AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473190 MtrunA17_Chr3g0128921 99.541 218 1 0 8 225 5 222 6.39e-164 451
Msa0473190 MtrunA17_Chr2g0325151 99.087 219 2 0 8 226 5 223 1.28e-163 450
Msa0473190 MtrunA17_Chr3g0108371 92.523 214 16 0 8 221 5 218 9.36e-149 412
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473190 AT1G26910.1 89.252 214 23 0 8 221 5 218 2.67e-144 402
Msa0473190 AT1G14320.1 88.785 214 24 0 8 221 5 218 5.31e-143 398
Msa0473190 AT1G66580.1 87.442 215 27 0 8 222 5 219 3.79e-141 394
Msa0473190 AT1G26910.2 88.398 181 21 0 41 221 1 181 2.27e-118 335
Msa0473190 AT1G14320.2 77.660 94 19 1 130 221 31 124 1.50e-46 150
Msa0473190 AT1G14320.2 97.436 39 1 0 41 79 1 39 2.03e-20 84.0

Find 84 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAGAGATTTGGTTTATT+TGG 0.151129 3_3:+75678949 Msa0473190:three_prime_UTR
GGTTCAATTTCTTTGAAAAT+TGG 0.171559 3_3:+75679049 Msa0473190:three_prime_UTR
TTCTCACATTAAATACTAAA+AGG 0.270230 3_3:-75678916 None:intergenic
ATGCTTTCCACTTGAGAGTT+AGG 0.278634 3_3:+75677942 Msa0473190:CDS
TTCATCCATTCCATGTTCTT+AGG 0.295164 3_3:+75677966 Msa0473190:CDS
ACTGGTATGAGAGGGGCTTT+TGG 0.309142 3_3:+75678031 Msa0473190:CDS
CTTTGACATGTATTTGTTGC+AGG 0.312261 3_3:-75677906 None:intergenic
CCAAATAAACCAAATCTCTA+TGG 0.318302 3_3:-75678949 None:intergenic
CAGAAACGTGACTTTGGATA+TGG 0.332410 3_3:-75677740 None:intergenic
ATTTGCAAGTGAAGTAGATT+TGG 0.351457 3_3:-75678997 None:intergenic
ACCATTGGCCAACCGTCAAC+CGG 0.355147 3_3:+75678676 Msa0473190:CDS
GTTTCCTTTCTGTGTTCATC+TGG 0.355959 3_3:+75677829 Msa0473190:CDS
CTGTGTTCATCTGGTCAGTT+GGG 0.370061 3_3:+75677838 Msa0473190:CDS
ATTTGACGGTAACACCTTGC+AGG 0.370519 3_3:-75677707 None:intergenic
ATTCGGTGATTCTCACGAAA+TGG 0.374153 3_3:+75679027 Msa0473190:three_prime_UTR
AACATCATAAATCCTGATCT+TGG 0.385450 3_3:-75677780 None:intergenic
TCTGTGTTCATCTGGTCAGT+TGG 0.393251 3_3:+75677837 Msa0473190:CDS
TTTGTGCTAGAGTGGCTATT+GGG 0.420431 3_3:+75678068 Msa0473190:CDS
GCAGTCAGGAAAGCTCTTCC+CGG 0.421225 3_3:-75678695 None:intergenic
TTTCATGTGCGGGAGCTGAT+AGG 0.426261 3_3:+75678002 Msa0473190:CDS
TTGCAGCTTCTTGGATGCCA+TGG 0.430564 3_3:+75678653 Msa0473190:intron
TGCTAGAGTGGCTATTGGGC+AGG 0.435686 3_3:+75678072 Msa0473190:CDS
TGCTTTCCACTTGAGAGTTA+GGG 0.441216 3_3:+75677943 Msa0473190:CDS
GGAAAGCTCTTCCCGGTTGA+CGG 0.444695 3_3:-75678688 None:intergenic
GTTTGTGCTAGAGTGGCTAT+TGG 0.453432 3_3:+75678067 Msa0473190:CDS
CATGTCAAAGTTTGCAGGAA+AGG 0.453517 3_3:+75677919 Msa0473190:CDS
AGAATCAAGGGCAAAGAGAT+TGG 0.454933 3_3:-75679158 None:intergenic
TTCGGTGATTCTCACGAAAT+GGG 0.455075 3_3:+75679028 Msa0473190:three_prime_UTR
ACCTTAGCATTCACACCATC+AGG 0.455380 3_3:-75678410 None:intergenic
AGCAGCTTCAAGTGCCTCAC+TGG 0.456981 3_3:-75677876 None:intergenic
ACTTGCAAATCTCACTGATT+CGG 0.458990 3_3:+75679010 Msa0473190:three_prime_UTR
CCCGGTTGACGGTTGGCCAA+TGG 0.460642 3_3:-75678677 None:intergenic
ATGGCTTGTTCTTAATTTGA+CGG 0.461186 3_3:-75677721 None:intergenic
CCACGGCAGAAACGTGACTT+TGG 0.463875 3_3:-75677746 None:intergenic
CGTGCTAAGTTTAAGTTCCC+TGG 0.464822 3_3:+75678154 Msa0473190:CDS
CCTCATTACAGCTGGCAGTC+AGG 0.466220 3_3:-75678709 None:intergenic
AAATACATGTCAAAGTTTGC+AGG 0.470834 3_3:+75677914 Msa0473190:CDS
TTGAGGAAAAGAAAGAATCA+AGG 0.477618 3_3:-75679171 None:intergenic
ACATCATAAATCCTGATCTT+GGG 0.479634 3_3:-75677779 None:intergenic
TCTTCTTTCTGTTCGTTGCA+AGG 0.480717 3_3:+75678096 Msa0473190:CDS
CATATTAAACTGAGTTCAGT+TGG 0.482252 3_3:+75678822 Msa0473190:three_prime_UTR
TAAATCCTGATCTTGGGATC+AGG 0.483079 3_3:-75677773 None:intergenic
CTCAAGGTCGCTCTTGCAAA+CGG 0.488436 3_3:-75678848 None:intergenic
TGCCAGCTGTAATGAGGCTT+AGG 0.494501 3_3:+75678715 Msa0473190:CDS
ATGAGTAAGTAAGAAAAGTT+CGG 0.495313 3_3:-75678974 None:intergenic
TCTTGGATGCCATGGACCAT+TGG 0.496449 3_3:+75678661 Msa0473190:CDS
CCTGACTGCCAGCTGTAATG+AGG 0.497594 3_3:+75678709 Msa0473190:CDS
ATTTCTTTGAAAATTGGTGA+TGG 0.500390 3_3:+75679055 Msa0473190:three_prime_UTR
AACAAGATGCTTTCATGTGC+GGG 0.504380 3_3:+75677992 Msa0473190:CDS
AGCTCTTCCCGGTTGACGGT+TGG 0.505552 3_3:-75678684 None:intergenic
GTGTTCCTGATCCCAAGATC+AGG 0.511204 3_3:+75677768 Msa0473190:CDS
GTCAAAAGATCATTGTTAGC+AGG 0.521890 3_3:+75678179 Msa0473190:CDS
CAACAACAGCCATCATGCTC+AGG 0.528429 3_3:+75678120 Msa0473190:CDS
AGATCATTGTTAGCAGGAAG+TGG 0.531763 3_3:+75678185 Msa0473190:CDS
AGCCTAAGCCTCATTACAGC+TGG 0.535691 3_3:-75678717 None:intergenic
GACGGTTGGCCAATGGTCCA+TGG 0.540431 3_3:-75678670 None:intergenic
AAGATCAGGATTTATGATGT+TGG 0.540872 3_3:+75677782 Msa0473190:CDS
GGCTTCAGACTGGTATGAGA+GGG 0.563519 3_3:+75678023 Msa0473190:CDS
ACAAGGTGTTTGTGCTAGAG+TGG 0.564651 3_3:+75678060 Msa0473190:CDS
CCATTGGCCAACCGTCAACC+GGG 0.565470 3_3:+75678677 Msa0473190:CDS
ATACTAAAAGGAGAAATAGC+AGG 0.569566 3_3:-75678904 None:intergenic
TCATCTGGTCAGTTGGGAGA+AGG 0.572889 3_3:+75677844 Msa0473190:CDS
GGAGAGCCTCCTGAGCATGA+TGG 0.573200 3_3:-75678129 None:intergenic
CTGACCAGATGAACACAGAA+AGG 0.573863 3_3:-75677833 None:intergenic
TGAGGAAAAGAAAGAATCAA+GGG 0.574614 3_3:-75679170 None:intergenic
GATGAACCCTAACTCTCAAG+TGG 0.578245 3_3:-75677949 None:intergenic
CCAAAGTCACGTTTCTGCCG+TGG 0.586608 3_3:+75677746 Msa0473190:CDS
TAAGATTAATCATCAACTCA+AGG 0.592706 3_3:-75678864 None:intergenic
GTGAGGCACTTGAAGCTGCT+AGG 0.594487 3_3:+75677879 Msa0473190:CDS
CAACAAGATGCTTTCATGTG+CGG 0.597854 3_3:+75677991 Msa0473190:CDS
GATGTTGGCATGAAGAAGAA+AGG 0.601420 3_3:+75677797 Msa0473190:CDS
TTGATCCTAAGAACATGGAA+TGG 0.602625 3_3:-75677971 None:intergenic
TTAACTTCAGATAATCAGCT+CGG 0.606395 3_3:-75678367 None:intergenic
AGGCTTCAGACTGGTATGAG+AGG 0.607126 3_3:+75678022 Msa0473190:CDS
CAACAGCCATCATGCTCAGG+AGG 0.612805 3_3:+75678123 Msa0473190:CDS
TCTTGTTGATCCTAAGAACA+TGG 0.613434 3_3:-75677976 None:intergenic
ACTCTAGCACAAACACCTTG+TGG 0.637732 3_3:-75678058 None:intergenic
GCCTGATGGTGTGAATGCTA+AGG 0.639133 3_3:+75678409 Msa0473190:CDS
GGAGCTGATAGGCTTCAGAC+TGG 0.660599 3_3:+75678013 Msa0473190:CDS
GAGAACAGAATTATGCCTGA+TGG 0.682814 3_3:+75678395 Msa0473190:CDS
GCTTCAGACTGGTATGAGAG+GGG 0.693964 3_3:+75678024 Msa0473190:CDS
GAAGGAAAATGTGTCCAGTG+AGG 0.706232 3_3:+75677862 Msa0473190:CDS
GGAACTTAAACTTAGCACGA+CGG 0.721521 3_3:-75678150 None:intergenic
TCTTGGGATCAGGAACACCA+CGG 0.737353 3_3:-75677763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATCTTATATTTTGTTA+TGG + chr3_3:75678877-75678896 Msa0473190:three_prime_UTR 10.0%
!!! ATTAATCTTATATTTTGTTA+TGG + chr3_3:75678877-75678896 Msa0473190:three_prime_UTR 10.0%
!! TATTTAATGTGAGAAAAAAA+AGG + chr3_3:75678924-75678943 Msa0473190:three_prime_UTR 15.0%
!! TATTTAATGTGAGAAAAAAA+AGG + chr3_3:75678924-75678943 Msa0473190:three_prime_UTR 15.0%
!! CAATGAATATAGTTAAAACA+TGG - chr3_3:75678308-75678327 None:intergenic 20.0%
!!! ATCTTAGTTTGGAATATATT+GGG + chr3_3:75678520-75678539 Msa0473190:intron 20.0%
!!! AAAAAGAACTTTAAGTTGAA+AGG - chr3_3:75678627-75678646 None:intergenic 20.0%
!! TTCTCACATTAAATACTAAA+AGG - chr3_3:75678919-75678938 None:intergenic 20.0%
!! CAATGAATATAGTTAAAACA+TGG - chr3_3:75678308-75678327 None:intergenic 20.0%
!!! ATCTTAGTTTGGAATATATT+GGG + chr3_3:75678520-75678539 Msa0473190:intron 20.0%
!!! AAAAAGAACTTTAAGTTGAA+AGG - chr3_3:75678627-75678646 None:intergenic 20.0%
!! TTCTCACATTAAATACTAAA+AGG - chr3_3:75678919-75678938 None:intergenic 20.0%
!! AAAACATGGATTGAAGTAAA+AGG - chr3_3:75678294-75678313 None:intergenic 25.0%
!!! TTGTTTTAAATGCTTCTTCA+GGG + chr3_3:75678328-75678347 Msa0473190:intron 25.0%
! TAACTTGAATCATCTTAGTT+TGG + chr3_3:75678509-75678528 Msa0473190:intron 25.0%
!! CATCTTAGTTTGGAATATAT+TGG + chr3_3:75678519-75678538 Msa0473190:intron 25.0%
!! TCTTAGTTTGGAATATATTG+GGG + chr3_3:75678521-75678540 Msa0473190:intron 25.0%
!!! GTTAGTTTTGTCTAAGTAAT+CGG + chr3_3:75678601-75678620 Msa0473190:intron 25.0%
! TAAGATTAATCATCAACTCA+AGG - chr3_3:75678867-75678886 None:intergenic 25.0%
! ATGAGTAAGTAAGAAAAGTT+CGG - chr3_3:75678977-75678996 None:intergenic 25.0%
!! GGTTCAATTTCTTTGAAAAT+TGG + chr3_3:75679049-75679068 Msa0473190:three_prime_UTR 25.0%
!! ATTTCTTTGAAAATTGGTGA+TGG + chr3_3:75679055-75679074 Msa0473190:three_prime_UTR 25.0%
!! AAAACATGGATTGAAGTAAA+AGG - chr3_3:75678294-75678313 None:intergenic 25.0%
!!! TTGTTTTAAATGCTTCTTCA+GGG + chr3_3:75678328-75678347 Msa0473190:intron 25.0%
! TAACTTGAATCATCTTAGTT+TGG + chr3_3:75678509-75678528 Msa0473190:intron 25.0%
!! CATCTTAGTTTGGAATATAT+TGG + chr3_3:75678519-75678538 Msa0473190:intron 25.0%
!! TCTTAGTTTGGAATATATTG+GGG + chr3_3:75678521-75678540 Msa0473190:intron 25.0%
!!! GTTAGTTTTGTCTAAGTAAT+CGG + chr3_3:75678601-75678620 Msa0473190:intron 25.0%
! TAAGATTAATCATCAACTCA+AGG - chr3_3:75678867-75678886 None:intergenic 25.0%
! ATGAGTAAGTAAGAAAAGTT+CGG - chr3_3:75678977-75678996 None:intergenic 25.0%
!! GGTTCAATTTCTTTGAAAAT+TGG + chr3_3:75679049-75679068 Msa0473190:three_prime_UTR 25.0%
!! ATTTCTTTGAAAATTGGTGA+TGG + chr3_3:75679055-75679074 Msa0473190:three_prime_UTR 25.0%
!! TTTTATTTATAGGACCTGCA+AGG + chr3_3:75677693-75677712 Msa0473190:CDS 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG - chr3_3:75677724-75677743 None:intergenic 30.0%
ACATCATAAATCCTGATCTT+GGG - chr3_3:75677782-75677801 None:intergenic 30.0%
AACATCATAAATCCTGATCT+TGG - chr3_3:75677783-75677802 None:intergenic 30.0%
AAGATCAGGATTTATGATGT+TGG + chr3_3:75677782-75677801 Msa0473190:CDS 30.0%
AAATACATGTCAAAGTTTGC+AGG + chr3_3:75677914-75677933 Msa0473190:CDS 30.0%
! TGCTAACAATGATCTTTTGA+CGG - chr3_3:75678180-75678199 None:intergenic 30.0%
GTGGTAAGTATTTGTTCTAT+TGG + chr3_3:75678204-75678223 Msa0473190:intron 30.0%
ACAAATCTACAAAGGATACA+AGG - chr3_3:75678253-75678272 None:intergenic 30.0%
TCCTTTGTAGATTTGTAGTA+TGG + chr3_3:75678257-75678276 Msa0473190:intron 30.0%
CCTTTGTAGATTTGTAGTAT+GGG + chr3_3:75678258-75678277 Msa0473190:intron 30.0%
!!! GTTGTTTTAAATGCTTCTTC+AGG + chr3_3:75678327-75678346 Msa0473190:intron 30.0%
!! TGTTTTAAATGCTTCTTCAG+GGG + chr3_3:75678329-75678348 Msa0473190:intron 30.0%
TTAACTTCAGATAATCAGCT+CGG - chr3_3:75678370-75678389 None:intergenic 30.0%
AGAAACAAATATCCAACATG+CGG - chr3_3:75678465-75678484 None:intergenic 30.0%
AATCTGTTTGAACACTCAAT+TGG + chr3_3:75678566-75678585 Msa0473190:intron 30.0%
CATATTAAACTGAGTTCAGT+TGG + chr3_3:75678822-75678841 Msa0473190:three_prime_UTR 30.0%
ATACTAAAAGGAGAAATAGC+AGG - chr3_3:75678907-75678926 None:intergenic 30.0%
AAAAAGGTTCCATAGAGATT+TGG + chr3_3:75678940-75678959 Msa0473190:three_prime_UTR 30.0%
CCAAATAAACCAAATCTCTA+TGG - chr3_3:75678952-75678971 None:intergenic 30.0%
! CCATAGAGATTTGGTTTATT+TGG + chr3_3:75678949-75678968 Msa0473190:three_prime_UTR 30.0%
ATTTGCAAGTGAAGTAGATT+TGG - chr3_3:75679000-75679019 None:intergenic 30.0%
!! TTTTATTTATAGGACCTGCA+AGG + chr3_3:75677693-75677712 Msa0473190:CDS 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG - chr3_3:75677724-75677743 None:intergenic 30.0%
ACATCATAAATCCTGATCTT+GGG - chr3_3:75677782-75677801 None:intergenic 30.0%
AACATCATAAATCCTGATCT+TGG - chr3_3:75677783-75677802 None:intergenic 30.0%
AAGATCAGGATTTATGATGT+TGG + chr3_3:75677782-75677801 Msa0473190:CDS 30.0%
AAATACATGTCAAAGTTTGC+AGG + chr3_3:75677914-75677933 Msa0473190:CDS 30.0%
! TGCTAACAATGATCTTTTGA+CGG - chr3_3:75678180-75678199 None:intergenic 30.0%
GTGGTAAGTATTTGTTCTAT+TGG + chr3_3:75678204-75678223 Msa0473190:intron 30.0%
ACAAATCTACAAAGGATACA+AGG - chr3_3:75678253-75678272 None:intergenic 30.0%
TCCTTTGTAGATTTGTAGTA+TGG + chr3_3:75678257-75678276 Msa0473190:intron 30.0%
CCTTTGTAGATTTGTAGTAT+GGG + chr3_3:75678258-75678277 Msa0473190:intron 30.0%
!!! GTTGTTTTAAATGCTTCTTC+AGG + chr3_3:75678327-75678346 Msa0473190:intron 30.0%
!! TGTTTTAAATGCTTCTTCAG+GGG + chr3_3:75678329-75678348 Msa0473190:intron 30.0%
TTAACTTCAGATAATCAGCT+CGG - chr3_3:75678370-75678389 None:intergenic 30.0%
AGAAACAAATATCCAACATG+CGG - chr3_3:75678465-75678484 None:intergenic 30.0%
AATCTGTTTGAACACTCAAT+TGG + chr3_3:75678566-75678585 Msa0473190:intron 30.0%
CATATTAAACTGAGTTCAGT+TGG + chr3_3:75678822-75678841 Msa0473190:three_prime_UTR 30.0%
ATACTAAAAGGAGAAATAGC+AGG - chr3_3:75678907-75678926 None:intergenic 30.0%
AAAAAGGTTCCATAGAGATT+TGG + chr3_3:75678940-75678959 Msa0473190:three_prime_UTR 30.0%
CCAAATAAACCAAATCTCTA+TGG - chr3_3:75678952-75678971 None:intergenic 30.0%
! CCATAGAGATTTGGTTTATT+TGG + chr3_3:75678949-75678968 Msa0473190:three_prime_UTR 30.0%
ATTTGCAAGTGAAGTAGATT+TGG - chr3_3:75679000-75679019 None:intergenic 30.0%
! CTTTGACATGTATTTGTTGC+AGG - chr3_3:75677909-75677928 None:intergenic 35.0%
TTCATCCATTCCATGTTCTT+AGG + chr3_3:75677966-75677985 Msa0473190:CDS 35.0%
TTGATCCTAAGAACATGGAA+TGG - chr3_3:75677974-75677993 None:intergenic 35.0%
TCTTGTTGATCCTAAGAACA+TGG - chr3_3:75677979-75677998 None:intergenic 35.0%
GTCAAAAGATCATTGTTAGC+AGG + chr3_3:75678179-75678198 Msa0473190:CDS 35.0%
CCCATACTACAAATCTACAA+AGG - chr3_3:75678261-75678280 None:intergenic 35.0%
!! TTTGTAGTATGGGAGTACTT+TGG + chr3_3:75678268-75678287 Msa0473190:intron 35.0%
! GCAAAAAGTATGTCTTTAGC+AGG - chr3_3:75678489-75678508 None:intergenic 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG + chr3_3:75678644-75678663 Msa0473190:intron 35.0%
! ACTTGCAAATCTCACTGATT+CGG + chr3_3:75679010-75679029 Msa0473190:three_prime_UTR 35.0%
! CTTTGACATGTATTTGTTGC+AGG - chr3_3:75677909-75677928 None:intergenic 35.0%
TTCATCCATTCCATGTTCTT+AGG + chr3_3:75677966-75677985 Msa0473190:CDS 35.0%
TTGATCCTAAGAACATGGAA+TGG - chr3_3:75677974-75677993 None:intergenic 35.0%
TCTTGTTGATCCTAAGAACA+TGG - chr3_3:75677979-75677998 None:intergenic 35.0%
GTCAAAAGATCATTGTTAGC+AGG + chr3_3:75678179-75678198 Msa0473190:CDS 35.0%
CCCATACTACAAATCTACAA+AGG - chr3_3:75678261-75678280 None:intergenic 35.0%
!! TTTGTAGTATGGGAGTACTT+TGG + chr3_3:75678268-75678287 Msa0473190:intron 35.0%
! GCAAAAAGTATGTCTTTAGC+AGG - chr3_3:75678489-75678508 None:intergenic 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG + chr3_3:75678644-75678663 Msa0473190:intron 35.0%
! ACTTGCAAATCTCACTGATT+CGG + chr3_3:75679010-75679029 Msa0473190:three_prime_UTR 35.0%
CAGAAACGTGACTTTGGATA+TGG - chr3_3:75677743-75677762 None:intergenic 40.0%
TAAATCCTGATCTTGGGATC+AGG - chr3_3:75677776-75677795 None:intergenic 40.0%
GATGTTGGCATGAAGAAGAA+AGG + chr3_3:75677797-75677816 Msa0473190:CDS 40.0%
GTTTCCTTTCTGTGTTCATC+TGG + chr3_3:75677829-75677848 Msa0473190:CDS 40.0%
CATGTCAAAGTTTGCAGGAA+AGG + chr3_3:75677919-75677938 Msa0473190:CDS 40.0%
ATGCTTTCCACTTGAGAGTT+AGG + chr3_3:75677942-75677961 Msa0473190:CDS 40.0%
TGCTTTCCACTTGAGAGTTA+GGG + chr3_3:75677943-75677962 Msa0473190:CDS 40.0%
CAACAAGATGCTTTCATGTG+CGG + chr3_3:75677991-75678010 Msa0473190:CDS 40.0%
AACAAGATGCTTTCATGTGC+GGG + chr3_3:75677992-75678011 Msa0473190:CDS 40.0%
TTTGTGCTAGAGTGGCTATT+GGG + chr3_3:75678068-75678087 Msa0473190:CDS 40.0%
TCTTCTTTCTGTTCGTTGCA+AGG + chr3_3:75678096-75678115 Msa0473190:CDS 40.0%
GGAACTTAAACTTAGCACGA+CGG - chr3_3:75678153-75678172 None:intergenic 40.0%
AGATCATTGTTAGCAGGAAG+TGG + chr3_3:75678185-75678204 Msa0473190:CDS 40.0%
GAGAACAGAATTATGCCTGA+TGG + chr3_3:75678395-75678414 Msa0473190:CDS 40.0%
GAATTCATTGTACCGCATGT+TGG + chr3_3:75678450-75678469 Msa0473190:intron 40.0%
! ATTCGGTGATTCTCACGAAA+TGG + chr3_3:75679027-75679046 Msa0473190:three_prime_UTR 40.0%
TTCGGTGATTCTCACGAAAT+GGG + chr3_3:75679028-75679047 Msa0473190:three_prime_UTR 40.0%
AGAATCAAGGGCAAAGAGAT+TGG - chr3_3:75679161-75679180 None:intergenic 40.0%
CAGAAACGTGACTTTGGATA+TGG - chr3_3:75677743-75677762 None:intergenic 40.0%
TAAATCCTGATCTTGGGATC+AGG - chr3_3:75677776-75677795 None:intergenic 40.0%
GATGTTGGCATGAAGAAGAA+AGG + chr3_3:75677797-75677816 Msa0473190:CDS 40.0%
GTTTCCTTTCTGTGTTCATC+TGG + chr3_3:75677829-75677848 Msa0473190:CDS 40.0%
CATGTCAAAGTTTGCAGGAA+AGG + chr3_3:75677919-75677938 Msa0473190:CDS 40.0%
ATGCTTTCCACTTGAGAGTT+AGG + chr3_3:75677942-75677961 Msa0473190:CDS 40.0%
TGCTTTCCACTTGAGAGTTA+GGG + chr3_3:75677943-75677962 Msa0473190:CDS 40.0%
CAACAAGATGCTTTCATGTG+CGG + chr3_3:75677991-75678010 Msa0473190:CDS 40.0%
AACAAGATGCTTTCATGTGC+GGG + chr3_3:75677992-75678011 Msa0473190:CDS 40.0%
TTTGTGCTAGAGTGGCTATT+GGG + chr3_3:75678068-75678087 Msa0473190:CDS 40.0%
TCTTCTTTCTGTTCGTTGCA+AGG + chr3_3:75678096-75678115 Msa0473190:CDS 40.0%
GGAACTTAAACTTAGCACGA+CGG - chr3_3:75678153-75678172 None:intergenic 40.0%
AGATCATTGTTAGCAGGAAG+TGG + chr3_3:75678185-75678204 Msa0473190:CDS 40.0%
GAGAACAGAATTATGCCTGA+TGG + chr3_3:75678395-75678414 Msa0473190:CDS 40.0%
GAATTCATTGTACCGCATGT+TGG + chr3_3:75678450-75678469 Msa0473190:intron 40.0%
! ATTCGGTGATTCTCACGAAA+TGG + chr3_3:75679027-75679046 Msa0473190:three_prime_UTR 40.0%
TTCGGTGATTCTCACGAAAT+GGG + chr3_3:75679028-75679047 Msa0473190:three_prime_UTR 40.0%
AGAATCAAGGGCAAAGAGAT+TGG - chr3_3:75679161-75679180 None:intergenic 40.0%
ATTTGACGGTAACACCTTGC+AGG - chr3_3:75677710-75677729 None:intergenic 45.0%
CTGACCAGATGAACACAGAA+AGG - chr3_3:75677836-75677855 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG + chr3_3:75677837-75677856 Msa0473190:CDS 45.0%
CTGTGTTCATCTGGTCAGTT+GGG + chr3_3:75677838-75677857 Msa0473190:CDS 45.0%
GAAGGAAAATGTGTCCAGTG+AGG + chr3_3:75677862-75677881 Msa0473190:CDS 45.0%
GATGAACCCTAACTCTCAAG+TGG - chr3_3:75677952-75677971 None:intergenic 45.0%
ACTCTAGCACAAACACCTTG+TGG - chr3_3:75678061-75678080 None:intergenic 45.0%
! ACAAGGTGTTTGTGCTAGAG+TGG + chr3_3:75678060-75678079 Msa0473190:CDS 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG + chr3_3:75678067-75678086 Msa0473190:CDS 45.0%
! CGTGCTAAGTTTAAGTTCCC+TGG + chr3_3:75678154-75678173 Msa0473190:CDS 45.0%
! CAATGATCTTTTGACGGCCA+GGG - chr3_3:75678174-75678193 None:intergenic 45.0%
! ACAATGATCTTTTGACGGCC+AGG - chr3_3:75678175-75678194 None:intergenic 45.0%
ACCTTAGCATTCACACCATC+AGG - chr3_3:75678413-75678432 None:intergenic 45.0%
ATTTGACGGTAACACCTTGC+AGG - chr3_3:75677710-75677729 None:intergenic 45.0%
CTGACCAGATGAACACAGAA+AGG - chr3_3:75677836-75677855 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG + chr3_3:75677837-75677856 Msa0473190:CDS 45.0%
CTGTGTTCATCTGGTCAGTT+GGG + chr3_3:75677838-75677857 Msa0473190:CDS 45.0%
GAAGGAAAATGTGTCCAGTG+AGG + chr3_3:75677862-75677881 Msa0473190:CDS 45.0%
GATGAACCCTAACTCTCAAG+TGG - chr3_3:75677952-75677971 None:intergenic 45.0%
ACTCTAGCACAAACACCTTG+TGG - chr3_3:75678061-75678080 None:intergenic 45.0%
! ACAAGGTGTTTGTGCTAGAG+TGG + chr3_3:75678060-75678079 Msa0473190:CDS 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG + chr3_3:75678067-75678086 Msa0473190:CDS 45.0%
! CGTGCTAAGTTTAAGTTCCC+TGG + chr3_3:75678154-75678173 Msa0473190:CDS 45.0%
! CAATGATCTTTTGACGGCCA+GGG - chr3_3:75678174-75678193 None:intergenic 45.0%
! ACAATGATCTTTTGACGGCC+AGG - chr3_3:75678175-75678194 None:intergenic 45.0%
ACCTTAGCATTCACACCATC+AGG - chr3_3:75678413-75678432 None:intergenic 45.0%
TCTTGGGATCAGGAACACCA+CGG - chr3_3:75677766-75677785 None:intergenic 50.0%
GTGTTCCTGATCCCAAGATC+AGG + chr3_3:75677768-75677787 Msa0473190:CDS 50.0%
TCATCTGGTCAGTTGGGAGA+AGG + chr3_3:75677844-75677863 Msa0473190:CDS 50.0%
TTTCATGTGCGGGAGCTGAT+AGG + chr3_3:75678002-75678021 Msa0473190:CDS 50.0%
AGGCTTCAGACTGGTATGAG+AGG + chr3_3:75678022-75678041 Msa0473190:CDS 50.0%
GGCTTCAGACTGGTATGAGA+GGG + chr3_3:75678023-75678042 Msa0473190:CDS 50.0%
GCTTCAGACTGGTATGAGAG+GGG + chr3_3:75678024-75678043 Msa0473190:CDS 50.0%
! ACTGGTATGAGAGGGGCTTT+TGG + chr3_3:75678031-75678050 Msa0473190:CDS 50.0%
!! GGGGCTTTTGGAAAACCACA+AGG + chr3_3:75678043-75678062 Msa0473190:CDS 50.0%
CAACAACAGCCATCATGCTC+AGG + chr3_3:75678120-75678139 Msa0473190:CDS 50.0%
! GCCTGATGGTGTGAATGCTA+AGG + chr3_3:75678409-75678428 Msa0473190:CDS 50.0%
TTGCAGCTTCTTGGATGCCA+TGG + chr3_3:75678653-75678672 Msa0473190:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG + chr3_3:75678661-75678680 Msa0473190:CDS 50.0%
TGCCAGCTGTAATGAGGCTT+AGG + chr3_3:75678715-75678734 Msa0473190:CDS 50.0%
AGCCTAAGCCTCATTACAGC+TGG - chr3_3:75678720-75678739 None:intergenic 50.0%
CTCAAGGTCGCTCTTGCAAA+CGG - chr3_3:75678851-75678870 None:intergenic 50.0%
TCTTGGGATCAGGAACACCA+CGG - chr3_3:75677766-75677785 None:intergenic 50.0%
GTGTTCCTGATCCCAAGATC+AGG + chr3_3:75677768-75677787 Msa0473190:CDS 50.0%
TCATCTGGTCAGTTGGGAGA+AGG + chr3_3:75677844-75677863 Msa0473190:CDS 50.0%
TTTCATGTGCGGGAGCTGAT+AGG + chr3_3:75678002-75678021 Msa0473190:CDS 50.0%
AGGCTTCAGACTGGTATGAG+AGG + chr3_3:75678022-75678041 Msa0473190:CDS 50.0%
GGCTTCAGACTGGTATGAGA+GGG + chr3_3:75678023-75678042 Msa0473190:CDS 50.0%
GCTTCAGACTGGTATGAGAG+GGG + chr3_3:75678024-75678043 Msa0473190:CDS 50.0%
! ACTGGTATGAGAGGGGCTTT+TGG + chr3_3:75678031-75678050 Msa0473190:CDS 50.0%
!! GGGGCTTTTGGAAAACCACA+AGG + chr3_3:75678043-75678062 Msa0473190:CDS 50.0%
CAACAACAGCCATCATGCTC+AGG + chr3_3:75678120-75678139 Msa0473190:CDS 50.0%
! GCCTGATGGTGTGAATGCTA+AGG + chr3_3:75678409-75678428 Msa0473190:CDS 50.0%
TTGCAGCTTCTTGGATGCCA+TGG + chr3_3:75678653-75678672 Msa0473190:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG + chr3_3:75678661-75678680 Msa0473190:CDS 50.0%
TGCCAGCTGTAATGAGGCTT+AGG + chr3_3:75678715-75678734 Msa0473190:CDS 50.0%
AGCCTAAGCCTCATTACAGC+TGG - chr3_3:75678720-75678739 None:intergenic 50.0%
CTCAAGGTCGCTCTTGCAAA+CGG - chr3_3:75678851-75678870 None:intergenic 50.0%
CCACGGCAGAAACGTGACTT+TGG - chr3_3:75677749-75677768 None:intergenic 55.0%
CCAAAGTCACGTTTCTGCCG+TGG + chr3_3:75677746-75677765 Msa0473190:CDS 55.0%
AGCAGCTTCAAGTGCCTCAC+TGG - chr3_3:75677879-75677898 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG + chr3_3:75677879-75677898 Msa0473190:CDS 55.0%
GGAGCTGATAGGCTTCAGAC+TGG + chr3_3:75678013-75678032 Msa0473190:CDS 55.0%
TGCTAGAGTGGCTATTGGGC+AGG + chr3_3:75678072-75678091 Msa0473190:CDS 55.0%
CAACAGCCATCATGCTCAGG+AGG + chr3_3:75678123-75678142 Msa0473190:CDS 55.0%
ACCATTGGCCAACCGTCAAC+CGG + chr3_3:75678676-75678695 Msa0473190:CDS 55.0%
GGAAAGCTCTTCCCGGTTGA+CGG - chr3_3:75678691-75678710 None:intergenic 55.0%
GCAGTCAGGAAAGCTCTTCC+CGG - chr3_3:75678698-75678717 None:intergenic 55.0%
CCTCATTACAGCTGGCAGTC+AGG - chr3_3:75678712-75678731 None:intergenic 55.0%
CCTGACTGCCAGCTGTAATG+AGG + chr3_3:75678709-75678728 Msa0473190:CDS 55.0%
CCACGGCAGAAACGTGACTT+TGG - chr3_3:75677749-75677768 None:intergenic 55.0%
CCAAAGTCACGTTTCTGCCG+TGG + chr3_3:75677746-75677765 Msa0473190:CDS 55.0%
AGCAGCTTCAAGTGCCTCAC+TGG - chr3_3:75677879-75677898 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG + chr3_3:75677879-75677898 Msa0473190:CDS 55.0%
GGAGCTGATAGGCTTCAGAC+TGG + chr3_3:75678013-75678032 Msa0473190:CDS 55.0%
TGCTAGAGTGGCTATTGGGC+AGG + chr3_3:75678072-75678091 Msa0473190:CDS 55.0%
CAACAGCCATCATGCTCAGG+AGG + chr3_3:75678123-75678142 Msa0473190:CDS 55.0%
ACCATTGGCCAACCGTCAAC+CGG + chr3_3:75678676-75678695 Msa0473190:CDS 55.0%
GGAAAGCTCTTCCCGGTTGA+CGG - chr3_3:75678691-75678710 None:intergenic 55.0%
GCAGTCAGGAAAGCTCTTCC+CGG - chr3_3:75678698-75678717 None:intergenic 55.0%
CCTCATTACAGCTGGCAGTC+AGG - chr3_3:75678712-75678731 None:intergenic 55.0%
CCTGACTGCCAGCTGTAATG+AGG + chr3_3:75678709-75678728 Msa0473190:CDS 55.0%
GGAGAGCCTCCTGAGCATGA+TGG - chr3_3:75678132-75678151 None:intergenic 60.0%
! GACGGTTGGCCAATGGTCCA+TGG - chr3_3:75678673-75678692 None:intergenic 60.0%
CCATTGGCCAACCGTCAACC+GGG + chr3_3:75678677-75678696 Msa0473190:CDS 60.0%
AGCTCTTCCCGGTTGACGGT+TGG - chr3_3:75678687-75678706 None:intergenic 60.0%
GGAGAGCCTCCTGAGCATGA+TGG - chr3_3:75678132-75678151 None:intergenic 60.0%
! GACGGTTGGCCAATGGTCCA+TGG - chr3_3:75678673-75678692 None:intergenic 60.0%
CCATTGGCCAACCGTCAACC+GGG + chr3_3:75678677-75678696 Msa0473190:CDS 60.0%
AGCTCTTCCCGGTTGACGGT+TGG - chr3_3:75678687-75678706 None:intergenic 60.0%
! CCCGGTTGACGGTTGGCCAA+TGG - chr3_3:75678680-75678699 None:intergenic 65.0%
! CCCGGTTGACGGTTGGCCAA+TGG - chr3_3:75678680-75678699 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75677686 75679183 75677686 ID=Msa0473190;Name=Msa0473190
chr3_3 mRNA 75677686 75679183 75677686 ID=Msa0473190-mRNA-1;Parent=Msa0473190;Name=Msa0473190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|1|3|447|226
chr3_3 exon 75677686 75678206 75677686 ID=Msa0473190-mRNA-1:exon:19664;Parent=Msa0473190-mRNA-1
chr3_3 exon 75678349 75678430 75678349 ID=Msa0473190-mRNA-1:exon:19665;Parent=Msa0473190-mRNA-1
chr3_3 exon 75678659 75679183 75678659 ID=Msa0473190-mRNA-1:exon:19666;Parent=Msa0473190-mRNA-1
chr3_3 CDS 75677686 75678206 75677686 ID=Msa0473190-mRNA-1:cds;Parent=Msa0473190-mRNA-1
chr3_3 CDS 75678349 75678430 75678349 ID=Msa0473190-mRNA-1:cds;Parent=Msa0473190-mRNA-1
chr3_3 CDS 75678659 75678736 75678659 ID=Msa0473190-mRNA-1:cds;Parent=Msa0473190-mRNA-1
chr3_3 three_prime_UTR 75678737 75679183 75678737 ID=Msa0473190-mRNA-1:three_prime_utr;Parent=Msa0473190-mRNA-1
Gene Sequence

>Msa0473190

ATGTTTGTTTTATTTATAGGACCTGCAAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGCATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTGTCCAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAATACATGTCAAAGTTTGCAGGAAAGGATGCTTTCCACTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCGGGAGCTGATAGGCTTCAGACTGGTATGAGAGGGGCTTTTGGAAAACCACAAGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTTCTTCTTTCTGTTCGTTGCAAGGACAACAACAGCCATCATGCTCAGGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAGATTAACCGAGCTGATTATCTGAAGTTAAAGTCTGAGAACAGAATTATGCCTGATGGTGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTCAACCGGGAAGAGCTTTCCTGACTGCCAGCTGTAATGAGGCTTAG

Protein sequence

>Msa0473190

MFVLFIGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLTASCNEA*