Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126560 | sp|Q9ZVQ6|P2B10_ARATH | 42.322 | 267 | 138 | 6 | 4 | 266 | 14 | 268 | 2.24e-67 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126560 | G7I5K4 | 86.567 | 268 | 31 | 2 | 1 | 267 | 1 | 264 | 1.76e-164 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031570 | Msa0126560 | 0.874461 | 6.631294e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126560 | MtrunA17_Chr1g0189621 | 86.567 | 268 | 31 | 2 | 1 | 267 | 1 | 264 | 3.38e-168 | 465 |
| Msa0126560 | MtrunA17_Chr1g0189611 | 84.074 | 270 | 35 | 5 | 1 | 267 | 1 | 265 | 1.12e-158 | 441 |
| Msa0126560 | MtrunA17_Chr1g0189721 | 75.556 | 270 | 58 | 4 | 1 | 267 | 1 | 265 | 1.47e-144 | 405 |
| Msa0126560 | MtrunA17_Chr1g0203281 | 71.223 | 278 | 63 | 5 | 1 | 267 | 1 | 272 | 1.38e-131 | 373 |
| Msa0126560 | MtrunA17_Chr1g0189821 | 70.149 | 268 | 77 | 2 | 1 | 267 | 1 | 266 | 1.48e-130 | 370 |
| Msa0126560 | MtrunA17_Chr1g0189751 | 72.222 | 270 | 67 | 4 | 1 | 267 | 1 | 265 | 1.08e-124 | 357 |
| Msa0126560 | MtrunA17_Chr1g0189671 | 66.426 | 277 | 78 | 5 | 1 | 267 | 1 | 272 | 2.82e-122 | 350 |
| Msa0126560 | MtrunA17_Chr1g0190071 | 65.724 | 283 | 79 | 4 | 1 | 267 | 1 | 281 | 3.01e-121 | 347 |
| Msa0126560 | MtrunA17_Chr1g0189661 | 67.626 | 278 | 79 | 4 | 1 | 267 | 1 | 278 | 4.96e-117 | 337 |
| Msa0126560 | MtrunA17_Chr1g0189641 | 62.950 | 278 | 87 | 5 | 1 | 267 | 1 | 273 | 7.53e-114 | 328 |
| Msa0126560 | MtrunA17_Chr1g0203331 | 68.595 | 242 | 57 | 4 | 20 | 247 | 5 | 241 | 3.50e-109 | 315 |
| Msa0126560 | MtrunA17_Chr1g0157451 | 61.131 | 283 | 94 | 5 | 1 | 267 | 1 | 283 | 6.20e-108 | 314 |
| Msa0126560 | MtrunA17_Chr3g0078331 | 58.804 | 301 | 85 | 5 | 4 | 267 | 17 | 315 | 4.41e-107 | 313 |
| Msa0126560 | MtrunA17_Chr3g0097191 | 60.377 | 265 | 97 | 3 | 4 | 267 | 10 | 267 | 1.14e-101 | 297 |
| Msa0126560 | MtrunA17_Chr1g0189711 | 59.928 | 277 | 99 | 7 | 1 | 267 | 1 | 275 | 1.76e-96 | 284 |
| Msa0126560 | MtrunA17_Chr3g0095261 | 55.124 | 283 | 99 | 5 | 4 | 267 | 10 | 283 | 1.06e-90 | 270 |
| Msa0126560 | MtrunA17_Chr7g0260801 | 56.777 | 273 | 101 | 7 | 1 | 267 | 13 | 274 | 3.96e-90 | 268 |
| Msa0126560 | MtrunA17_Chr1g0189781 | 52.920 | 274 | 115 | 7 | 2 | 267 | 6 | 273 | 6.19e-86 | 257 |
| Msa0126560 | MtrunA17_Chr1g0189701 | 53.952 | 291 | 105 | 9 | 1 | 267 | 32 | 317 | 7.39e-85 | 256 |
| Msa0126560 | MtrunA17_Chr1g0189541 | 72.254 | 173 | 42 | 4 | 96 | 267 | 17 | 184 | 2.53e-82 | 245 |
| Msa0126560 | MtrunA17_Chr1g0189591 | 45.667 | 300 | 125 | 7 | 2 | 267 | 11 | 306 | 8.62e-73 | 225 |
| Msa0126560 | MtrunA17_Chr1g0189651 | 62.983 | 181 | 55 | 5 | 88 | 267 | 10 | 179 | 3.79e-62 | 193 |
| Msa0126560 | MtrunA17_Chr7g0272091 | 44.366 | 284 | 135 | 10 | 2 | 267 | 5 | 283 | 2.14e-61 | 195 |
| Msa0126560 | MtrunA17_Chr2g0317291 | 54.802 | 177 | 75 | 3 | 91 | 264 | 38 | 212 | 5.22e-55 | 177 |
| Msa0126560 | MtrunA17_Chr1g0192371 | 38.489 | 278 | 157 | 7 | 2 | 267 | 6 | 281 | 2.52e-53 | 174 |
| Msa0126560 | MtrunA17_Chr1g0189771 | 54.545 | 165 | 67 | 3 | 5 | 164 | 13 | 174 | 1.05e-52 | 169 |
| Msa0126560 | MtrunA17_Chr7g0272101 | 38.433 | 268 | 150 | 9 | 4 | 267 | 1 | 257 | 4.16e-47 | 157 |
| Msa0126560 | MtrunA17_Chr1g0189571 | 45.411 | 207 | 80 | 6 | 90 | 267 | 3 | 205 | 1.11e-45 | 152 |
| Msa0126560 | MtrunA17_Chr1g0188311 | 58.088 | 136 | 36 | 3 | 131 | 247 | 22 | 155 | 4.51e-43 | 144 |
| Msa0126560 | MtrunA17_Chr4g0010881 | 36.466 | 266 | 138 | 8 | 4 | 267 | 1 | 237 | 7.53e-43 | 146 |
| Msa0126560 | MtrunA17_Chr2g0300961 | 61.832 | 131 | 40 | 4 | 1 | 130 | 1 | 122 | 2.25e-41 | 139 |
| Msa0126560 | MtrunA17_Chr7g0260811 | 58.824 | 119 | 40 | 4 | 60 | 175 | 38 | 150 | 1.87e-31 | 114 |
| Msa0126560 | MtrunA17_Chr3g0102081 | 57.282 | 103 | 41 | 2 | 130 | 231 | 23 | 123 | 3.46e-30 | 109 |
| Msa0126560 | MtrunA17_Chr1g0189531 | 67.778 | 90 | 26 | 1 | 1 | 90 | 64 | 150 | 2.04e-29 | 110 |
| Msa0126560 | MtrunA17_Chr7g0265551 | 27.106 | 273 | 177 | 7 | 6 | 266 | 93 | 355 | 2.35e-29 | 114 |
| Msa0126560 | MtrunA17_Chr3g0143881 | 48.760 | 121 | 47 | 4 | 148 | 267 | 1 | 107 | 6.80e-27 | 100 |
| Msa0126560 | MtrunA17_Chr1g0189631 | 54.128 | 109 | 33 | 3 | 148 | 241 | 1 | 107 | 6.26e-25 | 95.9 |
| Msa0126560 | MtrunA17_Chr6g0472801 | 30.370 | 270 | 171 | 9 | 2 | 267 | 20 | 276 | 1.43e-23 | 96.7 |
| Msa0126560 | MtrunA17_Chr4g0057281 | 30.224 | 268 | 165 | 10 | 6 | 266 | 21 | 273 | 3.33e-21 | 90.5 |
| Msa0126560 | MtrunA17_Chr8g0350401 | 27.481 | 262 | 176 | 7 | 6 | 262 | 24 | 276 | 5.88e-21 | 89.7 |
| Msa0126560 | MtrunA17_Chr1g0203751 | 28.464 | 267 | 178 | 8 | 2 | 266 | 26 | 281 | 3.04e-20 | 87.8 |
| Msa0126560 | MtrunA17_Chr5g0397981 | 28.137 | 263 | 176 | 8 | 6 | 266 | 37 | 288 | 1.64e-19 | 85.9 |
| Msa0126560 | MtrunA17_Chr1g0189761 | 66.071 | 56 | 19 | 0 | 212 | 267 | 39 | 94 | 4.85e-18 | 77.0 |
| Msa0126560 | MtrunA17_Chr4g0043591 | 26.087 | 207 | 130 | 6 | 66 | 267 | 102 | 290 | 1.83e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126560 | AT2G02360.1 | 42.322 | 267 | 138 | 6 | 4 | 266 | 14 | 268 | 2.28e-68 | 213 |
| Msa0126560 | AT1G80110.1 | 45.038 | 262 | 132 | 4 | 7 | 266 | 4 | 255 | 3.38e-67 | 209 |
| Msa0126560 | AT2G02340.1 | 38.828 | 273 | 156 | 7 | 1 | 266 | 33 | 301 | 3.70e-57 | 185 |
| Msa0126560 | AT2G02240.1 | 40.075 | 267 | 145 | 6 | 4 | 266 | 61 | 316 | 1.69e-55 | 181 |
| Msa0126560 | AT2G02250.1 | 39.925 | 268 | 145 | 6 | 4 | 266 | 47 | 303 | 2.73e-53 | 175 |
| Msa0126560 | AT1G09155.1 | 39.929 | 283 | 143 | 9 | 7 | 267 | 3 | 280 | 6.26e-53 | 174 |
| Msa0126560 | AT2G02230.1 | 34.194 | 310 | 154 | 8 | 2 | 267 | 30 | 333 | 3.45e-51 | 171 |
| Msa0126560 | AT1G56250.1 | 39.576 | 283 | 144 | 9 | 7 | 267 | 4 | 281 | 4.98e-49 | 164 |
| Msa0126560 | AT1G56240.1 | 38.298 | 282 | 147 | 9 | 7 | 266 | 4 | 280 | 5.30e-47 | 158 |
| Msa0126560 | AT2G02310.1 | 35.075 | 268 | 162 | 5 | 4 | 267 | 45 | 304 | 5.34e-47 | 159 |
| Msa0126560 | AT2G02320.1 | 37.407 | 270 | 147 | 10 | 6 | 266 | 42 | 298 | 5.57e-47 | 159 |
| Msa0126560 | AT2G02350.2 | 36.296 | 270 | 158 | 8 | 2 | 266 | 22 | 282 | 6.39e-46 | 156 |
| Msa0126560 | AT2G02300.1 | 35.662 | 272 | 143 | 9 | 4 | 267 | 34 | 281 | 4.41e-40 | 140 |
| Msa0126560 | AT5G24560.1 | 45.517 | 145 | 71 | 2 | 4 | 147 | 3 | 140 | 6.01e-36 | 127 |
| Msa0126560 | AT3G53000.1 | 29.242 | 277 | 165 | 8 | 6 | 266 | 23 | 284 | 1.58e-32 | 121 |
| Msa0126560 | AT2G02350.1 | 33.929 | 168 | 103 | 6 | 104 | 266 | 1 | 165 | 1.07e-20 | 87.0 |
| Msa0126560 | AT3G61060.1 | 24.335 | 263 | 189 | 6 | 6 | 267 | 27 | 280 | 2.96e-19 | 85.5 |
| Msa0126560 | AT3G61060.2 | 23.574 | 263 | 192 | 5 | 6 | 267 | 27 | 281 | 1.02e-18 | 84.0 |
| Msa0126560 | AT1G63090.1 | 28.030 | 264 | 175 | 8 | 6 | 266 | 28 | 279 | 1.47e-18 | 83.6 |
| Msa0126560 | AT1G12710.1 | 26.616 | 263 | 180 | 7 | 6 | 266 | 30 | 281 | 1.28e-17 | 80.9 |
| Msa0126560 | AT5G52120.1 | 31.977 | 172 | 108 | 4 | 1 | 167 | 18 | 185 | 3.75e-17 | 79.7 |
| Msa0126560 | AT1G12710.2 | 24.000 | 300 | 183 | 9 | 6 | 266 | 30 | 323 | 5.79e-13 | 68.2 |
| Msa0126560 | AT4G19850.3 | 28.022 | 182 | 98 | 8 | 97 | 267 | 59 | 218 | 9.07e-12 | 63.5 |
| Msa0126560 | AT4G19850.1 | 28.962 | 183 | 95 | 9 | 97 | 267 | 17 | 176 | 9.55e-12 | 62.8 |
Find 83 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACTTCTTTATCTTCT+AGG | 0.116706 | 1_3:+55671999 | None:intergenic |
| CTTATTGTGATTTAATATAT+TGG | 0.195796 | 1_3:-55671717 | Msa0126560:three_prime_UTR |
| GATAAGCTGCATACTGATTT+CGG | 0.259560 | 1_3:+55672239 | None:intergenic |
| TGTTGCCCACCTTCCACATT+TGG | 0.295277 | 1_3:+55672106 | None:intergenic |
| TTATTGTGATTTAATATATT+GGG | 0.310280 | 1_3:-55671716 | Msa0126560:three_prime_UTR |
| GGATTGGGATAGCTGAGTTT+TGG | 0.310973 | 1_3:-55671683 | Msa0126560:three_prime_UTR |
| ATCGGGGAGTTCTTCAATTC+AGG | 0.312491 | 1_3:-55672022 | Msa0126560:CDS |
| ATAAGCTGCATACTGATTTC+GGG | 0.316082 | 1_3:+55672240 | None:intergenic |
| GATAACATCACGGGATAGTT+TGG | 0.324234 | 1_3:+55672178 | None:intergenic |
| TAGATCTCTTGCCATTGATT+GGG | 0.325854 | 1_3:-55675332 | Msa0126560:CDS |
| CTAGATCTCTTGCCATTGAT+TGG | 0.334447 | 1_3:-55675333 | Msa0126560:CDS |
| TTGGGATTGGGATTGGGATT+GGG | 0.334695 | 1_3:-55671698 | Msa0126560:three_prime_UTR |
| ATTGGGATTGGGATTGGGAT+TGG | 0.338450 | 1_3:-55671699 | Msa0126560:three_prime_UTR |
| TGATCATTGTCGATGATGAT+AGG | 0.340168 | 1_3:+55675514 | None:intergenic |
| CCGCCGATTCCGACGCCGTC+TGG | 0.340798 | 1_3:-55675648 | Msa0126560:CDS |
| TGCTTTAGAGAGAAACAGTT+TGG | 0.344205 | 1_3:+55671804 | None:intergenic |
| ACAAGAAGCTCAGCGACTTC+AGG | 0.347960 | 1_3:+55672310 | None:intergenic |
| TAATATATTGGGATTGGGAT+TGG | 0.351282 | 1_3:-55671705 | Msa0126560:three_prime_UTR |
| CTTGTGTTCAAGATGATTGA+TGG | 0.366427 | 1_3:-55672217 | Msa0126560:CDS |
| GTGATTTAATATATTGGGAT+TGG | 0.370051 | 1_3:-55671711 | Msa0126560:three_prime_UTR |
| AGAAGTTCAAATGAATATAA+AGG | 0.377032 | 1_3:-55671987 | Msa0126560:CDS |
| GACAGAGTTTGAGGAATTGC+CGG | 0.379323 | 1_3:-55675755 | Msa0126560:CDS |
| GGATTTCTATGCCTAATTCC+AGG | 0.380639 | 1_3:-55675285 | Msa0126560:intron |
| TGATTTAATATATTGGGATT+GGG | 0.389928 | 1_3:-55671710 | Msa0126560:three_prime_UTR |
| AATATATTGGGATTGGGATT+GGG | 0.393616 | 1_3:-55671704 | Msa0126560:three_prime_UTR |
| TGAAATTCAGAGCTTTCAAT+TGG | 0.394466 | 1_3:-55675392 | Msa0126560:intron |
| TAGTACTAAAATTGTCTGTT+TGG | 0.397688 | 1_3:-55672131 | Msa0126560:CDS |
| GGGTGGTTGGAGATTGAAAT+CGG | 0.403576 | 1_3:-55672040 | Msa0126560:CDS |
| CAAAAGAATGACAGAGTTTG+AGG | 0.409289 | 1_3:-55675764 | Msa0126560:exon |
| AAGTGTGGTCTCTTTCTTGA+AGG | 0.415452 | 1_3:-55671944 | Msa0126560:CDS |
| ATCTAAGCTAACCTGGAATT+AGG | 0.417358 | 1_3:+55675274 | None:intergenic |
| TTCTTGAAGGAATCGAAGTC+AGG | 0.419195 | 1_3:-55671931 | Msa0126560:CDS |
| CAGACTCTCCGTTGTTTCCA+AGG | 0.431379 | 1_3:-55675683 | Msa0126560:CDS |
| ATGATCGACGCTATTGGAAC+TGG | 0.435698 | 1_3:-55675306 | Msa0126560:CDS |
| ATTCCAGACGGCGTCGGAAT+CGG | 0.451722 | 1_3:+55675645 | None:intergenic |
| GGTGGTTGGAGATTGAAATC+GGG | 0.460102 | 1_3:-55672039 | Msa0126560:CDS |
| TATGCAAGGGGTCTTGCGTC+TGG | 0.460282 | 1_3:-55671874 | Msa0126560:three_prime_UTR |
| ATGACGGAAATGAAACCTTC+CGG | 0.471950 | 1_3:+55675736 | None:intergenic |
| GTTACTTAATTGTCTTACTT+AGG | 0.474668 | 1_3:+55671908 | None:intergenic |
| CAAGAAGCTCAGCGACTTCA+GGG | 0.475210 | 1_3:+55672311 | None:intergenic |
| CGGCCTAGTGTGAGAAGCGA+TGG | 0.477390 | 1_3:-55672061 | Msa0126560:CDS |
| GGGGTGATGATCGACGCTAT+TGG | 0.479440 | 1_3:-55675312 | Msa0126560:CDS |
| GAGAGTCTGCCGGCGTCAGC+CGG | 0.494209 | 1_3:+55675697 | None:intergenic |
| AACATTCTATGAACTATGCA+AGG | 0.495194 | 1_3:-55671888 | Msa0126560:three_prime_UTR |
| TCGATCATCACCCCAATCAA+TGG | 0.519099 | 1_3:+55675321 | None:intergenic |
| GGCGGCAGAAAGGAAAGCCT+TGG | 0.522685 | 1_3:+55675666 | None:intergenic |
| TTCAAGATGATTGATGGCTA+TGG | 0.530465 | 1_3:-55672211 | Msa0126560:CDS |
| CACCCATCGCTTCTCACACT+AGG | 0.546742 | 1_3:+55672058 | None:intergenic |
| CGTCGGAATCGGCGGCAGAA+AGG | 0.549047 | 1_3:+55675656 | None:intergenic |
| GATCATTGTCGATGATGATA+GGG | 0.558501 | 1_3:+55675515 | None:intergenic |
| GGAAACAACGGAGAGTCTGC+CGG | 0.559684 | 1_3:+55675687 | None:intergenic |
| AGATCTCTTGCCATTGATTG+GGG | 0.560108 | 1_3:-55675331 | Msa0126560:CDS |
| TTTCAATTGGATAGAAAGAG+TGG | 0.567809 | 1_3:-55675379 | Msa0126560:CDS |
| GGGCAACATAACAGCGCAGT+AGG | 0.570300 | 1_3:-55672091 | Msa0126560:CDS |
| GTAGGAGCGTTGGCAAGTGA+AGG | 0.572663 | 1_3:+55675571 | None:intergenic |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 1_3:-55672053 | Msa0126560:CDS |
| CCAGACGGCGTCGGAATCGG+CGG | 0.580387 | 1_3:+55675648 | None:intergenic |
| ATGTTATCAATTTGTGTCGA+AGG | 0.584367 | 1_3:-55672163 | Msa0126560:CDS |
| CGCACAACTCCGGCTGACGC+CGG | 0.587266 | 1_3:-55675706 | Msa0126560:CDS |
| CATTCTCTCTCGCACAACTC+CGG | 0.587355 | 1_3:-55675716 | Msa0126560:CDS |
| CATCATCGACAATGATCAGA+AGG | 0.590425 | 1_3:-55675509 | Msa0126560:intron |
| GCAAGGGGTCTTGCGTCTGG+TGG | 0.592794 | 1_3:-55671871 | Msa0126560:three_prime_UTR |
| ACACAAATTGATAACATCAC+GGG | 0.595453 | 1_3:+55672169 | None:intergenic |
| ACATTCTATGAACTATGCAA+GGG | 0.601046 | 1_3:-55671887 | Msa0126560:three_prime_UTR |
| GACACAAATTGATAACATCA+CGG | 0.604792 | 1_3:+55672168 | None:intergenic |
| TTATCAATTTGTGTCGAAGG+TGG | 0.610252 | 1_3:-55672160 | Msa0126560:CDS |
| GTGGTTGGAGATTGAAATCG+GGG | 0.611248 | 1_3:-55672038 | Msa0126560:CDS |
| CGATGAAATGAGAATCAGAA+GGG | 0.619505 | 1_3:+55675614 | None:intergenic |
| GATGATTATAATTCGAAGTG+TGG | 0.621156 | 1_3:-55671959 | Msa0126560:CDS |
| TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1_3:-55672119 | Msa0126560:CDS |
| GAGTTTGAGGAATTGCCGGA+AGG | 0.634691 | 1_3:-55675751 | Msa0126560:CDS |
| TCGATGAAATGAGAATCAGA+AGG | 0.636176 | 1_3:+55675613 | None:intergenic |
| AGGGAGAAATTGATTCCAGA+CGG | 0.640505 | 1_3:+55675633 | None:intergenic |
| GGCCTAGTGTGAGAAGCGAT+GGG | 0.643186 | 1_3:-55672060 | Msa0126560:CDS |
| TGGATCCAAATGTGGAAGGT+GGG | 0.645556 | 1_3:-55672111 | Msa0126560:CDS |
| AAGGAAAGCCTTGGAAACAA+CGG | 0.647518 | 1_3:+55675675 | None:intergenic |
| AAATTGATTCCAGACGGCGT+CGG | 0.652221 | 1_3:+55675639 | None:intergenic |
| ACAGCGCAGTAGGATTGCAA+CGG | 0.659500 | 1_3:-55672081 | Msa0126560:CDS |
| TTGGATCCAAATGTGGAAGG+TGG | 0.663222 | 1_3:-55672112 | Msa0126560:CDS |
| CATTCTATGAACTATGCAAG+GGG | 0.668947 | 1_3:-55671886 | Msa0126560:three_prime_UTR |
| TGTTTGGATCCAAATGTGGA+AGG | 0.673961 | 1_3:-55672115 | Msa0126560:CDS |
| AGTTGTGCGAGAGAGAATGA+CGG | 0.683855 | 1_3:+55675720 | None:intergenic |
| CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 1_3:-55672057 | Msa0126560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTAAAAGATTTTGT+AGG | - | chr1_3:55672233-55672252 | Msa0126560:CDS | 10.0% |
| !!! | TTTAATAAATTAGATTTTGA+TGG | + | chr1_3:55673186-55673205 | None:intergenic | 10.0% |
| !! | AACTTAAATAAAATTGAAAT+TGG | + | chr1_3:55673572-55673591 | None:intergenic | 10.0% |
| !! | TTATTGTGATTTAATATATT+GGG | - | chr1_3:55675710-55675729 | Msa0126560:CDS | 10.0% |
| !! | AATATCTCTTATATTAACTT+TGG | - | chr1_3:55671965-55671984 | Msa0126560:CDS | 15.0% |
| !!! | TTCAAAAAAATGGATTTTTA+TGG | + | chr1_3:55672378-55672397 | None:intergenic | 15.0% |
| !!! | AACTCATTTTTTCAAAAAAA+TGG | + | chr1_3:55672388-55672407 | None:intergenic | 15.0% |
| !!! | TGAAAAAAGTGATTTTTTTA+AGG | - | chr1_3:55672552-55672571 | Msa0126560:intron | 15.0% |
| !!! | GAAAAAAGTGATTTTTTTAA+GGG | - | chr1_3:55672553-55672572 | Msa0126560:intron | 15.0% |
| !!! | TTTACATCATAAGATTTTAA+AGG | - | chr1_3:55672688-55672707 | Msa0126560:intron | 15.0% |
| !!! | TAAGATTTTAAAGGATTTTA+TGG | - | chr1_3:55672697-55672716 | Msa0126560:intron | 15.0% |
| !!! | CTTTTTAATTATGAAAAAGT+TGG | + | chr1_3:55673324-55673343 | None:intergenic | 15.0% |
| !! | ACTGTTAATGAAAATATATT+GGG | + | chr1_3:55673439-55673458 | None:intergenic | 15.0% |
| !! | AACTGTTAATGAAAATATAT+TGG | + | chr1_3:55673440-55673459 | None:intergenic | 15.0% |
| !!! | ACTAAATTTTGTATTCATAA+AGG | + | chr1_3:55673477-55673496 | None:intergenic | 15.0% |
| !! | ATTGAAAAATAAATAGGATT+TGG | + | chr1_3:55674044-55674063 | None:intergenic | 15.0% |
| !! | TGATACATTGAAAAATAAAT+AGG | + | chr1_3:55674050-55674069 | None:intergenic | 15.0% |
| !!! | CTATATTTGAAACTTAATTA+TGG | + | chr1_3:55674406-55674425 | None:intergenic | 15.0% |
| !! | AGACATAATAATAATAGTTA+AGG | + | chr1_3:55674889-55674908 | None:intergenic | 15.0% |
| !!! | TACATCTCTATTTTTTATTT+GGG | + | chr1_3:55675031-55675050 | None:intergenic | 15.0% |
| !!! | TTACATCTCTATTTTTTATT+TGG | + | chr1_3:55675032-55675051 | None:intergenic | 15.0% |
| !! | CTTATTGTGATTTAATATAT+TGG | - | chr1_3:55675709-55675728 | Msa0126560:CDS | 15.0% |
| !!! | TATTCTTCTCTTTTTTGTAA+CGG | - | chr1_3:55671940-55671959 | Msa0126560:CDS | 20.0% |
| !!! | AAAAGATTTTGTAGGATTTT+AGG | - | chr1_3:55672241-55672260 | Msa0126560:CDS | 20.0% |
| !!! | AAAGATTTTGTAGGATTTTA+GGG | - | chr1_3:55672242-55672261 | Msa0126560:CDS | 20.0% |
| !!! | ATCTATTTTTTTCAACAACA+AGG | + | chr1_3:55672433-55672452 | None:intergenic | 20.0% |
| !!! | TCATTTTTAAGTGTTTGTTT+AGG | + | chr1_3:55672535-55672554 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATCTGAAACAAA+CGG | - | chr1_3:55672594-55672613 | Msa0126560:intron | 20.0% |
| !! | AAAATCATGAAAGTCATTAA+GGG | + | chr1_3:55672621-55672640 | None:intergenic | 20.0% |
| !! | TAAAATCATGAAAGTCATTA+AGG | + | chr1_3:55672622-55672641 | None:intergenic | 20.0% |
| !!! | ATTTTCAATTTGGATTTCAA+TGG | - | chr1_3:55672655-55672674 | Msa0126560:intron | 20.0% |
| !! | ATGAAGACATAAGATTTATT+GGG | + | chr1_3:55673117-55673136 | None:intergenic | 20.0% |
| !!! | TTTTCTTGTTAAAATTTCAC+TGG | - | chr1_3:55673145-55673164 | Msa0126560:intron | 20.0% |
| !! | CAAAATCATTCAAATTTCAA+AGG | + | chr1_3:55673213-55673232 | None:intergenic | 20.0% |
| !! | ATCACTTAAAAAAAGTCTAA+TGG | + | chr1_3:55673240-55673259 | None:intergenic | 20.0% |
| !! | AGAAAAAATAGAAAACTTAG+GGG | + | chr1_3:55673382-55673401 | None:intergenic | 20.0% |
| !! | GAGAAAAAATAGAAAACTTA+GGG | + | chr1_3:55673383-55673402 | None:intergenic | 20.0% |
| !! | TGAGAAAAAATAGAAAACTT+AGG | + | chr1_3:55673384-55673403 | None:intergenic | 20.0% |
| !!! | AAATTTTGTATTCATAAAGG+CGG | + | chr1_3:55673474-55673493 | None:intergenic | 20.0% |
| !! | ATGAATACAAAATTTAGTTG+AGG | - | chr1_3:55673479-55673498 | Msa0126560:intron | 20.0% |
| !!! | TTTGAAACTTAATTATGGAA+GGG | + | chr1_3:55674401-55674420 | None:intergenic | 20.0% |
| !!! | ATTTGAAACTTAATTATGGA+AGG | + | chr1_3:55674402-55674421 | None:intergenic | 20.0% |
| !! | AGTAAATTTCAAAGAAAACA+TGG | + | chr1_3:55674768-55674787 | None:intergenic | 20.0% |
| !!! | TTTGAAATTTACTTTTGACT+TGG | - | chr1_3:55674775-55674794 | Msa0126560:intron | 20.0% |
| !! | AGCATATATAACTTATTAAC+TGG | - | chr1_3:55674920-55674939 | Msa0126560:intron | 20.0% |
| !! | GCATATATAACTTATTAACT+GGG | - | chr1_3:55674921-55674940 | Msa0126560:intron | 20.0% |
| !! | AGTTGCAAATATTAGAATAT+AGG | + | chr1_3:55675083-55675102 | None:intergenic | 20.0% |
| !! | AGAAGTTCAAATGAATATAA+AGG | - | chr1_3:55675439-55675458 | Msa0126560:intron | 20.0% |
| !! | TGATTTAATATATTGGGATT+GGG | - | chr1_3:55675716-55675735 | Msa0126560:CDS | 20.0% |
| !!! | AATGGATTTTTATGGATAGT+AGG | + | chr1_3:55672370-55672389 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | - | chr1_3:55672468-55672487 | Msa0126560:intron | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | - | chr1_3:55672469-55672488 | Msa0126560:intron | 25.0% |
| !! | TTGGATTTCAATGGATTTAA+AGG | - | chr1_3:55672664-55672683 | Msa0126560:intron | 25.0% |
| !! | TTTTTATGAGAGATAGAGAA+AGG | - | chr1_3:55672832-55672851 | Msa0126560:intron | 25.0% |
| !! | TTTTATGAGAGATAGAGAAA+GGG | - | chr1_3:55672833-55672852 | Msa0126560:intron | 25.0% |
| ! | CATGAAGACATAAGATTTAT+TGG | + | chr1_3:55673118-55673137 | None:intergenic | 25.0% |
| !!! | TAGATTTTGATGGATTTTGT+GGG | + | chr1_3:55673176-55673195 | None:intergenic | 25.0% |
| !!! | TTAGATTTTGATGGATTTTG+TGG | + | chr1_3:55673177-55673196 | None:intergenic | 25.0% |
| ! | GTCATTTAAAAAAAGTCTTG+AGG | + | chr1_3:55673282-55673301 | None:intergenic | 25.0% |
| !! | GTATTGGATTAAGATTTTGA+GGG | + | chr1_3:55673358-55673377 | None:intergenic | 25.0% |
| !! | TGTATTGGATTAAGATTTTG+AGG | + | chr1_3:55673359-55673378 | None:intergenic | 25.0% |
| ! | GTTAATGAAAATATATTGGG+TGG | + | chr1_3:55673436-55673455 | None:intergenic | 25.0% |
| ! | ATGGGAAATTCAATAATCAA+AGG | + | chr1_3:55673639-55673658 | None:intergenic | 25.0% |
| ! | AGTTATTGCTTCATTTACAT+AGG | - | chr1_3:55673993-55674012 | Msa0126560:intron | 25.0% |
| !!! | GAGCAGAGATTTTAAAAATT+TGG | + | chr1_3:55674078-55674097 | None:intergenic | 25.0% |
| ! | TAATAGACTATATCAAGATG+AGG | + | chr1_3:55674590-55674609 | None:intergenic | 25.0% |
| ! | TTTCAAAGAAAACATGGTAT+TGG | + | chr1_3:55674762-55674781 | None:intergenic | 25.0% |
| ! | ATATAACTTATTAACTGGGT+AGG | - | chr1_3:55674925-55674944 | Msa0126560:intron | 25.0% |
| ! | ATTCTAATATTTGCAACTGT+TGG | - | chr1_3:55675085-55675104 | Msa0126560:intron | 25.0% |
| !!! | TTTTTTGGCTTCATATTAGT+GGG | - | chr1_3:55675141-55675160 | Msa0126560:intron | 25.0% |
| !!! | AGACAATTTTAGTACTATCA+TGG | + | chr1_3:55675292-55675311 | None:intergenic | 25.0% |
| ! | TAGTACTAAAATTGTCTGTT+TGG | - | chr1_3:55675295-55675314 | Msa0126560:CDS | 25.0% |
| ! | TTTGAACTTCTTTATCTTCT+AGG | + | chr1_3:55675430-55675449 | None:intergenic | 25.0% |
| ! | GTTACTTAATTGTCTTACTT+AGG | + | chr1_3:55675521-55675540 | None:intergenic | 25.0% |
| ! | GTGATTTAATATATTGGGAT+TGG | - | chr1_3:55675715-55675734 | Msa0126560:CDS | 25.0% |
| ! | AAGCTATTGATAATAAGCCT+TGG | - | chr1_3:55672005-55672024 | Msa0126560:CDS | 30.0% |
| TGAAATTCAGAGCTTTCAAT+TGG | - | chr1_3:55672034-55672053 | Msa0126560:CDS | 30.0% | |
| TTTCAATTGGATAGAAAGAG+TGG | - | chr1_3:55672047-55672066 | Msa0126560:CDS | 30.0% | |
| ! | GTATTGGATGAGGATTTTAA+AGG | - | chr1_3:55672186-55672205 | Msa0126560:CDS | 30.0% |
| TAGGCAAACACAAATAACTT+CGG | + | chr1_3:55672351-55672370 | None:intergenic | 30.0% | |
| CCCTAAAATGAAAAGCTATT+AGG | + | chr1_3:55672472-55672491 | None:intergenic | 30.0% | |
| ! | CATGATTTTAAATGACTGTC+AGG | - | chr1_3:55672632-55672651 | Msa0126560:intron | 30.0% |
| TTTATGAGAGATAGAGAAAG+GGG | - | chr1_3:55672834-55672853 | Msa0126560:intron | 30.0% | |
| CAAAATTTAGTTGAGGCAAA+TGG | - | chr1_3:55673486-55673505 | Msa0126560:intron | 30.0% | |
| ATTGATACTAAAATCGAGGA+AGG | - | chr1_3:55673519-55673538 | Msa0126560:intron | 30.0% | |
| AATCTCAACACAACAATCAT+TGG | + | chr1_3:55673549-55673568 | None:intergenic | 30.0% | |
| ! | TTACAATTCTCCTCATTTTC+TGG | - | chr1_3:55673611-55673630 | Msa0126560:intron | 30.0% |
| ! | AAATTTGGGTTTGAAATCGA+GGG | + | chr1_3:55673681-55673700 | None:intergenic | 30.0% |
| ! | TAAATTTGGGTTTGAAATCG+AGG | + | chr1_3:55673682-55673701 | None:intergenic | 30.0% |
| ! | ACTGAACGTGCTTTAAATTT+GGG | + | chr1_3:55673695-55673714 | None:intergenic | 30.0% |
| TCATTAAAGATGAAGGATCT+TGG | + | chr1_3:55673970-55673989 | None:intergenic | 30.0% | |
| AACTGCATCATTAAAGATGA+AGG | + | chr1_3:55673977-55673996 | None:intergenic | 30.0% | |
| CAACTTGAATGTAATAAGCA+TGG | + | chr1_3:55674353-55674372 | None:intergenic | 30.0% | |
| ! | CAAGTTGAACACTATTATAC+TGG | - | chr1_3:55674496-55674515 | Msa0126560:intron | 30.0% |
| ATGATGTCAACAAAATGAGT+CGG | - | chr1_3:55674543-55674562 | Msa0126560:intron | 30.0% | |
| AATATTTGCAACTGTTGGAT+AGG | - | chr1_3:55675090-55675109 | Msa0126560:intron | 30.0% | |
| !!! | GTTTTTTGGCTTCATATTAG+TGG | - | chr1_3:55675140-55675159 | Msa0126560:intron | 30.0% |
| ! | ACACAAATTGATAACATCAC+GGG | + | chr1_3:55675260-55675279 | None:intergenic | 30.0% |
| ! | GACACAAATTGATAACATCA+CGG | + | chr1_3:55675261-55675280 | None:intergenic | 30.0% |
| ATGTTATCAATTTGTGTCGA+AGG | - | chr1_3:55675263-55675282 | Msa0126560:intron | 30.0% | |
| GATGATTATAATTCGAAGTG+TGG | - | chr1_3:55675467-55675486 | Msa0126560:intron | 30.0% | |
| AACATTCTATGAACTATGCA+AGG | - | chr1_3:55675538-55675557 | Msa0126560:CDS | 30.0% | |
| ACATTCTATGAACTATGCAA+GGG | - | chr1_3:55675539-55675558 | Msa0126560:CDS | 30.0% | |
| TAATATATTGGGATTGGGAT+TGG | - | chr1_3:55675721-55675740 | Msa0126560:CDS | 30.0% | |
| AATATATTGGGATTGGGATT+GGG | - | chr1_3:55675722-55675741 | Msa0126560:CDS | 30.0% | |
| CAAAAGAATGACAGAGTTTG+AGG | - | chr1_3:55671662-55671681 | Msa0126560:three_prime_UTR | 35.0% | |
| CGATGAAATGAGAATCAGAA+GGG | + | chr1_3:55671815-55671834 | None:intergenic | 35.0% | |
| TCGATGAAATGAGAATCAGA+AGG | + | chr1_3:55671816-55671835 | None:intergenic | 35.0% | |
| !!! | AGATACAGAGCTTTTTTGGT+AGG | + | chr1_3:55671876-55671895 | None:intergenic | 35.0% |
| !!! | AGCAAGATACAGAGCTTTTT+TGG | + | chr1_3:55671880-55671899 | None:intergenic | 35.0% |
| GATCATTGTCGATGATGATA+GGG | + | chr1_3:55671914-55671933 | None:intergenic | 35.0% | |
| TGATCATTGTCGATGATGAT+AGG | + | chr1_3:55671915-55671934 | None:intergenic | 35.0% | |
| TCTGAATTTCAACACATCCA+AGG | + | chr1_3:55672025-55672044 | None:intergenic | 35.0% | |
| ! | TAGATCTCTTGCCATTGATT+GGG | - | chr1_3:55672094-55672113 | Msa0126560:CDS | 35.0% |
| ATCTAAGCTAACCTGGAATT+AGG | + | chr1_3:55672155-55672174 | None:intergenic | 35.0% | |
| !! | TCCAGGTTAGCTTAGATATT+AGG | - | chr1_3:55672158-55672177 | Msa0126560:CDS | 35.0% |
| !! | CCAGGTTAGCTTAGATATTA+GGG | - | chr1_3:55672159-55672178 | Msa0126560:CDS | 35.0% |
| !! | CAGGTTAGCTTAGATATTAG+GGG | - | chr1_3:55672160-55672179 | Msa0126560:CDS | 35.0% |
| !! | AGGTTAGCTTAGATATTAGG+GGG | - | chr1_3:55672161-55672180 | Msa0126560:CDS | 35.0% |
| ! | GACTGTCAGGATTTTCAATT+TGG | - | chr1_3:55672645-55672664 | Msa0126560:intron | 35.0% |
| TTATGAGAGATAGAGAAAGG+GGG | - | chr1_3:55672835-55672854 | Msa0126560:intron | 35.0% | |
| ! | TAGAAAACTTAGGGGTGTAT+TGG | + | chr1_3:55673374-55673393 | None:intergenic | 35.0% |
| GGCTATTGATACTAAAATCG+AGG | - | chr1_3:55673515-55673534 | Msa0126560:intron | 35.0% | |
| ATCAAAGGAACCAGAAAATG+AGG | + | chr1_3:55673624-55673643 | None:intergenic | 35.0% | |
| ! | GACTGAACGTGCTTTAAATT+TGG | + | chr1_3:55673696-55673715 | None:intergenic | 35.0% |
| TCAAATATTTGTCCAAGCAC+CGG | + | chr1_3:55673722-55673741 | None:intergenic | 35.0% | |
| ACAAATATTTGATGTCCCTG+TGG | - | chr1_3:55673730-55673749 | Msa0126560:intron | 35.0% | |
| ! | GAAACACATTTTAAGCCACA+GGG | + | chr1_3:55673748-55673767 | None:intergenic | 35.0% |
| ! | AGAAACACATTTTAAGCCAC+AGG | + | chr1_3:55673749-55673768 | None:intergenic | 35.0% |
| CTTCCAGTGTTGTCAAATAT+TGG | - | chr1_3:55673777-55673796 | Msa0126560:intron | 35.0% | |
| TAGCCAATATTTGACAACAC+TGG | + | chr1_3:55673783-55673802 | None:intergenic | 35.0% | |
| ! | GTGTTGTCAAATATTGGCTA+TGG | - | chr1_3:55673783-55673802 | Msa0126560:intron | 35.0% |
| ! | TTGTCAAATATTGGCTATGG+TGG | - | chr1_3:55673786-55673805 | Msa0126560:intron | 35.0% |
| !!! | ATACTTTTTTCTTTGTGCCG+TGG | - | chr1_3:55673841-55673860 | Msa0126560:intron | 35.0% |
| AGATAGATGAGTGAATAGCA+TGG | + | chr1_3:55673922-55673941 | None:intergenic | 35.0% | |
| GCAATACCAAGGCTTAAAAA+AGG | + | chr1_3:55674136-55674155 | None:intergenic | 35.0% | |
| AACAATGTGTAGCAATACCA+AGG | + | chr1_3:55674147-55674166 | None:intergenic | 35.0% | |
| ATGAAGACTGATGACATTCA+TGG | - | chr1_3:55674315-55674334 | Msa0126560:intron | 35.0% | |
| TGGAAGGGATGTCAAAAAAT+GGG | + | chr1_3:55674386-55674405 | None:intergenic | 35.0% | |
| ATGGAAGGGATGTCAAAAAA+TGG | + | chr1_3:55674387-55674406 | None:intergenic | 35.0% | |
| ATATCAAGATGAGGACTACA+AGG | + | chr1_3:55674581-55674600 | None:intergenic | 35.0% | |
| !!! | CTGAGCTTCTTGTTGTTTTT+TGG | - | chr1_3:55675126-55675145 | Msa0126560:intron | 35.0% |
| !! | ATAAGCTGCATACTGATTTC+GGG | + | chr1_3:55675189-55675208 | None:intergenic | 35.0% |
| !! | GATAAGCTGCATACTGATTT+CGG | + | chr1_3:55675190-55675209 | None:intergenic | 35.0% |
| CTTGTGTTCAAGATGATTGA+TGG | - | chr1_3:55675209-55675228 | Msa0126560:intron | 35.0% | |
| ! | TTCAAGATGATTGATGGCTA+TGG | - | chr1_3:55675215-55675234 | Msa0126560:intron | 35.0% |
| TTATCAATTTGTGTCGAAGG+TGG | - | chr1_3:55675266-55675285 | Msa0126560:intron | 35.0% | |
| CATTCTATGAACTATGCAAG+GGG | - | chr1_3:55675540-55675559 | Msa0126560:CDS | 35.0% | |
| !! | TGCTTTAGAGAGAAACAGTT+TGG | + | chr1_3:55675625-55675644 | None:intergenic | 35.0% |
| !! | ACAACTTTTGTTGCTTGTCA+TGG | - | chr1_3:55675654-55675673 | Msa0126560:CDS | 35.0% |
| ! | ATGACGGAAATGAAACCTTC+CGG | + | chr1_3:55671693-55671712 | None:intergenic | 40.0% |
| AAGGAAAGCCTTGGAAACAA+CGG | + | chr1_3:55671754-55671773 | None:intergenic | 40.0% | |
| ! | AGGGAGAAATTGATTCCAGA+CGG | + | chr1_3:55671796-55671815 | None:intergenic | 40.0% |
| CATCATCGACAATGATCAGA+AGG | - | chr1_3:55671917-55671936 | Msa0126560:exon | 40.0% | |
| CTAGATCTCTTGCCATTGAT+TGG | - | chr1_3:55672093-55672112 | Msa0126560:CDS | 40.0% | |
| ! | AGATCTCTTGCCATTGATTG+GGG | - | chr1_3:55672095-55672114 | Msa0126560:CDS | 40.0% |
| GGATTTCTATGCCTAATTCC+AGG | - | chr1_3:55672141-55672160 | Msa0126560:CDS | 40.0% | |
| CCCTAATATCTAAGCTAACC+TGG | + | chr1_3:55672162-55672181 | None:intergenic | 40.0% | |
| !! | GGTTAGCTTAGATATTAGGG+GGG | - | chr1_3:55672162-55672181 | Msa0126560:CDS | 40.0% |
| ! | TAGATATTAGGGGGGTGTAT+TGG | - | chr1_3:55672170-55672189 | Msa0126560:CDS | 40.0% |
| TATGAGAGATAGAGAAAGGG+GGG | - | chr1_3:55672836-55672855 | Msa0126560:intron | 40.0% | |
| AGAGAGAGATGAAGAGAGAA+GGG | - | chr1_3:55672995-55673014 | Msa0126560:intron | 40.0% | |
| AAAAGAGAGGAGAGAGAGAA+GGG | - | chr1_3:55673033-55673052 | Msa0126560:intron | 40.0% | |
| GGAAAAGAGAGAAGGAAGAA+GGG | - | chr1_3:55673054-55673073 | Msa0126560:intron | 40.0% | |
| AGTTGAGGCAAATGGATAAG+TGG | - | chr1_3:55673494-55673513 | Msa0126560:intron | 40.0% | |
| ATAGCTACGTGGAGTAACAT+GGG | + | chr1_3:55673657-55673676 | None:intergenic | 40.0% | |
| TAAAGCACGTTCAGTCAAAC+CGG | - | chr1_3:55673700-55673719 | Msa0126560:intron | 40.0% | |
| TCACTTCTGCTAAGTATCAG+CGG | - | chr1_3:55673889-55673908 | Msa0126560:intron | 40.0% | |
| !! | ATGAAGGATCTTGGTGTTCA+AGG | + | chr1_3:55673961-55673980 | None:intergenic | 40.0% |
| TGTAATAAGCATGGCAGACA+AGG | + | chr1_3:55674344-55674363 | None:intergenic | 40.0% | |
| GGAAGGGATGTCAAAAAATG+GGG | + | chr1_3:55674385-55674404 | None:intergenic | 40.0% | |
| TTGAAATGCGCACATGTCTA+CGG | - | chr1_3:55674623-55674642 | Msa0126560:intron | 40.0% | |
| AACAAATGAACGTCTGAGTG+AGG | + | chr1_3:55674824-55674843 | None:intergenic | 40.0% | |
| ! | ACTCAGACGTTCATTTGTTG+AGG | - | chr1_3:55674825-55674844 | Msa0126560:intron | 40.0% |
| ACTGGGTAGGTCAAATTGTT+TGG | - | chr1_3:55674938-55674957 | Msa0126560:intron | 40.0% | |
| CTGGGTAGGTCAAATTGTTT+GGG | - | chr1_3:55674939-55674958 | Msa0126560:intron | 40.0% | |
| AGGTCAAATTGTTTGGGCTA+AGG | - | chr1_3:55674945-55674964 | Msa0126560:intron | 40.0% | |
| GGTCAAATTGTTTGGGCTAA+GGG | - | chr1_3:55674946-55674965 | Msa0126560:intron | 40.0% | |
| AAATTGTTTGGGCTAAGGGT+TGG | - | chr1_3:55674950-55674969 | Msa0126560:intron | 40.0% | |
| GATAACATCACGGGATAGTT+TGG | + | chr1_3:55675251-55675270 | None:intergenic | 40.0% | |
| TGTCTGTTTGGATCCAAATG+TGG | - | chr1_3:55675307-55675326 | Msa0126560:CDS | 40.0% | |
| TGTTTGGATCCAAATGTGGA+AGG | - | chr1_3:55675311-55675330 | Msa0126560:CDS | 40.0% | |
| AAGTGTGGTCTCTTTCTTGA+AGG | - | chr1_3:55675482-55675501 | Msa0126560:intron | 40.0% | |
| TTCTTGAAGGAATCGAAGTC+AGG | - | chr1_3:55675495-55675514 | Msa0126560:intron | 40.0% | |
| GACAGAGTTTGAGGAATTGC+CGG | - | chr1_3:55671671-55671690 | Msa0126560:three_prime_UTR | 45.0% | |
| AGTTGTGCGAGAGAGAATGA+CGG | + | chr1_3:55671709-55671728 | None:intergenic | 45.0% | |
| ! | AAATTGATTCCAGACGGCGT+CGG | + | chr1_3:55671790-55671809 | None:intergenic | 45.0% |
| !!! | AGCTTTTTTGGTAGGAGCGT+TGG | + | chr1_3:55671868-55671887 | None:intergenic | 45.0% |
| TCGATCATCACCCCAATCAA+TGG | + | chr1_3:55672108-55672127 | None:intergenic | 45.0% | |
| ATGATCGACGCTATTGGAAC+TGG | - | chr1_3:55672120-55672139 | Msa0126560:CDS | 45.0% | |
| AGAGAGAAGGGAGAAAAGAG+AGG | - | chr1_3:55672860-55672879 | Msa0126560:intron | 45.0% | |
| AGAAAAGAGAGGAGTGAGAG+AGG | - | chr1_3:55672871-55672890 | Msa0126560:intron | 45.0% | |
| GAAAAGAGAGGAGTGAGAGA+GGG | - | chr1_3:55672872-55672891 | Msa0126560:intron | 45.0% | |
| AGAGAGAAGGGAGAAAAGAG+AGG | - | chr1_3:55672860-55672879 | Msa0126560:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGAA+GGG | - | chr1_3:55672967-55672986 | Msa0126560:intron | 45.0% | |
| GAGAGAGAGATGAAGAGAGA+AGG | - | chr1_3:55672994-55673013 | Msa0126560:intron | 45.0% | |
| GAAAAGAGAGGAGAGAGAGA+AGG | - | chr1_3:55673032-55673051 | Msa0126560:intron | 45.0% | |
| GAGAGAAGGGAAAAGAGAGA+AGG | - | chr1_3:55673046-55673065 | Msa0126560:intron | 45.0% | |
| GGGAAAAGAGAGAAGGAAGA+AGG | - | chr1_3:55673053-55673072 | Msa0126560:intron | 45.0% | |
| CATAGCTACGTGGAGTAACA+TGG | + | chr1_3:55673658-55673677 | None:intergenic | 45.0% | |
| AAGTGATGTGCTATCGATGG+TGG | + | chr1_3:55673875-55673894 | None:intergenic | 45.0% | |
| CAGAAGTGATGTGCTATCGA+TGG | + | chr1_3:55673878-55673897 | None:intergenic | 45.0% | |
| !! | CTTGGTGTTCAAGGTGAACT+TGG | + | chr1_3:55673952-55673971 | None:intergenic | 45.0% |
| ATTTGGCTGTCGCGACAATT+AGG | + | chr1_3:55674027-55674046 | None:intergenic | 45.0% | |
| !!! | GCTGCTCCTTTTTTAAGCCT+TGG | - | chr1_3:55674127-55674146 | Msa0126560:intron | 45.0% |
| TGCTGAGTCCTTCATCAACA+AGG | - | chr1_3:55674266-55674285 | Msa0126560:intron | 45.0% | |
| ! | TCTGCTGTCCTTGTTGATGA+AGG | + | chr1_3:55674277-55674296 | None:intergenic | 45.0% |
| TCATCAACAAGGACAGCAGA+TGG | - | chr1_3:55674277-55674296 | Msa0126560:intron | 45.0% | |
| !! | AAATGAGTCGGCTTGTGTCT+AGG | - | chr1_3:55674555-55674574 | Msa0126560:intron | 45.0% |
| AGGTCTGACAGTAGATTGCT+TGG | + | chr1_3:55674804-55674823 | None:intergenic | 45.0% | |
| TTGGATCCAAATGTGGAAGG+TGG | - | chr1_3:55675314-55675333 | Msa0126560:CDS | 45.0% | |
| TGGATCCAAATGTGGAAGGT+GGG | - | chr1_3:55675315-55675334 | Msa0126560:CDS | 45.0% | |
| GGGTGGTTGGAGATTGAAAT+CGG | - | chr1_3:55675386-55675405 | Msa0126560:intron | 45.0% | |
| GGTGGTTGGAGATTGAAATC+GGG | - | chr1_3:55675387-55675406 | Msa0126560:intron | 45.0% | |
| GTGGTTGGAGATTGAAATCG+GGG | - | chr1_3:55675388-55675407 | Msa0126560:intron | 45.0% | |
| ATCGGGGAGTTCTTCAATTC+AGG | - | chr1_3:55675404-55675423 | Msa0126560:intron | 45.0% | |
| ATTGGGATTGGGATTGGGAT+TGG | - | chr1_3:55675727-55675746 | Msa0126560:CDS | 45.0% | |
| TTGGGATTGGGATTGGGATT+GGG | - | chr1_3:55675728-55675747 | Msa0126560:CDS | 45.0% | |
| ! | GGATTGGGATAGCTGAGTTT+TGG | - | chr1_3:55675743-55675762 | Msa0126560:CDS | 45.0% |
| GAGTTTGAGGAATTGCCGGA+AGG | - | chr1_3:55671675-55671694 | Msa0126560:three_prime_UTR | 50.0% | |
| CATTCTCTCTCGCACAACTC+CGG | - | chr1_3:55671710-55671729 | Msa0126560:three_prime_UTR | 50.0% | |
| ! | CAGACTCTCCGTTGTTTCCA+AGG | - | chr1_3:55671743-55671762 | Msa0126560:three_prime_UTR | 50.0% |
| ! | TTAGGGGGGTGTATTGGATG+AGG | - | chr1_3:55672176-55672195 | Msa0126560:CDS | 50.0% |
| AGAAAGGGGGGAAGAGAGAA+GGG | - | chr1_3:55672848-55672867 | Msa0126560:intron | 50.0% | |
| AGGGAGAAGAGAGAGAGAGA+AGG | - | chr1_3:55672891-55672910 | Msa0126560:intron | 50.0% | |
| GGGAGAAGAGAGAGAGAGAA+GGG | - | chr1_3:55672892-55672911 | Msa0126560:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr1_3:55672960-55672979 | Msa0126560:intron | 50.0% | |
| TGAAGAGAGAAGGGAGAGAG+AGG | - | chr1_3:55673004-55673023 | Msa0126560:intron | 50.0% | |
| AGAGAGGAGGGAGAAAAGAG+AGG | - | chr1_3:55673020-55673039 | Msa0126560:intron | 50.0% | |
| ! | AAATCGAGGGCATAGCTACG+TGG | + | chr1_3:55673668-55673687 | None:intergenic | 50.0% |
| TTAGCCACCACTAAACGCCA+CGG | + | chr1_3:55673814-55673833 | None:intergenic | 50.0% | |
| !! | GATGTGCTATCGATGGTGGA+TGG | + | chr1_3:55673871-55673890 | None:intergenic | 50.0% |
| AGGACAGCAGATGGTCTTTG+AGG | - | chr1_3:55674286-55674305 | Msa0126560:intron | 50.0% | |
| !! | GCATTGGTCTTCAGCTGCAA+GGG | + | chr1_3:55674677-55674696 | None:intergenic | 50.0% |
| !! | TGCATTGGTCTTCAGCTGCA+AGG | + | chr1_3:55674678-55674697 | None:intergenic | 50.0% |
| GACCAATGCAGTAGCTGACT+AGG | - | chr1_3:55674688-55674707 | Msa0126560:intron | 50.0% | |
| GTAAGATGCAGTGCATCTGC+GGG | + | chr1_3:55674740-55674759 | None:intergenic | 50.0% | |
| GGTAAGATGCAGTGCATCTG+CGG | + | chr1_3:55674741-55674760 | None:intergenic | 50.0% | |
| GTATCTGTCCTTAGCAGCTG+TGG | - | chr1_3:55674852-55674871 | Msa0126560:intron | 50.0% | |
| TTCACTAGCCACAGCTGCTA+AGG | + | chr1_3:55674863-55674882 | None:intergenic | 50.0% | |
| CAAGAAGCTCAGCGACTTCA+GGG | + | chr1_3:55675118-55675137 | None:intergenic | 50.0% | |
| ACAAGAAGCTCAGCGACTTC+AGG | + | chr1_3:55675119-55675138 | None:intergenic | 50.0% | |
| TGTTGCCCACCTTCCACATT+TGG | + | chr1_3:55675323-55675342 | None:intergenic | 50.0% | |
| ACAGCGCAGTAGGATTGCAA+CGG | - | chr1_3:55675345-55675364 | Msa0126560:CDS | 50.0% | |
| GGAAACAACGGAGAGTCTGC+CGG | + | chr1_3:55671742-55671761 | None:intergenic | 55.0% | |
| ! | ATTCCAGACGGCGTCGGAAT+CGG | + | chr1_3:55671784-55671803 | None:intergenic | 55.0% |
| !! | GTAGGAGCGTTGGCAAGTGA+AGG | + | chr1_3:55671858-55671877 | None:intergenic | 55.0% |
| GGGGTGATGATCGACGCTAT+TGG | - | chr1_3:55672114-55672133 | Msa0126560:CDS | 55.0% | |
| GAGAAAGGGGGGAAGAGAGA+AGG | - | chr1_3:55672847-55672866 | Msa0126560:intron | 55.0% | |
| AGAGAGAAGGGAGAGAGAGG+AGG | - | chr1_3:55673007-55673026 | Msa0126560:intron | 55.0% | |
| GAGAGAAGGGAGAGAGAGGA+GGG | - | chr1_3:55673008-55673027 | Msa0126560:intron | 55.0% | |
| CGTTCAGTCAAACCGGTGCT+TGG | - | chr1_3:55673707-55673726 | Msa0126560:intron | 55.0% | |
| GGTCTTCAGCTGCAAGGGTA+AGG | + | chr1_3:55674672-55674691 | None:intergenic | 55.0% | |
| GGCCTAGTCAGCTACTGCAT+TGG | + | chr1_3:55674693-55674712 | None:intergenic | 55.0% | |
| TAGGCCACTTGCGTAGACAC+TGG | - | chr1_3:55674707-55674726 | Msa0126560:intron | 55.0% | |
| GTGTCCAGTGTCTACGCAAG+TGG | + | chr1_3:55674714-55674733 | None:intergenic | 55.0% | |
| GGGCAACATAACAGCGCAGT+AGG | - | chr1_3:55675335-55675354 | Msa0126560:CDS | 55.0% | |
| GGCCTAGTGTGAGAAGCGAT+GGG | - | chr1_3:55675366-55675385 | Msa0126560:CDS | 55.0% | |
| CACCCATCGCTTCTCACACT+AGG | + | chr1_3:55675371-55675390 | None:intergenic | 55.0% | |
| CTAGTGTGAGAAGCGATGGG+TGG | - | chr1_3:55675369-55675388 | Msa0126560:CDS | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | chr1_3:55675373-55675392 | Msa0126560:CDS | 55.0% | |
| TATGCAAGGGGTCTTGCGTC+TGG | - | chr1_3:55675552-55675571 | Msa0126560:CDS | 55.0% | |
| GGCGGCAGAAAGGAAAGCCT+TGG | + | chr1_3:55671763-55671782 | None:intergenic | 60.0% | |
| ! | TATTGGCTATGGTGGCGCCG+TGG | - | chr1_3:55673794-55673813 | Msa0126560:intron | 60.0% |
| !! | CGATGGTGGATGGCAGACCA+CGG | + | chr1_3:55673861-55673880 | None:intergenic | 60.0% |
| CGGCCTAGTGTGAGAAGCGA+TGG | - | chr1_3:55675365-55675384 | Msa0126560:CDS | 60.0% | |
| CGTCGGAATCGGCGGCAGAA+AGG | + | chr1_3:55671773-55671792 | None:intergenic | 65.0% | |
| GCAAGGGGTCTTGCGTCTGG+TGG | - | chr1_3:55675555-55675574 | Msa0126560:CDS | 65.0% | |
| CGCACAACTCCGGCTGACGC+CGG | - | chr1_3:55671720-55671739 | Msa0126560:three_prime_UTR | 70.0% | |
| GAGAGTCTGCCGGCGTCAGC+CGG | + | chr1_3:55671732-55671751 | None:intergenic | 70.0% | |
| ! | CCAGACGGCGTCGGAATCGG+CGG | + | chr1_3:55671781-55671800 | None:intergenic | 70.0% |
| GGTGGCGCCGTGGCGTTTAG+TGG | - | chr1_3:55673804-55673823 | Msa0126560:intron | 70.0% | |
| GGCGCCGTGGCGTTTAGTGG+TGG | - | chr1_3:55673807-55673826 | Msa0126560:intron | 70.0% | |
| !! | CCGCCGATTCCGACGCCGTC+TGG | - | chr1_3:55671778-55671797 | Msa0126560:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55671623 | 55675825 | 55671623 | ID=Msa0126560;Name=Msa0126560 |
| chr1_3 | mRNA | 55671623 | 55675825 | 55671623 | ID=Msa0126560-mRNA-1;Parent=Msa0126560;Name=Msa0126560-mRNA-1;_AED=0.43;_eAED=0.43;_QI=46|1|1|1|1|1|3|299|267 |
| chr1_3 | exon | 55671623 | 55672336 | 55671623 | ID=Msa0126560-mRNA-1:exon:17374;Parent=Msa0126560-mRNA-1 |
| chr1_3 | exon | 55675286 | 55675404 | 55675286 | ID=Msa0126560-mRNA-1:exon:17373;Parent=Msa0126560-mRNA-1 |
| chr1_3 | exon | 55675510 | 55675825 | 55675510 | ID=Msa0126560-mRNA-1:exon:17372;Parent=Msa0126560-mRNA-1 |
| chr1_3 | five_prime_UTR | 55675780 | 55675825 | 55675780 | ID=Msa0126560-mRNA-1:five_prime_utr;Parent=Msa0126560-mRNA-1 |
| chr1_3 | CDS | 55675510 | 55675779 | 55675510 | ID=Msa0126560-mRNA-1:cds;Parent=Msa0126560-mRNA-1 |
| chr1_3 | CDS | 55675286 | 55675404 | 55675286 | ID=Msa0126560-mRNA-1:cds;Parent=Msa0126560-mRNA-1 |
| chr1_3 | CDS | 55671922 | 55672336 | 55671922 | ID=Msa0126560-mRNA-1:cds;Parent=Msa0126560-mRNA-1 |
| chr1_3 | three_prime_UTR | 55671623 | 55671921 | 55671623 | ID=Msa0126560-mRNA-1:three_prime_utr;Parent=Msa0126560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
