:53949590-53949609 Msa0125460:three_prime_UTR 35.0%
TTATGCATGTTTGGCATTCT+AGG + chr1_3:53949748-53949767 Msa0125460:three_prime_UTR 35.0%
ATTATAGTTGAATCGAGACG+AGG + chr1_3:53949771-53949790 Msa0125460:three_prime_UTR 35.0%
TTGATATCCATAGCTGACAA+GGG - chr1_3:53949870-53949889 None:intergenic 35.0%
ATTGATATCCATAGCTGACA+AGG - chr1_3:53949871-53949890 None:intergenic 35.0%
AGAGAAAGAGAGAGAAGTGA+AGG - chr1_3:53935501-53935520 None:intergenic 40.0%
AAGAGTAGCGGTTGTGAAAA+GGG - chr1_3:53935551-53935570 None:intergenic 40.0%
AAAGAGTAGCGGTTGTGAAA+AGG - chr1_3:53935552-53935571 None:intergenic 40.0%
ATAGGAGAAGAAGATGAACC+TGG - chr1_3:53935582-53935601 None:intergenic 40.0%
GAAGAGGAAGAAGATGAAAG+TGG - chr1_3:53935610-53935629 None:intergenic 40.0%
AAAATGGCGCAGGAGAAAAA+CGG - chr1_3:53935641-53935660 None:intergenic 40.0%
TGGAAATGAAAAAATGGCGC+AGG - chr1_3:53935651-53935670 None:intergenic 40.0%
GATGAGTACAGGAAGATCAT+TGG - chr1_3:53935699-53935718 None:intergenic 40.0%
ACACAATCAACGATGAGTAC+AGG - chr1_3:53935710-53935729 None:intergenic 40.0%
TTTCTTGATTAGGGAATGGC+TGG + chr1_3:53936103-53936122 Msa0125460:intron 40.0%
TTCTAAGTGAGGTATAGGGA+TGG + chr1_3:53936361-53936380 Msa0125460:intron 40.0%
AGGTATAGGGATGGTAATTG+TGG + chr1_3:53936370-53936389 Msa0125460:intron 40.0%
ATCGCCAAATATTGTCACAC+AGG - chr1_3:53936424-53936443 None:intergenic 40.0%
!!! GTCGCAACATCTTATTTTGG+TGG + chr1_3:53936476-53936495 Msa0125460:intron 40.0%
CGAGACCATAATCGTAGAAT+CGG - chr1_3:53936530-53936549 None:intergenic 40.0%
CGATTCTACGATTATGGTCT+CGG + chr1_3:53936528-53936547 Msa0125460:intron 40.0%
! GATTTTACGCAAGATCGGAA+AGG - chr1_3:53936906-53936925 None:intergenic 40.0%
GACTGTTTATAGTGGCAGAA+TGG + chr1_3:53937061-53937080 Msa0125460:intron 40.0%
!! GATTGCTATAAAGGGTACTC+TGG + chr1_3:53937164-53937183 Msa0125460:intron 40.0%
TGACGTGACTAAGATGATGT+GGG - chr1_3:53937252-53937271 None:intergenic 40.0%
!! GAAGTTCCCTTTTGGTAATC+TGG - chr1_3:53937596-53937615 None:intergenic 40.0%
! ATTACTGCGAAGTTCCCTTT+TGG - chr1_3:53937604-53937623 None:intergenic 40.0%
ACTTCGCAGTAATGCATTTG+AGG + chr1_3:53937611-53937630 Msa0125460:CDS 40.0%
! AGTAATGCATTTGAGGTTGG+AGG + chr1_3:53937618-53937637 Msa0125460:CDS 40.0%
AACTGCTGTCATGAATGACT+CGG - chr1_3:53937763-53937782 None:intergenic 40.0%
CTGAGATGTCCTGATTTACT+AGG + chr1_3:53937836-53937855 Msa0125460:intron 40.0%
! AGAAAGCACGATGAATTTCG+AGG + chr1_3:53937898-53937917 Msa0125460:intron 40.0%
!!! CTTTTTTTCCGTTGTTCCCA+TGG - chr1_3:53937935-53937954 None:intergenic 40.0%
CATGGGAACAACGGAAAAAA+AGG + chr1_3:53937933-53937952 Msa0125460:intron 40.0%
GCATAAACCCTGTATCTTGA+AGG - chr1_3:53938100-53938119 None:intergenic 40.0%
TAAAAGCCAGTGTGTGATAC+AGG - chr1_3:53938185-53938204 None:intergenic 40.0%
TAATTCTATCAACGCACCAC+AGG + chr1_3:53938360-53938379 Msa0125460:intron 40.0%
TTGCAAACATCACATCCTTG+TGG - chr1_3:53938451-53938470 None:intergenic 40.0%
AACCATGACAAACTTCTTCC+AGG + chr1_3:53938499-53938518 Msa0125460:CDS 40.0%
TACCTGGAAGAAGTTTGTCA+TGG - chr1_3:53938504-53938523 None:intergenic 40.0%
!!! CTTTTTGGGATGATACAGGA+TGG + chr1_3:53938619-53938638 Msa0125460:intron 40.0%
!!! CAGATACATTGCACCGATTT+TGG + chr1_3:53938786-53938805 Msa0125460:intron 40.0%
!!! ATTGCACCGATTTTGGAAGA+AGG + chr1_3:53938793-53938812 Msa0125460:CDS 40.0%
CATGCTCCTTCTTCCAAAAT+CGG - chr1_3:53938802-53938821 None:intergenic 40.0%
CTGGGGATGGAAAAAGTTTA+TGG + chr1_3:53938823-53938842 Msa0125460:CDS 40.0%
GAGCTGTCAAAGGTTAATGA+CGG + chr1_3:53938845-53938864 Msa0125460:CDS 40.0%
AAGCTCAAGTTCAAGTCATC+AGG + chr1_3:53938900-53938919 Msa0125460:CDS 40.0%
AATGGATGCATGCCAAACTT+TGG - chr1_3:53938960-53938979 None:intergenic 40.0%
CTGATCAGACAGCTATACAA+TGG - chr1_3:53938978-53938997 None:intergenic 40.0%
TGTATAGCTGTCTGATCAGA+TGG + chr1_3:53938979-53938998 Msa0125460:intron 40.0%
GTATAGCTGTCTGATCAGAT+GGG + chr1_3:53938980-53938999 Msa0125460:intron 40.0%
!! TTTTTATTGGTTGCTGCTGC+AGG + chr1_3:53939065-53939084 Msa0125460:intron 40.0%
!! TTTTATTGGTTGCTGCTGCA+GGG + chr1_3:53939066-53939085 Msa0125460:intron 40.0%
! ACAAATTTGTCGGCGTTTTG+TGG + chr1_3:53939168-53939187 Msa0125460:CDS 40.0%
TGATAGAGGATAAAGCTAGG+TGG + chr1_3:53939218-53939237 Msa0125460:CDS 40.0%
TGCTCTCCTTTGATAAAGCT+AGG + chr1_3:53939254-53939273 Msa0125460:intron 40.0%
!! GAGACACCTAGCTTTATCAA+AGG - chr1_3:53939263-53939282 None:intergenic 40.0%
CCTAGGAAGTTGTATACTCT+AGG - chr1_3:53939611-53939630 None:intergenic 40.0%
CCTAGAGTATACAACTTCCT+AGG + chr1_3:53939608-53939627 Msa0125460:intron 40.0%
ATCAGACACCCACAACTTAA+AGG - chr1_3:53939949-53939968 None:intergenic 40.0%
TGCAGTTTCTTTGCTTTCTG+GGG + chr1_3:53940003-53940022 Msa0125460:intron 40.0%
! GGGAAGTTGATCAAACATCT+AGG + chr1_3:53940025-53940044 Msa0125460:CDS 40.0%
AGCCTTCAATCCACTATACA+AGG - chr1_3:53940148-53940167 None:intergenic 40.0%
ACCTATTGTTCGTGTTGAGA+AGG + chr1_3:53940230-53940249 Msa0125460:CDS 40.0%
TCCTTCTCAACACGAACAAT+AGG - chr1_3:53940234-53940253 None:intergenic 40.0%
GAAGGATATGTTTGTACTGG+TGG + chr1_3:53940248-53940267 Msa0125460:CDS 40.0%
! CTTACCTTCGTACGATTTTG+GGG - chr1_3:53940339-53940358 None:intergenic 40.0%
AACCATATCGCCGTCTATTT+AGG - chr1_3:53940409-53940428 None:intergenic 40.0%
!! TGATGGTATTGATACCACTG+TGG + chr1_3:53940451-53940470 Msa0125460:intron 40.0%
CTGAAAATTTCCTTCCACAG+TGG - chr1_3:53940468-53940487 None:intergenic 40.0%
! CTGTGGAAGGAAATTTTCAG+AGG + chr1_3:53940468-53940487 Msa0125460:intron 40.0%
TGAATTAGTGGGGGAATTTG+TGG + chr1_3:53941031-53941050 Msa0125460:intron 40.0%
GAATTAGTGGGGGAATTTGT+GGG + chr1_3:53941032-53941051 Msa0125460:intron 40.0%
!!! AAATTGGTTTTGGCTGTGGA+AGG + chr1_3:53941152-53941171 Msa0125460:intron 40.0%
CACTATCAAGCTATCAAGCA+TGG - chr1_3:53941245-53941264 None:intergenic 40.0%
TATAACTACCAACAGGGCTA+TGG + chr1_3:53941504-53941523 Msa0125460:intron 40.0%
!!! ACGACACCTTTTGGCTTTAT+AGG + chr1_3:53941532-53941551 Msa0125460:intron 40.0%
CAGGGTTCTTAGCAATCAAA+AGG - chr1_3:53941566-53941585 None:intergenic 40.0%
!! CCCTGTTTCTTGTGTTTTGT+AGG + chr1_3:53941581-53941600 Msa0125460:intron 40.0%
ATTCTATTGAGCGCGATGAA+AGG + chr1_3:53941634-53941653 Msa0125460:CDS 40.0%
!! AAAGGCGTCTCACAGAATTA+GGG + chr1_3:53941652-53941671 Msa0125460:CDS 40.0%
GCTACCTGAATATATGAGCA+AGG - chr1_3:53941701-53941720 None:intergenic 40.0%
! ACTCCTGAATTTTGTCTGTC+CGG + chr1_3:53941791-53941810 Msa0125460:intron 40.0%
ATTCACTCTATGTGGGACTT+GGG - chr1_3:53942213-53942232 None:intergenic 40.0%
TATTCACTCTATGTGGGACT+TGG - chr1_3:53942214-53942233 None:intergenic 40.0%
GGCTCTATATTCACTCTATG+TGG - chr1_3:53942221-53942240 None:intergenic 40.0%
GATAGGCCTGATACCATATT+AGG - chr1_3:53942322-53942341 None:intergenic 40.0%
CTAATATGTCCAGTCCTGTT+GGG - chr1_3:53942381-53942400 None:intergenic 40.0%
TCTAATATGTCCAGTCCTGT+TGG - chr1_3:53942382-53942401 None:intergenic 40.0%
AACAGGACTGGACATATTAG+AGG + chr1_3:53942381-53942400 Msa0125460:intron 40.0%
! TTGATGCCAGTTGTTTCAGA+TGG + chr1_3:53942537-53942556 Msa0125460:intron 40.0%
! ACAACACCATCTGAAACAAC+TGG - chr1_3:53942546-53942565 None:intergenic 40.0%
CCAAGTCAGGATACCAAATT+AGG - chr1_3:53942727-53942746 None:intergenic 40.0%
CCTAATTTGGTATCCTGACT+TGG + chr1_3:53942724-53942743 Msa0125460:intron 40.0%
! GATCCTTGTTTGTCAAGACT+AGG + chr1_3:53942774-53942793 Msa0125460:intron 40.0%
!! ACACCTAGTCTTGACAAACA+AGG - chr1_3:53942780-53942799 None:intergenic 40.0%
TAAAGATGTGACACACGATG+GGG - chr1_3:53942898-53942917 None:intergenic 40.0%
GGTGATCAGAAAACAAAACG+TGG + chr1_3:53943257-53943276 Msa0125460:CDS 40.0%
AAAACGTGGAGTCAATGAGA+GGG + chr1_3:53943271-53943290 Msa0125460:CDS 40.0%
AGTCAATGAGAGGGAAAAGA+AGG + chr1_3:53943280-53943299 Msa0125460:CDS 40.0%
!! TTTAAGAGGTGAAGGTGTTC+TGG - chr1_3:53943630-53943649 None:intergenic 40.0%
ACCTAAGTCCAATTCCAAGA+TGG + chr1_3:53943672-53943691 Msa0125460:intron 40.0%
ACCATCTTGGAATTGGACTT+AGG - chr1_3:53943676-53943695 None:intergenic 40.0%
!!! CTCCACCCTAGTTTTGTTTT+TGG + chr1_3:53943701-53943720 Msa0125460:intron 40.0%
CTTGGCCCAAAAACAAAACT+AGG - chr1_3:53943710-53943729 None:intergenic 40.0%
!!! CTAGTTTTGTTTTTGGGCCA+AGG + chr1_3:53943708-53943727 Msa0125460:intron 40.0%
TCTTAGCACAACTTACACTC+AGG - chr1_3:53943761-53943780 None:intergenic 40.0%
! AACACAGGATATCTGAAGCA+TGG - chr1_3:53943884-53943903 None:intergenic 40.0%
!! TATCCTGTGTTGATTGTGAG+AGG + chr1_3:53943893-53943912 Msa0125460:intron 40.0%
TGCCATGTCAACTAGAGATA+TGG + chr1_3:53943927-53943946 Msa0125460:intron 40.0%
GCTTGTGGTCTTCAGAATTT+CGG - chr1_3:53944025-53944044 None:intergenic 40.0%
AGACTATCCTCCATCTAATC+AGG - chr1_3:53944223-53944242 None:intergenic 40.0%
!! TTACGGTGTCACTTGATCTT+TGG + chr1_3:53944325-53944344 Msa0125460:intron 40.0%
GAATCGGTTACATAGGTCAA+GGG - chr1_3:53944354-53944373 None:intergenic 40.0%
TTGGATGGAATCGGTTACAT+AGG - chr1_3:53944361-53944380 None:intergenic 40.0%
! ATGTAACCGATTCCATCCAA+TGG + chr1_3:53944361-53944380 Msa0125460:intron 40.0%
! TGTAACCGATTCCATCCAAT+GGG + chr1_3:53944362-53944381 Msa0125460:intron 40.0%
! CTTTTCCCATTGGATGGAAT+CGG - chr1_3:53944370-53944389 None:intergenic 40.0%
! CATAGTCTTTTCCCATTGGA+TGG - chr1_3:53944376-53944395 None:intergenic 40.0%
CATCCAATGGGAAAAGACTA+TGG + chr1_3:53944374-53944393 Msa0125460:intron 40.0%
! AATTTCTAGGAAGGCAAGGA+TGG - chr1_3:53944597-53944616 None:intergenic 40.0%
! ATGCAATTTCTAGGAAGGCA+AGG - chr1_3:53944601-53944620 None:intergenic 40.0%
! AATGGATGTTTAGGATGCCA+AGG - chr1_3:53944834-53944853 None:intergenic 40.0%
TGCTTTCAGATGCTTGCAAA+GGG - chr1_3:53945198-53945217 None:intergenic 40.0%
ATGCTTTCAGATGCTTGCAA+AGG - chr1_3:53945199-53945218 None:intergenic 40.0%
GAACCGTCAATACATTCCTA+AGG + chr1_3:53945291-53945310 Msa0125460:intron 40.0%
!! TTCTAGAAGTCTCTAGAGCT+CGG + chr1_3:53945423-53945442 Msa0125460:intron 40.0%
ACTTAAGCCCCAAGTAATGA+GGG - chr1_3:53945465-53945484 None:intergenic 40.0%
TTTATAGCCTGTTATGGGCT+TGG - chr1_3:53945497-53945516 None:intergenic 40.0%
GAAGAAGGAAGAAGAAGTGA+AGG + chr1_3:53945684-53945703 Msa0125460:intron 40.0%
GAATGAGAACGATTGAAGAG+AGG + chr1_3:53945721-53945740 Msa0125460:intron 40.0%
ATGAAGAGTTCAGATGGATG+TGG + chr1_3:53945782-53945801 Msa0125460:intron 40.0%
TGTGTTTGAGGAGAACAGAA+AGG + chr1_3:53945812-53945831 Msa0125460:intron 40.0%
CACAGGAAAAAACTCCAAGA+AGG - chr1_3:53946029-53946048 None:intergenic 40.0%
! TTACAATTTTGCCCTCGAGT+GGG + chr1_3:53946178-53946197 Msa0125460:intron 40.0%
TAAGATCGAGGAACGTAACA+CGG - chr1_3:53946214-53946233 None:intergenic 40.0%
TCCTGACTACATTGTTCTCA+AGG + chr1_3:53946274-53946293 Msa0125460:intron 40.0%
! ACTCTCCTTTTCCCATGTAT+AGG - chr1_3:53946466-53946485 None:intergenic 40.0%
! TGTTCCTTTCTTTTCACTGC+AGG + chr1_3:53946519-53946538 Msa0125460:intron 40.0%
AGAAAGTAAAGGACAAAGGG+AGG + chr1_3:53946563-53946582 Msa0125460:CDS 40.0%
GAAAGTAAAGGACAAAGGGA+GGG + chr1_3:53946564-53946583 Msa0125460:CDS 40.0%
CATCAACACCATTGTCTTCT+TGG - chr1_3:53946624-53946643 None:intergenic 40.0%
GTCTGAAAAGCCTGATACTA+TGG + chr1_3:53946678-53946697 Msa0125460:CDS 40.0%
GCATCAGTATCCCAATTAAC+AGG - chr1_3:53946784-53946803 None:intergenic 40.0%
GACTACTGATGGCAAAGAAT+CGG - chr1_3:53946935-53946954 None:intergenic 40.0%
GAGTCAATCATGACTACTGA+TGG - chr1_3:53946946-53946965 None:intergenic 40.0%
! AGTCATGATTGACTCCTACA+AGG + chr1_3:53946951-53946970 Msa0125460:CDS 40.0%
! GTCATGATTGACTCCTACAA+GGG + chr1_3:53946952-53946971 Msa0125460:CDS 40.0%
! TCATGATTGACTCCTACAAG+GGG + chr1_3:53946953-53946972 Msa0125460:CDS 40.0%
TGAAAAAGAGTTCCCCTTGT+AGG - chr1_3:53946968-53946987 None:intergenic 40.0%
AAGCTAAATACTTGCCTGCT+AGG - chr1_3:53947012-53947031 None:intergenic 40.0%
ATCTGTAGAGGTAAGAACAG+AGG + chr1_3:53947105-53947124 Msa0125460:intron 40.0%
GGGGTTATTAACAAAGAGTC+TGG + chr1_3:53947201-53947220 Msa0125460:CDS 40.0%
CTGTTGTCACATTGAAGGAT+CGG + chr1_3:53947259-53947278 Msa0125460:CDS 40.0%
CATTGAAGGATCGGTTAAAG+TGG + chr1_3:53947268-53947287 Msa0125460:CDS 40.0%
! TGAGAAGCATGTTGTCAGAA+AGG + chr1_3:53947293-53947312 Msa0125460:CDS 40.0%
!! TCTAGCTCTCTAAGATGAGA+AGG - chr1_3:53947465-53947484 None:intergenic 40.0%
TCTAACACTCACTCTCTCAT+TGG + chr1_3:53947585-53947604 Msa0125460:intron 40.0%
CTAACACTCACTCTCTCATT+GGG + chr1_3:53947586-53947605 Msa0125460:intron 40.0%
CTCATTGGGTGAAATCAATG+TGG + chr1_3:53947600-53947619 Msa0125460:intron 40.0%
TGGATCCCCCTACTTTAAAT+GGG + chr1_3:53947620-53947639 Msa0125460:intron 40.0%
! TGGATCCCATTTAAAGTAGG+GGG - chr1_3:53947628-53947647 None:intergenic 40.0%
! GTGGATCCCATTTAAAGTAG+GGG - chr1_3:53947629-53947648 None:intergenic 40.0%
AGGTCTTAAAAATGGAGGGA+TGG + chr1_3:53947720-53947739 Msa0125460:intron 40.0%
GGTGTCTATAATGTGAGACA+TGG - chr1_3:53947905-53947924 None:intergenic 40.0%
!! AACTCAGATTCTTTTTGGGG+TGG - chr1_3:53947932-53947951 None:intergenic 40.0%
AGGGAGAGGCTTGAATATTA+AGG + chr1_3:53948043-53948062 Msa0125460:intron 40.0%
!! CTTTTCTAATGGATAGGACG+AGG + chr1_3:53948181-53948200 Msa0125460:intron 40.0%
CCAACTTCGTCTTTGATGTT+GGG - chr1_3:53948230-53948249 None:intergenic 40.0%
CCAACATCAAAGACGAAGTT+GGG + chr1_3:53948228-53948247 Msa0125460:CDS 40.0%
! AGTCTTCTGGATCTCAGTTT+TGG - chr1_3:53948468-53948487 None:intergenic 40.0%
ATCTTGCAGTTGAAGTCTTC+TGG - chr1_3:53948481-53948500 None:intergenic 40.0%
CTTGAAGGTCTTGAGATAGT+AGG - chr1_3:53948530-53948549 None:intergenic 40.0%
AAGACCTTCAAGTACTCCTT+TGG + chr1_3:53948538-53948557 Msa0125460:CDS 40.0%
!! GAAACCAAAGGAGTACTTGA+AGG - chr1_3:53948545-53948564 None:intergenic 40.0%
! TCAAGTACTCCTTTGGTTTC+TGG + chr1_3:53948545-53948564 Msa0125460:CDS 40.0%
TTGAGGAACATGACTATGAG+TGG - chr1_3:53948672-53948691 None:intergenic 40.0%
CCTACAGAAATGCTATCATG+GGG + chr1_3:53948693-53948712 Msa0125460:CDS 40.0%
GTTGAGAATAGCTAAAGGAC+GGG - chr1_3:53948781-53948800 None:intergenic 40.0%
GGTTGAGAATAGCTAAAGGA+CGG - chr1_3:53948782-53948801 None:intergenic 40.0%
CTATTCTCAACCATCTACCT+TGG + chr1_3:53948790-53948809 Msa0125460:CDS 40.0%
GAGCTATGGGATAGAAAGAT+TGG - chr1_3:53948824-53948843 None:intergenic 40.0%
!! ATCCCATAGCTCTGATAGAA+TGG + chr1_3:53948832-53948851 Msa0125460:CDS 40.0%
! TTTTACAGAATGGTTCCCAG+TGG + chr1_3:53948906-53948925 Msa0125460:CDS 40.0%
TGATCATCATTAAGACCAGC+GGG - chr1_3:53948977-53948996 None:intergenic 40.0%
CCACTACACAGTAGATCTAT+GGG + chr1_3:53949016-53949035 Msa0125460:CDS 40.0%
GCAGGTCGTTTATGATATCA+AGG - chr1_3:53949114-53949133 None:intergenic 40.0%
!! CTTGATGATGAGCATACTGT+TGG + chr1_3:53949133-53949152 Msa0125460:CDS 40.0%
TGAGCATACTGTTGGAAAGA+CGG + chr1_3:53949141-53949160 Msa0125460:CDS 40.0%
GATTCGAGTGTCTGAGAAAT+GGG + chr1_3:53949179-53949198 Msa0125460:CDS 40.0%
AATCGACAATTCAGCTTTCC+TGG + chr1_3:53949214-53949233 Msa0125460:CDS 40.0%
TAAGGCATGCTAGTAACTTG+CGG - chr1_3:53949382-53949401 None:intergenic 40.0%
ACTAGCATGCCTTATGTCAA+TGG + chr1_3:53949388-53949407 Msa0125460:CDS 40.0%
TCAACCTGTCCATTGACATA+AGG - chr1_3:53949400-53949419 None:intergenic 40.0%
! TATGTCAATGGACAGGTTGA+TGG + chr1_3:53949400-53949419 Msa0125460:CDS 40.0%
ATGCCTGCATACAATAGATC+AGG - chr1_3:53949460-53949479 None:intergenic 40.0%
! AATATGGCATGTGGTGTCAA+TGG + chr1_3:53949529-53949548 Msa0125460:CDS 40.0%
! TCCCTCTAAGAACCATTTGA+GGG - chr1_3:53949571-53949590 None:intergenic 40.0%
! TTCCCTCTAAGAACCATTTG+AGG - chr1_3:53949572-53949591 None:intergenic 40.0%
TCAAATGGTTCTTAGAGGGA+AGG + chr1_3:53949571-53949590 Msa0125460:exon 40.0%
GCGACCATTAAATTGTAAGC+AGG - chr1_3:53949597-53949616 None:intergenic 40.0%
! TACCATGCATCCTCTCTTTT+CGG + chr1_3:53949820-53949839 Msa0125460:three_prime_UTR 40.0%
CAAATTGCATCCGAAAAGAG+AGG - chr1_3:53949833-53949852 None:intergenic 40.0%
TTCGGATGCAATTTGTACCA+AGG + chr1_3:53949838-53949857 Msa0125460:three_prime_UTR 40.0%
CTGGAATCGTGAAAGAGTAG+CGG - chr1_3:53935563-53935582 None:intergenic 45.0%
GTCTACTTCTCCCCCTTATT+GGG + chr1_3:53936231-53936250 Msa0125460:CDS 45.0%
TTCGTCAGTGTCCCAATAAG+GGG - chr1_3:53936245-53936264 None:intergenic 45.0%
CTTCGTCAGTGTCCCAATAA+GGG - chr1_3:53936246-53936265 None:intergenic 45.0%
TCTTCGTCAGTGTCCCAATA+AGG - chr1_3:53936247-53936266 None:intergenic 45.0%
TTGCGACTCATAATCGCTGA+GGG - chr1_3:53936463-53936482 None:intergenic 45.0%
TACGATTATGGTCTCGGTTG+TGG + chr1_3:53936534-53936553 Msa0125460:intron 45.0%
GTGACGTGACTAAGATGATG+TGG - chr1_3:53937253-53937272 None:intergenic 45.0%
TCTTAGTCACGTCACTCACT+TGG + chr1_3:53937258-53937277 Msa0125460:intron 45.0%
! AACCTTTTCTAGGCCAGAGT+GGG + chr1_3:53937333-53937352 Msa0125460:intron 45.0%
! CGCAGTAATGCATTTGAGGT+TGG + chr1_3:53937615-53937634 Msa0125460:CDS 45.0%
TTGAGGTTGGAGGCTACAAA+TGG + chr1_3:53937628-53937647 Msa0125460:CDS 45.0%
TGGAGGCTACAAATGGTATG+AGG + chr1_3:53937635-53937654 Msa0125460:intron 45.0%
GGAGGCTACAAATGGTATGA+GGG + chr1_3:53937636-53937655 Msa0125460:intron 45.0%
ACTGCTGTCATGAATGACTC+GGG - chr1_3:53937762-53937781 None:intergenic 45.0%
TCGAGGATTGAGATCTTCCA+TGG + chr1_3:53937915-53937934 Msa0125460:intron 45.0%
CGAGGATTGAGATCTTCCAT+GGG + chr1_3:53937916-53937935 Msa0125460:intron 45.0%
GAGATCTTCCATGGGAACAA+CGG + chr1_3:53937924-53937943 Msa0125460:intron 45.0%
TGCACAGTTTACAATAGCGG+TGG + chr1_3:53938650-53938669 Msa0125460:CDS 45.0%
! TTTGGAAGAAGGAGCATGAC+TGG + chr1_3:53938804-53938823 Msa0125460:CDS 45.0%
! TTGGAAGAAGGAGCATGACT+GGG + chr1_3:53938805-53938824 Msa0125460:CDS 45.0%
TGACAATCAAGGCAACGGAA+AGG - chr1_3:53939106-53939125 None:intergenic 45.0%
! AATTTGTCGGCGTTTTGTGG+AGG + chr1_3:53939171-53939190 Msa0125460:CDS 45.0%
AGGAAAGACGAAGCAAGCTT+GGG + chr1_3:53939191-53939210 Msa0125460:CDS 45.0%
!! CAAGCTTGGGAAGTTGATAG+AGG + chr1_3:53939204-53939223 Msa0125460:CDS 45.0%
AGGATAAAGCTAGGTGGTCA+AGG + chr1_3:53939224-53939243 Msa0125460:CDS 45.0%
TTCGCCTTTCTGGATTGAAG+AGG - chr1_3:53939463-53939482 None:intergenic 45.0%
TCCAGAAAGGCGAAAACGTT+TGG + chr1_3:53939469-53939488 Msa0125460:intron 45.0%
CCAGAAAGGCGAAAACGTTT+GGG + chr1_3:53939470-53939489 Msa0125460:intron 45.0%
CGAAAACGTTTGGGCAATCT+GGG + chr1_3:53939479-53939498 Msa0125460:intron 45.0%
ACACCCACAACTTAAAGGTC+TGG - chr1_3:53939944-53939963 None:intergenic 45.0%
GCAGTTTCTTTGCTTTCTGG+GGG + chr1_3:53940004-53940023 Msa0125460:intron 45.0%
CAGTTTCTTTGCTTTCTGGG+GGG + chr1_3:53940005-53940024 Msa0125460:intron 45.0%
CTGTCTTCTCCCTAGACATA+CGG - chr1_3:53940053-53940072 None:intergenic 45.0%
!! TAGTGGATTGAAGGCTCTTG+AGG + chr1_3:53940152-53940171 Msa0125460:CDS 45.0%
!! AGTGGATTGAAGGCTCTTGA+GGG + chr1_3:53940153-53940172 Msa0125460:CDS 45.0%
CCAGACTAGCAAGAAAGGTT+GGG + chr1_3:53940176-53940195 Msa0125460:CDS 45.0%
TCAACACGAACAATAGGTGC+TGG - chr1_3:53940228-53940247 None:intergenic 45.0%
ATAGCAGCCCTTTCAAGAAG+CGG - chr1_3:53940285-53940304 None:intergenic 45.0%
! GGACCCTTTTCATCTTTTGG+AGG - chr1_3:53940318-53940337 None:intergenic 45.0%
! TGGGGACCCTTTTCATCTTT+TGG - chr1_3:53940321-53940340 None:intergenic 45.0%
CACCTAAATAGACGGCGATA+TGG + chr1_3:53940404-53940423 Msa0125460:intron 45.0%
!! GGTATTGATACCACTGTGGA+AGG + chr1_3:53940455-53940474 Msa0125460:intron 45.0%
CGTATATTCCATAGCCCTGT+TGG - chr1_3:53941515-53941534 None:intergenic 45.0%
GTAGGATGTAAACTCTGGTG+AGG + chr1_3:53941599-53941618 Msa0125460:intron 45.0%
!! GAAAGGCGTCTCACAGAATT+AGG + chr1_3:53941651-53941670 Msa0125460:CDS 45.0%
AGAATTAGGGCGTAGGACTT+TGG + chr1_3:53941665-53941684 Msa0125460:CDS 45.0%
! CTCCTGAATTTTGTCTGTCC+GGG + chr1_3:53941792-53941811 Msa0125460:intron 45.0%
!! AAAACCGGCTTGTAAGGTGA+GGG - chr1_3:53942270-53942289 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr1_3:53942276-53942295 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr1_3:53942273-53942292 Msa0125460:intron 45.0%
ATGGTATCAGGCCTATCGAT+TGG + chr1_3:53942325-53942344 Msa0125460:intron 45.0%
! TGGTATCAGGCCTATCGATT+GGG + chr1_3:53942326-53942345 Msa0125460:intron 45.0%
!! TTTGGTATCCTGACTTGGAG+AGG + chr1_3:53942729-53942748 Msa0125460:intron 45.0%
!! TTGGTATCCTGACTTGGAGA+GGG + chr1_3:53942730-53942749 Msa0125460:intron 45.0%
CGATGGGGGAATCAATTAAC+CGG - chr1_3:53942883-53942902 None:intergenic 45.0%
AAAGATGTGACACACGATGG+GGG - chr1_3:53942897-53942916 None:intergenic 45.0%
GTTGCTGCACCCATGAAATT+AGG - chr1_3:53943150-53943169 None:intergenic 45.0%
TGGGTGCAGCAACAAAATTG+AGG + chr1_3:53943157-53943176 Msa0125460:intron 45.0%
AGAACTCATCCGTGAAGAAG+AGG + chr1_3:53943217-53943236 Msa0125460:CDS 45.0%
CAAAACGTGGAGTCAATGAG+AGG + chr1_3:53943270-53943289 Msa0125460:CDS 45.0%
!! GAAGGTGTTCTGGCCTTATA+CGG - chr1_3:53943620-53943639 None:intergenic 45.0%
GCCCAAAAACAAAACTAGGG+TGG - chr1_3:53943706-53943725 None:intergenic 45.0%
GAAGCGCAGACAAATATCCT+TGG - chr1_3:53943728-53943747 None:intergenic 45.0%
! ATCTGAAGCATGGTTTCACG+TGG - chr1_3:53943874-53943893 None:intergenic 45.0%
CATCCTCTCACAATCAACAC+AGG - chr1_3:53943899-53943918 None:intergenic 45.0%
GGCCATATCTCTAGTTGACA+TGG - chr1_3:53943932-53943951 None:intergenic 45.0%
! GCTTCTTGAGCTCGTTTTGA+GGG + chr1_3:53943984-53944003 Msa0125460:intron 45.0%
!!! CTCGTTTTGAGGGTTGAGTT+AGG + chr1_3:53943994-53944013 Msa0125460:intron 45.0%
TGGTCTTCAGAATTTCGGCA+TGG - chr1_3:53944020-53944039 None:intergenic 45.0%
! TTTGAGGCCTGATTAGATGG+AGG + chr1_3:53944213-53944232 Msa0125460:intron 45.0%
GGAATCGGTTACATAGGTCA+AGG - chr1_3:53944355-53944374 None:intergenic 45.0%
ATGCAAGCACACATGAAGTG+AGG + chr1_3:53944510-53944529 Msa0125460:intron 45.0%
AGAGCTGTGATGCATTACGA+AGG + chr1_3:53944648-53944667 Msa0125460:intron 45.0%
AACAGGAAAAGCAAGCCAGT+TGG - chr1_3:53945032-53945051 None:intergenic 45.0%
GTTACCTGAGCCTTTCTAGA+GGG - chr1_3:53945158-53945177 None:intergenic 45.0%
GGCGAAGTGATGAATCTATG+AGG - chr1_3:53945241-53945260 None:intergenic 45.0%
! CTCTAGAGACTTCTAGAAGC+TGG - chr1_3:53945421-53945440 None:intergenic 45.0%
GACTTAAGCCCCAAGTAATG+AGG - chr1_3:53945466-53945485 None:intergenic 45.0%
ACAGGCTATAAATACCACCC+TGG + chr1_3:53945505-53945524 Msa0125460:intron 45.0%
ATCAAGGTCGTAGCACGTTT+GGG - chr1_3:53945605-53945624 None:intergenic 45.0%
GAAGGAAGAAGAAGTGAAGG+AGG + chr1_3:53945687-53945706 Msa0125460:intron 45.0%
GGTAGATCTGAGAGATAGAG+AGG + chr1_3:53945742-53945761 Msa0125460:intron 45.0%
AACTCCAAGAAGGGACATAC+AGG - chr1_3:53946019-53946038 None:intergenic 45.0%
! GTTACAATTTTGCCCTCGAG+TGG + chr1_3:53946177-53946196 Msa0125460:intron 45.0%
AACGAGTTCCTACGTAGGAA+CGG - chr1_3:53946255-53946274 None:intergenic 45.0%
GCCTTGAGAACAATGTAGTC+AGG - chr1_3:53946278-53946297 None:intergenic 45.0%
CATGGGAAAAGGAGAGTTGT+TGG + chr1_3:53946469-53946488 Msa0125460:intron 45.0%
TTGGCCTGCAGTGAAAAGAA+AGG - chr1_3:53946526-53946545 None:intergenic 45.0%
TTCTGATGTGTCTGACTCTC+TGG + chr1_3:53946708-53946727 Msa0125460:CDS 45.0%
AGAAGTTCATCCTCCAACTG+AGG + chr1_3:53946807-53946826 Msa0125460:CDS 45.0%
TTGTTACAAGCCTCAGTTGG+AGG - chr1_3:53946820-53946839 None:intergenic 45.0%
CCTTTGTTACAAGCCTCAGT+TGG - chr1_3:53946823-53946842 None:intergenic 45.0%
CCAACTGAGGCTTGTAACAA+AGG + chr1_3:53946820-53946839 Msa0125460:CDS 45.0%
! GAGGCTTGTAACAAAGGCAT+AGG + chr1_3:53946826-53946845 Msa0125460:CDS 45.0%
ATAGCATCATGTGACACTGG+TGG + chr1_3:53947129-53947148 Msa0125460:CDS 45.0%
AAAATAGATGGTCGGCCATC+TGG + chr1_3:53947162-53947181 Msa0125460:CDS 45.0%
CAAAGAGTCTGGAAGTGGAA+AGG + chr1_3:53947212-53947231 Msa0125460:CDS 45.0%
GCTGGAAAAAATGAGTCCGA+GGG + chr1_3:53947234-53947253 Msa0125460:CDS 45.0%
GTGGATCCCCCTACTTTAAA+TGG + chr1_3:53947619-53947638 Msa0125460:intron 45.0%
! TTCCATCTTGTTTGCACCAC+CGG + chr1_3:53947798-53947817 Msa0125460:intron 45.0%
TGTACATCTGTCTAGGCCTT+TGG - chr1_3:53947875-53947894 None:intergenic 45.0%
!!! TCAGATTCTTTTTGGGGTGG+TGG - chr1_3:53947929-53947948 None:intergenic 45.0%
!! GCCTTGTTGTTGTTAGGTGA+AGG + chr1_3:53948072-53948091 Msa0125460:intron 45.0%
GCCTTCACCTAACAACAACA+AGG - chr1_3:53948076-53948095 None:intergenic 45.0%
! TTCTAATGGATAGGACGAGG+AGG + chr1_3:53948184-53948203 Msa0125460:intron 45.0%
CCCAACATCAAAGACGAAGT+TGG + chr1_3:53948227-53948246 Msa0125460:CDS 45.0%
CCCAACTTCGTCTTTGATGT+TGG - chr1_3:53948231-53948250 None:intergenic 45.0%
! AGTTGTAACTTGTGAGGCAG+AGG - chr1_3:53948441-53948460 None:intergenic 45.0%
! GGACGAAGTTGTAACTTGTG+AGG - chr1_3:53948447-53948466 None:intergenic 45.0%
GTTTGAACCATTGAGACCAC+AGG - chr1_3:53948587-53948606 None:intergenic 45.0%
AGGAACATGACTATGAGTGG+CGG - chr1_3:53948669-53948688 None:intergenic 45.0%
CCCCATGATAGCATTTCTGT+AGG - chr1_3:53948696-53948715 None:intergenic 45.0%
TGAACACGACGAGCTAGAAT+GGG - chr1_3:53948750-53948769 None:intergenic 45.0%
AAAGATTGGCGATGACACCA+AGG - chr1_3:53948810-53948829 None:intergenic 45.0%
GAAACTAATGCTGTCCAGTG+TGG + chr1_3:53948854-53948873 Msa0125460:CDS 45.0%
TCCTGTGTTCTCAAGCCAAA+GGG - chr1_3:53948884-53948903 None:intergenic 45.0%
ATCCTGTGTTCTCAAGCCAA+AGG - chr1_3:53948885-53948904 None:intergenic 45.0%
GCCACTACACAGTAGATCTA+TGG + chr1_3:53949015-53949034 Msa0125460:CDS 45.0%
CCCATAGATCTACTGTGTAG+TGG - chr1_3:53949019-53949038 None:intergenic 45.0%
CAGTATGCTCATCATCAAGC+AGG - chr1_3:53949132-53949151 None:intergenic 45.0%
GGATTCGAGTGTCTGAGAAA+TGG + chr1_3:53949178-53949197 Msa0125460:CDS 45.0%
ATTCAGCTTTCCTGGAGACT+TGG + chr1_3:53949222-53949241 Msa0125460:CDS 45.0%
TCATTTGCATCCAAGTCTCC+AGG - chr1_3:53949235-53949254 None:intergenic 45.0%
TTGGATGCAAATGATGACCG+CGG + chr1_3:53949241-53949260 Msa0125460:CDS 45.0%
CTCGGAATCCATGATCATGA+TGG - chr1_3:53949309-53949328 None:intergenic 45.0%
CATCATGATCATGGATTCCG+AGG + chr1_3:53949307-53949326 Msa0125460:CDS 45.0%
ATGATCATGGATTCCGAGGA+GGG + chr1_3:53949311-53949330 Msa0125460:CDS 45.0%
! AAGGCATGCTAGTAACTTGC+GGG - chr1_3:53949381-53949400 None:intergenic 45.0%
CATGCCTTATGTCAATGGAC+AGG + chr1_3:53949393-53949412 Msa0125460:CDS 45.0%
GATTACAAACCAATGGCAGG+TGG + chr1_3:53949426-53949445 Msa0125460:CDS 45.0%
ATACAATAGATCAGGACCCG+TGG - chr1_3:53949452-53949471 None:intergenic 45.0%
GGTCCTGATCTATTGTATGC+AGG + chr1_3:53949454-53949473 Msa0125460:CDS 45.0%
ACTGTATTCAGGCCCTCAAA+TGG + chr1_3:53949556-53949575 Msa0125460:CDS 45.0%
GCCCTCAAATGGTTCTTAGA+GGG + chr1_3:53949567-53949586 Msa0125460:exon 45.0%
ATCCGAAAAGAGAGGATGCA+TGG - chr1_3:53949825-53949844 None:intergenic 45.0%
TCCATAGCTGACAAGGGTTA+CGG - chr1_3:53949864-53949883 None:intergenic 45.0%
!!! TTTTATTTTTTTTGTAATTT+TGG + chr1_3:53935748-53935767 Msa0125460:intron 5.0%
!! ATTATATTAGTTAATTAAAT+CGG - chr1_3:53939896-53939915 None:intergenic 5.0%
!!! CAAATTTTTTATTTTTTTTA+TGG + chr1_3:53945639-53945658 Msa0125460:intron 5.0%
!!! TTATTTTTATTTTTTTTGAA+CGG - chr1_3:53946105-53946124 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAGAT+TGG + chr1_3:53949651-53949670 Msa0125460:three_prime_UTR 5.0%
CGCTACTCTTTCACGATTCC+AGG + chr1_3:53935561-53935580 Msa0125460:five_prime_UTR 50.0%
!! AATGGCTGGAGTGTTGAGTG+AGG + chr1_3:53936117-53936136 Msa0125460:exon 50.0%
! TTGAGTGAGGAGTCTGGAGT+GGG + chr1_3:53936130-53936149 Msa0125460:CDS 50.0%
! TCTGGAGTGGGAAATTCACG+CGG + chr1_3:53936142-53936161 Msa0125460:CDS 50.0%
GATTCCATTCTCCACCTGCT+CGG - chr1_3:53936209-53936228 None:intergenic 50.0%
CGTCTACTTCTCCCCCTTAT+TGG + chr1_3:53936230-53936249 Msa0125460:CDS 50.0%
TCGTCAGTGTCCCAATAAGG+GGG - chr1_3:53936244-53936263 None:intergenic 50.0%
GTTGCGACTCATAATCGCTG+AGG - chr1_3:53936464-53936483 None:intergenic 50.0%
CTCGGTTGTGGAACTACAGA+AGG + chr1_3:53936546-53936565 Msa0125460:intron 50.0%
! GAACCTTTTCTAGGCCAGAG+TGG + chr1_3:53937332-53937351 Msa0125460:intron 50.0%
! ACCTTTTCTAGGCCAGAGTG+GGG + chr1_3:53937334-53937353 Msa0125460:intron 50.0%
!! GATCCTTTCATGATGGGTCG+TGG + chr1_3:53937454-53937473 Msa0125460:intron 50.0%
CAACCACGACCCATCATGAA+AGG - chr1_3:53937460-53937479 None:intergenic 50.0%
!! CATGATGGGTCGTGGTTGAT+TGG + chr1_3:53937462-53937481 Msa0125460:intron 50.0%
! AACTGGCCTGTATCACACAC+TGG + chr1_3:53938176-53938195 Msa0125460:intron 50.0%
! TGGAAGAAGGAGCATGACTG+GGG + chr1_3:53938806-53938825 Msa0125460:CDS 50.0%
GAGGAAAGACGAAGCAAGCT+TGG + chr1_3:53939190-53939209 Msa0125460:CDS 50.0%
AAAGCTAGGTGTCTCGCTTC+TGG + chr1_3:53939268-53939287 Msa0125460:intron 50.0%
! CCCAAACGTTTTCGCCTTTC+TGG - chr1_3:53939473-53939492 None:intergenic 50.0%
GCGAAAACGTTTGGGCAATC+TGG + chr1_3:53939478-53939497 Msa0125460:intron 50.0%
ACTTAAAGGTCTGGCGCAAG+TGG - chr1_3:53939935-53939954 None:intergenic 50.0%
!! TGCGCCAGACCTTTAAGTTG+TGG + chr1_3:53939937-53939956 Msa0125460:intron 50.0%
!! GCGCCAGACCTTTAAGTTGT+GGG + chr1_3:53939938-53939957 Msa0125460:intron 50.0%
! ATCTAGGCGCCGTATGTCTA+GGG + chr1_3:53940041-53940060 Msa0125460:CDS 50.0%
GCCAGACTAGCAAGAAAGGT+TGG + chr1_3:53940175-53940194 Msa0125460:CDS 50.0%
CCCAACCTTTCTTGCTAGTC+TGG - chr1_3:53940179-53940198 None:intergenic 50.0%
TGGGGGAATTTGTGGGAGTT+AGG + chr1_3:53941039-53941058 Msa0125460:intron 50.0%
GTCTCACAGAATTAGGGCGT+AGG + chr1_3:53941658-53941677 Msa0125460:CDS 50.0%
CTCCCGGACAGACAAAATTC+AGG - chr1_3:53941797-53941816 None:intergenic 50.0%
!! AAACCGGCTTGTAAGGTGAG+GGG - chr1_3:53942269-53942288 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr1_3:53942271-53942290 None:intergenic 50.0%
TTGTGGATGGCCCAATCGAT+AGG - chr1_3:53942339-53942358 None:intergenic 50.0%
ATCCATGCAACAAGCCCAAC+AGG + chr1_3:53942364-53942383 Msa0125460:intron 50.0%
AGTGAACTCACCTTACCAGC+CGG + chr1_3:53942466-53942485 Msa0125460:intron 50.0%
!! TGGTATCCTGACTTGGAGAG+GGG + chr1_3:53942731-53942750 Msa0125460:intron 50.0%
!! TCCGTGAAGAAGAGGCATCA+TGG + chr1_3:53943225-53943244 Msa0125460:CDS 50.0%
GCCATGATGCCTCTTCTTCA+CGG - chr1_3:53943229-53943248 None:intergenic 50.0%
GGGTGGAGTTAGTACCATCT+TGG - chr1_3:53943689-53943708 None:intergenic 50.0%
GCACAACTTACACTCAGGAC+TGG - chr1_3:53943756-53943775 None:intergenic 50.0%
GAAGCATGGTTTCACGTGGT+TGG - chr1_3:53943870-53943889 None:intergenic 50.0%
CAAAACGAGCTCAAGAAGCC+AGG - chr1_3:53943983-53944002 None:intergenic 50.0%
! GGCTTCTTGAGCTCGTTTTG+AGG + chr1_3:53943983-53944002 Msa0125460:intron 50.0%
! GGTCTGAACACCCTCTAGAA+AGG + chr1_3:53945145-53945164 Msa0125460:intron 50.0%
! AACACCCTCTAGAAAGGCTC+AGG + chr1_3:53945151-53945170 Msa0125460:intron 50.0%
GGTTACCTGAGCCTTTCTAG+AGG - chr1_3:53945159-53945178 None:intergenic 50.0%
!! AAGGGCATTTGTCCTTCGAG+AGG - chr1_3:53945180-53945199 None:intergenic 50.0%
TTGTCCCAAAGCTCGTGCTT+GGG + chr1_3:53945261-53945280 Msa0125460:intron 50.0%
TGGAGGGTCTCTAAGTCCTT+AGG - chr1_3:53945310-53945329 None:intergenic 50.0%
AGGCCTTTATGAGGGGTTCT+GGG - chr1_3:53945339-53945358 None:intergenic 50.0%
! AGACTTCTAGAAGCTGGCTG+AGG - chr1_3:53945415-53945434 None:intergenic 50.0%
CGAGAAACCAAGCCCATAAC+AGG + chr1_3:53945487-53945506 Msa0125460:intron 50.0%
GATCAAGGTCGTAGCACGTT+TGG - chr1_3:53945606-53945625 None:intergenic 50.0%
AACGTGCTACGACCTTGATC+TGG + chr1_3:53945606-53945625 Msa0125460:intron 50.0%
ACGTGCTACGACCTTGATCT+GGG + chr1_3:53945607-53945626 Msa0125460:intron 50.0%
TGCAAACACGACCCAGATCA+AGG - chr1_3:53945621-53945640 None:intergenic 50.0%
AGAGTTCAGATGGATGTGGC+AGG + chr1_3:53945786-53945805 Msa0125460:intron 50.0%
AGTGCCTGTATGTCCCTTCT+TGG + chr1_3:53946012-53946031 Msa0125460:intron 50.0%
! TTAGCTTTCGTCGCGTCTTG+CGG + chr1_3:53946056-53946075 Msa0125460:intron 50.0%
GTTCGTAAGAACCCACTCGA+GGG - chr1_3:53946192-53946211 None:intergenic 50.0%
GATGAAGGGACGTAAGATCG+AGG - chr1_3:53946226-53946245 None:intergenic 50.0%
AGTTCCTACGTAGGAACGGT+GGG - chr1_3:53946251-53946270 None:intergenic 50.0%
TCAGGAACGAGTTCCTACGT+AGG - chr1_3:53946260-53946279 None:intergenic 50.0%
CACTGCAGGCCAAACAAAAG+CGG + chr1_3:53946533-53946552 Msa0125460:intron 50.0%
AGTAAAGGACAAAGGGAGGG+AGG + chr1_3:53946567-53946586 Msa0125460:CDS 50.0%
AGGACTACTATGGCTGTGCA+TGG + chr1_3:53946592-53946611 Msa0125460:CDS 50.0%
GGACTACTATGGCTGTGCAT+GGG + chr1_3:53946593-53946612 Msa0125460:CDS 50.0%
GGGACGAACCAAGAAGACAA+TGG + chr1_3:53946613-53946632 Msa0125460:CDS 50.0%
GATGTGTCTGACTCTCTGGA+TGG + chr1_3:53946712-53946731 Msa0125460:CDS 50.0%
TTGCCTGCTAGGTGACTTCT+GGG - chr1_3:53947001-53947020 None:intergenic 50.0%
GGCATAGCATCATGTGACAC+TGG + chr1_3:53947126-53947145 Msa0125460:CDS 50.0%
CATCATGTGACACTGGTGGT+TGG + chr1_3:53947133-53947152 Msa0125460:CDS 50.0%
GGCTGGAAAAAATGAGTCCG+AGG + chr1_3:53947233-53947252 Msa0125460:CDS 50.0%
CAATGTGACAACAGCACCCT+CGG - chr1_3:53947253-53947272 None:intergenic 50.0%
!! GGGTGCTGTTGTCACATTGA+AGG + chr1_3:53947254-53947273 Msa0125460:CDS 50.0%
GGCCACACAACATTGAAGCA+AGG - chr1_3:53947444-53947463 None:intergenic 50.0%
! TCCATCTTGTTTGCACCACC+GGG + chr1_3:53947799-53947818 Msa0125460:intron 50.0%
!! CATTGTTGATTTGTCCCCGG+TGG - chr1_3:53947817-53947836 None:intergenic 50.0%
!!! GATTCTTTTTGGGGTGGTGG+TGG - chr1_3:53947926-53947945 None:intergenic 50.0%
ATTTGACCAGGCGAGCTACT+AGG - chr1_3:53948317-53948336 None:intergenic 50.0%
ACTTGTGAGGCAGAGGTGAA+GGG - chr1_3:53948434-53948453 None:intergenic 50.0%
AACTTGTGAGGCAGAGGTGA+AGG - chr1_3:53948435-53948454 None:intergenic 50.0%
ATTGAGACCACAGGAGCAGT+TGG - chr1_3:53948578-53948597 None:intergenic 50.0%
AACTGCTCCTGTGGTCTCAA+TGG + chr1_3:53948577-53948596 Msa0125460:CDS 50.0%
GGAACATGACTATGAGTGGC+GGG - chr1_3:53948668-53948687 None:intergenic 50.0%
CTGAACACGACGAGCTAGAA+TGG - chr1_3:53948751-53948770 None:intergenic 50.0%
!! CATTCTAGCTCGTCGTGTTC+AGG + chr1_3:53948749-53948768 Msa0125460:CDS 50.0%
!! TCCCTTTGGCTTGAGAACAC+AGG + chr1_3:53948880-53948899 Msa0125460:CDS 50.0%
GGGCTGATCATACATGCTTC+TGG - chr1_3:53948957-53948976 None:intergenic 50.0%
ATACTGTTGGAAAGACGGCC+AGG + chr1_3:53949146-53949165 Msa0125460:CDS 50.0%
TACTGTTGGAAAGACGGCCA+GGG + chr1_3:53949147-53949166 Msa0125460:CDS 50.0%
CATGATCATGGATTCCGAGG+AGG + chr1_3:53949310-53949329 Msa0125460:CDS 50.0%
! GAGGGTATAGCTCATCCCAT+GGG + chr1_3:53949329-53949348 Msa0125460:CDS 50.0%
GGCCCTCAAATGGTTCTTAG+AGG + chr1_3:53949566-53949585 Msa0125460:CDS 50.0%
GCAGCAACAGACGAGAGCAA+AGG - chr1_3:53935467-53935486 None:intergenic 55.0%
!! GGAGTGTTGAGTGAGGAGTC+TGG + chr1_3:53936124-53936143 Msa0125460:CDS 55.0%
GTTGAGTGAGGAGTCTGGAG+TGG + chr1_3:53936129-53936148 Msa0125460:CDS 55.0%
CTGGAGTGGGAAATTCACGC+GGG + chr1_3:53936143-53936162 Msa0125460:CDS 55.0%
! GCATTCTACCGGGGAAGCAT+TGG + chr1_3:53936168-53936187 Msa0125460:CDS 55.0%
!! TTCTACCGGGGAAGCATTGG+CGG + chr1_3:53936171-53936190 Msa0125460:CDS 55.0%
TCTTCCGAGCAGGTGGAGAA+TGG + chr1_3:53936202-53936221 Msa0125460:CDS 55.0%
TGGGACACTGACGAAGACGA+CGG + chr1_3:53936250-53936269 Msa0125460:CDS 55.0%
! CCTTTTCTAGGCCAGAGTGG+GGG + chr1_3:53937335-53937354 Msa0125460:intron 55.0%
! AGAAGGAGCATGACTGGGGA+TGG + chr1_3:53938810-53938829 Msa0125460:CDS 55.0%
GCTGCAGGGAGAAATCAGAC+AGG + chr1_3:53939080-53939099 Msa0125460:intron 55.0%
! CATCTAGGCGCCGTATGTCT+AGG + chr1_3:53940040-53940059 Msa0125460:CDS 55.0%
GAGGGCCAGACTAGCAAGAA+AGG + chr1_3:53940171-53940190 Msa0125460:CDS 55.0%
GGGTCCCCAAAATCGTACGA+AGG + chr1_3:53940332-53940351 Msa0125460:CDS 55.0%
!! GTCCTGTTGGGCTTGTTGCA+TGG - chr1_3:53942369-53942388 None:intergenic 55.0%
TGCAACAAGCCCAACAGGAC+TGG + chr1_3:53942369-53942388 Msa0125460:intron 55.0%
!! GGTATCCTGACTTGGAGAGG+GGG + chr1_3:53942732-53942751 Msa0125460:intron 55.0%
AGTATCCCCCTCTCCAAGTC+AGG - chr1_3:53942740-53942759 None:intergenic 55.0%
! GAGGCATCATGGCAAGCTGA+AGG + chr1_3:53943236-53943255 Msa0125460:CDS 55.0%
AGGCTCAGGTAACCTCTCGA+AGG + chr1_3:53945165-53945184 Msa0125460:intron 55.0%
!! CAAGCACGAGCTTTGGGACA+AGG - chr1_3:53945262-53945281 None:intergenic 55.0%
CTTGTCCCAAAGCTCGTGCT+TGG + chr1_3:53945260-53945279 Msa0125460:intron 55.0%
TGTCCCAAAGCTCGTGCTTG+GGG + chr1_3:53945262-53945281 Msa0125460:intron 55.0%
GGACTTAGAGACCCTCCAGA+AGG + chr1_3:53945312-53945331 Msa0125460:intron 55.0%
GGACCCAGAACCCCTCATAA+AGG + chr1_3:53945333-53945352 Msa0125460:intron 55.0%
CAGGCCTTTATGAGGGGTTC+TGG - chr1_3:53945340-53945359 None:intergenic 55.0%
GGCGTTCAGGCCTTTATGAG+GGG - chr1_3:53945346-53945365 None:intergenic 55.0%
GGGCGTTCAGGCCTTTATGA+GGG - chr1_3:53945347-53945366 None:intergenic 55.0%
! AGGGCGTTCAGGCCTTTATG+AGG - chr1_3:53945348-53945367 None:intergenic 55.0%
! CTTCTAGAAGCTGGCTGAGG+CGG - chr1_3:53945412-53945431 None:intergenic 55.0%
CTGCTTGAGAAGGCTCTCCA+GGG - chr1_3:53945525-53945544 None:intergenic 55.0%
CTGGAGAGCCTTCTCAAGCA+GGG + chr1_3:53945524-53945543 Msa0125460:intron 55.0%
ATCGTGCGATCCTACGTGCT+GGG - chr1_3:53945565-53945584 None:intergenic 55.0%
AGGTCGTAGCACGTTTGGGT+GGG - chr1_3:53945601-53945620 None:intergenic 55.0%
AAGGTCGTAGCACGTTTGGG+TGG - chr1_3:53945602-53945621 None:intergenic 55.0%
GGTTCGTAAGAACCCACTCG+AGG - chr1_3:53946193-53946212 None:intergenic 55.0%
!! AGGAACGGTGGGCTGATGAA+GGG - chr1_3:53946240-53946259 None:intergenic 55.0%
!! TAGGAACGGTGGGCTGATGA+AGG - chr1_3:53946241-53946260 None:intergenic 55.0%
GAGTTCCTACGTAGGAACGG+TGG - chr1_3:53946252-53946271 None:intergenic 55.0%
GAGGGAGGAGAGGACTACTA+TGG + chr1_3:53946582-53946601 Msa0125460:CDS 55.0%
AAGCCCAGAAGTCACCTAGC+AGG + chr1_3:53946995-53947014 Msa0125460:CDS 55.0%
CTTGCCTGCTAGGTGACTTC+TGG - chr1_3:53947002-53947021 None:intergenic 55.0%
GAGTCTGGAAGTGGAAAGGC+TGG + chr1_3:53947216-53947235 Msa0125460:CDS 55.0%
! CCATCTTGTTTGCACCACCG+GGG + chr1_3:53947800-53947819 Msa0125460:intron 55.0%
GGAGGACTGACAGGTGAAGA+TGG - chr1_3:53948296-53948315 None:intergenic 55.0%
GAGCTACTAGGAGGACTGAC+AGG - chr1_3:53948305-53948324 None:intergenic 55.0%
TTGTGAGGCAGAGGTGAAGG+GGG - chr1_3:53948432-53948451 None:intergenic 55.0%
CTTGTGAGGCAGAGGTGAAG+GGG - chr1_3:53948433-53948452 None:intergenic 55.0%
!! CTCCTTTGGTTTCTGGTCCC+AGG + chr1_3:53948552-53948571 Msa0125460:CDS 55.0%
GCACTCATTGAGCGTGCAAG+TGG - chr1_3:53948617-53948636 None:intergenic 55.0%
GTGAGGGATCAGGACCTAAC+CGG - chr1_3:53948646-53948665 None:intergenic 55.0%
!! TGACTATGAGTGGCGGGTGA+GGG - chr1_3:53948662-53948681 None:intergenic 55.0%
!! ATGACTATGAGTGGCGGGTG+AGG - chr1_3:53948663-53948682 None:intergenic 55.0%
CGAGCTAGAATGGGTCAGAC+TGG - chr1_3:53948741-53948760 None:intergenic 55.0%
GGCGATGACACCAAGGTAGA+TGG - chr1_3:53948803-53948822 None:intergenic 55.0%
GTCCAGTGTGGTGTTCCCTT+TGG + chr1_3:53948866-53948885 Msa0125460:CDS 55.0%
AGCCAAAGGGAACACCACAC+TGG - chr1_3:53948871-53948890 None:intergenic 55.0%
AGCATGTATGATCAGCCCGC+TGG + chr1_3:53948959-53948978 Msa0125460:CDS 55.0%
CAACGCTTGATTCTGACGCC+CGG - chr1_3:53949074-53949093 None:intergenic 55.0%
!! GCGTCAGAATCAAGCGTTGG+TGG + chr1_3:53949075-53949094 Msa0125460:CDS 55.0%
AAAGACGGCCAGGGCAAGTT+TGG + chr1_3:53949156-53949175 Msa0125460:CDS 55.0%
AAGACGGCCAGGGCAAGTTT+GGG + chr1_3:53949157-53949176 Msa0125460:CDS 55.0%
CTCGAATCCCAAACTTGCCC+TGG - chr1_3:53949167-53949186 None:intergenic 55.0%
AAGAACTGGTCGAGGATCCG+CGG - chr1_3:53949261-53949280 None:intergenic 55.0%
GATCCTCGACCAGTTCTTGC+AGG + chr1_3:53949263-53949282 Msa0125460:CDS 55.0%
GGGATGAGCTATACCCTCCT+CGG - chr1_3:53949327-53949346 None:intergenic 55.0%
! GGAGGGTATAGCTCATCCCA+TGG + chr1_3:53949328-53949347 Msa0125460:CDS 55.0%
AAACCAATGGCAGGTGGCCA+CGG + chr1_3:53949432-53949451 Msa0125460:CDS 55.0%
GCCGTAACCCTTGTCAGCTA+TGG + chr1_3:53949860-53949879 Msa0125460:three_prime_UTR 55.0%
TCACGCGGGCAGCATTCTAC+CGG + chr1_3:53936157-53936176 Msa0125460:CDS 60.0%
CCATTCCGCCAATGCTTCCC+CGG - chr1_3:53936179-53936198 None:intergenic 60.0%
!! GGGAAGCATTGGCGGAATGG+AGG + chr1_3:53936179-53936198 Msa0125460:CDS 60.0%
GGAATGGAGGTCTTCCGAGC+AGG + chr1_3:53936192-53936211 Msa0125460:CDS 60.0%
ATGGAGGTCTTCCGAGCAGG+TGG + chr1_3:53936195-53936214 Msa0125460:CDS 60.0%
GACACTGACGAAGACGACGG+TGG + chr1_3:53936253-53936272 Msa0125460:CDS 60.0%
CCCCCACTCTGGCCTAGAAA+AGG - chr1_3:53937338-53937357 None:intergenic 60.0%
CCTGCTGAATTCCCCCACTC+TGG - chr1_3:53937349-53937368 None:intergenic 60.0%
CCAGAGTGGGGGAATTCAGC+AGG + chr1_3:53937346-53937365 Msa0125460:intron 60.0%
AGGTCTGGCGCAAGTGGCAA+TGG - chr1_3:53939929-53939948 None:intergenic 60.0%
GCACCCCTCACCTTACAAGC+CGG + chr1_3:53942263-53942282 Msa0125460:intron 60.0%
GTCCCAAAGCTCGTGCTTGG+GGG + chr1_3:53945263-53945282 Msa0125460:intron 60.0%
TCCCAAAGCTCGTGCTTGGG+GGG + chr1_3:53945264-53945283 Msa0125460:intron 60.0%
!! GGGTTCTGGGTCCTTCTGGA+GGG - chr1_3:53945326-53945345 None:intergenic 60.0%
!! TGAGGGGTTCTGGGTCCTTC+TGG - chr1_3:53945330-53945349 None:intergenic 60.0%
AGGCCTGAACGCCCTCCAAA+AGG + chr1_3:53945353-53945372 Msa0125460:intron 60.0%
GGCCTGAACGCCCTCCAAAA+GGG + chr1_3:53945354-53945373 Msa0125460:intron 60.0%
! CTTAGGCCTCGAGGCCCTTT+TGG - chr1_3:53945371-53945390 None:intergenic 60.0%
CAAAAGGGCCTCGAGGCCTA+AGG + chr1_3:53945369-53945388 Msa0125460:intron 60.0%
CTTGAGAAGGCTCTCCAGGG+TGG - chr1_3:53945522-53945541 None:intergenic 60.0%
CCTGCTTGAGAAGGCTCTCC+AGG - chr1_3:53945526-53945545 None:intergenic 60.0%
CCTGGAGAGCCTTCTCAAGC+AGG + chr1_3:53945523-53945542 Msa0125460:intron 60.0%
CCTGGCTACCCTGCTTGAGA+AGG - chr1_3:53945535-53945554 None:intergenic 60.0%
CCTTCTCAAGCAGGGTAGCC+AGG + chr1_3:53945532-53945551 Msa0125460:intron 60.0%
TACGTGCTGGGACTCGATCC+TGG - chr1_3:53945553-53945572 None:intergenic 60.0%
AGGATCGAGTCCCAGCACGT+AGG + chr1_3:53945552-53945571 Msa0125460:intron 60.0%
GATCGTGCGATCCTACGTGC+TGG - chr1_3:53945566-53945585 None:intergenic 60.0%
GGTCGTAGCACGTTTGGGTG+GGG - chr1_3:53945600-53945619 None:intergenic 60.0%
! TGTGGCAGGCGCTGTGTTTG+AGG + chr1_3:53945800-53945819 Msa0125460:intron 60.0%
TCAGCCCACCGTTCCTACGT+AGG + chr1_3:53946244-53946263 Msa0125460:intron 60.0%
AGGACAAAGGGAGGGAGGAG+AGG + chr1_3:53946572-53946591 Msa0125460:CDS 60.0%
GCATCTGCTGCAGCACCAGA+TGG - chr1_3:53947180-53947199 None:intergenic 60.0%
!! TCTGGTGCTGCAGCAGATGC+TGG + chr1_3:53947180-53947199 Msa0125460:CDS 60.0%
!! CTGGTGCTGCAGCAGATGCT+GGG + chr1_3:53947181-53947200 Msa0125460:CDS 60.0%
!! TGGTGCTGCAGCAGATGCTG+GGG + chr1_3:53947182-53947201 Msa0125460:CDS 60.0%
CCCCGGTGGTGCAAACAAGA+TGG - chr1_3:53947803-53947822 None:intergenic 60.0%
AGTCCTCCTAGTAGCTCGCC+TGG + chr1_3:53948308-53948327 Msa0125460:CDS 60.0%
TGACCAGGCGAGCTACTAGG+AGG - chr1_3:53948314-53948333 None:intergenic 60.0%
TGTGAGGCAGAGGTGAAGGG+GGG - chr1_3:53948431-53948450 None:intergenic 60.0%
GGCCTGGGACCAGAAACCAA+AGG - chr1_3:53948557-53948576 None:intergenic 60.0%
! ACCACAGGAGCAGTTGGCCT+GGG - chr1_3:53948572-53948591 None:intergenic 60.0%
GCACGCTCAATGAGTGCAGC+TGG + chr1_3:53948620-53948639 Msa0125460:CDS 60.0%
GCTCAATGAGTGCAGCTGGC+CGG + chr1_3:53948624-53948643 Msa0125460:CDS 60.0%
ATGAGTGCAGCTGGCCGGTT+AGG + chr1_3:53948629-53948648 Msa0125460:CDS 60.0%
GGTCAGACTGGCAGCAGTTG+AGG - chr1_3:53948729-53948748 None:intergenic 60.0%
GAGTTCCCAGCCTGCACATC+CGG + chr1_3:53949052-53949071 Msa0125460:CDS 60.0%
AGTTCCCAGCCTGCACATCC+GGG + chr1_3:53949053-53949072 Msa0125460:CDS 60.0%
ATTCTGACGCCCGGATGTGC+AGG - chr1_3:53949065-53949084 None:intergenic 60.0%
CGGGCGTCAGAATCAAGCGT+TGG + chr1_3:53949072-53949091 Msa0125460:CDS 60.0%
GAGCCTGCAAGAACTGGTCG+AGG - chr1_3:53949269-53949288 None:intergenic 60.0%
ACGCTCGAGCCTGCAAGAAC+TGG - chr1_3:53949275-53949294 None:intergenic 60.0%
AACCAATGGCAGGTGGCCAC+GGG + chr1_3:53949433-53949452 Msa0125460:CDS 60.0%
GCTGACAAGGGTTACGGCCT+TGG - chr1_3:53949858-53949877 None:intergenic 60.0%
CACGCGGGCAGCATTCTACC+GGG + chr1_3:53936158-53936177 Msa0125460:CDS 65.0%
ACGCGGGCAGCATTCTACCG+GGG + chr1_3:53936159-53936178 Msa0125460:CDS 65.0%
!! CCGGGGAAGCATTGGCGGAA+TGG + chr1_3:53936176-53936195 Msa0125460:CDS 65.0%
GCCCCCCAAGCACGAGCTTT+GGG - chr1_3:53945268-53945287 None:intergenic 65.0%
AGCCCCCCAAGCACGAGCTT+TGG - chr1_3:53945269-53945288 None:intergenic 65.0%
!! GGGGTTCTGGGTCCTTCTGG+AGG - chr1_3:53945327-53945346 None:intergenic 65.0%
!!! GGCCCTTTTGGAGGGCGTTC+AGG - chr1_3:53945359-53945378 None:intergenic 65.0%
! GGCCTCGAGGCCCTTTTGGA+GGG - chr1_3:53945367-53945386 None:intergenic 65.0%
! AGGCCTCGAGGCCCTTTTGG+AGG - chr1_3:53945368-53945387 None:intergenic 65.0%
GCCTAAGGCGCGCCCTTCTT+GGG + chr1_3:53945384-53945403 Msa0125460:intron 65.0%
CCTAAGGCGCGCCCTTCTTG+GGG + chr1_3:53945385-53945404 Msa0125460:intron 65.0%
CTAAGGCGCGCCCTTCTTGG+GGG + chr1_3:53945386-53945405 Msa0125460:intron 65.0%
TTTCGTCGCGTCTTGCGGCG+TGG + chr1_3:53946061-53946080 Msa0125460:intron 65.0%
GCAGAGGTGAAGGGGGGAGA+TGG - chr1_3:53948425-53948444 None:intergenic 65.0%
TCCCAGGCCAACTGCTCCTG+TGG + chr1_3:53948568-53948587 Msa0125460:CDS 65.0%
GACCACAGGAGCAGTTGGCC+TGG - chr1_3:53948573-53948592 None:intergenic 65.0%
!! TGAGTGGCGGGTGAGGGATC+AGG - chr1_3:53948656-53948675 None:intergenic 65.0%
CGCCCTCCAAAAGGGCCTCG+AGG + chr1_3:53945362-53945381 Msa0125460:intron 70.0%
GGCCTAAGGCGCGCCCTTCT+TGG + chr1_3:53945383-53945402 Msa0125460:intron 70.0%
! CCCCAAGAAGGGCGCGCCTT+AGG - chr1_3:53945388-53945407 None:intergenic 70.0%
GCTGAGGCGGCCCCCAAGAA+GGG - chr1_3:53945399-53945418 None:intergenic 70.0%
GACGCCCGGATGTGCAGGCT+GGG - chr1_3:53949060-53949079 None:intergenic 70.0%
TGACGCCCGGATGTGCAGGC+TGG - chr1_3:53949061-53949080 None:intergenic 70.0%
GACCCGTGGCCACCTGCCAT+TGG - chr1_3:53949438-53949457 None:intergenic 70.0%
AGGGCGCGCCTTAGGCCTCG+AGG - chr1_3:53945380-53945399 None:intergenic 75.0%
GGCTGAGGCGGCCCCCAAGA+AGG - chr1_3:53945400-53945419 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 53935441 53949962 53935441 ID=Msa0125460;Name=Msa0125460
chr1_3 mRNA 53935441 53949962 53935441 ID=Msa0125460-mRNA-1;Parent=Msa0125460;Name=Msa0125460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=145|1|1|1|0.91|0.76|13|377|1131
chr1_3 exon 53935441 53935582 53935441 ID=Msa0125460-mRNA-1:exon:16551;Parent=Msa0125460-mRNA-1
chr1_3 exon 53936115 53936274 53936115 ID=Msa0125460-mRNA-1:exon:16552;Parent=Msa0125460-mRNA-1
chr1_3 exon 53937538 53937649 53937538 ID=Msa0125460-mRNA-1:exon:16553;Parent=Msa0125460-mRNA-1
chr1_3 exon 53938432 53938520 53938432 ID=Msa0125460-mRNA-1:exon:16554;Parent=Msa0125460-mRNA-1
chr1_3 exon 53938637 53938705 53938637 ID=Msa0125460-mRNA-1:exon:16555;Parent=Msa0125460-mRNA-1
chr1_3 exon 53938789 53938921 53938789 ID=Msa0125460-mRNA-1:exon:16556;Parent=Msa0125460-mRNA-1
chr1_3 exon 53939087 53939245 53939087 ID=Msa0125460-mRNA-1:exon:16557;Parent=Msa0125460-mRNA-1
chr1_3 exon 53940008 53940353 53940008 ID=Msa0125460-mRNA-1:exon:16558;Parent=Msa0125460-mRNA-1
chr1_3 exon 53941603 53941715 53941603 ID=Msa0125460-mRNA-1:exon:16559;Parent=Msa0125460-mRNA-1
chr1_3 exon 53943166 53943316 53943166 ID=Msa0125460-mRNA-1:exon:16560;Parent=Msa0125460-mRNA-1
chr1_3 exon 53946541 53947016 53946541 ID=Msa0125460-mRNA-1:exon:16561;Parent=Msa0125460-mRNA-1
chr1_3 exon 53947113 53947314 53947113 ID=Msa0125460-mRNA-1:exon:16562;Parent=Msa0125460-mRNA-1
chr1_3 exon 53948197 53949962 53948197 ID=Msa0125460-mRNA-1:exon:16563;Parent=Msa0125460-mRNA-1
chr1_3 five_prime_UTR 53935441 53935582 53935441 ID=Msa0125460-mRNA-1:five_prime_utr;Parent=Msa0125460-mRNA-1
chr1_3 five_prime_UTR 53936115 53936117 53936115 ID=Msa0125460-mRNA-1:five_prime_utr;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53936118 53936274 53936118 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53937538 53937649 53937538 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53938432 53938520 53938432 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53938637 53938705 53938637 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53938789 53938921 53938789 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53939087 53939245 53939087 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53940008 53940353 53940008 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53941603 53941715 53941603 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53943166 53943316 53943166 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53946541 53947016 53946541 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53947113 53947314 53947113 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 CDS 53948197 53949585 53948197 ID=Msa0125460-mRNA-1:cds;Parent=Msa0125460-mRNA-1
chr1_3 three_prime_UTR 53949586 53949962 53949586 ID=Msa0125460-mRNA-1:three_prime_utr;Parent=Msa0125460-mRNA-1
Gene Sequence

>Msa0125460

ATGGCTGGAGTGTTGAGTGAGGAGTCTGGAGTGGGAAATTCACGCGGGCAGCATTCTACCGGGGAAGCATTGGCGGAATGGAGGTCTTCCGAGCAGGTGGAGAATGGAATCGCGTCTACTTCTCCCCCTTATTGGGACACTGACGAAGACGACGGTGGACAAAAACCGTCTGAGTTATATGGGAAATATACATGGAAGATAGAAAAGTTTAACCAGATTACCAAAAGGGAACTTCGCAGTAATGCATTTGAGGTTGGAGGCTACAAATGGTATATTTTAATTTATCCACAAGGATGTGATGTTTGCAATCATCTCTCGCTGTTTCTGTGTGTAGCTAACCATGACAAACTTCTTCCAGGATGGAGTCACTTTGCACAGTTTACAATAGCGGTGGTCAATAAAGACCCAAAGAAGTCAAAATATTCTGATACATTGCACCGATTTTGGAAGAAGGAGCATGACTGGGGATGGAAAAAGTTTATGGAGCTGTCAAAGGTTAATGACGGATTTGTTGACTCTTCTGAGAATTTGATAATAAAAGCTCAAGTTCAAGTCATCAGGGAGAAATCAGACAGGCCTTTCCGTTGCCTTGATTGTCATTATAGGAGAGAACTTGTTAGGGTATATTTGACAAATGTAGAACAAATTTGTCGGCGTTTTGTGGAGGAAAGACGAAGCAAGCTTGGGAAGTTGATAGAGGATAAAGCTAGGTGGTCAAGTTTCTTTGCTTTCTGGGGGGAAGTTGATCAAACATCTAGGCGCCGTATGTCTAGGGAGAAGACAGATGTAATTTTGAAAGTAGTAGTGAAACACTTCTTTATTGAGAAAGAAGTCACTTCTACTTTGGTTATGGATTCCTTGTATAGTGGATTGAAGGCTCTTGAGGGCCAGACTAGCAAGAAAGGTTGGGTAAAATTGTTGGATTCTGAAGAAATACCAGCACCTATTGTTCGTGTTGAGAAGGATATGTTTGTACTGGTGGACGATATTTTACCGCTTCTTGAAAGGGCTGCTATAGAACCACTTCCTCCAAAAGATGAAAAGGGTCCCCAAAATCGTACGAAGGATGTAAACTCTGGTGAGGATTTCAATAAAGATTCTATTGAGCGCGATGAAAGGCGTCTCACAGAATTAGGGCGTAGGACTTTGGAAATATTTGTCCTTGCTCATATATTCAGCAACAAAATTGAGGTTGCTTATCAGGAAGCTGTTGCTCTAAAGAGACAAGAAGAACTCATCCGTGAAGAAGAGGCATCATGGCAAGCTGAAGGTGATCAGAAAACAAAACGTGGAGTCAATGAGAGGGAAAAGAAGGCAAAGAAAAAGCAGGCCAAACAAAAGCGGAACAATAAGAAAGTAAAGGACAAAGGGAGGGAGGAGAGGACTACTATGGCTGTGCATGGGACGAACCAAGAAGACAATGGTGTTGATGAGAAAATGGATTCTAATGAGGAAGCTCAAACTCTGTCTGAAAAGCCTGATACTATGGAAGATATTTCTGATGTGTCTGACTCTCTGGATGGAGTTACTGAAATGCTTCATCTGGATTCAGAAGACAGAGATACTAGTCCTGTTAATTGGGATACTGATGCATCAGAAGTTCATCCTCCAACTGAGGCTTGTAACAAAGGCATAGGTGATGTTTCATCCAGACAAAATGGAATAATGTCTGATAAAAGGTGCAGCTCAGCAATAGATGATAGTTCATCAACATGTTCTTCCGATTCTTTGCCATCAGTAGTCATGATTGACTCCTACAAGGGGAACTCTTTTTCAAATTGTAAAGCCCAGAAGTCACCTAGCAGAGGTAAGAACAGAGGCATAGCATCATGTGACACTGGTGGTTGGACAAATAAAATAGATGGTCGGCCATCTGGTGCTGCAGCAGATGCTGGGGTTATTAACAAAGAGTCTGGAAGTGGAAAGGCTGGAAAAAATGAGTCCGAGGGTGCTGTTGTCACATTGAAGGATCGGTTAAAGTGGGCTGAGAAGCATGTTGTCAGAAAGGACGAGGAGGTTGTTTCACTTCAAACGAAACCCAACATCAAAGACGAAGTTGGGATAGAAAGACTTACTGACAACGAATGTCTACATAAAGCTGTGCCATCTTCACCTGTCAGTCCTCCTAGTAGCTCGCCTGGTCAAATGTTAGTAAACAAGACAAGTGCTACTTTAGATCCTTTTCATGTCACTAAAACATCTTCAAATGGCTCCCAACAGACTGATAAAGATCCATCTCCCCCCTTCACCTCTGCCTCACAAGTTACAACTTCGTCCAAAACTGAGATCCAGAAGACTTCAACTGCAAGATTAACTGAAGGATCTGTATCACGAGTGCCTACTATCTCAAGACCTTCAAGTACTCCTTTGGTTTCTGGTCCCAGGCCAACTGCTCCTGTGGTCTCAATGGTTCAAACAGCTCTGCCACTTGCACGCTCAATGAGTGCAGCTGGCCGGTTAGGTCCTGATCCCTCACCCGCCACTCATAGTCATGTTCCTCAATCCTACAGAAATGCTATCATGGGGAACACTGTGACCTCAACTGCTGCCAGTCTGACCCATTCTAGCTCGTCGTGTTCAGGAGTAAACCCGTCCTTTAGCTATTCTCAACCATCTACCTTGGTGTCATCGCCAATCTTTCTATCCCATAGCTCTGATAGAATGGAAACTAATGCTGTCCAGTGTGGTGTTCCCTTTGGCTTGAGAACACAGGATGTTTTACAGAATGGTTCCCAGTGGATTGAAAGTTCTCAAAGAGAATCGGCCAGAAGCATGTATGATCAGCCCGCTGGTCTTAATGATGATCAAAATCATGACTTGTACAGGCCACTACACAGTAGATCTATGGGCAACATGTTAACTGAGTTCCCAGCCTGCACATCCGGGCGTCAGAATCAAGCGTTGGTGGATGAGTTCCCTCACCTTGATATCATAAACGACCTGCTTGATGATGAGCATACTGTTGGAAAGACGGCCAGGGCAAGTTTGGGATTCGAGTGTCTGAGAAATGGGCCGCAATCGCTAAATCGACAATTCAGCTTTCCTGGAGACTTGGATGCAAATGATGACCGCGGATCCTCGACCAGTTCTTGCAGGCTCGAGCGTTCACAAAGTTACCATCATGATCATGGATTCCGAGGAGGGTATAGCTCATCCCATGGGCATTTTGATTCACTTAGGGATTACATCCCGCAAGTTACTAGCATGCCTTATGTCAATGGACAGGTTGATGGATTGATTACAAACCAATGGCAGGTGGCCACGGGTCCTGATCTATTGTATGCAGGCATGAGAAACACAGAGAATGATGGCTACCCATATTATCCAGATTATTACTCAAATATGGCATGTGGTGTCAATGGTTATACTGTATTCAGGCCCTCAAATGGTTCTTAG
Protein sequence

>Msa0125460

MAGVLSEESGVGNSRGQHSTGEALAEWRSSEQVENGIASTSPPYWDTDEDDGGQKPSELYGKYTWKIEKFNQITKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVNDGFVDSSENLIIKAQVQVIREKSDRPFRCLDCHYRRELVRVYLTNVEQICRRFVEERRSKLGKLIEDKARWSSFFAFWGEVDQTSRRRMSREKTDVILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQTSKKGWVKLLDSEEIPAPIVRVEKDMFVLVDDILPLLERAAIEPLPPKDEKGPQNRTKDVNSGEDFNKDSIERDERRLTELGRRTLEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEASWQAEGDQKTKRGVNEREKKAKKKQAKQKRNNKKVKDKGREERTTMAVHGTNQEDNGVDEKMDSNEEAQTLSEKPDTMEDISDVSDSLDGVTEMLHLDSEDRDTSPVNWDTDASEVHPPTEACNKGIGDVSSRQNGIMSDKRCSSAIDDSSSTCSSDSLPSVVMIDSYKGNSFSNCKAQKSPSRGKNRGIASCDTGGWTNKIDGRPSGAAADAGVINKESGSGKAGKNESEGAVVTLKDRLKWAEKHVVRKDEEVVSLQTKPNIKDEVGIERLTDNECLHKAVPSSPVSPPSSSPGQMLVNKTSATLDPFHVTKTSSNGSQQTDKDPSPPFTSASQVTTSSKTEIQKTSTARLTEGSVSRVPTISRPSSTPLVSGPRPTAPVVSMVQTALPLARSMSAAGRLGPDPSPATHSHVPQSYRNAIMGNTVTSTAASLTHSSSSCSGVNPSFSYSQPSTLVSSPIFLSHSSDRMETNAVQCGVPFGLRTQDVLQNGSQWIESSQRESARSMYDQPAGLNDDQNHDLYRPLHSRSMGNMLTEFPACTSGRQNQALVDEFPHLDIINDLLDDEHTVGKTARASLGFECLRNGPQSLNRQFSFPGDLDANDDRGSSTSSCRLERSQSYHHDHGFRGGYSSSHGHFDSLRDYIPQVTSMPYVNGQVDGLITNQWQVATGPDLLYAGMRNTENDGYPYYPDYYSNMACGVNGYTVFRPSNGS*