AlfalfaGEDB | Msa0565390

M. sativa cultivar zhongmu-4 / Msa0565390

KEGG: K14638
GO: -
PFAM: PF06972.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565390	XP_003629905.1	92.841	866	20	5	1	825	1	865	0.0	1597

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565390	G7L824	92.841	866	20	5	1	825	1	865	0.0	1597

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034560	Msa0565390	0.816445	5.508694e-52	-8.615850e-47
Msa0082490	Msa0565390	0.809838	1.552127e-50	-8.615850e-47
Msa0125460	Msa0565390	0.801683	8.019055e-49	-8.615850e-47
Msa0129790	Msa0565390	0.826310	2.910772e-54	-8.615850e-47
Msa0156650	Msa0565390	0.809782	1.596313e-50	-8.615850e-47
Msa0200950	Msa0565390	0.801391	9.204936e-49	-8.615850e-47
Msa0258670	Msa0565390	0.811226	7.782261e-51	-8.615850e-47
Msa0341460	Msa0565390	0.803899	2.797095e-49	-8.615850e-47
Msa0388260	Msa0565390	0.808351	3.232350e-50	-8.615850e-47
Msa0401340	Msa0565390	-0.813232	2.841282e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565390	MtrunA17_Chr8g0380271	92.841	866	20	5	1	825	1	865	0.0	1597
Msa0565390	MtrunA17_Chr3g0096441	25.200	873	470	31	18	825	23	777	1.32e-27	119
Msa0565390	MtrunA17_Chr8g0343521	40.323	124	61	3	4	127	6	116	9.22e-17	85.5
Msa0565390	MtrunA17_Chr5g0429151	50.685	73	33	1	18	87	10	82	1.37e-16	84.7
Msa0565390	MtrunA17_Chr5g0446841	40.000	100	58	2	18	115	16	115	3.64e-13	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0565390	AT1G29350.1	42.982	912	349	39	2	825	3	831	9.26e-167	504
Msa0565390	AT1G29370.1	42.623	915	348	39	2	825	3	831	1.64e-165	501
Msa0565390	AT1G29370.2	40.214	746	291	32	161	825	20	691	2.23e-123	387
Msa0565390	AT4G18150.1	34.375	896	365	39	6	818	3	758	4.11e-93	309
Msa0565390	AT5G46380.1	50.000	96	42	3	15	105	8	102	1.10e-17	88.2
Msa0565390	AT5G46380.2	50.000	96	42	3	15	105	63	157	1.11e-17	88.2
Msa0565390	AT3G13990.1	47.500	80	42	0	5	84	2	81	5.50e-16	83.2
Msa0565390	AT3G13990.2	47.500	80	42	0	5	84	2	81	5.64e-16	83.2
Msa0565390	AT3G07660.1	54.286	70	28	2	18	83	10	79	2.19e-15	81.3

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Find 270 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATGCCACTGTTTC+TGG	0.131454	4_1:+66274412	Msa0565390:CDS
AAAGATAAATACCTCCAAGA+TGG	0.563649	4_1:-66272696	None:intergenic
AAAGCCTGCTGAAATGCCGA+TGG	0.631956	4_1:-66277194	None:intergenic
AAAGGTCCCAGCTGTGAGTA+CGG	0.546189	4_1:-66277122	None:intergenic
AAATTATTAGGGTACCCGTG+CGG	0.792199	4_1:-66277860	None:intergenic
AACAATCCTATGTGGGTTCA+AGG	0.455407	4_1:+66277716	Msa0565390:CDS
AACATCAGCAGCAGAACCCT+AGG	0.541212	4_1:+66277912	Msa0565390:CDS
AACATGGCTTCTTCAATTGG+TGG	0.468306	4_1:+66275658	Msa0565390:CDS
AACATTCAAGTTGTGATGCG+AGG	0.621627	4_1:-66273385	None:intergenic
AACCACATACTTGGCATCTG+AGG	0.563576	4_1:-66274515	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAACGAGAAAAGAAAAAAG+AGG	+	chr4_1:66271636-66271655	Msa0565390:CDS	30.0%
AATTATAATATACCGAGTCG+CGG	+	chr4_1:66272216-66272235	Msa0565390:CDS	30.0%
TCGAACCAATTCAGTAATAA+TGG	+	chr4_1:66272300-66272319	Msa0565390:CDS	30.0%
AATGGTATGTATTTCGAATC+TGG	+	chr4_1:66272318-66272337	Msa0565390:intron	30.0%
AAAGTCATCAAATCGTTTCT+TGG	-	chr4_1:66272497-66272516	None:intergenic	30.0%
AGTCTGATTTCCAAAAACAA+CGG	-	chr4_1:66272560-66272579	None:intergenic	30.0%
AAAGATAAATACCTCCAAGA+TGG	-	chr4_1:66272699-66272718	None:intergenic	30.0%
CTAAAATAACTGTACATGGT+TGG	+	chr4_1:66272734-66272753	Msa0565390:intron	30.0%
TAAATCTAGCCGTTTCTATA+TGG	+	chr4_1:66272828-66272847	Msa0565390:intron	30.0%
AAAATCCGATGCTATTGAAA+AGG	+	chr4_1:66272855-66272874	Msa0565390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	66270900	66278110	66270900	ID=Msa0565390;Name=Msa0565390
chr4_1	mRNA	66270900	66278110	66270900	ID=Msa0565390-mRNA-1;Parent=Msa0565390;Name=Msa0565390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=433\|0.88\|0.8\|1\|1\|1\|10\|101\|825
chr4_1	exon	66270900	66271519	66270900	ID=Msa0565390-mRNA-1:exon:21391;Parent=Msa0565390-mRNA-1
chr4_1	exon	66271614	66271657	66271614	ID=Msa0565390-mRNA-1:exon:21392;Parent=Msa0565390-mRNA-1
chr4_1	exon	66272180	66272321	66272180	ID=Msa0565390-mRNA-1:exon:21393;Parent=Msa0565390-mRNA-1
chr4_1	exon	66272577	66272706	66272577	ID=Msa0565390-mRNA-1:exon:21394;Parent=Msa0565390-mRNA-1
chr4_1	exon	66273191	66273801	66273191	ID=Msa0565390-mRNA-1:exon:21395;Parent=Msa0565390-mRNA-1
chr4_1	exon	66274245	66274527	66274245	ID=Msa0565390-mRNA-1:exon:21396;Parent=Msa0565390-mRNA-1
chr4_1	exon	66274604	66274883	66274604	ID=Msa0565390-mRNA-1:exon:21397;Parent=Msa0565390-mRNA-1
chr4_1	exon	66275544	66275702	66275544	ID=Msa0565390-mRNA-1:exon:21398;Parent=Msa0565390-mRNA-1
chr4_1	exon	66277011	66277352	66277011	ID=Msa0565390-mRNA-1:exon:21399;Parent=Msa0565390-mRNA-1
chr4_1	exon	66277710	66278110	66277710	ID=Msa0565390-mRNA-1:exon:21400;Parent=Msa0565390-mRNA-1
chr4_1	five_prime_UTR	66270900	66271332	66270900	ID=Msa0565390-mRNA-1:five_prime_utr;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66271333	66271519	66271333	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66271614	66271657	66271614	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66272180	66272321	66272180	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66272577	66272706	66272577	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66273191	66273801	66273191	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66274245	66274527	66274245	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66274604	66274883	66274604	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66275544	66275702	66275544	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66277011	66277352	66277011	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	CDS	66277710	66278009	66277710	ID=Msa0565390-mRNA-1:cds;Parent=Msa0565390-mRNA-1
chr4_1	three_prime_UTR	66278010	66278110	66278010	ID=Msa0565390-mRNA-1:three_prime_utr;Parent=Msa0565390-mRNA-1

Gene Sequence

>Msa0565390

ATGAGCGGTAAAGTAGGGGGACAGAAAGGTACATCATCATCGTTGTCGGGTATACCGGCGGCGAGTCGGAAAATGGTACAAAGCTTGAAAGAGATAGTTTCGAATATACCTGATAACGAGATCTATGCCACTCTCAAAGACTGTAACATGGACCCTAACGAAGCTGTTAGTCGTCTTCTTTCTCAAGATCCTTTTCATGAGGTTAAGAGCAAACGAGAAAAGAAAAAAGAGGGTAAGGATACAACAGAACCAAGGTCACGTGGGAGTAATTATAATATACCGAGTCGCGGCGGCGGTGGTGGTAGGACTGGTAGTGACCGATATGCTGGCCGTGGTGGCGGTGGTGCAAGTTCGAACCAATTCAGTAATAATGACTATGGTGTCCAGCAGAGTAAACCCGTGTTTAAGAAAGAAAATGGAACGCCTGCTTATGGAGGCTCCTCCACGTCTTATGCATCTAGTGTGATGGACAATAATGTAAACAGGCAGCCACCATCTTGGAGTGATTCTGTTGGTGTCCATGACGGACTGTCTTCATCATCACATCATGGTGGATTGCAATCTGCATGGTCGGCGAGCCCAGGTCAAGTGTCAATGGCTGACATTGTCAAGATGGGTAGGCCACAGGCCAAGGCATCCGTGCCTAAATCTTCTGTCCACAGTGGGAATCATCAGAATGCTTTTTCAACTCCAGCAGCCTCGCATCACAACTTGAATGTTACTGAAGCAAATAATGAATGGCCTTCTATTGAACCCAATGTTCAACAGAGTGATGAATGGCCTTCTATTGACCCCAATGTTCAACAGAGTGATGAATGGCCTTCTGTTGAGCACCCACCAACAGTTGTTGTTGATGCCCATCCAAATTCTGAGTATTATACAAATACATCTAACTTGGGTGAAGCTAATAGACAACTGCAGAACCACGGAAATGAATTTGTAGCTGAAGACAGTTCTGTTGAGGATGAGAATCCTGTTGATGTTGGATCTGCTTCTATACCTGCTAAAATTATATCTGATGATAATCCAGGAACTGCTTCTGGATATGATGATAATTTGTACAAGGACATAAATTCTTACCAGTCTCATCGACATCCTTTTGATGACAACGAAGCTGAAAATGGTGTTTCATCAGTGGCTACAAACTTAGAGCAGCTAAATTTACACACAGATGAGCAAGGGACAGAACCAGAGGAGGACAATTCTGATGTACTTATTCCAAATCACCTACAACTCCATACTCCAGAGTGTTTTAGTCTGAGCTTTGGAAGTTTTGGACCAAAACAAAATGCCACTGTTTCTGGAGCCGGGACACATTCATCTAGGCCCTTACAAAGTAACTTGGAGGAGACTTCTGGAGCTACTGATGTTTCAGCAATTGGGTCCTCAGATGCCAAAAATCCCGACTATTATGGGGATGAGCATATTGCTACTACCTCAGATGGCAATATATCCCACATAACTGGTGTGGATGCTAGGACTTATGAACATTCTTCCATTTCACAACCAGAGGCTTTAAAGTCTGAACCCTCTGAAACTGCTCAGGAAAATCAATATTCATTTCCTTCATCTTCGCATGAGTTTACATATGAAAATGCCCAACAACCAGAAGTTGCATATCCTCATTCACAAGCAAGCTCACAGATCCAGAACCTATCTCCCTTCTCCAGTGTAATGGCATATACAAATTCTTTGCCCAATGCTCTGTTGGCTTCAACGGTTCAAACACCAAGGGAGGATATCCCATACTCACCCTTCCCTGTTACACAAGCAATGCCTGCAAAATATAGCAACATGGCTTCTTCAATTGGTGGTTCCACGATAAACATGTCAGAGGCTTTAAGGGCAAACAGCATTTCGACGCCTCAAGCTCAACCTAATCAACAATCTTTGCCTGGTGCTGGTGTTGCCACTGGACCTTCACTTCCTCAACACCTTGCTGTGCATCCGTACTCACAGCTGGGACCTTTTGCCAATATGATAAGTTATCCGTTCATGCCTCAGAGCTATACCTACATGCCATCGGCATTTCAGCAGGCTTTTGCTGGAAATAGCACCTACCACCAATCTCTGGCAGCGGTGCTTCCACAATATAAAAATAGCATTTCTGTCAGCAGCTTGCCTCAGTCTGCTGCTATACCATCTGGATATGGTTTGGAAGTTCCACCAGCATTCCTGAATGAGAACAATCCTATGTGGGTTCAAGGGCCTGGTTCTCGAACAATGTCAGTTCCTCCCAGCACGTATTACAGCTTCCAGGGACAGAATCAACAACAACAACCAGGTGCATTTCGACAAAGCCAGCAGCCATCGCAGCAGCATTTTGCACCGCACGGGTACCCTAATAATTTCTACCATTCTCAGAGTGGAATTTCTCTAGAACATCAGCAGCAGAACCCTAGGGATGCTTCCCTTGCCGGCTCCCAAAGCCAACCACCTAAGCAGTCCCAACAACAATTGTGGCAAAACAGCTACTAA

Protein sequence

>Msa0565390

MSGKVGGQKGTSSSLSGIPAASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLLSQDPFHEVKSKREKKKEGKDTTEPRSRGSNYNIPSRGGGGGRTGSDRYAGRGGGGASSNQFSNNDYGVQQSKPVFKKENGTPAYGGSSTSYASSVMDNNVNRQPPSWSDSVGVHDGLSSSSHHGGLQSAWSASPGQVSMADIVKMGRPQAKASVPKSSVHSGNHQNAFSTPAASHHNLNVTEANNEWPSIEPNVQQSDEWPSIDPNVQQSDEWPSVEHPPTVVVDAHPNSEYYTNTSNLGEANRQLQNHGNEFVAEDSSVEDENPVDVGSASIPAKIISDDNPGTASGYDDNLYKDINSYQSHRHPFDDNEAENGVSSVATNLEQLNLHTDEQGTEPEEDNSDVLIPNHLQLHTPECFSLSFGSFGPKQNATVSGAGTHSSRPLQSNLEETSGATDVSAIGSSDAKNPDYYGDEHIATTSDGNISHITGVDARTYEHSSISQPEALKSEPSETAQENQYSFPSSSHEFTYENAQQPEVAYPHSQASSQIQNLSPFSSVMAYTNSLPNALLASTVQTPREDIPYSPFPVTQAMPAKYSNMASSIGGSTINMSEALRANSISTPQAQPNQQSLPGAGVATGPSLPQHLAVHPYSQLGPFANMISYPFMPQSYTYMPSAFQQAFAGNSTYHQSLAAVLPQYKNSISVSSLPQSAAIPSGYGLEVPPAFLNENNPMWVQGPGSRTMSVPPSTYYSFQGQNQQQQPGAFRQSQQPSQQHFAPHGYPNNFYHSQSGISLEHQQQNPRDASLAGSQSQPPKQSQQQLWQNSY*