AlfalfaGEDB | Msa0126510

M. sativa cultivar zhongmu-4 / Msa0126510

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126510	GAU44475.1	92.857	140	10	0	1	140	150	289	1.12e-90	275

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126510	sp\|Q9ZV15\|CDPKK_ARATH	83.571	140	23	0	1	140	417	556	1.22e-77	243

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126510	A0A2Z6P866	92.857	140	10	0	1	140	150	289	5.37e-91	275

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0070970	Msa0126510	0.821634	3.637590e-53	-8.615850e-47
Msa0126510	Msa0473190	0.801629	8.228887e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126510	MtrunA17_Chr1g0176421	98.571	140	2	0	1	140	444	583	3.67e-94	284
Msa0126510	MtrunA17_Chr1g0170281	76.429	140	33	0	1	140	401	540	7.88e-71	222
Msa0126510	MtrunA17_Chr1g0176751	77.857	140	31	0	1	140	407	546	2.01e-70	221
Msa0126510	MtrunA17_Chr1g0200601	72.857	140	38	0	1	140	313	452	2.46e-66	209
Msa0126510	MtrunA17_Chr7g0267751	71.429	140	40	0	1	140	418	557	1.64e-65	209
Msa0126510	MtrunA17_Chr5g0448721	72.143	140	39	0	1	140	379	518	5.03e-65	206
Msa0126510	MtrunA17_Chr8g0385341	70.000	140	42	0	1	140	313	452	3.96e-63	200
Msa0126510	MtrunA17_Chr3g0131181	67.857	140	45	0	1	140	312	451	1.80e-62	199
Msa0126510	MtrunA17_Chr8g0387671	60.993	141	54	1	1	140	349	489	1.35e-54	178
Msa0126510	MtrunA17_Chr5g0397101	60.993	141	54	1	1	140	349	489	8.15e-54	176
Msa0126510	MtrunA17_Chr3g0098951	57.432	148	55	1	1	140	366	513	2.58e-51	170
Msa0126510	MtrunA17_Chr5g0444171	56.738	141	60	1	1	140	375	515	5.78e-50	167
Msa0126510	MtrunA17_Chr1g0157131	57.447	141	59	1	1	140	357	497	1.07e-48	163
Msa0126510	MtrunA17_Chr4g0074811	55.319	141	62	1	1	140	374	514	1.56e-48	163
Msa0126510	MtrunA17_Chr0c02g0489761	56.028	141	61	1	1	140	361	501	2.07e-48	162
Msa0126510	MtrunA17_Chr5g0441691	53.901	141	64	1	1	140	351	491	8.98e-48	160
Msa0126510	MtrunA17_Chr4g0059951	50.704	142	68	2	1	140	356	497	3.81e-39	138
Msa0126510	MtrunA17_Chr7g0242561	47.887	142	72	1	1	140	339	480	1.08e-36	131
Msa0126510	MtrunA17_Chr7g0257751	50.420	119	59	0	1	119	341	459	2.73e-35	127
Msa0126510	MtrunA17_Chr1g0173541	49.580	119	60	0	1	119	335	453	5.56e-35	126
Msa0126510	MtrunA17_Chr4g0033371	43.262	141	79	1	1	140	355	495	9.92e-35	125
Msa0126510	MtrunA17_Chr4g0074791	44.681	141	66	3	1	140	379	508	6.33e-34	123
Msa0126510	MtrunA17_Chr5g0405421	36.301	146	82	3	2	140	385	526	1.94e-21	89.0
Msa0126510	MtrunA17_Chr5g0440931	35.606	132	82	2	12	140	1	132	1.47e-20	81.6
Msa0126510	MtrunA17_Chr7g0254731	34.848	132	83	2	12	140	1	132	2.34e-20	81.3
Msa0126510	MtrunA17_Chr3g0093271	34.307	137	87	2	7	140	47	183	4.90e-20	81.6
Msa0126510	MtrunA17_Chr6g0460211	34.848	132	83	2	12	140	1	132	5.02e-20	80.5
Msa0126510	MtrunA17_Chr1g0188171	35.606	132	82	2	12	140	1	132	1.45e-18	76.6
Msa0126510	MtrunA17_Chr1g0166281	34.848	132	83	2	12	140	1	132	1.38e-17	73.9
Msa0126510	MtrunA17_Chr8g0366401	33.588	131	81	2	16	140	10	140	3.76e-17	73.2
Msa0126510	MtrunA17_Chr4g0033601	33.019	106	66	2	24	126	6	109	1.70e-14	66.2
Msa0126510	MtrunA17_Chr1g0185001	30.370	135	84	3	12	140	1	131	2.17e-14	65.9
Msa0126510	MtrunA17_Chr4g0062221	31.148	122	79	3	24	140	12	133	3.89e-13	62.8
Msa0126510	MtrunA17_Chr2g0329371	33.019	106	68	1	24	126	65	170	5.51e-13	63.2
Msa0126510	MtrunA17_Chr7g0274101	32.576	132	86	2	12	140	1	132	1.08e-12	61.2
Msa0126510	MtrunA17_Chr5g0441781	43.860	57	31	1	85	140	1	57	1.78e-12	59.3
Msa0126510	MtrunA17_Chr7g0245231	28.682	129	89	2	15	140	22	150	3.81e-12	60.5
Msa0126510	MtrunA17_Chr8g0392951	33.981	103	68	0	24	126	25	127	8.03e-12	59.3
Msa0126510	MtrunA17_Chr5g0402551	31.667	120	77	2	2	116	421	540	1.03e-11	61.2
Msa0126510	MtrunA17_Chr5g0398751	27.692	130	89	3	12	138	1	128	3.55e-11	57.4
Msa0126510	MtrunA17_Chr4g0045261	27.500	120	82	2	2	116	424	543	6.90e-11	58.9
Msa0126510	MtrunA17_Chr6g0450921	27.907	129	90	2	15	140	21	149	7.82e-11	57.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126510	AT2G38910.1	83.571	140	23	0	1	140	417	556	1.24e-78	243
Msa0126510	AT3G10660.2	73.571	140	37	0	1	140	469	608	1.80e-66	213
Msa0126510	AT3G10660.1	73.571	140	37	0	1	140	469	608	1.80e-66	213
Msa0126510	AT5G04870.1	74.286	140	36	0	1	140	433	572	2.38e-66	211
Msa0126510	AT4G38230.1	70.000	140	42	0	1	140	163	302	3.42e-66	204
Msa0126510	AT4G09570.1	72.857	140	38	0	1	140	308	447	1.09e-65	207
Msa0126510	AT1G35670.1	72.857	140	38	0	1	140	309	448	3.27e-65	206
Msa0126510	AT4G38230.4	70.000	140	42	0	1	140	307	446	1.35e-64	204
Msa0126510	AT4G38230.3	70.000	140	42	0	1	140	307	446	1.35e-64	204
Msa0126510	AT4G38230.2	70.000	140	42	0	1	140	337	476	2.13e-64	204
Msa0126510	AT2G17290.1	69.286	140	43	0	1	140	368	507	8.20e-63	201
Msa0126510	AT2G17290.2	69.286	140	43	0	1	140	368	507	8.20e-63	201
Msa0126510	AT4G35310.2	69.286	140	43	0	1	140	380	519	1.85e-62	200
Msa0126510	AT4G35310.1	69.286	140	43	0	1	140	380	519	1.85e-62	200
Msa0126510	AT5G23580.1	66.429	140	47	0	1	140	305	444	7.65e-60	192
Msa0126510	AT1G76040.1	58.865	141	57	1	1	140	156	296	2.57e-53	171
Msa0126510	AT1G76040.4	58.865	141	57	1	1	140	156	296	2.57e-53	171
Msa0126510	AT5G19360.1	59.574	141	56	1	1	140	351	491	2.13e-52	173
Msa0126510	AT5G12180.1	58.865	141	57	1	1	140	356	496	1.58e-51	171
Msa0126510	AT1G76040.2	58.865	141	57	1	1	140	394	534	2.26e-51	171
Msa0126510	AT4G23650.1	57.447	141	59	1	1	140	361	501	8.72e-51	169
Msa0126510	AT4G04720.2	56.738	141	60	1	1	140	362	502	1.03e-48	164
Msa0126510	AT4G04720.1	56.738	141	60	1	1	140	362	502	1.03e-48	164
Msa0126510	AT4G21940.1	56.738	141	60	1	1	140	384	524	1.89e-48	163
Msa0126510	AT4G21940.2	56.738	141	60	1	1	140	384	524	2.02e-48	163
Msa0126510	AT4G04710.3	56.028	141	61	1	1	140	301	441	2.97e-47	159
Msa0126510	AT4G04710.2	56.028	141	61	1	1	140	315	455	4.80e-47	158
Msa0126510	AT4G04710.1	56.028	141	61	1	1	140	328	468	5.67e-47	158
Msa0126510	AT1G50700.1	54.610	141	63	1	1	140	356	496	8.01e-46	155
Msa0126510	AT4G04695.1	56.028	141	61	1	1	140	314	454	8.94e-46	155
Msa0126510	AT4G04710.4	55.245	143	61	2	1	140	328	470	4.66e-45	153
Msa0126510	AT3G20410.2	53.901	141	64	1	1	140	374	514	4.75e-45	154
Msa0126510	AT3G20410.1	53.901	141	64	1	1	140	374	514	4.75e-45	154
Msa0126510	AT1G76040.3	63.964	111	40	0	1	111	394	504	3.85e-43	148
Msa0126510	AT1G61950.1	52.482	141	66	1	1	140	382	522	5.52e-43	149
Msa0126510	AT4G04700.1	52.857	140	65	1	2	140	315	454	4.77e-41	142
Msa0126510	AT4G21940.3	62.385	109	41	0	1	109	384	492	9.89e-41	142
Msa0126510	AT1G50700.2	46.108	167	63	2	1	140	356	522	2.12e-40	142
Msa0126510	AT4G04740.4	48.227	141	72	1	1	140	351	491	1.28e-39	139
Msa0126510	AT4G04740.6	48.227	141	72	1	1	140	351	491	1.28e-39	139
Msa0126510	AT4G04740.5	48.227	141	72	1	1	140	351	491	1.28e-39	139
Msa0126510	AT4G04740.3	48.227	141	72	1	1	140	351	491	1.28e-39	139
Msa0126510	AT4G04740.1	48.227	141	72	1	1	140	351	491	1.28e-39	139
Msa0126510	AT4G04740.7	48.227	141	72	1	1	140	351	491	1.28e-39	139
Msa0126510	AT4G04740.2	48.227	141	72	1	1	140	351	491	1.86e-39	139
Msa0126510	AT1G74740.1	48.592	142	71	2	1	140	342	483	8.94e-39	137
Msa0126510	AT5G12480.2	53.719	121	56	0	1	121	248	368	1.33e-38	135
Msa0126510	AT5G12480.1	53.719	121	56	0	1	121	342	462	4.85e-38	135
Msa0126510	AT3G51850.2	49.296	142	70	1	1	140	337	478	1.51e-37	133
Msa0126510	AT1G18890.1	49.296	142	70	2	1	140	346	487	1.81e-37	134
Msa0126510	AT1G50700.3	58.716	109	45	0	1	109	356	464	1.83e-37	133
Msa0126510	AT3G51850.1	49.296	142	70	1	1	140	337	478	9.73e-37	131
Msa0126510	AT5G19450.2	52.459	122	57	1	1	121	340	461	3.79e-36	130
Msa0126510	AT5G19450.1	52.459	122	57	1	1	121	340	461	3.79e-36	130
Msa0126510	AT3G57530.1	43.972	141	78	1	1	140	346	486	2.83e-33	122
Msa0126510	AT2G31500.1	43.846	130	68	1	1	130	349	473	3.15e-32	119
Msa0126510	AT2G41860.1	49.580	119	60	0	1	119	337	455	2.84e-31	116
Msa0126510	AT2G41860.2	49.580	119	60	0	1	119	337	455	2.96e-31	116
Msa0126510	AT2G17890.1	38.356	146	79	4	2	140	394	535	1.46e-24	98.2
Msa0126510	AT2G35890.2	55.319	94	41	1	2	94	416	509	4.45e-24	96.7
Msa0126510	AT2G35890.1	55.319	94	41	1	2	94	416	509	4.45e-24	96.7
Msa0126510	AT4G36070.2	36.735	147	82	4	1	140	356	498	1.35e-22	92.8
Msa0126510	AT4G36070.1	36.735	147	82	4	1	140	356	498	1.41e-22	92.4
Msa0126510	AT5G66210.1	36.986	146	83	3	2	140	348	491	5.41e-22	90.9
Msa0126510	AT5G66210.2	36.986	146	83	3	2	140	348	491	5.41e-22	90.9
Msa0126510	AT5G66210.3	38.400	125	70	2	2	119	348	472	4.24e-21	88.2
Msa0126510	AT5G66210.5	38.211	123	69	2	2	117	348	470	8.54e-21	87.4
Msa0126510	AT5G21274.1	34.848	132	83	2	12	140	1	132	6.49e-20	80.5
Msa0126510	AT3G43810.1	34.848	132	83	2	12	140	1	132	6.93e-20	80.5
Msa0126510	AT1G66410.1	34.848	132	83	2	12	140	1	132	1.17e-19	79.7
Msa0126510	AT5G37780.1	34.848	132	83	2	12	140	1	132	1.17e-19	79.7
Msa0126510	AT3G56800.1	34.091	132	84	2	12	140	1	132	3.33e-19	78.6
Msa0126510	AT2G41110.1	34.091	132	84	2	12	140	1	132	3.33e-19	78.6
Msa0126510	AT2G27030.1	34.091	132	84	2	12	140	1	132	3.33e-19	78.6
Msa0126510	AT3G43810.2	34.848	132	83	2	12	140	1	132	3.87e-19	80.1
Msa0126510	AT2G27030.3	34.091	132	84	2	12	140	1	132	5.46e-19	79.0
Msa0126510	AT2G41110.2	31.250	144	84	3	12	140	1	144	5.13e-16	70.5
Msa0126510	AT4G14640.1	34.375	128	81	2	16	140	6	133	5.76e-16	70.5
Msa0126510	AT5G37780.2	31.293	147	83	3	12	140	1	147	9.60e-16	70.1
Msa0126510	AT3G22930.1	34.375	128	81	2	16	140	28	155	1.55e-15	69.7
Msa0126510	AT3G57530.2	47.143	70	37	0	1	70	346	415	3.71e-15	71.2
Msa0126510	AT3G59440.1	34.259	108	71	0	19	126	47	154	4.28e-15	68.9
Msa0126510	AT3G03000.1	33.824	136	84	3	10	140	7	141	8.10e-15	67.8
Msa0126510	AT1G66410.2	32.394	142	83	3	12	140	1	142	9.66e-15	67.4
Msa0126510	AT5G37780.3	29.114	158	83	3	12	140	1	158	4.12e-14	65.9
Msa0126510	AT3G10190.1	30.952	126	86	1	11	135	58	183	5.13e-14	66.2
Msa0126510	AT3G51850.3	44.156	77	43	0	1	77	337	413	5.85e-14	67.8
Msa0126510	AT3G50360.1	31.667	120	79	2	24	140	28	147	1.13e-13	64.7
Msa0126510	AT1G32250.1	30.435	138	87	3	12	140	5	142	1.83e-13	63.9
Msa0126510	AT1G05990.1	34.146	123	75	3	24	140	6	128	2.09e-13	63.5
Msa0126510	AT5G37780.4	34.259	108	68	2	36	140	12	119	3.25e-13	62.8
Msa0126510	AT2G41100.7	29.801	151	86	3	10	140	53	203	3.42e-13	65.1
Msa0126510	AT2G41100.6	29.801	151	86	3	10	140	53	203	3.42e-13	65.1
Msa0126510	AT2G41100.3	29.801	151	86	3	10	140	53	203	3.42e-13	65.1
Msa0126510	AT2G41100.4	29.801	151	86	3	10	140	88	238	4.81e-13	65.1
Msa0126510	AT2G41100.4	29.054	148	86	3	12	140	1	148	1.06e-11	61.2
Msa0126510	AT2G41100.1	29.801	151	86	3	10	140	88	238	4.81e-13	65.1
Msa0126510	AT2G41100.1	29.054	148	86	3	12	140	1	148	1.06e-11	61.2
Msa0126510	AT2G43290.1	33.945	109	66	1	24	126	66	174	4.83e-13	63.9
Msa0126510	AT4G37010.1	31.667	120	79	2	24	140	28	147	4.91e-13	63.2
Msa0126510	AT4G03290.1	32.710	107	68	1	24	126	6	112	5.34e-13	62.8
Msa0126510	AT4G37010.2	31.667	120	79	2	24	140	32	151	5.57e-13	62.8
Msa0126510	AT4G14640.3	33.981	103	67	1	16	117	6	108	1.09e-12	60.8
Msa0126510	AT3G43810.4	34.375	96	60	2	48	140	1	96	1.00e-11	58.2
Msa0126510	AT3G43810.3	34.375	96	60	2	48	140	1	96	1.00e-11	58.2
Msa0126510	AT3G50530.1	29.167	120	80	2	2	116	435	554	1.32e-11	61.2
Msa0126510	AT3G50530.2	29.167	120	80	2	2	116	466	585	1.33e-11	61.2
Msa0126510	AT4G14640.2	34.579	107	67	2	37	140	9	115	1.35e-11	58.5
Msa0126510	AT3G22930.2	33.333	102	67	1	16	116	28	129	1.35e-11	58.5
Msa0126510	AT3G51920.1	28.788	132	91	2	12	140	1	132	1.73e-11	58.5
Msa0126510	AT2G41090.1	29.008	131	89	2	12	140	1	129	3.59e-11	58.5
Msa0126510	AT1G66410.4	33.333	96	61	2	48	140	1	96	4.44e-11	56.6
Msa0126510	AT1G66410.3	33.333	96	61	2	48	140	1	96	4.44e-11	56.6
Msa0126510	AT1G18530.1	30.469	128	84	3	18	140	2	129	7.15e-11	57.0

Find 36 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCTTTGTCAAAGTAGTTAA+AGG	0.225553	1_3:-55605101	Msa0126500:intron
TTGTAGGCCAAACTGGTTAC+AGG	0.264534	1_3:-55605161	Msa0126500:intron
GCGGAATCAAGCGGTTTATC+AGG	0.356034	1_3:-55604333	Msa0126500:CDS
AAGAGTGGGTTCCGTTCTTA+AGG	0.360602	1_3:+55604778	Msa0126510:CDS
CATCTAGATGATCATCTTGT+AGG	0.364118	1_3:-55605177	Msa0126500:intron
TTTAACTACTTTGACAAAGA+TGG	0.384347	1_3:+55605103	Msa0126510:CDS
TATGAATTCACCGTAGTCTA+TGG	0.385309	1_3:-55605026	Msa0126500:intron
TTAAGGATTCTGAAATCAAC+TGG	0.396005	1_3:+55604795	Msa0126510:CDS
GATCATCTTGTAGGCCAAAC+TGG	0.400649	1_3:-55605168	Msa0126500:intron
CAAACTGGTTACAGGCTTGT+TGG	0.417427	1_3:-55605153	Msa0126500:intron
CAACAAGCCTGTAACCAGTT+TGG	0.430633	1_3:+55605154	Msa0126510:CDS
GATCATGTGCAGGTCATCCT+TGG	0.432927	1_3:+55604289	None:intergenic
CATCCTTGGGTGCAGGTTGG+AGG	0.437720	1_3:+55604303	Msa0126510:five_prime_UTR
TTAACTACTTTGACAAAGAT+GGG	0.451171	1_3:+55605104	Msa0126510:CDS
TCATCTAAACAAGGTTCAAA+AGG	0.474233	1_3:+55605060	Msa0126510:CDS
TTGTCCGAGGAGGAAATTGC+AGG	0.478454	1_3:+55604677	Msa0126510:CDS
AAGTCCTGCAATTTCCTCCT+CGG	0.494533	1_3:-55604681	Msa0126500:intron
ATCATGTGCAGGTCATCCTT+GGG	0.505732	1_3:+55604290	None:intergenic
TGCAGGTCATCCTTGGGTGC+AGG	0.514508	1_3:+55604296	None:intergenic
CAGGCAGACGTTGATAATAG+TGG	0.517313	1_3:+55605001	Msa0126510:intron
GGTCATCCTTGGGTGCAGGT+TGG	0.527086	1_3:+55604300	None:intergenic
ACACCTCCAACCTGCACCCA+AGG	0.567162	1_3:-55604306	Msa0126500:CDS
TACTTTGACAAAGATGGGAG+TGG	0.576026	1_3:+55605109	Msa0126510:CDS
TGCTGAAAATTTGTCCGAGG+AGG	0.576827	1_3:+55604667	Msa0126510:CDS
GATTTCAGAATCCTTAAGAA+CGG	0.582268	1_3:-55604789	Msa0126500:intron
AACCTTGTTTAGATGAAGCA+TGG	0.582578	1_3:-55605053	Msa0126500:intron
GATAAGACTGCGGAATCAAG+CGG	0.608524	1_3:-55604342	Msa0126500:CDS
TCTAAACAAGGTTCAAAAGG+AGG	0.612349	1_3:+55605063	Msa0126510:CDS
AATAGTGGTACCATAGACTA+CGG	0.614703	1_3:+55605016	Msa0126510:CDS
AATCAACTGGTTAATGCAAG+CGG	0.643760	1_3:+55604808	Msa0126510:CDS
AATTGCTGAAAATTTGTCCG+AGG	0.661348	1_3:+55604664	Msa0126510:CDS
GTACTGGATACTCACTCGAA+TGG	0.664998	1_3:-55604409	Msa0126500:intron
AGCCATGCTTCATCTAAACA+AGG	0.679512	1_3:+55605051	Msa0126510:CDS
ATGATAGACACAGATAATAG+CGG	0.693651	1_3:+55604719	Msa0126510:CDS
TGGGAGTGGATACATTACAA+AGG	0.697675	1_3:+55605123	Msa0126510:CDS
CTTCAAACGAGATAAGACTG+CGG	0.772215	1_3:-55604352	Msa0126500:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCTAATCTTAAAATACTGAT+GGG	-	chr1_3:55604434-55604453	Msa0126500:intron	20.0%
!!	TTCTAATCTTAAAATACTGA+TGG	-	chr1_3:55604435-55604454	Msa0126500:intron	20.0%
!!	AAACAATCTAAGAATTTACA+AGG	+	chr1_3:55604473-55604492	Msa0126510:intron	20.0%
!!	TCTAATCTTAAAATACTGAT+GGG	-	chr1_3:55604434-55604453	Msa0126500:intron	20.0%
!!	TTCTAATCTTAAAATACTGA+TGG	-	chr1_3:55604435-55604454	Msa0126500:intron	20.0%
!!	AAACAATCTAAGAATTTACA+AGG	+	chr1_3:55604473-55604492	Msa0126510:intron	20.0%
!!!	TAGAAGTATTGCATATTACA+TGG	+	chr1_3:55604450-55604469	Msa0126510:intron	25.0%
!!	AATATTGAACATTTTGCCAA+TGG	+	chr1_3:55604569-55604588	Msa0126510:intron	25.0%
!!	ATATTGAACATTTTGCCAAT+GGG	+	chr1_3:55604570-55604589	Msa0126510:intron	25.0%
!	AACACAACATAAAAAGTCTA+GGG	-	chr1_3:55604918-55604937	Msa0126500:intron	25.0%
!!!	TCCTTTCTTCTTTAAAATTC+AGG	+	chr1_3:55604982-55605001	Msa0126510:intron	25.0%
!	ATCTTTGTCAAAGTAGTTAA+AGG	-	chr1_3:55605104-55605123	Msa0126500:intron	25.0%
!	TTTAACTACTTTGACAAAGA+TGG	+	chr1_3:55605103-55605122	Msa0126510:CDS	25.0%
!	TTAACTACTTTGACAAAGAT+GGG	+	chr1_3:55605104-55605123	Msa0126510:CDS	25.0%
!!!	TAGAAGTATTGCATATTACA+TGG	+	chr1_3:55604450-55604469	Msa0126510:intron	25.0%
!!	AATATTGAACATTTTGCCAA+TGG	+	chr1_3:55604569-55604588	Msa0126510:intron	25.0%
!!	ATATTGAACATTTTGCCAAT+GGG	+	chr1_3:55604570-55604589	Msa0126510:intron	25.0%
!	AACACAACATAAAAAGTCTA+GGG	-	chr1_3:55604918-55604937	Msa0126500:intron	25.0%
!!!	TCCTTTCTTCTTTAAAATTC+AGG	+	chr1_3:55604982-55605001	Msa0126510:intron	25.0%
!	ATCTTTGTCAAAGTAGTTAA+AGG	-	chr1_3:55605104-55605123	Msa0126500:intron	25.0%
!	TTTAACTACTTTGACAAAGA+TGG	+	chr1_3:55605103-55605122	Msa0126510:CDS	25.0%
!	TTAACTACTTTGACAAAGAT+GGG	+	chr1_3:55605104-55605123	Msa0126510:CDS	25.0%
	ACTTTCTGTATTATATCCCT+TGG	+	chr1_3:55604636-55604655	Msa0126510:intron	30.0%
	ATGATAGACACAGATAATAG+CGG	+	chr1_3:55604719-55604738	Msa0126510:CDS	30.0%
	ACTCTTGAAGAACTGAAAAA+TGG	+	chr1_3:55604749-55604768	Msa0126510:CDS	30.0%
	AAAAATGGCTTAGAAAGAGT+GGG	+	chr1_3:55604764-55604783	Msa0126510:CDS	30.0%
	GATTTCAGAATCCTTAAGAA+CGG	-	chr1_3:55604792-55604811	Msa0126500:intron	30.0%
!!	TTAAGGATTCTGAAATCAAC+TGG	+	chr1_3:55604795-55604814	Msa0126510:CDS	30.0%
	TGAACATAGAACTGACAATT+TGG	-	chr1_3:55604852-55604871	Msa0126500:intron	30.0%
	GAACACAACATAAAAAGTCT+AGG	-	chr1_3:55604919-55604938	Msa0126500:intron	30.0%
!!	GCCTGAATTTTAAAGAAGAA+AGG	-	chr1_3:55604986-55605005	Msa0126500:intron	30.0%
	TCATCTAAACAAGGTTCAAA+AGG	+	chr1_3:55605060-55605079	Msa0126510:CDS	30.0%
	ACTTTCTGTATTATATCCCT+TGG	+	chr1_3:55604636-55604655	Msa0126510:intron	30.0%
	ATGATAGACACAGATAATAG+CGG	+	chr1_3:55604719-55604738	Msa0126510:CDS	30.0%
	ACTCTTGAAGAACTGAAAAA+TGG	+	chr1_3:55604749-55604768	Msa0126510:CDS	30.0%
	AAAAATGGCTTAGAAAGAGT+GGG	+	chr1_3:55604764-55604783	Msa0126510:CDS	30.0%
	GATTTCAGAATCCTTAAGAA+CGG	-	chr1_3:55604792-55604811	Msa0126500:intron	30.0%
!!	TTAAGGATTCTGAAATCAAC+TGG	+	chr1_3:55604795-55604814	Msa0126510:CDS	30.0%
	TGAACATAGAACTGACAATT+TGG	-	chr1_3:55604852-55604871	Msa0126500:intron	30.0%
	GAACACAACATAAAAAGTCT+AGG	-	chr1_3:55604919-55604938	Msa0126500:intron	30.0%
!!	GCCTGAATTTTAAAGAAGAA+AGG	-	chr1_3:55604986-55605005	Msa0126500:intron	30.0%
	TCATCTAAACAAGGTTCAAA+AGG	+	chr1_3:55605060-55605079	Msa0126510:CDS	30.0%
!	CTTAAAATACTGATGGGTAC+TGG	-	chr1_3:55604428-55604447	Msa0126500:intron	35.0%
	AATTGCTGAAAATTTGTCCG+AGG	+	chr1_3:55604664-55604683	Msa0126510:CDS	35.0%
	GAAAAATGGCTTAGAAAGAG+TGG	+	chr1_3:55604763-55604782	Msa0126510:CDS	35.0%
	AATCAACTGGTTAATGCAAG+CGG	+	chr1_3:55604808-55604827	Msa0126510:CDS	35.0%
	AATAGTGGTACCATAGACTA+CGG	+	chr1_3:55605016-55605035	Msa0126510:CDS	35.0%
	TATGAATTCACCGTAGTCTA+TGG	-	chr1_3:55605029-55605048	Msa0126500:intron	35.0%
!	AACCTTGTTTAGATGAAGCA+TGG	-	chr1_3:55605056-55605075	Msa0126500:intron	35.0%
	TCTAAACAAGGTTCAAAAGG+AGG	+	chr1_3:55605063-55605082	Msa0126510:CDS	35.0%
	CATCTAGATGATCATCTTGT+AGG	-	chr1_3:55605180-55605199	Msa0126500:intron	35.0%
!	CTTAAAATACTGATGGGTAC+TGG	-	chr1_3:55604428-55604447	Msa0126500:intron	35.0%
	AATTGCTGAAAATTTGTCCG+AGG	+	chr1_3:55604664-55604683	Msa0126510:CDS	35.0%
	GAAAAATGGCTTAGAAAGAG+TGG	+	chr1_3:55604763-55604782	Msa0126510:CDS	35.0%
	AATCAACTGGTTAATGCAAG+CGG	+	chr1_3:55604808-55604827	Msa0126510:CDS	35.0%
	AATAGTGGTACCATAGACTA+CGG	+	chr1_3:55605016-55605035	Msa0126510:CDS	35.0%
	TATGAATTCACCGTAGTCTA+TGG	-	chr1_3:55605029-55605048	Msa0126500:intron	35.0%
!	AACCTTGTTTAGATGAAGCA+TGG	-	chr1_3:55605056-55605075	Msa0126500:intron	35.0%
	TCTAAACAAGGTTCAAAAGG+AGG	+	chr1_3:55605063-55605082	Msa0126510:CDS	35.0%
	CATCTAGATGATCATCTTGT+AGG	-	chr1_3:55605180-55605199	Msa0126500:intron	35.0%
	CTTCAAACGAGATAAGACTG+CGG	-	chr1_3:55604355-55604374	Msa0126500:CDS	40.0%
	ACATAGCAATTGCTTCCCAT+TGG	-	chr1_3:55604588-55604607	Msa0126500:intron	40.0%
	TCTGTATTATATCCCTTGGC+AGG	+	chr1_3:55604640-55604659	Msa0126510:intron	40.0%
	TTTCAGCAATTACCTGCCAA+GGG	-	chr1_3:55604655-55604674	Msa0126500:intron	40.0%
!	TTTTCAGCAATTACCTGCCA+AGG	-	chr1_3:55604656-55604675	Msa0126500:intron	40.0%
	GAACTGACAATTTGGATAGC+AGG	-	chr1_3:55604844-55604863	Msa0126500:intron	40.0%
	AGCCATGCTTCATCTAAACA+AGG	+	chr1_3:55605051-55605070	Msa0126510:CDS	40.0%
	TACTTTGACAAAGATGGGAG+TGG	+	chr1_3:55605109-55605128	Msa0126510:CDS	40.0%
	TGGGAGTGGATACATTACAA+AGG	+	chr1_3:55605123-55605142	Msa0126510:CDS	40.0%
	CTTCAAACGAGATAAGACTG+CGG	-	chr1_3:55604355-55604374	Msa0126500:CDS	40.0%
	ACATAGCAATTGCTTCCCAT+TGG	-	chr1_3:55604588-55604607	Msa0126500:intron	40.0%
	TCTGTATTATATCCCTTGGC+AGG	+	chr1_3:55604640-55604659	Msa0126510:intron	40.0%
	TTTCAGCAATTACCTGCCAA+GGG	-	chr1_3:55604655-55604674	Msa0126500:intron	40.0%
!	TTTTCAGCAATTACCTGCCA+AGG	-	chr1_3:55604656-55604675	Msa0126500:intron	40.0%
	GAACTGACAATTTGGATAGC+AGG	-	chr1_3:55604844-55604863	Msa0126500:intron	40.0%
	AGCCATGCTTCATCTAAACA+AGG	+	chr1_3:55605051-55605070	Msa0126510:CDS	40.0%
	TACTTTGACAAAGATGGGAG+TGG	+	chr1_3:55605109-55605128	Msa0126510:CDS	40.0%
	TGGGAGTGGATACATTACAA+AGG	+	chr1_3:55605123-55605142	Msa0126510:CDS	40.0%
	GATAAGACTGCGGAATCAAG+CGG	-	chr1_3:55604345-55604364	Msa0126500:CDS	45.0%
	GTACTGGATACTCACTCGAA+TGG	-	chr1_3:55604412-55604431	Msa0126500:intron	45.0%
	TGCTGAAAATTTGTCCGAGG+AGG	+	chr1_3:55604667-55604686	Msa0126510:CDS	45.0%
	AAGTCCTGCAATTTCCTCCT+CGG	-	chr1_3:55604684-55604703	Msa0126500:intron	45.0%
!	AAGAGTGGGTTCCGTTCTTA+AGG	+	chr1_3:55604778-55604797	Msa0126510:CDS	45.0%
!!	CAGGCAGACGTTGATAATAG+TGG	+	chr1_3:55605001-55605020	Msa0126510:intron	45.0%
	CAAACTGGTTACAGGCTTGT+TGG	-	chr1_3:55605156-55605175	Msa0126500:intron	45.0%
	CAACAAGCCTGTAACCAGTT+TGG	+	chr1_3:55605154-55605173	Msa0126510:CDS	45.0%
	TTGTAGGCCAAACTGGTTAC+AGG	-	chr1_3:55605164-55605183	Msa0126500:intron	45.0%
	GATCATCTTGTAGGCCAAAC+TGG	-	chr1_3:55605171-55605190	Msa0126500:intron	45.0%
	GATAAGACTGCGGAATCAAG+CGG	-	chr1_3:55604345-55604364	Msa0126500:CDS	45.0%
	GTACTGGATACTCACTCGAA+TGG	-	chr1_3:55604412-55604431	Msa0126500:intron	45.0%
	TGCTGAAAATTTGTCCGAGG+AGG	+	chr1_3:55604667-55604686	Msa0126510:CDS	45.0%
	AAGTCCTGCAATTTCCTCCT+CGG	-	chr1_3:55604684-55604703	Msa0126500:intron	45.0%
!	AAGAGTGGGTTCCGTTCTTA+AGG	+	chr1_3:55604778-55604797	Msa0126510:CDS	45.0%
!!	CAGGCAGACGTTGATAATAG+TGG	+	chr1_3:55605001-55605020	Msa0126510:intron	45.0%
	CAAACTGGTTACAGGCTTGT+TGG	-	chr1_3:55605156-55605175	Msa0126500:intron	45.0%
	CAACAAGCCTGTAACCAGTT+TGG	+	chr1_3:55605154-55605173	Msa0126510:CDS	45.0%
	TTGTAGGCCAAACTGGTTAC+AGG	-	chr1_3:55605164-55605183	Msa0126500:intron	45.0%
	GATCATCTTGTAGGCCAAAC+TGG	-	chr1_3:55605171-55605190	Msa0126500:intron	45.0%
	GCGGAATCAAGCGGTTTATC+AGG	-	chr1_3:55604336-55604355	Msa0126500:CDS	50.0%
	TTGTCCGAGGAGGAAATTGC+AGG	+	chr1_3:55604677-55604696	Msa0126510:CDS	50.0%
	GCGGAATCAAGCGGTTTATC+AGG	-	chr1_3:55604336-55604355	Msa0126500:CDS	50.0%
	TTGTCCGAGGAGGAAATTGC+AGG	+	chr1_3:55604677-55604696	Msa0126510:CDS	50.0%
!	CATCCTTGGGTGCAGGTTGG+AGG	+	chr1_3:55604303-55604322	Msa0126510:five_prime_UTR	60.0%
	ACACCTCCAACCTGCACCCA+AGG	-	chr1_3:55604309-55604328	Msa0126500:CDS	60.0%
!	CATCCTTGGGTGCAGGTTGG+AGG	+	chr1_3:55604303-55604322	Msa0126510:five_prime_UTR	60.0%
	ACACCTCCAACCTGCACCCA+AGG	-	chr1_3:55604309-55604328	Msa0126500:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	55604301	55605225	55604301	ID=Msa0126510;Name=Msa0126510
chr1_3	mRNA	55604301	55605225	55604301	ID=Msa0126510-mRNA-1;Parent=Msa0126510;Name=Msa0126510-mRNA-1;_AED=0.20;_eAED=0.26;_QI=86\|0.5\|0.66\|1\|1\|0.66\|3\|0\|140
chr1_3	exon	55604301	55604416	55604301	ID=Msa0126510-mRNA-1:exon:17358;Parent=Msa0126510-mRNA-1
chr1_3	exon	55604662	55604829	55604662	ID=Msa0126510-mRNA-1:exon:17359;Parent=Msa0126510-mRNA-1
chr1_3	exon	55605004	55605225	55605004	ID=Msa0126510-mRNA-1:exon:17360;Parent=Msa0126510-mRNA-1
chr1_3	five_prime_UTR	55604301	55604386	55604301	ID=Msa0126510-mRNA-1:five_prime_utr;Parent=Msa0126510-mRNA-1
chr1_3	CDS	55604387	55604416	55604387	ID=Msa0126510-mRNA-1:cds;Parent=Msa0126510-mRNA-1
chr1_3	CDS	55604662	55604829	55604662	ID=Msa0126510-mRNA-1:cds;Parent=Msa0126510-mRNA-1
chr1_3	CDS	55605004	55605225	55605004	ID=Msa0126510-mRNA-1:cds;Parent=Msa0126510-mRNA-1

Gene Sequence

>Msa0126510

ATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATTTGTCCGAGGAGGAAATTGCAGGACTTAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAAGAACTGAAAAATGGCTTAGAAAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATCAACTGGTTAATGCAAGCGGCAGACGTTGATAATAGTGGTACCATAGACTACGGTGAATTCATAGCAGCCATGCTTCATCTAAACAAGGTTCAAAAGGAGGATCATCTATTTGCAGCCTTTAACTACTTTGACAAAGATGGGAGTGGATACATTACAAAGGATGAGCTCCAACAAGCCTGTAACCAGTTTGGCCTACAAGATGATCATCTAGATGATATAATACGTGAAGCTGATCGCGAT

Protein sequence

>Msa0126510

MNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEINWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLFAAFNYFDKDGSGYITKDELQQACNQFGLQDDHLDDIIREADRD