AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126560 MtrunA17_Chr1g0189621 86.567 268 31 2 1 267 1 264 3.38e-168 465
Msa0126560 MtrunA17_Chr1g0189611 84.074 270 35 5 1 267 1 265 1.12e-158 441
Msa0126560 MtrunA17_Chr1g0189721 75.556 270 58 4 1 267 1 265 1.47e-144 405
Msa0126560 MtrunA17_Chr1g0203281 71.223 278 63 5 1 267 1 272 1.38e-131 373
Msa0126560 MtrunA17_Chr1g0189821 70.149 268 77 2 1 267 1 266 1.48e-130 370
Msa0126560 MtrunA17_Chr1g0189751 72.222 270 67 4 1 267 1 265 1.08e-124 357
Msa0126560 MtrunA17_Chr1g0189671 66.426 277 78 5 1 267 1 272 2.82e-122 350
Msa0126560 MtrunA17_Chr1g0190071 65.724 283 79 4 1 267 1 281 3.01e-121 347
Msa0126560 MtrunA17_Chr1g0189661 67.626 278 79 4 1 267 1 278 4.96e-117 337
Msa0126560 MtrunA17_Chr1g0189641 62.950 278 87 5 1 267 1 273 7.53e-114 328
Msa0126560 MtrunA17_Chr1g0203331 68.595 242 57 4 20 247 5 241 3.50e-109 315
Msa0126560 MtrunA17_Chr1g0157451 61.131 283 94 5 1 267 1 283 6.20e-108 314
Msa0126560 MtrunA17_Chr3g0078331 58.804 301 85 5 4 267 17 315 4.41e-107 313
Msa0126560 MtrunA17_Chr3g0097191 60.377 265 97 3 4 267 10 267 1.14e-101 297
Msa0126560 MtrunA17_Chr1g0189711 59.928 277 99 7 1 267 1 275 1.76e-96 284
Msa0126560 MtrunA17_Chr3g0095261 55.124 283 99 5 4 267 10 283 1.06e-90 270
Msa0126560 MtrunA17_Chr7g0260801 56.777 273 101 7 1 267 13 274 3.96e-90 268
Msa0126560 MtrunA17_Chr1g0189781 52.920 274 115 7 2 267 6 273 6.19e-86 257
Msa0126560 MtrunA17_Chr1g0189701 53.952 291 105 9 1 267 32 317 7.39e-85 256
Msa0126560 MtrunA17_Chr1g0189541 72.254 173 42 4 96 267 17 184 2.53e-82 245
Msa0126560 MtrunA17_Chr1g0189591 45.667 300 125 7 2 267 11 306 8.62e-73 225
Msa0126560 MtrunA17_Chr1g0189651 62.983 181 55 5 88 267 10 179 3.79e-62 193
Msa0126560 MtrunA17_Chr7g0272091 44.366 284 135 10 2 267 5 283 2.14e-61 195
Msa0126560 MtrunA17_Chr2g0317291 54.802 177 75 3 91 264 38 212 5.22e-55 177
Msa0126560 MtrunA17_Chr1g0192371 38.489 278 157 7 2 267 6 281 2.52e-53 174
Msa0126560 MtrunA17_Chr1g0189771 54.545 165 67 3 5 164 13 174 1.05e-52 169
Msa0126560 MtrunA17_Chr7g0272101 38.433 268 150 9 4 267 1 257 4.16e-47 157
Msa0126560 MtrunA17_Chr1g0189571 45.411 207 80 6 90 267 3 205 1.11e-45 152
Msa0126560 MtrunA17_Chr1g0188311 58.088 136 36 3 131 247 22 155 4.51e-43 144
Msa0126560 MtrunA17_Chr4g0010881 36.466 266 138 8 4 267 1 237 7.53e-43 146
Msa0126560 MtrunA17_Chr2g0300961 61.832 131 40 4 1 130 1 122 2.25e-41 139
Msa0126560 MtrunA17_Chr7g0260811 58.824 119 40 4 60 175 38 150 1.87e-31 114
Msa0126560 MtrunA17_Chr3g0102081 57.282 103 41 2 130 231 23 123 3.46e-30 109
Msa0126560 MtrunA17_Chr1g0189531 67.778 90 26 1 1 90 64 150 2.04e-29 110
Msa0126560 MtrunA17_Chr7g0265551 27.106 273 177 7 6 266 93 355 2.35e-29 114
Msa0126560 MtrunA17_Chr3g0143881 48.760 121 47 4 148 267 1 107 6.80e-27 100
Msa0126560 MtrunA17_Chr1g0189631 54.128 109 33 3 148 241 1 107 6.26e-25 95.9
Msa0126560 MtrunA17_Chr6g0472801 30.370 270 171 9 2 267 20 276 1.43e-23 96.7
Msa0126560 MtrunA17_Chr4g0057281 30.224 268 165 10 6 266 21 273 3.33e-21 90.5
Msa0126560 MtrunA17_Chr8g0350401 27.481 262 176 7 6 262 24 276 5.88e-21 89.7
Msa0126560 MtrunA17_Chr1g0203751 28.464 267 178 8 2 266 26 281 3.04e-20 87.8
Msa0126560 MtrunA17_Chr5g0397981 28.137 263 176 8 6 266 37 288 1.64e-19 85.9
Msa0126560 MtrunA17_Chr1g0189761 66.071 56 19 0 212 267 39 94 4.85e-18 77.0
Msa0126560 MtrunA17_Chr4g0043591 26.087 207 130 6 66 267 102 290 1.83e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126560 AT2G02360.1 42.322 267 138 6 4 266 14 268 2.28e-68 213
Msa0126560 AT1G80110.1 45.038 262 132 4 7 266 4 255 3.38e-67 209
Msa0126560 AT2G02340.1 38.828 273 156 7 1 266 33 301 3.70e-57 185
Msa0126560 AT2G02240.1 40.075 267 145 6 4 266 61 316 1.69e-55 181
Msa0126560 AT2G02250.1 39.925 268 145 6 4 266 47 303 2.73e-53 175
Msa0126560 AT1G09155.1 39.929 283 143 9 7 267 3 280 6.26e-53 174
Msa0126560 AT2G02230.1 34.194 310 154 8 2 267 30 333 3.45e-51 171
Msa0126560 AT1G56250.1 39.576 283 144 9 7 267 4 281 4.98e-49 164
Msa0126560 AT1G56240.1 38.298 282 147 9 7 266 4 280 5.30e-47 158
Msa0126560 AT2G02310.1 35.075 268 162 5 4 267 45 304 5.34e-47 159
Msa0126560 AT2G02320.1 37.407 270 147 10 6 266 42 298 5.57e-47 159
Msa0126560 AT2G02350.2 36.296 270 158 8 2 266 22 282 6.39e-46 156
Msa0126560 AT2G02300.1 35.662 272 143 9 4 267 34 281 4.41e-40 140
Msa0126560 AT5G24560.1 45.517 145 71 2 4 147 3 140 6.01e-36 127
Msa0126560 AT3G53000.1 29.242 277 165 8 6 266 23 284 1.58e-32 121
Msa0126560 AT2G02350.1 33.929 168 103 6 104 266 1 165 1.07e-20 87.0
Msa0126560 AT3G61060.1 24.335 263 189 6 6 267 27 280 2.96e-19 85.5
Msa0126560 AT3G61060.2 23.574 263 192 5 6 267 27 281 1.02e-18 84.0
Msa0126560 AT1G63090.1 28.030 264 175 8 6 266 28 279 1.47e-18 83.6
Msa0126560 AT1G12710.1 26.616 263 180 7 6 266 30 281 1.28e-17 80.9
Msa0126560 AT5G52120.1 31.977 172 108 4 1 167 18 185 3.75e-17 79.7
Msa0126560 AT1G12710.2 24.000 300 183 9 6 266 30 323 5.79e-13 68.2
Msa0126560 AT4G19850.3 28.022 182 98 8 97 267 59 218 9.07e-12 63.5
Msa0126560 AT4G19850.1 28.962 183 95 9 97 267 17 176 9.55e-12 62.8

Find 83 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAACTTCTTTATCTTCT+AGG 0.116706 1_3:+55671999 None:intergenic
CTTATTGTGATTTAATATAT+TGG 0.195796 1_3:-55671717 Msa0126560:three_prime_UTR
GATAAGCTGCATACTGATTT+CGG 0.259560 1_3:+55672239 None:intergenic
TGTTGCCCACCTTCCACATT+TGG 0.295277 1_3:+55672106 None:intergenic
TTATTGTGATTTAATATATT+GGG 0.310280 1_3:-55671716 Msa0126560:three_prime_UTR
GGATTGGGATAGCTGAGTTT+TGG 0.310973 1_3:-55671683 Msa0126560:three_prime_UTR
ATCGGGGAGTTCTTCAATTC+AGG 0.312491 1_3:-55672022 Msa0126560:CDS
ATAAGCTGCATACTGATTTC+GGG 0.316082 1_3:+55672240 None:intergenic
GATAACATCACGGGATAGTT+TGG 0.324234 1_3:+55672178 None:intergenic
TAGATCTCTTGCCATTGATT+GGG 0.325854 1_3:-55675332 Msa0126560:CDS
CTAGATCTCTTGCCATTGAT+TGG 0.334447 1_3:-55675333 Msa0126560:CDS
TTGGGATTGGGATTGGGATT+GGG 0.334695 1_3:-55671698 Msa0126560:three_prime_UTR
ATTGGGATTGGGATTGGGAT+TGG 0.338450 1_3:-55671699 Msa0126560:three_prime_UTR
TGATCATTGTCGATGATGAT+AGG 0.340168 1_3:+55675514 None:intergenic
CCGCCGATTCCGACGCCGTC+TGG 0.340798 1_3:-55675648 Msa0126560:CDS
TGCTTTAGAGAGAAACAGTT+TGG 0.344205 1_3:+55671804 None:intergenic
ACAAGAAGCTCAGCGACTTC+AGG 0.347960 1_3:+55672310 None:intergenic
TAATATATTGGGATTGGGAT+TGG 0.351282 1_3:-55671705 Msa0126560:three_prime_UTR
CTTGTGTTCAAGATGATTGA+TGG 0.366427 1_3:-55672217 Msa0126560:CDS
GTGATTTAATATATTGGGAT+TGG 0.370051 1_3:-55671711 Msa0126560:three_prime_UTR
AGAAGTTCAAATGAATATAA+AGG 0.377032 1_3:-55671987 Msa0126560:CDS
GACAGAGTTTGAGGAATTGC+CGG 0.379323 1_3:-55675755 Msa0126560:CDS
GGATTTCTATGCCTAATTCC+AGG 0.380639 1_3:-55675285 Msa0126560:intron
TGATTTAATATATTGGGATT+GGG 0.389928 1_3:-55671710 Msa0126560:three_prime_UTR
AATATATTGGGATTGGGATT+GGG 0.393616 1_3:-55671704 Msa0126560:three_prime_UTR
TGAAATTCAGAGCTTTCAAT+TGG 0.394466 1_3:-55675392 Msa0126560:intron
TAGTACTAAAATTGTCTGTT+TGG 0.397688 1_3:-55672131 Msa0126560:CDS
GGGTGGTTGGAGATTGAAAT+CGG 0.403576 1_3:-55672040 Msa0126560:CDS
CAAAAGAATGACAGAGTTTG+AGG 0.409289 1_3:-55675764 Msa0126560:exon
AAGTGTGGTCTCTTTCTTGA+AGG 0.415452 1_3:-55671944 Msa0126560:CDS
ATCTAAGCTAACCTGGAATT+AGG 0.417358 1_3:+55675274 None:intergenic
TTCTTGAAGGAATCGAAGTC+AGG 0.419195 1_3:-55671931 Msa0126560:CDS
CAGACTCTCCGTTGTTTCCA+AGG 0.431379 1_3:-55675683 Msa0126560:CDS
ATGATCGACGCTATTGGAAC+TGG 0.435698 1_3:-55675306 Msa0126560:CDS
ATTCCAGACGGCGTCGGAAT+CGG 0.451722 1_3:+55675645 None:intergenic
GGTGGTTGGAGATTGAAATC+GGG 0.460102 1_3:-55672039 Msa0126560:CDS
TATGCAAGGGGTCTTGCGTC+TGG 0.460282 1_3:-55671874 Msa0126560:three_prime_UTR
ATGACGGAAATGAAACCTTC+CGG 0.471950 1_3:+55675736 None:intergenic
GTTACTTAATTGTCTTACTT+AGG 0.474668 1_3:+55671908 None:intergenic
CAAGAAGCTCAGCGACTTCA+GGG 0.475210 1_3:+55672311 None:intergenic
CGGCCTAGTGTGAGAAGCGA+TGG 0.477390 1_3:-55672061 Msa0126560:CDS
GGGGTGATGATCGACGCTAT+TGG 0.479440 1_3:-55675312 Msa0126560:CDS
GAGAGTCTGCCGGCGTCAGC+CGG 0.494209 1_3:+55675697 None:intergenic
AACATTCTATGAACTATGCA+AGG 0.495194 1_3:-55671888 Msa0126560:three_prime_UTR
TCGATCATCACCCCAATCAA+TGG 0.519099 1_3:+55675321 None:intergenic
GGCGGCAGAAAGGAAAGCCT+TGG 0.522685 1_3:+55675666 None:intergenic
TTCAAGATGATTGATGGCTA+TGG 0.530465 1_3:-55672211 Msa0126560:CDS
CACCCATCGCTTCTCACACT+AGG 0.546742 1_3:+55672058 None:intergenic
CGTCGGAATCGGCGGCAGAA+AGG 0.549047 1_3:+55675656 None:intergenic
GATCATTGTCGATGATGATA+GGG 0.558501 1_3:+55675515 None:intergenic
GGAAACAACGGAGAGTCTGC+CGG 0.559684 1_3:+55675687 None:intergenic
AGATCTCTTGCCATTGATTG+GGG 0.560108 1_3:-55675331 Msa0126560:CDS
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1_3:-55675379 Msa0126560:CDS
GGGCAACATAACAGCGCAGT+AGG 0.570300 1_3:-55672091 Msa0126560:CDS
GTAGGAGCGTTGGCAAGTGA+AGG 0.572663 1_3:+55675571 None:intergenic
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1_3:-55672053 Msa0126560:CDS
CCAGACGGCGTCGGAATCGG+CGG 0.580387 1_3:+55675648 None:intergenic
ATGTTATCAATTTGTGTCGA+AGG 0.584367 1_3:-55672163 Msa0126560:CDS
CGCACAACTCCGGCTGACGC+CGG 0.587266 1_3:-55675706 Msa0126560:CDS
CATTCTCTCTCGCACAACTC+CGG 0.587355 1_3:-55675716 Msa0126560:CDS
CATCATCGACAATGATCAGA+AGG 0.590425 1_3:-55675509 Msa0126560:intron
GCAAGGGGTCTTGCGTCTGG+TGG 0.592794 1_3:-55671871 Msa0126560:three_prime_UTR
ACACAAATTGATAACATCAC+GGG 0.595453 1_3:+55672169 None:intergenic
ACATTCTATGAACTATGCAA+GGG 0.601046 1_3:-55671887 Msa0126560:three_prime_UTR
GACACAAATTGATAACATCA+CGG 0.604792 1_3:+55672168 None:intergenic
TTATCAATTTGTGTCGAAGG+TGG 0.610252 1_3:-55672160 Msa0126560:CDS
GTGGTTGGAGATTGAAATCG+GGG 0.611248 1_3:-55672038 Msa0126560:CDS
CGATGAAATGAGAATCAGAA+GGG 0.619505 1_3:+55675614 None:intergenic
GATGATTATAATTCGAAGTG+TGG 0.621156 1_3:-55671959 Msa0126560:CDS
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1_3:-55672119 Msa0126560:CDS
GAGTTTGAGGAATTGCCGGA+AGG 0.634691 1_3:-55675751 Msa0126560:CDS
TCGATGAAATGAGAATCAGA+AGG 0.636176 1_3:+55675613 None:intergenic
AGGGAGAAATTGATTCCAGA+CGG 0.640505 1_3:+55675633 None:intergenic
GGCCTAGTGTGAGAAGCGAT+GGG 0.643186 1_3:-55672060 Msa0126560:CDS
TGGATCCAAATGTGGAAGGT+GGG 0.645556 1_3:-55672111 Msa0126560:CDS
AAGGAAAGCCTTGGAAACAA+CGG 0.647518 1_3:+55675675 None:intergenic
AAATTGATTCCAGACGGCGT+CGG 0.652221 1_3:+55675639 None:intergenic
ACAGCGCAGTAGGATTGCAA+CGG 0.659500 1_3:-55672081 Msa0126560:CDS
TTGGATCCAAATGTGGAAGG+TGG 0.663222 1_3:-55672112 Msa0126560:CDS
CATTCTATGAACTATGCAAG+GGG 0.668947 1_3:-55671886 Msa0126560:three_prime_UTR
TGTTTGGATCCAAATGTGGA+AGG 0.673961 1_3:-55672115 Msa0126560:CDS
AGTTGTGCGAGAGAGAATGA+CGG 0.683855 1_3:+55675720 None:intergenic
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1_3:-55672057 Msa0126560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTAAAAGATTTTGT+AGG - chr1_3:55672233-55672252 Msa0126560:CDS 10.0%
!!! TTTAATAAATTAGATTTTGA+TGG + chr1_3:55673186-55673205 None:intergenic 10.0%
!! AACTTAAATAAAATTGAAAT+TGG + chr1_3:55673572-55673591 None:intergenic 10.0%
!! TTATTGTGATTTAATATATT+GGG - chr1_3:55675710-55675729 Msa0126560:CDS 10.0%
!! AATATCTCTTATATTAACTT+TGG - chr1_3:55671965-55671984 Msa0126560:CDS 15.0%
!!! TTCAAAAAAATGGATTTTTA+TGG + chr1_3:55672378-55672397 None:intergenic 15.0%
!!! AACTCATTTTTTCAAAAAAA+TGG + chr1_3:55672388-55672407 None:intergenic 15.0%
!!! TGAAAAAAGTGATTTTTTTA+AGG - chr1_3:55672552-55672571 Msa0126560:intron 15.0%
!!! GAAAAAAGTGATTTTTTTAA+GGG - chr1_3:55672553-55672572 Msa0126560:intron 15.0%
!!! TTTACATCATAAGATTTTAA+AGG - chr1_3:55672688-55672707 Msa0126560:intron 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG - chr1_3:55672697-55672716 Msa0126560:intron 15.0%
!!! CTTTTTAATTATGAAAAAGT+TGG + chr1_3:55673324-55673343 None:intergenic 15.0%
!! ACTGTTAATGAAAATATATT+GGG + chr1_3:55673439-55673458 None:intergenic 15.0%
!! AACTGTTAATGAAAATATAT+TGG + chr1_3:55673440-55673459 None:intergenic 15.0%
!!! ACTAAATTTTGTATTCATAA+AGG + chr1_3:55673477-55673496 None:intergenic 15.0%
!! ATTGAAAAATAAATAGGATT+TGG + chr1_3:55674044-55674063 None:intergenic 15.0%
!! TGATACATTGAAAAATAAAT+AGG + chr1_3:55674050-55674069 None:intergenic 15.0%
!!! CTATATTTGAAACTTAATTA+TGG + chr1_3:55674406-55674425 None:intergenic 15.0%
!! AGACATAATAATAATAGTTA+AGG + chr1_3:55674889-55674908 None:intergenic 15.0%
!!! TACATCTCTATTTTTTATTT+GGG + chr1_3:55675031-55675050 None:intergenic 15.0%
!!! TTACATCTCTATTTTTTATT+TGG + chr1_3:55675032-55675051 None:intergenic 15.0%
!! CTTATTGTGATTTAATATAT+TGG - chr1_3:55675709-55675728 Msa0126560:CDS 15.0%
!!! TATTCTTCTCTTTTTTGTAA+CGG - chr1_3:55671940-55671959 Msa0126560:CDS 20.0%
!!! AAAAGATTTTGTAGGATTTT+AGG - chr1_3:55672241-55672260 Msa0126560:CDS 20.0%
!!! AAAGATTTTGTAGGATTTTA+GGG - chr1_3:55672242-55672261 Msa0126560:CDS 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG + chr1_3:55672433-55672452 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + chr1_3:55672535-55672554 None:intergenic 20.0%
!!! TGAAAAAAATCTGAAACAAA+CGG - chr1_3:55672594-55672613 Msa0126560:intron 20.0%
!! AAAATCATGAAAGTCATTAA+GGG + chr1_3:55672621-55672640 None:intergenic 20.0%
!! TAAAATCATGAAAGTCATTA+AGG + chr1_3:55672622-55672641 None:intergenic 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG - chr1_3:55672655-55672674 Msa0126560:intron 20.0%
!! ATGAAGACATAAGATTTATT+GGG + chr1_3:55673117-55673136 None:intergenic 20.0%
!!! TTTTCTTGTTAAAATTTCAC+TGG - chr1_3:55673145-55673164 Msa0126560:intron 20.0%
!! CAAAATCATTCAAATTTCAA+AGG + chr1_3:55673213-55673232 None:intergenic 20.0%
!! ATCACTTAAAAAAAGTCTAA+TGG + chr1_3:55673240-55673259 None:intergenic 20.0%
!! AGAAAAAATAGAAAACTTAG+GGG + chr1_3:55673382-55673401 None:intergenic 20.0%
!! GAGAAAAAATAGAAAACTTA+GGG + chr1_3:55673383-55673402 None:intergenic 20.0%
!! TGAGAAAAAATAGAAAACTT+AGG + chr1_3:55673384-55673403 None:intergenic 20.0%
!!! AAATTTTGTATTCATAAAGG+CGG + chr1_3:55673474-55673493 None:intergenic 20.0%
!! ATGAATACAAAATTTAGTTG+AGG - chr1_3:55673479-55673498 Msa0126560:intron 20.0%
!!! TTTGAAACTTAATTATGGAA+GGG + chr1_3:55674401-55674420 None:intergenic 20.0%
!!! ATTTGAAACTTAATTATGGA+AGG + chr1_3:55674402-55674421 None:intergenic 20.0%
!! AGTAAATTTCAAAGAAAACA+TGG + chr1_3:55674768-55674787 None:intergenic 20.0%
!!! TTTGAAATTTACTTTTGACT+TGG - chr1_3:55674775-55674794 Msa0126560:intron 20.0%
!! AGCATATATAACTTATTAAC+TGG - chr1_3:55674920-55674939 Msa0126560:intron 20.0%
!! GCATATATAACTTATTAACT+GGG - chr1_3:55674921-55674940 Msa0126560:intron 20.0%
!! AGTTGCAAATATTAGAATAT+AGG + chr1_3:55675083-55675102 None:intergenic 20.0%
!! AGAAGTTCAAATGAATATAA+AGG - chr1_3:55675439-55675458 Msa0126560:intron 20.0%
!! TGATTTAATATATTGGGATT+GGG - chr1_3:55675716-55675735 Msa0126560:CDS 20.0%
!!! AATGGATTTTTATGGATAGT+AGG + chr1_3:55672370-55672389 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG - chr1_3:55672468-55672487 Msa0126560:intron 25.0%
!! CCTAATAGCTTTTCATTTTA+GGG - chr1_3:55672469-55672488 Msa0126560:intron 25.0%
!! TTGGATTTCAATGGATTTAA+AGG - chr1_3:55672664-55672683 Msa0126560:intron 25.0%
!! TTTTTATGAGAGATAGAGAA+AGG - chr1_3:55672832-55672851 Msa0126560:intron 25.0%
!! TTTTATGAGAGATAGAGAAA+GGG - chr1_3:55672833-55672852 Msa0126560:intron 25.0%
! CATGAAGACATAAGATTTAT+TGG + chr1_3:55673118-55673137 None:intergenic 25.0%
!!! TAGATTTTGATGGATTTTGT+GGG + chr1_3:55673176-55673195 None:intergenic 25.0%
!!! TTAGATTTTGATGGATTTTG+TGG + chr1_3:55673177-55673196 None:intergenic 25.0%
! GTCATTTAAAAAAAGTCTTG+AGG + chr1_3:55673282-55673301 None:intergenic 25.0%
!! GTATTGGATTAAGATTTTGA+GGG + chr1_3:55673358-55673377 None:intergenic 25.0%
!! TGTATTGGATTAAGATTTTG+AGG + chr1_3:55673359-55673378 None:intergenic 25.0%
! GTTAATGAAAATATATTGGG+TGG + chr1_3:55673436-55673455 None:intergenic 25.0%
! ATGGGAAATTCAATAATCAA+AGG + chr1_3:55673639-55673658 None:intergenic 25.0%
! AGTTATTGCTTCATTTACAT+AGG - chr1_3:55673993-55674012 Msa0126560:intron 25.0%
!!! GAGCAGAGATTTTAAAAATT+TGG + chr1_3:55674078-55674097 None:intergenic 25.0%
! TAATAGACTATATCAAGATG+AGG + chr1_3:55674590-55674609 None:intergenic 25.0%
! TTTCAAAGAAAACATGGTAT+TGG + chr1_3:55674762-55674781 None:intergenic 25.0%
! ATATAACTTATTAACTGGGT+AGG - chr1_3:55674925-55674944 Msa0126560:intron 25.0%
! ATTCTAATATTTGCAACTGT+TGG - chr1_3:55675085-55675104 Msa0126560:intron 25.0%
!!! TTTTTTGGCTTCATATTAGT+GGG - chr1_3:55675141-55675160 Msa0126560:intron 25.0%
!!! AGACAATTTTAGTACTATCA+TGG + chr1_3:55675292-55675311 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1_3:55675295-55675314 Msa0126560:CDS 25.0%
! TTTGAACTTCTTTATCTTCT+AGG + chr1_3:55675430-55675449 None:intergenic 25.0%
! GTTACTTAATTGTCTTACTT+AGG + chr1_3:55675521-55675540 None:intergenic 25.0%
! GTGATTTAATATATTGGGAT+TGG - chr1_3:55675715-55675734 Msa0126560:CDS 25.0%
! AAGCTATTGATAATAAGCCT+TGG - chr1_3:55672005-55672024 Msa0126560:CDS 30.0%
TGAAATTCAGAGCTTTCAAT+TGG - chr1_3:55672034-55672053 Msa0126560:CDS 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1_3:55672047-55672066 Msa0126560:CDS 30.0%
! GTATTGGATGAGGATTTTAA+AGG - chr1_3:55672186-55672205 Msa0126560:CDS 30.0%
TAGGCAAACACAAATAACTT+CGG + chr1_3:55672351-55672370 None:intergenic 30.0%
CCCTAAAATGAAAAGCTATT+AGG + chr1_3:55672472-55672491 None:intergenic 30.0%
! CATGATTTTAAATGACTGTC+AGG - chr1_3:55672632-55672651 Msa0126560:intron 30.0%
TTTATGAGAGATAGAGAAAG+GGG - chr1_3:55672834-55672853 Msa0126560:intron 30.0%
CAAAATTTAGTTGAGGCAAA+TGG - chr1_3:55673486-55673505 Msa0126560:intron 30.0%
ATTGATACTAAAATCGAGGA+AGG - chr1_3:55673519-55673538 Msa0126560:intron 30.0%
AATCTCAACACAACAATCAT+TGG + chr1_3:55673549-55673568 None:intergenic 30.0%
! TTACAATTCTCCTCATTTTC+TGG - chr1_3:55673611-55673630 Msa0126560:intron 30.0%
! AAATTTGGGTTTGAAATCGA+GGG + chr1_3:55673681-55673700 None:intergenic 30.0%
! TAAATTTGGGTTTGAAATCG+AGG + chr1_3:55673682-55673701 None:intergenic 30.0%
! ACTGAACGTGCTTTAAATTT+GGG + chr1_3:55673695-55673714 None:intergenic 30.0%
TCATTAAAGATGAAGGATCT+TGG + chr1_3:55673970-55673989 None:intergenic 30.0%
AACTGCATCATTAAAGATGA+AGG + chr1_3:55673977-55673996 None:intergenic 30.0%
CAACTTGAATGTAATAAGCA+TGG + chr1_3:55674353-55674372 None:intergenic 30.0%
! CAAGTTGAACACTATTATAC+TGG - chr1_3:55674496-55674515 Msa0126560:intron 30.0%
ATGATGTCAACAAAATGAGT+CGG - chr1_3:55674543-55674562 Msa0126560:intron 30.0%
AATATTTGCAACTGTTGGAT+AGG - chr1_3:55675090-55675109 Msa0126560:intron 30.0%
!!! GTTTTTTGGCTTCATATTAG+TGG - chr1_3:55675140-55675159 Msa0126560:intron 30.0%
! ACACAAATTGATAACATCAC+GGG + chr1_3:55675260-55675279 None:intergenic 30.0%
! GACACAAATTGATAACATCA+CGG + chr1_3:55675261-55675280 None:intergenic 30.0%
ATGTTATCAATTTGTGTCGA+AGG - chr1_3:55675263-55675282 Msa0126560:intron 30.0%
GATGATTATAATTCGAAGTG+TGG - chr1_3:55675467-55675486 Msa0126560:intron 30.0%
AACATTCTATGAACTATGCA+AGG - chr1_3:55675538-55675557 Msa0126560:CDS 30.0%
ACATTCTATGAACTATGCAA+GGG - chr1_3:55675539-55675558 Msa0126560:CDS 30.0%
TAATATATTGGGATTGGGAT+TGG - chr1_3:55675721-55675740 Msa0126560:CDS 30.0%
AATATATTGGGATTGGGATT+GGG - chr1_3:55675722-55675741 Msa0126560:CDS 30.0%
CAAAAGAATGACAGAGTTTG+AGG - chr1_3:55671662-55671681 Msa0126560:three_prime_UTR 35.0%
CGATGAAATGAGAATCAGAA+GGG + chr1_3:55671815-55671834 None:intergenic 35.0%
TCGATGAAATGAGAATCAGA+AGG + chr1_3:55671816-55671835 None:intergenic 35.0%
!!! AGATACAGAGCTTTTTTGGT+AGG + chr1_3:55671876-55671895 None:intergenic 35.0%
!!! AGCAAGATACAGAGCTTTTT+TGG + chr1_3:55671880-55671899 None:intergenic 35.0%
GATCATTGTCGATGATGATA+GGG + chr1_3:55671914-55671933 None:intergenic 35.0%
TGATCATTGTCGATGATGAT+AGG + chr1_3:55671915-55671934 None:intergenic 35.0%
TCTGAATTTCAACACATCCA+AGG + chr1_3:55672025-55672044 None:intergenic 35.0%
! TAGATCTCTTGCCATTGATT+GGG - chr1_3:55672094-55672113 Msa0126560:CDS 35.0%
ATCTAAGCTAACCTGGAATT+AGG + chr1_3:55672155-55672174 None:intergenic 35.0%
!! TCCAGGTTAGCTTAGATATT+AGG - chr1_3:55672158-55672177 Msa0126560:CDS 35.0%
!! CCAGGTTAGCTTAGATATTA+GGG - chr1_3:55672159-55672178 Msa0126560:CDS 35.0%
!! CAGGTTAGCTTAGATATTAG+GGG - chr1_3:55672160-55672179 Msa0126560:CDS 35.0%
!! AGGTTAGCTTAGATATTAGG+GGG - chr1_3:55672161-55672180 Msa0126560:CDS 35.0%
! GACTGTCAGGATTTTCAATT+TGG - chr1_3:55672645-55672664 Msa0126560:intron 35.0%
TTATGAGAGATAGAGAAAGG+GGG - chr1_3:55672835-55672854 Msa0126560:intron 35.0%
! TAGAAAACTTAGGGGTGTAT+TGG + chr1_3:55673374-55673393 None:intergenic 35.0%
GGCTATTGATACTAAAATCG+AGG - chr1_3:55673515-55673534 Msa0126560:intron 35.0%
ATCAAAGGAACCAGAAAATG+AGG + chr1_3:55673624-55673643 None:intergenic 35.0%
! GACTGAACGTGCTTTAAATT+TGG + chr1_3:55673696-55673715 None:intergenic 35.0%
TCAAATATTTGTCCAAGCAC+CGG + chr1_3:55673722-55673741 None:intergenic 35.0%
ACAAATATTTGATGTCCCTG+TGG - chr1_3:55673730-55673749 Msa0126560:intron 35.0%
! GAAACACATTTTAAGCCACA+GGG + chr1_3:55673748-55673767 None:intergenic 35.0%
! AGAAACACATTTTAAGCCAC+AGG + chr1_3:55673749-55673768 None:intergenic 35.0%
CTTCCAGTGTTGTCAAATAT+TGG - chr1_3:55673777-55673796 Msa0126560:intron 35.0%
TAGCCAATATTTGACAACAC+TGG + chr1_3:55673783-55673802 None:intergenic 35.0%
! GTGTTGTCAAATATTGGCTA+TGG - chr1_3:55673783-55673802 Msa0126560:intron 35.0%
! TTGTCAAATATTGGCTATGG+TGG - chr1_3:55673786-55673805 Msa0126560:intron 35.0%
!!! ATACTTTTTTCTTTGTGCCG+TGG - chr1_3:55673841-55673860 Msa0126560:intron 35.0%
AGATAGATGAGTGAATAGCA+TGG + chr1_3:55673922-55673941 None:intergenic 35.0%
GCAATACCAAGGCTTAAAAA+AGG + chr1_3:55674136-55674155 None:intergenic 35.0%
AACAATGTGTAGCAATACCA+AGG + chr1_3:55674147-55674166 None:intergenic 35.0%
ATGAAGACTGATGACATTCA+TGG - chr1_3:55674315-55674334 Msa0126560:intron 35.0%
TGGAAGGGATGTCAAAAAAT+GGG + chr1_3:55674386-55674405 None:intergenic 35.0%
ATGGAAGGGATGTCAAAAAA+TGG + chr1_3:55674387-55674406 None:intergenic 35.0%
ATATCAAGATGAGGACTACA+AGG + chr1_3:55674581-55674600 None:intergenic 35.0%
!!! CTGAGCTTCTTGTTGTTTTT+TGG - chr1_3:55675126-55675145 Msa0126560:intron 35.0%
!! ATAAGCTGCATACTGATTTC+GGG + chr1_3:55675189-55675208 None:intergenic 35.0%
!! GATAAGCTGCATACTGATTT+CGG + chr1_3:55675190-55675209 None:intergenic 35.0%
CTTGTGTTCAAGATGATTGA+TGG - chr1_3:55675209-55675228 Msa0126560:intron 35.0%
! TTCAAGATGATTGATGGCTA+TGG - chr1_3:55675215-55675234 Msa0126560:intron 35.0%
TTATCAATTTGTGTCGAAGG+TGG - chr1_3:55675266-55675285 Msa0126560:intron 35.0%
CATTCTATGAACTATGCAAG+GGG - chr1_3:55675540-55675559 Msa0126560:CDS 35.0%
!! TGCTTTAGAGAGAAACAGTT+TGG + chr1_3:55675625-55675644 None:intergenic 35.0%
!! ACAACTTTTGTTGCTTGTCA+TGG - chr1_3:55675654-55675673 Msa0126560:CDS 35.0%
! ATGACGGAAATGAAACCTTC+CGG + chr1_3:55671693-55671712 None:intergenic 40.0%
AAGGAAAGCCTTGGAAACAA+CGG + chr1_3:55671754-55671773 None:intergenic 40.0%
! AGGGAGAAATTGATTCCAGA+CGG + chr1_3:55671796-55671815 None:intergenic 40.0%
CATCATCGACAATGATCAGA+AGG - chr1_3:55671917-55671936 Msa0126560:exon 40.0%
CTAGATCTCTTGCCATTGAT+TGG - chr1_3:55672093-55672112 Msa0126560:CDS 40.0%
! AGATCTCTTGCCATTGATTG+GGG - chr1_3:55672095-55672114 Msa0126560:CDS 40.0%
GGATTTCTATGCCTAATTCC+AGG - chr1_3:55672141-55672160 Msa0126560:CDS 40.0%
CCCTAATATCTAAGCTAACC+TGG + chr1_3:55672162-55672181 None:intergenic 40.0%
!! GGTTAGCTTAGATATTAGGG+GGG - chr1_3:55672162-55672181 Msa0126560:CDS 40.0%
! TAGATATTAGGGGGGTGTAT+TGG - chr1_3:55672170-55672189 Msa0126560:CDS 40.0%
TATGAGAGATAGAGAAAGGG+GGG - chr1_3:55672836-55672855 Msa0126560:intron 40.0%
AGAGAGAGATGAAGAGAGAA+GGG - chr1_3:55672995-55673014 Msa0126560:intron 40.0%
AAAAGAGAGGAGAGAGAGAA+GGG - chr1_3:55673033-55673052 Msa0126560:intron 40.0%
GGAAAAGAGAGAAGGAAGAA+GGG - chr1_3:55673054-55673073 Msa0126560:intron 40.0%
AGTTGAGGCAAATGGATAAG+TGG - chr1_3:55673494-55673513 Msa0126560:intron 40.0%
ATAGCTACGTGGAGTAACAT+GGG + chr1_3:55673657-55673676 None:intergenic 40.0%
TAAAGCACGTTCAGTCAAAC+CGG - chr1_3:55673700-55673719 Msa0126560:intron 40.0%
TCACTTCTGCTAAGTATCAG+CGG - chr1_3:55673889-55673908 Msa0126560:intron 40.0%
!! ATGAAGGATCTTGGTGTTCA+AGG + chr1_3:55673961-55673980 None:intergenic 40.0%
TGTAATAAGCATGGCAGACA+AGG + chr1_3:55674344-55674363 None:intergenic 40.0%
GGAAGGGATGTCAAAAAATG+GGG + chr1_3:55674385-55674404 None:intergenic 40.0%
TTGAAATGCGCACATGTCTA+CGG - chr1_3:55674623-55674642 Msa0126560:intron 40.0%
AACAAATGAACGTCTGAGTG+AGG + chr1_3:55674824-55674843 None:intergenic 40.0%
! ACTCAGACGTTCATTTGTTG+AGG - chr1_3:55674825-55674844 Msa0126560:intron 40.0%
ACTGGGTAGGTCAAATTGTT+TGG - chr1_3:55674938-55674957 Msa0126560:intron 40.0%
CTGGGTAGGTCAAATTGTTT+GGG - chr1_3:55674939-55674958 Msa0126560:intron 40.0%
AGGTCAAATTGTTTGGGCTA+AGG - chr1_3:55674945-55674964 Msa0126560:intron 40.0%
GGTCAAATTGTTTGGGCTAA+GGG - chr1_3:55674946-55674965 Msa0126560:intron 40.0%
AAATTGTTTGGGCTAAGGGT+TGG - chr1_3:55674950-55674969 Msa0126560:intron 40.0%
GATAACATCACGGGATAGTT+TGG + chr1_3:55675251-55675270 None:intergenic 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1_3:55675307-55675326 Msa0126560:CDS 40.0%
TGTTTGGATCCAAATGTGGA+AGG - chr1_3:55675311-55675330 Msa0126560:CDS 40.0%
AAGTGTGGTCTCTTTCTTGA+AGG - chr1_3:55675482-55675501 Msa0126560:intron 40.0%
TTCTTGAAGGAATCGAAGTC+AGG - chr1_3:55675495-55675514 Msa0126560:intron 40.0%
GACAGAGTTTGAGGAATTGC+CGG - chr1_3:55671671-55671690 Msa0126560:three_prime_UTR 45.0%
AGTTGTGCGAGAGAGAATGA+CGG + chr1_3:55671709-55671728 None:intergenic 45.0%
! AAATTGATTCCAGACGGCGT+CGG + chr1_3:55671790-55671809 None:intergenic 45.0%
!!! AGCTTTTTTGGTAGGAGCGT+TGG + chr1_3:55671868-55671887 None:intergenic 45.0%
TCGATCATCACCCCAATCAA+TGG + chr1_3:55672108-55672127 None:intergenic 45.0%
ATGATCGACGCTATTGGAAC+TGG - chr1_3:55672120-55672139 Msa0126560:CDS 45.0%
AGAGAGAAGGGAGAAAAGAG+AGG - chr1_3:55672860-55672879 Msa0126560:intron 45.0%
AGAAAAGAGAGGAGTGAGAG+AGG - chr1_3:55672871-55672890 Msa0126560:intron 45.0%
GAAAAGAGAGGAGTGAGAGA+GGG - chr1_3:55672872-55672891 Msa0126560:intron 45.0%
AGAGAGAAGGGAGAAAAGAG+AGG - chr1_3:55672860-55672879 Msa0126560:intron 45.0%
AGAGAGAGAGAGAGAGAGAA+GGG - chr1_3:55672967-55672986 Msa0126560:intron 45.0%
GAGAGAGAGATGAAGAGAGA+AGG - chr1_3:55672994-55673013 Msa0126560:intron 45.0%
GAAAAGAGAGGAGAGAGAGA+AGG - chr1_3:55673032-55673051 Msa0126560:intron 45.0%
GAGAGAAGGGAAAAGAGAGA+AGG - chr1_3:55673046-55673065 Msa0126560:intron 45.0%
GGGAAAAGAGAGAAGGAAGA+AGG - chr1_3:55673053-55673072 Msa0126560:intron 45.0%
CATAGCTACGTGGAGTAACA+TGG + chr1_3:55673658-55673677 None:intergenic 45.0%
AAGTGATGTGCTATCGATGG+TGG + chr1_3:55673875-55673894 None:intergenic 45.0%
CAGAAGTGATGTGCTATCGA+TGG + chr1_3:55673878-55673897 None:intergenic 45.0%
!! CTTGGTGTTCAAGGTGAACT+TGG + chr1_3:55673952-55673971 None:intergenic 45.0%
ATTTGGCTGTCGCGACAATT+AGG + chr1_3:55674027-55674046 None:intergenic 45.0%
!!! GCTGCTCCTTTTTTAAGCCT+TGG - chr1_3:55674127-55674146 Msa0126560:intron 45.0%
TGCTGAGTCCTTCATCAACA+AGG - chr1_3:55674266-55674285 Msa0126560:intron 45.0%
! TCTGCTGTCCTTGTTGATGA+AGG + chr1_3:55674277-55674296 None:intergenic 45.0%
TCATCAACAAGGACAGCAGA+TGG - chr1_3:55674277-55674296 Msa0126560:intron 45.0%
!! AAATGAGTCGGCTTGTGTCT+AGG - chr1_3:55674555-55674574 Msa0126560:intron 45.0%
AGGTCTGACAGTAGATTGCT+TGG + chr1_3:55674804-55674823 None:intergenic 45.0%
TTGGATCCAAATGTGGAAGG+TGG - chr1_3:55675314-55675333 Msa0126560:CDS 45.0%
TGGATCCAAATGTGGAAGGT+GGG - chr1_3:55675315-55675334 Msa0126560:CDS 45.0%
GGGTGGTTGGAGATTGAAAT+CGG - chr1_3:55675386-55675405 Msa0126560:intron 45.0%
GGTGGTTGGAGATTGAAATC+GGG - chr1_3:55675387-55675406 Msa0126560:intron 45.0%
GTGGTTGGAGATTGAAATCG+GGG - chr1_3:55675388-55675407 Msa0126560:intron 45.0%
ATCGGGGAGTTCTTCAATTC+AGG - chr1_3:55675404-55675423 Msa0126560:intron 45.0%
ATTGGGATTGGGATTGGGAT+TGG - chr1_3:55675727-55675746 Msa0126560:CDS 45.0%
TTGGGATTGGGATTGGGATT+GGG - chr1_3:55675728-55675747 Msa0126560:CDS 45.0%
! GGATTGGGATAGCTGAGTTT+TGG - chr1_3:55675743-55675762 Msa0126560:CDS 45.0%
GAGTTTGAGGAATTGCCGGA+AGG - chr1_3:55671675-55671694 Msa0126560:three_prime_UTR 50.0%
CATTCTCTCTCGCACAACTC+CGG - chr1_3:55671710-55671729 Msa0126560:three_prime_UTR 50.0%
! CAGACTCTCCGTTGTTTCCA+AGG - chr1_3:55671743-55671762 Msa0126560:three_prime_UTR 50.0%
! TTAGGGGGGTGTATTGGATG+AGG - chr1_3:55672176-55672195 Msa0126560:CDS 50.0%
AGAAAGGGGGGAAGAGAGAA+GGG - chr1_3:55672848-55672867 Msa0126560:intron 50.0%
AGGGAGAAGAGAGAGAGAGA+AGG - chr1_3:55672891-55672910 Msa0126560:intron 50.0%
GGGAGAAGAGAGAGAGAGAA+GGG - chr1_3:55672892-55672911 Msa0126560:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr1_3:55672960-55672979 Msa0126560:intron 50.0%
TGAAGAGAGAAGGGAGAGAG+AGG - chr1_3:55673004-55673023 Msa0126560:intron 50.0%
AGAGAGGAGGGAGAAAAGAG+AGG - chr1_3:55673020-55673039 Msa0126560:intron 50.0%
! AAATCGAGGGCATAGCTACG+TGG + chr1_3:55673668-55673687 None:intergenic 50.0%
TTAGCCACCACTAAACGCCA+CGG + chr1_3:55673814-55673833 None:intergenic 50.0%
!! GATGTGCTATCGATGGTGGA+TGG + chr1_3:55673871-55673890 None:intergenic 50.0%
AGGACAGCAGATGGTCTTTG+AGG - chr1_3:55674286-55674305 Msa0126560:intron 50.0%
!! GCATTGGTCTTCAGCTGCAA+GGG + chr1_3:55674677-55674696 None:intergenic 50.0%
!! TGCATTGGTCTTCAGCTGCA+AGG + chr1_3:55674678-55674697 None:intergenic 50.0%
GACCAATGCAGTAGCTGACT+AGG - chr1_3:55674688-55674707 Msa0126560:intron 50.0%
GTAAGATGCAGTGCATCTGC+GGG + chr1_3:55674740-55674759 None:intergenic 50.0%
GGTAAGATGCAGTGCATCTG+CGG + chr1_3:55674741-55674760 None:intergenic 50.0%
GTATCTGTCCTTAGCAGCTG+TGG - chr1_3:55674852-55674871 Msa0126560:intron 50.0%
TTCACTAGCCACAGCTGCTA+AGG + chr1_3:55674863-55674882 None:intergenic 50.0%
CAAGAAGCTCAGCGACTTCA+GGG + chr1_3:55675118-55675137 None:intergenic 50.0%
ACAAGAAGCTCAGCGACTTC+AGG + chr1_3:55675119-55675138 None:intergenic 50.0%
TGTTGCCCACCTTCCACATT+TGG + chr1_3:55675323-55675342 None:intergenic 50.0%
ACAGCGCAGTAGGATTGCAA+CGG - chr1_3:55675345-55675364 Msa0126560:CDS 50.0%
GGAAACAACGGAGAGTCTGC+CGG + chr1_3:55671742-55671761 None:intergenic 55.0%
! ATTCCAGACGGCGTCGGAAT+CGG + chr1_3:55671784-55671803 None:intergenic 55.0%
!! GTAGGAGCGTTGGCAAGTGA+AGG + chr1_3:55671858-55671877 None:intergenic 55.0%
GGGGTGATGATCGACGCTAT+TGG - chr1_3:55672114-55672133 Msa0126560:CDS 55.0%
GAGAAAGGGGGGAAGAGAGA+AGG - chr1_3:55672847-55672866 Msa0126560:intron 55.0%
AGAGAGAAGGGAGAGAGAGG+AGG - chr1_3:55673007-55673026 Msa0126560:intron 55.0%
GAGAGAAGGGAGAGAGAGGA+GGG - chr1_3:55673008-55673027 Msa0126560:intron 55.0%
CGTTCAGTCAAACCGGTGCT+TGG - chr1_3:55673707-55673726 Msa0126560:intron 55.0%
GGTCTTCAGCTGCAAGGGTA+AGG + chr1_3:55674672-55674691 None:intergenic 55.0%
GGCCTAGTCAGCTACTGCAT+TGG + chr1_3:55674693-55674712 None:intergenic 55.0%
TAGGCCACTTGCGTAGACAC+TGG - chr1_3:55674707-55674726 Msa0126560:intron 55.0%
GTGTCCAGTGTCTACGCAAG+TGG + chr1_3:55674714-55674733 None:intergenic 55.0%
GGGCAACATAACAGCGCAGT+AGG - chr1_3:55675335-55675354 Msa0126560:CDS 55.0%
GGCCTAGTGTGAGAAGCGAT+GGG - chr1_3:55675366-55675385 Msa0126560:CDS 55.0%
CACCCATCGCTTCTCACACT+AGG + chr1_3:55675371-55675390 None:intergenic 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1_3:55675369-55675388 Msa0126560:CDS 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1_3:55675373-55675392 Msa0126560:CDS 55.0%
TATGCAAGGGGTCTTGCGTC+TGG - chr1_3:55675552-55675571 Msa0126560:CDS 55.0%
GGCGGCAGAAAGGAAAGCCT+TGG + chr1_3:55671763-55671782 None:intergenic 60.0%
! TATTGGCTATGGTGGCGCCG+TGG - chr1_3:55673794-55673813 Msa0126560:intron 60.0%
!! CGATGGTGGATGGCAGACCA+CGG + chr1_3:55673861-55673880 None:intergenic 60.0%
CGGCCTAGTGTGAGAAGCGA+TGG - chr1_3:55675365-55675384 Msa0126560:CDS 60.0%
CGTCGGAATCGGCGGCAGAA+AGG + chr1_3:55671773-55671792 None:intergenic 65.0%
GCAAGGGGTCTTGCGTCTGG+TGG - chr1_3:55675555-55675574 Msa0126560:CDS 65.0%
CGCACAACTCCGGCTGACGC+CGG - chr1_3:55671720-55671739 Msa0126560:three_prime_UTR 70.0%
GAGAGTCTGCCGGCGTCAGC+CGG + chr1_3:55671732-55671751 None:intergenic 70.0%
! CCAGACGGCGTCGGAATCGG+CGG + chr1_3:55671781-55671800 None:intergenic 70.0%
GGTGGCGCCGTGGCGTTTAG+TGG - chr1_3:55673804-55673823 Msa0126560:intron 70.0%
GGCGCCGTGGCGTTTAGTGG+TGG - chr1_3:55673807-55673826 Msa0126560:intron 70.0%
!! CCGCCGATTCCGACGCCGTC+TGG - chr1_3:55671778-55671797 Msa0126560:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55671623 55675825 55671623 ID=Msa0126560;Name=Msa0126560
chr1_3 mRNA 55671623 55675825 55671623 ID=Msa0126560-mRNA-1;Parent=Msa0126560;Name=Msa0126560-mRNA-1;_AED=0.43;_eAED=0.43;_QI=46|1|1|1|1|1|3|299|267
chr1_3 exon 55671623 55672336 55671623 ID=Msa0126560-mRNA-1:exon:17374;Parent=Msa0126560-mRNA-1
chr1_3 exon 55675286 55675404 55675286 ID=Msa0126560-mRNA-1:exon:17373;Parent=Msa0126560-mRNA-1
chr1_3 exon 55675510 55675825 55675510 ID=Msa0126560-mRNA-1:exon:17372;Parent=Msa0126560-mRNA-1
chr1_3 five_prime_UTR 55675780 55675825 55675780 ID=Msa0126560-mRNA-1:five_prime_utr;Parent=Msa0126560-mRNA-1
chr1_3 CDS 55675510 55675779 55675510 ID=Msa0126560-mRNA-1:cds;Parent=Msa0126560-mRNA-1
chr1_3 CDS 55675286 55675404 55675286 ID=Msa0126560-mRNA-1:cds;Parent=Msa0126560-mRNA-1
chr1_3 CDS 55671922 55672336 55671922 ID=Msa0126560-mRNA-1:cds;Parent=Msa0126560-mRNA-1
chr1_3 three_prime_UTR 55671623 55671921 55671623 ID=Msa0126560-mRNA-1:three_prime_utr;Parent=Msa0126560-mRNA-1
Gene Sequence

>Msa0126560

ATGACAGAGTTTGAGGAATTGCCGGAAGGTTTCATTTCCGTCATTCTCTCTCGCACAACTCCGGCTGACGCCGGCAGACTCTCCGTTGTTTCCAAGGCTTTCCTTTCTGCCGCCGATTCCGACGCCGTCTGGAATCAATTTCTCCCTTCTGATTCTCATTTCATCGACTTTATCATCTCACACTCTCCTTCACTTGCCAACGCTCCTACCAAAAAAGCTCTGTATCTTGCTCTCTCTGATCGCCCTATCATCATCGACAATGATCAGAAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAATGTTACATGCTTTCAGCTAGATCTCTTGCCATTGATTGGGGTGATGATCGACGCTATTGGAACTGGATTTCTATGCCTAATTCCAGGTTCCCTGAAGTCGCTGAGCTTCTTGTTGTTTTTTGGCTTCATATTAGTGGGATGATAAACATGCTTGCATTGTCCCGAAATCAGTATGCAGCTTATCTTGTGTTCAAGATGATTGATGGCTATGGATTTCAGAATCCAAACTATCCCGTGATGTTATCAATTTGTGTCGAAGGTGGCCATGATAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGGTGGGCAACATAACAGCGCAGTAGGATTGCAACGGCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAAATCGGGGAGTTCTTCAATTCAGGCCTAGAAGATAAAGAAGTTCAAATGAATATAAAGGAGATAGATGATTATAATTCGAAGTGTGGTCTCTTTCTTGAAGGAATCGAAGTCAGGCCTAAGTAA

Protein sequence

>Msa0126560

MTEFEELPEGFISVILSRTTPADAGRLSVVSKAFLSAADSDAVWNQFLPSDSHFIDFIISHSPSLANAPTKKALYLALSDRPIIIDNDQKSFQLDRKSGKKCYMLSARSLAIDWGDDRRYWNWISMPNSRFPEVAELLVVFWLHISGMINMLALSRNQYAAYLVFKMIDGYGFQNPNYPVMLSICVEGGHDSTKIVCLDPNVEGGQHNSAVGLQRPSVRSDGWLEIEIGEFFNSGLEDKEVQMNIKEIDDYNSKCGLFLEGIEVRPK*