Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127380 | sp|Q8RXF8|MIRO1_ARATH | 68.226 | 513 | 152 | 2 | 1 | 511 | 145 | 648 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127380 | G7I836 | 97.260 | 511 | 6 | 1 | 1 | 511 | 144 | 646 | 0.0 | 1019 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033020 | Msa0127380 | 0.950065 | 3.547961e-108 | -8.615850e-47 |
| Msa0127380 | Msa1417780 | 0.947297 | 8.848760e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127380 | MtrunA17_Chr1g0191811 | 97.260 | 511 | 6 | 1 | 1 | 511 | 144 | 646 | 0.0 | 1019 |
| Msa0127380 | MtrunA17_Chr5g0413741 | 70.850 | 494 | 134 | 3 | 1 | 493 | 171 | 655 | 0.0 | 727 |
| Msa0127380 | MtrunA17_Chr5g0417151 | 68.846 | 520 | 117 | 3 | 1 | 483 | 106 | 617 | 0.0 | 714 |
| Msa0127380 | MtrunA17_Chr4g0073381 | 60.388 | 515 | 187 | 4 | 1 | 509 | 85 | 588 | 0.0 | 613 |
| Msa0127380 | MtrunA17_Chr7g0259771 | 54.883 | 512 | 222 | 2 | 1 | 511 | 136 | 639 | 0.0 | 609 |
| Msa0127380 | MtrunA17_Chr5g0413461 | 68.613 | 411 | 115 | 2 | 84 | 494 | 4 | 400 | 0.0 | 564 |
| Msa0127380 | MtrunA17_Chr4g0073061 | 62.615 | 436 | 148 | 2 | 22 | 457 | 190 | 610 | 0.0 | 543 |
| Msa0127380 | MtrunA17_Chr1g0185591 | 51.572 | 477 | 222 | 2 | 4 | 479 | 143 | 611 | 2.89e-177 | 513 |
| Msa0127380 | MtrunA17_Chr5g0413771 | 67.917 | 240 | 69 | 1 | 272 | 511 | 1 | 232 | 3.61e-106 | 316 |
| Msa0127380 | MtrunA17_Chr5g0413781 | 56.075 | 107 | 20 | 1 | 129 | 235 | 1 | 80 | 4.92e-28 | 107 |
| Msa0127380 | MtrunA17_Chr4g0069591 | 51.190 | 84 | 22 | 2 | 442 | 508 | 2 | 83 | 3.64e-18 | 79.3 |
| Msa0127380 | MtrunA17_Chr8g0338031 | 37.086 | 151 | 77 | 3 | 4 | 152 | 178 | 312 | 2.87e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127380 | AT5G27540.1 | 68.226 | 513 | 152 | 2 | 1 | 511 | 145 | 648 | 0.0 | 701 |
| Msa0127380 | AT5G27540.2 | 68.226 | 513 | 152 | 2 | 1 | 511 | 145 | 648 | 0.0 | 701 |
| Msa0127380 | AT3G63150.1 | 58.039 | 510 | 205 | 2 | 1 | 509 | 142 | 643 | 0.0 | 622 |
| Msa0127380 | AT3G05310.1 | 54.669 | 514 | 219 | 7 | 2 | 509 | 143 | 648 | 0.0 | 562 |
| Msa0127380 | AT3G05310.3 | 54.795 | 511 | 217 | 7 | 5 | 509 | 1 | 503 | 0.0 | 561 |
| Msa0127380 | AT3G05310.2 | 55.215 | 489 | 205 | 7 | 5 | 487 | 1 | 481 | 0.0 | 534 |
Find 134 sgRNAs with CRISPR-Local
Find 399 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTCCAGCTTCAGTTTC+TGG | 0.055140 | 1_3:+56605943 | None:intergenic |
| GCTAAAGGCTTTAACATTAA+AGG | 0.148261 | 1_3:-56605171 | Msa0127380:three_prime_UTR |
| TCGCGGAACTGTTGCATTAT+TGG | 0.162225 | 1_3:+56610848 | None:intergenic |
| TTGAAAATTTAAGTACATTT+TGG | 0.188192 | 1_3:-56611257 | Msa0127380:five_prime_UTR |
| TTGGCGACATCACCTGTTCT+AGG | 0.278809 | 1_3:+56610867 | None:intergenic |
| GGATTATAAGCTTCAGAATA+TGG | 0.283134 | 1_3:+56608521 | None:intergenic |
| TAAATGTTGTTGATATTTCT+AGG | 0.292658 | 1_3:-56608451 | Msa0127380:CDS |
| TGAATCATTTGATGCTGATT+TGG | 0.301248 | 1_3:-56609862 | Msa0127380:intron |
| AGGAAAGCAATCTACCTTTC+CGG | 0.302489 | 1_3:+56609659 | None:intergenic |
| TGTGCATAGTAGAAAACTTC+AGG | 0.319763 | 1_3:+56610671 | None:intergenic |
| GGAAAGCAATCTACCTTTCC+GGG | 0.324845 | 1_3:+56609660 | None:intergenic |
| TCTGGATTTAGTCTGCTCTT+TGG | 0.336914 | 1_3:-56605193 | Msa0127380:three_prime_UTR |
| CCCTCACCTCCGCAACTTAG+AGG | 0.339641 | 1_3:-56611232 | Msa0127380:intron |
| GGTGGCCGACAAGGAGTCTT+TGG | 0.356422 | 1_3:-56608215 | Msa0127380:CDS |
| GGAACGGCAGTGGCGGTTGT+TGG | 0.364982 | 1_3:-56605306 | Msa0127380:CDS |
| TTGTTGGGATCGGTGCTTAC+AGG | 0.370590 | 1_3:-56605290 | Msa0127380:CDS |
| ATACCAATCAGTGTGAAGTT+AGG | 0.375933 | 1_3:-56606027 | Msa0127380:CDS |
| AGAAGGTGAAGTTGCAAGTC+TGG | 0.383575 | 1_3:-56608236 | Msa0127380:CDS |
| TTTATTAGTCAGGGCCTTCA+TGG | 0.387308 | 1_3:-56605018 | Msa0127380:three_prime_UTR |
| GATCTTGTTAATCTGCTTGC+GGG | 0.398913 | 1_3:+56605921 | None:intergenic |
| TGTGTTTCTTGATCAAATAA+AGG | 0.399311 | 1_3:+56610623 | None:intergenic |
| TTAGGTCTGACGAGTCTTCA+TGG | 0.405485 | 1_3:-56607616 | Msa0127380:intron |
| GATCTCTTGGTACAGATTGC+TGG | 0.405559 | 1_3:-56607581 | Msa0127380:CDS |
| GCATTGAGTGTTCAGCATCT+AGG | 0.406021 | 1_3:-56610814 | Msa0127380:CDS |
| TTAGTCTGCTCTTTGGCTAA+AGG | 0.407783 | 1_3:-56605186 | Msa0127380:three_prime_UTR |
| GCAATATTGAATTCTTTCAT+TGG | 0.414222 | 1_3:-56608637 | Msa0127380:CDS |
| TCCCCTAACTTCACACTGAT+TGG | 0.415952 | 1_3:+56606024 | None:intergenic |
| TACCAATCAGTGTGAAGTTA+GGG | 0.416681 | 1_3:-56606026 | Msa0127380:CDS |
| TTGCAACCGACCACTATAAC+TGG | 0.418708 | 1_3:+56610923 | None:intergenic |
| TTTGAAGCGCACTCCTGATC+AGG | 0.425956 | 1_3:-56610073 | Msa0127380:intron |
| CTCATATAGATTTCCGATCC+AGG | 0.429933 | 1_3:+56609455 | None:intergenic |
| AGTTGCAGCTAAGGATGATC+TGG | 0.438808 | 1_3:-56607519 | Msa0127380:CDS |
| GAACGGCAGTGGCGGTTGTT+GGG | 0.440689 | 1_3:-56605305 | Msa0127380:CDS |
| GCTGGTCATGGAGAAAATAC+TGG | 0.440820 | 1_3:-56607563 | Msa0127380:CDS |
| GCTGTTGAAAGAAATGCATT+TGG | 0.442039 | 1_3:-56609429 | Msa0127380:CDS |
| TGAATGTTGTTGATATATCT+AGG | 0.442883 | 1_3:-56608475 | Msa0127380:CDS |
| GTCACACGGACAGCAGATAA+TGG | 0.445144 | 1_3:+56608751 | None:intergenic |
| AGACTTGCAACTTCACCTTC+TGG | 0.457494 | 1_3:+56608238 | None:intergenic |
| ATATCAACGGTCACCTATCA+TGG | 0.457862 | 1_3:+56608167 | None:intergenic |
| GAACGAGGACTTACTTTGAC+GGG | 0.459244 | 1_3:-56610213 | Msa0127380:CDS |
| TGGACTGTGCTCAGAAAGTT+CGG | 0.460888 | 1_3:-56610138 | Msa0127380:CDS |
| AAACAATTCTTCAAGTTCAC+GGG | 0.465593 | 1_3:+56609691 | None:intergenic |
| TGATCAAATAAAGGAGCTGT+TGG | 0.469295 | 1_3:+56610632 | None:intergenic |
| TATTGAATTCTTTCATTGGA+AGG | 0.472632 | 1_3:-56608633 | Msa0127380:intron |
| TTTACACCCACAATTTCTGC+TGG | 0.474302 | 1_3:+56610273 | None:intergenic |
| CTTAGCTGCAACTATAAGAC+AGG | 0.483488 | 1_3:+56607529 | None:intergenic |
| GCTCAGCAGCAGTTACAATT+CGG | 0.484471 | 1_3:+56605983 | None:intergenic |
| GCTGCAAGGAAGAGTGCATC+TGG | 0.485620 | 1_3:-56605261 | Msa0127380:CDS |
| TCAGGAGTGCGCTTCAAAGT+TGG | 0.487194 | 1_3:+56610078 | None:intergenic |
| AACTTCACACTGATTGGTAT+AGG | 0.487429 | 1_3:+56606030 | None:intergenic |
| GAGGGTATCATATGATCTCT+TGG | 0.490199 | 1_3:-56607594 | Msa0127380:CDS |
| TGGCTATACAAGAGTCAACT+AGG | 0.492631 | 1_3:-56607484 | Msa0127380:CDS |
| TCTTGTATAGCCAATGCAAA+TGG | 0.492757 | 1_3:+56607494 | None:intergenic |
| AGCATTCCAGAAACTGAAGC+TGG | 0.495802 | 1_3:-56605949 | Msa0127380:CDS |
| AAAACAATTCTTCAAGTTCA+CGG | 0.499099 | 1_3:+56609690 | None:intergenic |
| ACCTCTAAGTTGCGGAGGTG+AGG | 0.499578 | 1_3:+56611231 | None:intergenic |
| AGATTCTCCACACTGAAGGC+CGG | 0.501163 | 1_3:+56608799 | None:intergenic |
| TATAGTGGTCGGTTGCAAGC+TGG | 0.505286 | 1_3:-56610918 | Msa0127380:five_prime_UTR |
| CTGTCTTATAGTTGCAGCTA+AGG | 0.507445 | 1_3:-56607528 | Msa0127380:CDS |
| CCTCTAAGTTGCGGAGGTGA+GGG | 0.508445 | 1_3:+56611232 | None:intergenic |
| TTGGTACAGATTGCTGGTCA+TGG | 0.509199 | 1_3:-56607575 | Msa0127380:CDS |
| GCATAACGATCCTCGTTGGT+TGG | 0.510674 | 1_3:+56608500 | None:intergenic |
| AAATGTTGTTGATATTTCTA+GGG | 0.510920 | 1_3:-56608450 | Msa0127380:intron |
| GTTTCTGGAATGCTTAAATG+AGG | 0.512018 | 1_3:+56605958 | None:intergenic |
| TCAGCAGGTGAGCCTAGAAC+AGG | 0.512798 | 1_3:-56610879 | Msa0127380:five_prime_UTR |
| GTGCATAGTAGAAAACTTCA+GGG | 0.515784 | 1_3:+56610672 | None:intergenic |
| AGAAATTGTGGGTGTAAAGA+AGG | 0.519772 | 1_3:-56610268 | Msa0127380:CDS |
| GTGGAGAATCTAATATACAT+AGG | 0.520845 | 1_3:-56608787 | Msa0127380:CDS |
| TTCAGCATCTAGGCTTATCC+AGG | 0.522194 | 1_3:-56610804 | Msa0127380:intron |
| CTAATATACATAGGGTTCCC+TGG | 0.523491 | 1_3:-56608778 | Msa0127380:CDS |
| GATTCTCCACACTGAAGGCC+GGG | 0.523700 | 1_3:+56608800 | None:intergenic |
| TTAAATTGCAGTCCCTGGAT+CGG | 0.528106 | 1_3:-56609468 | Msa0127380:intron |
| GCAGTGGCGGTTGTTGGGAT+CGG | 0.530555 | 1_3:-56605300 | Msa0127380:CDS |
| TATTGCAGTTGGAACGGCAG+TGG | 0.531844 | 1_3:-56605316 | Msa0127380:intron |
| TGATCTGGATCCATTTGCAT+TGG | 0.534252 | 1_3:-56607504 | Msa0127380:CDS |
| TCTAAAGCCTCGATGTGTGC+GGG | 0.535241 | 1_3:-56610597 | Msa0127380:CDS |
| TCTGCAACCAGCAGAAATTG+TGG | 0.536632 | 1_3:-56610280 | Msa0127380:CDS |
| CGAACGAGGACTTACTTTGA+CGG | 0.540399 | 1_3:-56610214 | Msa0127380:CDS |
| TAGTCAGGACATGGGAGTAG+AGG | 0.542994 | 1_3:-56606055 | Msa0127380:CDS |
| TATCTGCTGTCCGTGTGACT+AGG | 0.544245 | 1_3:-56608747 | Msa0127380:CDS |
| ATTGCAAACTCTATTGCAGA+TGG | 0.545203 | 1_3:+56605138 | None:intergenic |
| AGATCTTGTTAATCTGCTTG+CGG | 0.547096 | 1_3:+56605920 | None:intergenic |
| AATCTACCTTTCCGGGGCAG+TGG | 0.547915 | 1_3:+56609667 | None:intergenic |
| TGCAAGTCTGGTGGCCGACA+AGG | 0.549035 | 1_3:-56608224 | Msa0127380:CDS |
| CTGCAACCAGCAGAAATTGT+GGG | 0.549445 | 1_3:-56610279 | Msa0127380:CDS |
| CTGGATCGGAAATCTATATG+AGG | 0.550319 | 1_3:-56609454 | Msa0127380:CDS |
| GTTGAAAGAAATGCATTTGG+AGG | 0.551896 | 1_3:-56609426 | Msa0127380:CDS |
| AATGAAAGAATTCAATATTG+CGG | 0.552562 | 1_3:+56608639 | None:intergenic |
| GCATTATATTGCAGTTGGAA+CGG | 0.557149 | 1_3:-56605322 | Msa0127380:intron |
| ACAATTTCTGCTGGTTGCAG+AGG | 0.560104 | 1_3:+56610282 | None:intergenic |
| TGGAGAATCTAATATACATA+GGG | 0.562219 | 1_3:-56608786 | Msa0127380:CDS |
| TGCAGTTGGAACGGCAGTGG+CGG | 0.562789 | 1_3:-56605313 | Msa0127380:intron |
| TTTGTAGGTTAGTCAGGACA+TGG | 0.562907 | 1_3:-56606064 | Msa0127380:intron |
| ACAGCAGATAATGGTTCACC+AGG | 0.564443 | 1_3:+56608760 | None:intergenic |
| TGAGGCCAAAGACTCCTTGT+CGG | 0.573193 | 1_3:+56608210 | None:intergenic |
| GGTGAATGTTCCAGTTATAG+TGG | 0.576220 | 1_3:-56610933 | Msa0127380:five_prime_UTR |
| TATTAGATTCTCCACACTGA+AGG | 0.576787 | 1_3:+56608795 | None:intergenic |
| TTTGCGAGATGAAAATCAGC+AGG | 0.578705 | 1_3:-56610894 | Msa0127380:five_prime_UTR |
| TATATAATATATCACCATGA+AGG | 0.581111 | 1_3:+56605004 | None:intergenic |
| CTCTAAAGCCTCGATGTGTG+CGG | 0.582022 | 1_3:-56610598 | Msa0127380:CDS |
| TTTATTCTCTGCGACTCAGA+CGG | 0.583863 | 1_3:-56610560 | Msa0127380:CDS |
| TCATATAGATTTCCGATCCA+GGG | 0.585821 | 1_3:+56609456 | None:intergenic |
| CACAGCATAACGATCCTCGT+TGG | 0.586419 | 1_3:+56608496 | None:intergenic |
| AAGGGCGTCTTGAGACTACA+TGG | 0.586969 | 1_3:-56610158 | Msa0127380:CDS |
| AATGTTCCAGTTATAGTGGT+CGG | 0.588860 | 1_3:-56610929 | Msa0127380:five_prime_UTR |
| CTCTGCGACTCAGACGGAGA+TGG | 0.593421 | 1_3:-56610554 | Msa0127380:CDS |
| GATGTGTGCGGGCTTTGAAG+CGG | 0.597496 | 1_3:-56610586 | Msa0127380:CDS |
| GTCTGACGAGTCTTCATGGA+GGG | 0.609739 | 1_3:-56607612 | Msa0127380:CDS |
| TGGAGAAAATACTGGCTATG+AGG | 0.616701 | 1_3:-56607555 | Msa0127380:CDS |
| GGCTATACAAGAGTCAACTA+GGG | 0.620017 | 1_3:-56607483 | Msa0127380:intron |
| AGATCATAACCTCTAAGTTG+CGG | 0.621424 | 1_3:+56611223 | None:intergenic |
| TTGTAGGTTAGTCAGGACAT+GGG | 0.627839 | 1_3:-56606063 | Msa0127380:intron |
| CAATGCAAGTTTCAATCTCG+CGG | 0.629625 | 1_3:+56610831 | None:intergenic |
| GAATGTTGTTGATATATCTA+GGG | 0.630141 | 1_3:-56608474 | Msa0127380:CDS |
| GTGCAAGATAAATTGTCTGA+AGG | 0.633010 | 1_3:-56610243 | Msa0127380:CDS |
| AGGTGAAGTTGCAAGTCTGG+TGG | 0.637915 | 1_3:-56608233 | Msa0127380:CDS |
| GTCTATCACATGCATAAGTG+AGG | 0.647194 | 1_3:+56611289 | None:intergenic |
| CGCGTCGCTTCCTAGTCACA+CGG | 0.647450 | 1_3:+56608737 | None:intergenic |
| TTCAAAGCCCGCACACATCG+AGG | 0.648111 | 1_3:+56610590 | None:intergenic |
| CTTACAGGATATATGCTGCA+AGG | 0.651354 | 1_3:-56605275 | Msa0127380:CDS |
| TCTAAACCCGGCCTTCAGTG+TGG | 0.651361 | 1_3:-56608806 | Msa0127380:CDS |
| ACCAATCAGTGTGAAGTTAG+GGG | 0.655652 | 1_3:-56606025 | Msa0127380:CDS |
| TCATAACCTCTAAGTTGCGG+AGG | 0.656386 | 1_3:+56611226 | None:intergenic |
| AACAATTCTTCAAGTTCACG+GGG | 0.662807 | 1_3:+56609692 | None:intergenic |
| GAAAGCAATCTACCTTTCCG+GGG | 0.665164 | 1_3:+56609661 | None:intergenic |
| CAGCAGCAGTTACAATTCGG+CGG | 0.665217 | 1_3:+56605986 | None:intergenic |
| ACTCATGACACTTCTAAACC+CGG | 0.676807 | 1_3:-56608818 | Msa0127380:CDS |
| GTGTTGAAAGAGATTCCAGA+AGG | 0.690451 | 1_3:-56608253 | Msa0127380:CDS |
| TCTGAAGGTGTTAACGAACG+AGG | 0.697614 | 1_3:-56610228 | Msa0127380:CDS |
| TTAGCTGCAACTATAAGACA+GGG | 0.712396 | 1_3:+56607530 | None:intergenic |
| CAGCAGATAATGGTTCACCA+GGG | 0.731463 | 1_3:+56608761 | None:intergenic |
| AGCTTATAATCCAACCAACG+AGG | 0.743058 | 1_3:-56608510 | Msa0127380:CDS |
| GGTCTGACGAGTCTTCATGG+AGG | 0.756034 | 1_3:-56607613 | Msa0127380:CDS |
| ACATGCATAAGTGAGGACAA+CGG | 0.771471 | 1_3:+56611296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATCTTAAAATATCAA+TGG | + | chr1_3:56607229-56607248 | None:intergenic | 10.0% |
| !! | ATAATTAAATCTATATTATC+AGG | + | chr1_3:56607693-56607712 | None:intergenic | 10.0% |
| !! | ATAATATAGATTTAATTATC+CGG | - | chr1_3:56607694-56607713 | Msa0127380:intron | 10.0% |
| !!! | TTTTTTTTTTTATTTCTTGT+TGG | - | chr1_3:56610738-56610757 | Msa0127380:intron | 10.0% |
| !!! | TTTTTTTTTTATTTCTTGTT+GGG | - | chr1_3:56610739-56610758 | Msa0127380:intron | 10.0% |
| !! | TTGATAAAAAATTAAACTTA+AGG | + | chr1_3:56611182-56611201 | None:intergenic | 10.0% |
| !!! | TTAAGTTTAATTTTTTATCA+AGG | - | chr1_3:56611181-56611200 | Msa0127380:intron | 10.0% |
| !!! | TTGAAAATTTAAGTACATTT+TGG | - | chr1_3:56605017-56605036 | Msa0127380:three_prime_UTR | 15.0% |
| !! | CTATTCTATTTATTCATTTA+GGG | + | chr1_3:56605147-56605166 | None:intergenic | 15.0% |
| !! | TCTATTCTATTTATTCATTT+AGG | + | chr1_3:56605148-56605167 | None:intergenic | 15.0% |
| !! | AAGAAAAGTAAAATTATTCA+GGG | + | chr1_3:56606459-56606478 | None:intergenic | 15.0% |
| !! | ATATATCTTAAAAAAGTCAA+TGG | + | chr1_3:56607104-56607123 | None:intergenic | 15.0% |
| !! | ACCAAAATATTTAATATCAA+CGG | + | chr1_3:56608123-56608142 | None:intergenic | 15.0% |
| !! | TAACTTATAAGCAAATTTAT+AGG | + | chr1_3:56608538-56608557 | None:intergenic | 15.0% |
| !!! | GCTGATTAAAAATTTATTTT+AGG | - | chr1_3:56608640-56608659 | Msa0127380:CDS | 15.0% |
| !!! | TTTTTTAAACAACTTATCTT+CGG | - | chr1_3:56610173-56610192 | Msa0127380:CDS | 15.0% |
| !! | AAAATTTAAGTAGGTTAAAT+AGG | + | chr1_3:56610507-56610526 | None:intergenic | 15.0% |
| !!! | TATTTAACCTACTTAAATTT+TGG | - | chr1_3:56610506-56610525 | Msa0127380:intron | 15.0% |
| !!! | ATTTAACCTACTTAAATTTT+GGG | - | chr1_3:56610507-56610526 | Msa0127380:intron | 15.0% |
| !! | ATAAAAAATTAAACTTAAGG+TGG | + | chr1_3:56611179-56611198 | None:intergenic | 15.0% |
| !!! | AAGTTTTATACACAAATTAT+TGG | - | chr1_3:56611221-56611240 | Msa0127380:intron | 15.0% |
| !! | AAATTAATATGCTACAAGAA+TGG | - | chr1_3:56605182-56605201 | Msa0127380:three_prime_UTR | 20.0% |
| !! | TTAATGCTTGACATAAATAT+TGG | - | chr1_3:56605301-56605320 | Msa0127380:CDS | 20.0% |
| !!! | TAATTGAATTTTCTTTCTGA+AGG | - | chr1_3:56605578-56605597 | Msa0127380:intron | 20.0% |
| !! | TCATAATACTCAGATAATAA+AGG | + | chr1_3:56605883-56605902 | None:intergenic | 20.0% |
| !!! | TTTTCACAAATCTTATACAA+AGG | + | chr1_3:56605933-56605952 | None:intergenic | 20.0% |
| !! | CAAGAAAAGTAAAATTATTC+AGG | + | chr1_3:56606460-56606479 | None:intergenic | 20.0% |
| !! | ACTCAATTTAAATTGTGTTA+TGG | - | chr1_3:56607166-56607185 | Msa0127380:intron | 20.0% |
| !!! | AAGAGAAATTATATGTTTTC+TGG | - | chr1_3:56607424-56607443 | Msa0127380:intron | 20.0% |
| !! | AATGAAAGAATTCAATATTG+CGG | + | chr1_3:56607638-56607657 | None:intergenic | 20.0% |
| !! | TAAATGTTGTTGATATTTCT+AGG | - | chr1_3:56607823-56607842 | Msa0127380:intron | 20.0% |
| !!! | AAATGTTGTTGATATTTCTA+GGG | - | chr1_3:56607824-56607843 | Msa0127380:intron | 20.0% |
| !!! | ACCGTTGATATTAAATATTT+TGG | - | chr1_3:56608119-56608138 | Msa0127380:intron | 20.0% |
| !!! | TATTTTCCTAAAATAACGTT+AGG | - | chr1_3:56608206-56608225 | Msa0127380:CDS | 20.0% |
| !! | AAAACATTAATTGTACTTCA+AGG | - | chr1_3:56608356-56608375 | Msa0127380:intron | 20.0% |
| !! | ATGATCATATACATAATTGT+TGG | - | chr1_3:56608840-56608859 | Msa0127380:intron | 20.0% |
| !! | AGATAAATAGAGATTTAATG+CGG | - | chr1_3:56608869-56608888 | Msa0127380:intron | 20.0% |
| !!! | TATTGCATATCAGAAAATTT+TGG | + | chr1_3:56608927-56608946 | None:intergenic | 20.0% |
| !!! | TATGCTATTAACTATGATTT+TGG | - | chr1_3:56609139-56609158 | Msa0127380:intron | 20.0% |
| !! | TGTAACTTTCCAAATATAAT+AGG | + | chr1_3:56609394-56609413 | None:intergenic | 20.0% |
| !! | AAATTGTCTAATTGTAAAGA+CGG | + | chr1_3:56609614-56609633 | None:intergenic | 20.0% |
| !!! | TGATTTTGTTGATAATTCAT+TGG | + | chr1_3:56610784-56610803 | None:intergenic | 20.0% |
| !! | GTAGCAAATGAATAAATAAA+TGG | - | chr1_3:56610808-56610827 | Msa0127380:CDS | 20.0% |
| !!! | TGACTTAAATTTGAAGTATT+TGG | + | chr1_3:56610889-56610908 | None:intergenic | 20.0% |
| !!! | TTTTTTATCAAGGTTGAATT+AGG | - | chr1_3:56611191-56611210 | Msa0127380:intron | 20.0% |
| !! | TATATAATATATCACCATGA+AGG | + | chr1_3:56611273-56611292 | None:intergenic | 20.0% |
| !!! | ACTTAAATTTTCAAGTGTCT+CGG | + | chr1_3:56605011-56605030 | None:intergenic | 25.0% |
| ! | TAAGACACAAAAACAATAAC+AGG | + | chr1_3:56605079-56605098 | None:intergenic | 25.0% |
| ! | TATTTATTCATTTAGGGAAG+GGG | + | chr1_3:56605141-56605160 | None:intergenic | 25.0% |
| ! | CTATTTATTCATTTAGGGAA+GGG | + | chr1_3:56605142-56605161 | None:intergenic | 25.0% |
| ! | TCTATTTATTCATTTAGGGA+AGG | + | chr1_3:56605143-56605162 | None:intergenic | 25.0% |
| ! | AAATAACATTTCAACAAAGG+AGG | + | chr1_3:56605527-56605546 | None:intergenic | 25.0% |
| !! | CCTTTGTTGAAATGTTATTT+CGG | - | chr1_3:56605527-56605546 | Msa0127380:intron | 25.0% |
| ! | TGTGTTTCTTGATCAAATAA+AGG | + | chr1_3:56605654-56605673 | None:intergenic | 25.0% |
| !! | TTTTGACATTCAATATGAGA+AGG | + | chr1_3:56605792-56605811 | None:intergenic | 25.0% |
| ! | CATATTGAATGTCAAAATTG+TGG | - | chr1_3:56605795-56605814 | Msa0127380:intron | 25.0% |
| !!! | TCTTTTTTCTAGTTGAATCT+TGG | - | chr1_3:56606237-56606256 | Msa0127380:intron | 25.0% |
| !! | TATAAAGAGCATAATTCACA+AGG | + | chr1_3:56606263-56606282 | None:intergenic | 25.0% |
| ! | ATATCTTACTCTATTCTCTT+TGG | - | chr1_3:56606327-56606346 | Msa0127380:intron | 25.0% |
| ! | AAAATGTCTGAAAATGATTG+GGG | + | chr1_3:56606488-56606507 | None:intergenic | 25.0% |
| ! | GAAAATGTCTGAAAATGATT+GGG | + | chr1_3:56606489-56606508 | None:intergenic | 25.0% |
| ! | AGAAAATGTCTGAAAATGAT+TGG | + | chr1_3:56606490-56606509 | None:intergenic | 25.0% |
| !! | AAAACAATTCTTCAAGTTCA+CGG | + | chr1_3:56606587-56606606 | None:intergenic | 25.0% |
| ! | TATGACATAATTTACATGTG+AGG | - | chr1_3:56606750-56606769 | Msa0127380:intron | 25.0% |
| ! | ATATCAAATAACATTGCCAA+GGG | + | chr1_3:56606777-56606796 | None:intergenic | 25.0% |
| ! | AATATCAAATAACATTGCCA+AGG | + | chr1_3:56606778-56606797 | None:intergenic | 25.0% |
| ! | TTGAGTGATAAAATTAACCA+TGG | + | chr1_3:56606984-56607003 | None:intergenic | 25.0% |
| !!! | AAGTAGTGTTTTTAGAATCA+AGG | - | chr1_3:56607007-56607026 | Msa0127380:intron | 25.0% |
| ! | TATATATGTTCGTATAAGAG+TGG | - | chr1_3:56607119-56607138 | Msa0127380:intron | 25.0% |
| ! | TGGAGAATCTAATATACATA+GGG | - | chr1_3:56607488-56607507 | Msa0127380:CDS | 25.0% |
| ! | GCAATATTGAATTCTTTCAT+TGG | - | chr1_3:56607637-56607656 | Msa0127380:intron | 25.0% |
| ! | TATTGAATTCTTTCATTGGA+AGG | - | chr1_3:56607641-56607660 | Msa0127380:intron | 25.0% |
| ! | TGAATGTTGTTGATATATCT+AGG | - | chr1_3:56607799-56607818 | Msa0127380:intron | 25.0% |
| ! | GAATGTTGTTGATATATCTA+GGG | - | chr1_3:56607800-56607819 | Msa0127380:intron | 25.0% |
| !!! | GATTTTATTGTTTTGTTTGC+AGG | - | chr1_3:56607981-56608000 | Msa0127380:intron | 25.0% |
| ! | TTCAAATTTATATACACCAC+AGG | + | chr1_3:56608147-56608166 | None:intergenic | 25.0% |
| ! | TAAAAATTCAAAGAAACGAG+TGG | + | chr1_3:56608175-56608194 | None:intergenic | 25.0% |
| !!! | TTGATTTTTCAAACTCATGA+TGG | - | chr1_3:56608250-56608269 | Msa0127380:CDS | 25.0% |
| ! | TGTAAAACTAGTGTGAAATT+AGG | + | chr1_3:56608317-56608336 | None:intergenic | 25.0% |
| ! | CAAGGAAAATAAATTAGTGA+TGG | - | chr1_3:56608374-56608393 | Msa0127380:intron | 25.0% |
| !!! | CAATAACTCTTTTATTTCCT+TGG | + | chr1_3:56608408-56608427 | None:intergenic | 25.0% |
| ! | CAAGGAAATAAAAGAGTTAT+TGG | - | chr1_3:56608406-56608425 | Msa0127380:intron | 25.0% |
| ! | AATTTAATGTTCATGTGATC+TGG | - | chr1_3:56608563-56608582 | Msa0127380:intron | 25.0% |
| !!! | TATACAACCAAATTTTTTCC+AGG | + | chr1_3:56608613-56608632 | None:intergenic | 25.0% |
| !!! | TTTCAAGCAGAAGTTTTATT+TGG | - | chr1_3:56609179-56609198 | Msa0127380:intron | 25.0% |
| ! | GCATTTGATCCTATTATATT+TGG | - | chr1_3:56609382-56609401 | Msa0127380:intron | 25.0% |
| ! | AATTAAGCATAGATAGAACA+CGG | + | chr1_3:56609678-56609697 | None:intergenic | 25.0% |
| ! | GCATTTGATCCTTATATATT+TGG | - | chr1_3:56609765-56609784 | Msa0127380:intron | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | - | chr1_3:56609876-56609895 | Msa0127380:CDS | 25.0% |
| ! | ATGATTATATATGCTATGGA+AGG | + | chr1_3:56610126-56610145 | None:intergenic | 25.0% |
| ! | TTCCATAGCATATATAATCA+TGG | - | chr1_3:56610125-56610144 | Msa0127380:CDS | 25.0% |
| ! | AAAAGATGAAGTAAAAGTAG+GGG | + | chr1_3:56610845-56610864 | None:intergenic | 25.0% |
| ! | CAAAAGATGAAGTAAAAGTA+GGG | + | chr1_3:56610846-56610865 | None:intergenic | 25.0% |
| ! | TCAAAAGATGAAGTAAAAGT+AGG | + | chr1_3:56610847-56610866 | None:intergenic | 25.0% |
| ! | TCACAAGAAAATATAACTGT+GGG | - | chr1_3:56610906-56610925 | Msa0127380:five_prime_UTR | 25.0% |
| ! | TTAATGCATTATATTGCAGT+TGG | - | chr1_3:56610947-56610966 | Msa0127380:intron | 25.0% |
| !! | CTTCATCTTTTTATTAGTCA+GGG | - | chr1_3:56611247-56611266 | Msa0127380:five_prime_UTR | 25.0% |
| !!! | CTTAAATTTTCAAGTGTCTC+GGG | + | chr1_3:56605010-56605029 | None:intergenic | 30.0% |
| ATTTATTCATTTAGGGAAGG+GGG | + | chr1_3:56605140-56605159 | None:intergenic | 30.0% | |
| TAATATGCTACAAGAATGGA+AGG | - | chr1_3:56605186-56605205 | Msa0127380:three_prime_UTR | 30.0% | |
| AATATGCTACAAGAATGGAA+GGG | - | chr1_3:56605187-56605206 | Msa0127380:three_prime_UTR | 30.0% | |
| ACATAAAAGATGAGTGTAAC+TGG | + | chr1_3:56605247-56605266 | None:intergenic | 30.0% | |
| TTGGACTGAATTTCATTAAC+AGG | - | chr1_3:56605320-56605339 | Msa0127380:intron | 30.0% | |
| TAGTATGAATGAAAGATACC+TGG | + | chr1_3:56605491-56605510 | None:intergenic | 30.0% | |
| CCGAAATAACATTTCAACAA+AGG | + | chr1_3:56605530-56605549 | None:intergenic | 30.0% | |
| ! | AGTTTTCTACTATGCACAAA+AGG | - | chr1_3:56605608-56605627 | Msa0127380:intron | 30.0% |
| ACGTGTCATGTTATAATACT+TGG | + | chr1_3:56605833-56605852 | None:intergenic | 30.0% | |
| AGGTTAACCTACGATAATAA+AGG | + | chr1_3:56605913-56605932 | None:intergenic | 30.0% | |
| AATCTAACCAAACTATCTAC+AGG | - | chr1_3:56605952-56605971 | Msa0127380:CDS | 30.0% | |
| ! | ATGCCCTTTTCATAGAAAAA+GGG | - | chr1_3:56606098-56606117 | Msa0127380:intron | 30.0% |
| GAATAAAAAAACACCTGATC+AGG | + | chr1_3:56606217-56606236 | None:intergenic | 30.0% | |
| CAACAAATTGAACACAAAAC+AGG | + | chr1_3:56606293-56606312 | None:intergenic | 30.0% | |
| !! | TGTTCAATTTGTTGACAACT+TGG | - | chr1_3:56606299-56606318 | Msa0127380:intron | 30.0% |
| ! | TGAATCATTTGATGCTGATT+TGG | - | chr1_3:56606412-56606431 | Msa0127380:intron | 30.0% |
| ! | ATATTTTCCTTCATCTAGGA+TGG | - | chr1_3:56606549-56606568 | Msa0127380:intron | 30.0% |
| !! | TATTTTCCTTCATCTAGGAT+GGG | - | chr1_3:56606550-56606569 | Msa0127380:intron | 30.0% |
| ! | AAACAATTCTTCAAGTTCAC+GGG | + | chr1_3:56606586-56606605 | None:intergenic | 30.0% |
| GCTTTCCTAATATTATGACA+CGG | - | chr1_3:56606630-56606649 | Msa0127380:intron | 30.0% | |
| AGATTCCGTGTCATAATATT+AGG | + | chr1_3:56606638-56606657 | None:intergenic | 30.0% | |
| CATGTAAATTATGTCATAGC+TGG | + | chr1_3:56606748-56606767 | None:intergenic | 30.0% | |
| CATTGTTCAACAAAAATGCA+AGG | + | chr1_3:56606939-56606958 | None:intergenic | 30.0% | |
| ACAAACATCATGTAAATCTG+AGG | + | chr1_3:56607036-56607055 | None:intergenic | 30.0% | |
| AGATTTACATGATGTTTGTC+TGG | - | chr1_3:56607037-56607056 | Msa0127380:intron | 30.0% | |
| TGCAAATAAATGCGAAACTT+AGG | + | chr1_3:56607203-56607222 | None:intergenic | 30.0% | |
| ATGATGTATGACTGTATGTA+TGG | - | chr1_3:56607346-56607365 | Msa0127380:intron | 30.0% | |
| ! | ATTATATGTTTTCTGGACAG+TGG | - | chr1_3:56607431-56607450 | Msa0127380:intron | 30.0% |
| ! | TTATATGTTTTCTGGACAGT+GGG | - | chr1_3:56607432-56607451 | Msa0127380:intron | 30.0% |
| GTGGAGAATCTAATATACAT+AGG | - | chr1_3:56607487-56607506 | Msa0127380:CDS | 30.0% | |
| ! | ATTCAATATTGCGGATTTTC+CGG | + | chr1_3:56607629-56607648 | None:intergenic | 30.0% |
| TATATTATCAGGAGTCTTCT+AGG | + | chr1_3:56607682-56607701 | None:intergenic | 30.0% | |
| GGATTATAAGCTTCAGAATA+TGG | + | chr1_3:56607756-56607775 | None:intergenic | 30.0% | |
| TAATAACTTCTTACTGTGAC+AGG | - | chr1_3:56607874-56607893 | Msa0127380:intron | 30.0% | |
| GACAAAAAAAATGAAGACTC+TGG | + | chr1_3:56607932-56607951 | None:intergenic | 30.0% | |
| !!! | ATTAAATATTTTGGTGCCTG+TGG | - | chr1_3:56608128-56608147 | Msa0127380:intron | 30.0% |
| !! | ATTCAGCCTAACGTTATTTT+AGG | + | chr1_3:56608215-56608234 | None:intergenic | 30.0% |
| ! | TTTTTGCTTATAAACGAGAC+TGG | + | chr1_3:56608288-56608307 | None:intergenic | 30.0% |
| AGTGAAGATGTTATTCAACA+TGG | - | chr1_3:56608460-56608479 | Msa0127380:CDS | 30.0% | |
| GTGAAGATGTTATTCAACAT+GGG | - | chr1_3:56608461-56608480 | Msa0127380:CDS | 30.0% | |
| TACTTAGTATGAGTTGCTTA+TGG | + | chr1_3:56608590-56608609 | None:intergenic | 30.0% | |
| CTAAGTACCTGGAAAAAATT+TGG | - | chr1_3:56608603-56608622 | Msa0127380:intron | 30.0% | |
| ATAAAACTGCCATTCAAAGA+TGG | + | chr1_3:56609122-56609141 | None:intergenic | 30.0% | |
| ATAAAACTTCTGCTTGAAAC+AGG | + | chr1_3:56609178-56609197 | None:intergenic | 30.0% | |
| TGGAAACTGTCTAATTGTAA+AGG | + | chr1_3:56609242-56609261 | None:intergenic | 30.0% | |
| !! | TGAAAGTGTTGTAATAAGAG+TGG | + | chr1_3:56609262-56609281 | None:intergenic | 30.0% |
| ACTTTCATGTGCATTAGTAT+AGG | - | chr1_3:56609275-56609294 | Msa0127380:intron | 30.0% | |
| CAACGACATAAAACAATATC+AGG | + | chr1_3:56609359-56609378 | None:intergenic | 30.0% | |
| ! | AATACTGTCTTTTCCATCTA+TGG | - | chr1_3:56609457-56609476 | Msa0127380:CDS | 30.0% |
| ! | ATACTGTCTTTTCCATCTAT+GGG | - | chr1_3:56609458-56609477 | Msa0127380:CDS | 30.0% |
| GAGTGTTAGAATAGATTGTT+AGG | - | chr1_3:56609517-56609536 | Msa0127380:intron | 30.0% | |
| TTCCTTGGCATATATAATCA+TGG | - | chr1_3:56609562-56609581 | Msa0127380:intron | 30.0% | |
| CAGTAGCTTCCAAATATATA+AGG | + | chr1_3:56609777-56609796 | None:intergenic | 30.0% | |
| TCTCAAATTATTAGCGATGT+CGG | + | chr1_3:56609845-56609864 | None:intergenic | 30.0% | |
| !!! | ACTGTTAGCTTTTCCATTTA+TGG | - | chr1_3:56609995-56610014 | Msa0127380:intron | 30.0% |
| !!! | CTGTTAGCTTTTCCATTTAT+GGG | - | chr1_3:56609996-56610015 | Msa0127380:intron | 30.0% |
| TTGTAGATGATACCCATAAA+TGG | + | chr1_3:56610011-56610030 | None:intergenic | 30.0% | |
| ATTTATGGGTATCATCTACA+AGG | - | chr1_3:56610010-56610029 | Msa0127380:intron | 30.0% | |
| ! | AATGATGTACTGATAAGCAT+AGG | - | chr1_3:56610033-56610052 | Msa0127380:intron | 30.0% |
| ! | ATGATGTACTGATAAGCATA+GGG | - | chr1_3:56610034-56610053 | Msa0127380:intron | 30.0% |
| TGCCATGATTATATATGCTA+TGG | + | chr1_3:56610130-56610149 | None:intergenic | 30.0% | |
| ATGTCACCCAAAATTTAAGT+AGG | + | chr1_3:56610516-56610535 | None:intergenic | 30.0% | |
| !! | TACTTAAATTTTGGGTGACA+TGG | - | chr1_3:56610515-56610534 | Msa0127380:intron | 30.0% |
| ! | ATCTGTCATTTATAACCTTG+AGG | - | chr1_3:56610596-56610615 | Msa0127380:CDS | 30.0% |
| ! | TGTTTCTATTGTGTTGATGA+TGG | - | chr1_3:56610657-56610676 | Msa0127380:CDS | 30.0% |
| !!! | TCTTTTGACTAGTTTTGTTC+TGG | - | chr1_3:56610859-56610878 | Msa0127380:exon | 30.0% |
| GTCACAAGAAAATATAACTG+TGG | - | chr1_3:56610905-56610924 | Msa0127380:five_prime_UTR | 30.0% | |
| ! | GCTAAAGGCTTTAACATTAA+AGG | - | chr1_3:56611103-56611122 | Msa0127380:intron | 30.0% |
| ! | GCTTCATCTTTTTATTAGTC+AGG | - | chr1_3:56611246-56611265 | Msa0127380:five_prime_UTR | 30.0% |
| AGATCATAACCTCTAAGTTG+CGG | + | chr1_3:56605054-56605073 | None:intergenic | 35.0% | |
| TTTATTCATTTAGGGAAGGG+GGG | + | chr1_3:56605139-56605158 | None:intergenic | 35.0% | |
| ATATGCTACAAGAATGGAAG+GGG | - | chr1_3:56605188-56605207 | Msa0127380:three_prime_UTR | 35.0% | |
| GGGGAAAACTTGATATAGAT+AGG | - | chr1_3:56605207-56605226 | Msa0127380:intron | 35.0% | |
| AATGTTCCAGTTATAGTGGT+CGG | - | chr1_3:56605345-56605364 | Msa0127380:intron | 35.0% | |
| GTGCATAGTAGAAAACTTCA+GGG | + | chr1_3:56605605-56605624 | None:intergenic | 35.0% | |
| TGTGCATAGTAGAAAACTTC+AGG | + | chr1_3:56605606-56605625 | None:intergenic | 35.0% | |
| TGATCAAATAAAGGAGCTGT+TGG | + | chr1_3:56605645-56605664 | None:intergenic | 35.0% | |
| CATGACACCTTTATTATCGT+AGG | - | chr1_3:56605903-56605922 | Msa0127380:CDS | 35.0% | |
| CATCTAACCTGTAGATAGTT+TGG | + | chr1_3:56605962-56605981 | None:intergenic | 35.0% | |
| AGAAATTGTGGGTGTAAAGA+AGG | - | chr1_3:56606006-56606025 | Msa0127380:CDS | 35.0% | |
| GTGCAAGATAAATTGTCTGA+AGG | - | chr1_3:56606031-56606050 | Msa0127380:CDS | 35.0% | |
| ! | CATGCCCTTTTCATAGAAAA+AGG | - | chr1_3:56606097-56606116 | Msa0127380:intron | 35.0% |
| ! | ACGCCCTTTTTCTATGAAAA+GGG | + | chr1_3:56606104-56606123 | None:intergenic | 35.0% |
| CCTAGATGAAGGAAAATATG+TGG | + | chr1_3:56606548-56606567 | None:intergenic | 35.0% | |
| ! | CCACATATTTTCCTTCATCT+AGG | - | chr1_3:56606545-56606564 | Msa0127380:intron | 35.0% |
| ! | AACAATTCTTCAAGTTCACG+GGG | + | chr1_3:56606585-56606604 | None:intergenic | 35.0% |
| ! | TTTTCAAATGTACACACGAC+AGG | - | chr1_3:56606671-56606690 | Msa0127380:intron | 35.0% |
| TTTCAAATGTACACACGACA+GGG | - | chr1_3:56606672-56606691 | Msa0127380:intron | 35.0% | |
| ! | CAATTTTAAATTGCAGTCCC+TGG | - | chr1_3:56606801-56606820 | Msa0127380:intron | 35.0% |
| TCATATAGATTTCCGATCCA+GGG | + | chr1_3:56606821-56606840 | None:intergenic | 35.0% | |
| GCTGTTGAAAGAAATGCATT+TGG | - | chr1_3:56606845-56606864 | Msa0127380:intron | 35.0% | |
| GTTGAAAGAAATGCATTTGG+AGG | - | chr1_3:56606848-56606867 | Msa0127380:intron | 35.0% | |
| CAACAAAAATGCAAGGAAGA+GGG | + | chr1_3:56606932-56606951 | None:intergenic | 35.0% | |
| TCAACAAAAATGCAAGGAAG+AGG | + | chr1_3:56606933-56606952 | None:intergenic | 35.0% | |
| GAACAATGTTCATAGAAGAG+TGG | - | chr1_3:56606951-56606970 | Msa0127380:intron | 35.0% | |
| AATGTTCATAGAAGAGTGGT+GGG | - | chr1_3:56606955-56606974 | Msa0127380:intron | 35.0% | |
| ATATGTTCGTATAAGAGTGG+TGG | - | chr1_3:56607122-56607141 | Msa0127380:intron | 35.0% | |
| TATGTTCGTATAAGAGTGGT+GGG | - | chr1_3:56607123-56607142 | Msa0127380:intron | 35.0% | |
| TATTAGATTCTCCACACTGA+AGG | + | chr1_3:56607482-56607501 | None:intergenic | 35.0% | |
| !! | TATTGCAGTGCTTCGTTTTT+GGG | - | chr1_3:56607593-56607612 | Msa0127380:CDS | 35.0% |
| GGGTACAATAATTACTTGAC+TGG | - | chr1_3:56607844-56607863 | Msa0127380:intron | 35.0% | |
| AAAAAATGAAGACTCTGGTG+CGG | + | chr1_3:56607927-56607946 | None:intergenic | 35.0% | |
| AAAAACTGCAATGTCACATG+AGG | + | chr1_3:56608085-56608104 | None:intergenic | 35.0% | |
| ! | TTGCAGTTTTTGTCCATGAT+AGG | - | chr1_3:56608094-56608113 | Msa0127380:intron | 35.0% |
| TAGGCTGAATACCACAATTT+CGG | - | chr1_3:56608225-56608244 | Msa0127380:CDS | 35.0% | |
| AAAAATCAACCCCGAAATTG+TGG | + | chr1_3:56608239-56608258 | None:intergenic | 35.0% | |
| AAGATGTTATTCAACATGGG+TGG | - | chr1_3:56608464-56608483 | Msa0127380:CDS | 35.0% | |
| TTAGCTGCAACTATAAGACA+GGG | + | chr1_3:56608747-56608766 | None:intergenic | 35.0% | |
| TCTTGTATAGCCAATGCAAA+TGG | + | chr1_3:56608783-56608802 | None:intergenic | 35.0% | |
| !! | ATTTGGCTCTACAAATCATC+TGG | - | chr1_3:56609196-56609215 | Msa0127380:intron | 35.0% |
| !! | TTTGGCTCTACAAATCATCT+GGG | - | chr1_3:56609197-56609216 | Msa0127380:intron | 35.0% |
| TTGTAGATGATACCCATAGA+TGG | + | chr1_3:56609473-56609492 | None:intergenic | 35.0% | |
| TTGTATTCTCATGTCTTCCT+TGG | - | chr1_3:56609547-56609566 | Msa0127380:intron | 35.0% | |
| TGCCATGATTATATATGCCA+AGG | + | chr1_3:56609567-56609586 | None:intergenic | 35.0% | |
| CTTTCATGCGCATTTAGTAT+AGG | - | chr1_3:56609651-56609670 | Msa0127380:intron | 35.0% | |
| CAGATTTGTAGCTAAAAACC+TGG | - | chr1_3:56609711-56609730 | Msa0127380:intron | 35.0% | |
| !! | GTAATTATAAGTGTCGGTGT+CGG | - | chr1_3:56609882-56609901 | Msa0127380:CDS | 35.0% |
| TGGCATATGTGATTTCTTGA+TGG | - | chr1_3:56610145-56610164 | Msa0127380:CDS | 35.0% | |
| AAACAACTTATCTTCGGACA+TGG | - | chr1_3:56610179-56610198 | Msa0127380:CDS | 35.0% | |
| !! | ATGTGTTTTGTAGGTTAGTC+AGG | - | chr1_3:56610204-56610223 | Msa0127380:CDS | 35.0% |
| ! | AACTTCACACTGATTGGTAT+AGG | + | chr1_3:56610247-56610266 | None:intergenic | 35.0% |
| ATACCAATCAGTGTGAAGTT+AGG | - | chr1_3:56610247-56610266 | Msa0127380:CDS | 35.0% | |
| TACCAATCAGTGTGAAGTTA+GGG | - | chr1_3:56610248-56610267 | Msa0127380:CDS | 35.0% | |
| !! | GTTTCTGGAATGCTTAAATG+AGG | + | chr1_3:56610319-56610338 | None:intergenic | 35.0% |
| AGATCTTGTTAATCTGCTTG+CGG | + | chr1_3:56610357-56610376 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTGTTCTCTCTTT+TGG | - | chr1_3:56610545-56610564 | Msa0127380:CDS | 35.0% |
| TTTATAACCTTGAGGTGAAG+TGG | - | chr1_3:56610604-56610623 | Msa0127380:CDS | 35.0% | |
| !! | TTCTATTGTGTTGATGATGG+AGG | - | chr1_3:56610660-56610679 | Msa0127380:CDS | 35.0% |
| AACATGAAACAAAACCAGCA+AGG | + | chr1_3:56610718-56610737 | None:intergenic | 35.0% | |
| TATTTCTTGTTGGGTAGAGA+TGG | - | chr1_3:56610748-56610767 | Msa0127380:intron | 35.0% | |
| GCATTATATTGCAGTTGGAA+CGG | - | chr1_3:56610952-56610971 | Msa0127380:intron | 35.0% | |
| TCGTGATATATACCTTGATC+TGG | - | chr1_3:56611063-56611082 | Msa0127380:intron | 35.0% | |
| ATTGCAAACTCTATTGCAGA+TGG | + | chr1_3:56611139-56611158 | None:intergenic | 35.0% | |
| ACATGCATAAGTGAGGACAA+CGG | + | chr1_3:56604981-56605000 | None:intergenic | 40.0% | |
| GTCTATCACATGCATAAGTG+AGG | + | chr1_3:56604988-56605007 | None:intergenic | 40.0% | |
| GGTGAATGTTCCAGTTATAG+TGG | - | chr1_3:56605341-56605360 | Msa0127380:intron | 40.0% | |
| TTTGCGAGATGAAAATCAGC+AGG | - | chr1_3:56605380-56605399 | Msa0127380:intron | 40.0% | |
| CAATGCAAGTTTCAATCTCG+CGG | + | chr1_3:56605446-56605465 | None:intergenic | 40.0% | |
| TTTATTCTCTGCGACTCAGA+CGG | - | chr1_3:56605714-56605733 | Msa0127380:intron | 40.0% | |
| ! | TGCTGAACTGAACGATTTTC+AGG | - | chr1_3:56605755-56605774 | Msa0127380:intron | 40.0% |
| TTTACACCCACAATTTCTGC+TGG | + | chr1_3:56606004-56606023 | None:intergenic | 40.0% | |
| ! | GACGCCCTTTTTCTATGAAA+AGG | + | chr1_3:56606105-56606124 | None:intergenic | 40.0% |
| AGGAAAGCAATCTACCTTTC+CGG | + | chr1_3:56606618-56606637 | None:intergenic | 40.0% | |
| TATGACACGGAATCTTCTGT+TGG | - | chr1_3:56606643-56606662 | Msa0127380:intron | 40.0% | |
| ATGACACGGAATCTTCTGTT+GGG | - | chr1_3:56606644-56606663 | Msa0127380:intron | 40.0% | |
| ACAGTGAAGAAGCAAAGACT+CGG | + | chr1_3:56606719-56606738 | None:intergenic | 40.0% | |
| AATTTACATGTGAGGACCCT+TGG | - | chr1_3:56606758-56606777 | Msa0127380:intron | 40.0% | |
| TTAAATTGCAGTCCCTGGAT+CGG | - | chr1_3:56606806-56606825 | Msa0127380:intron | 40.0% | |
| CTCATATAGATTTCCGATCC+AGG | + | chr1_3:56606822-56606841 | None:intergenic | 40.0% | |
| CTGGATCGGAAATCTATATG+AGG | - | chr1_3:56606820-56606839 | Msa0127380:intron | 40.0% | |
| CAATGTTCATAGAAGAGTGG+TGG | - | chr1_3:56606954-56606973 | Msa0127380:intron | 40.0% | |
| ACTCATGACACTTCTAAACC+CGG | - | chr1_3:56607456-56607475 | Msa0127380:intron | 40.0% | |
| CTAATATACATAGGGTTCCC+TGG | - | chr1_3:56607496-56607515 | Msa0127380:CDS | 40.0% | |
| ! | GTATTGCAGTGCTTCGTTTT+TGG | - | chr1_3:56607592-56607611 | Msa0127380:CDS | 40.0% |
| ACAGCAATAAGACATGATGC+CGG | + | chr1_3:56607716-56607735 | None:intergenic | 40.0% | |
| TGCTGTTGAATTCATACTGC+AGG | - | chr1_3:56607730-56607749 | Msa0127380:intron | 40.0% | |
| AGCTTATAATCCAACCAACG+AGG | - | chr1_3:56607764-56607783 | Msa0127380:intron | 40.0% | |
| GTGTTGAAAGAGATTCCAGA+AGG | - | chr1_3:56608021-56608040 | Msa0127380:intron | 40.0% | |
| ATATCAACGGTCACCTATCA+TGG | + | chr1_3:56608110-56608129 | None:intergenic | 40.0% | |
| AGGCTGAATACCACAATTTC+GGG | - | chr1_3:56608226-56608245 | Msa0127380:CDS | 40.0% | |
| TGCTTATAAACGAGACTGGA+GGG | + | chr1_3:56608284-56608303 | None:intergenic | 40.0% | |
| TTGCTTATAAACGAGACTGG+AGG | + | chr1_3:56608285-56608304 | None:intergenic | 40.0% | |
| ! | TAGTGATGGAAGATGTTCCA+AGG | - | chr1_3:56608388-56608407 | Msa0127380:intron | 40.0% |
| AGCAACTCATACTAAGTACC+TGG | - | chr1_3:56608592-56608611 | Msa0127380:intron | 40.0% | |
| !! | GAGGGTATCATATGATCTCT+TGG | - | chr1_3:56608680-56608699 | Msa0127380:CDS | 40.0% |
| ! | TGGAGAAAATACTGGCTATG+AGG | - | chr1_3:56608719-56608738 | Msa0127380:CDS | 40.0% |
| CTTAGCTGCAACTATAAGAC+AGG | + | chr1_3:56608748-56608767 | None:intergenic | 40.0% | |
| CTGTCTTATAGTTGCAGCTA+AGG | - | chr1_3:56608746-56608765 | Msa0127380:CDS | 40.0% | |
| TGATCTGGATCCATTTGCAT+TGG | - | chr1_3:56608770-56608789 | Msa0127380:CDS | 40.0% | |
| TGGCTATACAAGAGTCAACT+AGG | - | chr1_3:56608790-56608809 | Msa0127380:CDS | 40.0% | |
| GGCTATACAAGAGTCAACTA+GGG | - | chr1_3:56608791-56608810 | Msa0127380:CDS | 40.0% | |
| TAGAGATTTAATGCGGCGAA+TGG | - | chr1_3:56608876-56608895 | Msa0127380:intron | 40.0% | |
| GATGGCATACAGCAGTAAAA+TGG | + | chr1_3:56609104-56609123 | None:intergenic | 40.0% | |
| TGCTGTATGCCATCTTTGAA+TGG | - | chr1_3:56609110-56609129 | Msa0127380:intron | 40.0% | |
| AGCTAAAAACCTGGTACTCT+TGG | - | chr1_3:56609720-56609739 | Msa0127380:intron | 40.0% | |
| !! | AAATGAACTCCAAGAGTACC+AGG | + | chr1_3:56609732-56609751 | None:intergenic | 40.0% |
| TAAGCATAGCTGAGTGTTAG+AGG | - | chr1_3:56610069-56610088 | Msa0127380:intron | 40.0% | |
| ! | GACATGGCAATGTGTTTTGT+AGG | - | chr1_3:56610195-56610214 | Msa0127380:CDS | 40.0% |
| ! | TTTGTAGGTTAGTCAGGACA+TGG | - | chr1_3:56610210-56610229 | Msa0127380:CDS | 40.0% |
| ! | TTGTAGGTTAGTCAGGACAT+GGG | - | chr1_3:56610211-56610230 | Msa0127380:CDS | 40.0% |
| ACCAATCAGTGTGAAGTTAG+GGG | - | chr1_3:56610249-56610268 | Msa0127380:CDS | 40.0% | |
| GATCTTGTTAATCTGCTTGC+GGG | + | chr1_3:56610356-56610375 | None:intergenic | 40.0% | |
| ! | CGATCTCTTTTGTGTGTTTC+AGG | - | chr1_3:56610382-56610401 | Msa0127380:intron | 40.0% |
| GTTATTCTGATTCACCTTGC+TGG | - | chr1_3:56610701-56610720 | Msa0127380:intron | 40.0% | |
| CTTACAGGATATATGCTGCA+AGG | - | chr1_3:56610999-56611018 | Msa0127380:intron | 40.0% | |
| ! | GAAGAGTGCATCTGGTTAAA+TGG | - | chr1_3:56611021-56611040 | Msa0127380:intron | 40.0% |
| TGCATCTGGTTAAATGGCAA+AGG | - | chr1_3:56611027-56611046 | Msa0127380:intron | 40.0% | |
| AGCAGACTAAATCCAGATCA+AGG | + | chr1_3:56611078-56611097 | None:intergenic | 40.0% | |
| TCTGGATTTAGTCTGCTCTT+TGG | - | chr1_3:56611081-56611100 | Msa0127380:intron | 40.0% | |
| TTAGTCTGCTCTTTGGCTAA+AGG | - | chr1_3:56611088-56611107 | Msa0127380:intron | 40.0% | |
| TTTATTAGTCAGGGCCTTCA+TGG | - | chr1_3:56611256-56611275 | Msa0127380:five_prime_UTR | 40.0% | |
| TCATAACCTCTAAGTTGCGG+AGG | + | chr1_3:56605051-56605070 | None:intergenic | 45.0% | |
| TTGCAACCGACCACTATAAC+TGG | + | chr1_3:56605354-56605373 | None:intergenic | 45.0% | |
| TCGCGGAACTGTTGCATTAT+TGG | + | chr1_3:56605429-56605448 | None:intergenic | 45.0% | |
| GCATTGAGTGTTCAGCATCT+AGG | - | chr1_3:56605460-56605479 | Msa0127380:intron | 45.0% | |
| TTCAGCATCTAGGCTTATCC+AGG | - | chr1_3:56605470-56605489 | Msa0127380:intron | 45.0% | |
| ! | ACAATTTCTGCTGGTTGCAG+AGG | + | chr1_3:56605995-56606014 | None:intergenic | 45.0% |
| TCTGCAACCAGCAGAAATTG+TGG | - | chr1_3:56605994-56606013 | Msa0127380:CDS | 45.0% | |
| CTGCAACCAGCAGAAATTGT+GGG | - | chr1_3:56605995-56606014 | Msa0127380:CDS | 45.0% | |
| !! | TCTGAAGGTGTTAACGAACG+AGG | - | chr1_3:56606046-56606065 | Msa0127380:CDS | 45.0% |
| CGAACGAGGACTTACTTTGA+CGG | - | chr1_3:56606060-56606079 | Msa0127380:CDS | 45.0% | |
| GAACGAGGACTTACTTTGAC+GGG | - | chr1_3:56606061-56606080 | Msa0127380:intron | 45.0% | |
| TGGACTGTGCTCAGAAAGTT+CGG | - | chr1_3:56606136-56606155 | Msa0127380:intron | 45.0% | |
| CAACATCCCATCCTAGATGA+AGG | + | chr1_3:56606559-56606578 | None:intergenic | 45.0% | |
| ! | AGAATTGTTTTCCACTGCCC+CGG | - | chr1_3:56606596-56606615 | Msa0127380:intron | 45.0% |
| GAAAGCAATCTACCTTTCCG+GGG | + | chr1_3:56606616-56606635 | None:intergenic | 45.0% | |
| GGAAAGCAATCTACCTTTCC+GGG | + | chr1_3:56606617-56606636 | None:intergenic | 45.0% | |
| ! | GCTTGATGCATTTTTGTCCG+AGG | - | chr1_3:56606877-56606896 | Msa0127380:intron | 45.0% |
| AATAGAAGACTCGTGCACCT+CGG | + | chr1_3:56606897-56606916 | None:intergenic | 45.0% | |
| !! | ATAAGAGTGGTGGGCTTCTA+TGG | - | chr1_3:56607132-56607151 | Msa0127380:intron | 45.0% |
| CAATGTCTGTAGAAGAGTCG+CGG | - | chr1_3:56607256-56607275 | Msa0127380:intron | 45.0% | |
| AATGTCTGTAGAAGAGTCGC+GGG | - | chr1_3:56607257-56607276 | Msa0127380:intron | 45.0% | |
| ! | CAGCAGATAATGGTTCACCA+GGG | + | chr1_3:56607516-56607535 | None:intergenic | 45.0% |
| ! | ACAGCAGATAATGGTTCACC+AGG | + | chr1_3:56607517-56607536 | None:intergenic | 45.0% |
| !! | GTTTTTGGGCCTAGAAAGTC+CGG | - | chr1_3:56607607-56607626 | Msa0127380:CDS | 45.0% |
| AGACTTGCAACTTCACCTTC+TGG | + | chr1_3:56608039-56608058 | None:intergenic | 45.0% | |
| AGAAGGTGAAGTTGCAAGTC+TGG | - | chr1_3:56608038-56608057 | Msa0127380:intron | 45.0% | |
| GGCTGAATACCACAATTTCG+GGG | - | chr1_3:56608227-56608246 | Msa0127380:CDS | 45.0% | |
| CTTATAAACGAGACTGGAGG+GGG | + | chr1_3:56608282-56608301 | None:intergenic | 45.0% | |
| GCTTATAAACGAGACTGGAG+GGG | + | chr1_3:56608283-56608302 | None:intergenic | 45.0% | |
| TTAGGTCTGACGAGTCTTCA+TGG | - | chr1_3:56608658-56608677 | Msa0127380:CDS | 45.0% | |
| GATCTCTTGGTACAGATTGC+TGG | - | chr1_3:56608693-56608712 | Msa0127380:CDS | 45.0% | |
| TTGGTACAGATTGCTGGTCA+TGG | - | chr1_3:56608699-56608718 | Msa0127380:CDS | 45.0% | |
| GCTGGTCATGGAGAAAATAC+TGG | - | chr1_3:56608711-56608730 | Msa0127380:CDS | 45.0% | |
| AGTTGCAGCTAAGGATGATC+TGG | - | chr1_3:56608755-56608774 | Msa0127380:CDS | 45.0% | |
| TCTAACACTCAGCTGTGCTT+TGG | + | chr1_3:56609507-56609526 | None:intergenic | 45.0% | |
| ! | GACGGCTCTTTTTCTTGACA+AGG | + | chr1_3:56609596-56609615 | None:intergenic | 45.0% |
| GACTTGCAAGCTATGAAGCA+CGG | - | chr1_3:56609796-56609815 | Msa0127380:intron | 45.0% | |
| CAAGCTATGAAGCACGGATA+TGG | - | chr1_3:56609802-56609821 | Msa0127380:intron | 45.0% | |
| TGCTTGCAAGCTATGAAGCA+CGG | + | chr1_3:56609954-56609973 | None:intergenic | 45.0% | |
| ! | GCTTCATAGCTTGCAAGCAA+AGG | - | chr1_3:56609955-56609974 | Msa0127380:intron | 45.0% |
| GAGTGTTAGAGGAGATTGTC+AGG | - | chr1_3:56610080-56610099 | Msa0127380:CDS | 45.0% | |
| TCCCCTAACTTCACACTGAT+TGG | + | chr1_3:56610253-56610272 | None:intergenic | 45.0% | |
| GCTCAGCAGCAGTTACAATT+CGG | + | chr1_3:56610294-56610313 | None:intergenic | 45.0% | |
| AGCATTCCAGAAACTGAAGC+TGG | - | chr1_3:56610325-56610344 | Msa0127380:intron | 45.0% | |
| GTCTTTCCAGCTTCAGTTTC+TGG | + | chr1_3:56610334-56610353 | None:intergenic | 45.0% | |
| ATAACCTTGAGGTGAAGTGG+TGG | - | chr1_3:56610607-56610626 | Msa0127380:CDS | 45.0% | |
| CTTGTTGGGTAGAGATGGTT+AGG | - | chr1_3:56610753-56610772 | Msa0127380:intron | 45.0% | |
| TTGGGTAGAGATGGTTAGGT+AGG | - | chr1_3:56610757-56610776 | Msa0127380:intron | 45.0% | |
| TGGGTAGAGATGGTTAGGTA+GGG | - | chr1_3:56610758-56610777 | Msa0127380:intron | 45.0% | |
| ! | AATGGCAAAGGCTTTGTGCA+TGG | - | chr1_3:56611039-56611058 | Msa0127380:intron | 45.0% |
| ! | ATGGCAAAGGCTTTGTGCAT+GGG | - | chr1_3:56611040-56611059 | Msa0127380:intron | 45.0% |
| !! | AAAATAAAAACTATAAATTT+AGG | - | chr1_3:56608429-56608448 | Msa0127380:intron | 5.0% |
| !! | AAATAAAAACTATAAATTTA+GGG | - | chr1_3:56608430-56608449 | Msa0127380:intron | 5.0% |
| TTCATTTAGGGAAGGGGGGA+GGG | + | chr1_3:56605135-56605154 | None:intergenic | 50.0% | |
| ATTCATTTAGGGAAGGGGGG+AGG | + | chr1_3:56605136-56605155 | None:intergenic | 50.0% | |
| TATAGTGGTCGGTTGCAAGC+TGG | - | chr1_3:56605356-56605375 | Msa0127380:intron | 50.0% | |
| TTGGCGACATCACCTGTTCT+AGG | + | chr1_3:56605410-56605429 | None:intergenic | 50.0% | |
| !! | CTCTAAAGCCTCGATGTGTG+CGG | - | chr1_3:56605676-56605695 | Msa0127380:intron | 50.0% |
| ! | TCTAAAGCCTCGATGTGTGC+GGG | - | chr1_3:56605677-56605696 | Msa0127380:intron | 50.0% |
| !! | AAGGGCGTCTTGAGACTACA+TGG | - | chr1_3:56606116-56606135 | Msa0127380:intron | 50.0% |
| ! | TCAGGAGTGCGCTTCAAAGT+TGG | + | chr1_3:56606199-56606218 | None:intergenic | 50.0% |
| ! | TTTGAAGCGCACTCCTGATC+AGG | - | chr1_3:56606201-56606220 | Msa0127380:intron | 50.0% |
| TTCAGGGTCACATGCGCAAA+AGG | + | chr1_3:56606443-56606462 | None:intergenic | 50.0% | |
| AGAAGAGTCGCGGGTTTCTA+TGG | - | chr1_3:56607266-56607285 | Msa0127380:intron | 50.0% | |
| AGATTCTCCACACTGAAGGC+CGG | + | chr1_3:56607478-56607497 | None:intergenic | 50.0% | |
| GTCACACGGACAGCAGATAA+TGG | + | chr1_3:56607526-56607545 | None:intergenic | 50.0% | |
| TATCTGCTGTCCGTGTGACT+AGG | - | chr1_3:56607527-56607546 | Msa0127380:CDS | 50.0% | |
| ! | GCGGATTTTCCGGACTTTCT+AGG | + | chr1_3:56607619-56607638 | None:intergenic | 50.0% |
| GCATAACGATCCTCGTTGGT+TGG | + | chr1_3:56607777-56607796 | None:intergenic | 50.0% | |
| CACAGCATAACGATCCTCGT+TGG | + | chr1_3:56607781-56607800 | None:intergenic | 50.0% | |
| AGGTGAAGTTGCAAGTCTGG+TGG | - | chr1_3:56608041-56608060 | Msa0127380:intron | 50.0% | |
| TGAGGCCAAAGACTCCTTGT+CGG | + | chr1_3:56608067-56608086 | None:intergenic | 50.0% | |
| GTCTGACGAGTCTTCATGGA+GGG | - | chr1_3:56608662-56608681 | Msa0127380:CDS | 50.0% | |
| ! | TGCGGCGAATGGACACATTT+TGG | - | chr1_3:56608887-56608906 | Msa0127380:intron | 50.0% |
| CATTAGGCATGTCCTCGTGT+CGG | + | chr1_3:56609921-56609940 | None:intergenic | 50.0% | |
| TAGTCAGGACATGGGAGTAG+AGG | - | chr1_3:56610219-56610238 | Msa0127380:CDS | 50.0% | |
| CAGCAGCAGTTACAATTCGG+CGG | + | chr1_3:56610291-56610310 | None:intergenic | 50.0% | |
| ATAGCCACCACTTCACCTCA+AGG | + | chr1_3:56610614-56610633 | None:intergenic | 50.0% | |
| TATTGCAGTTGGAACGGCAG+TGG | - | chr1_3:56610958-56610977 | Msa0127380:intron | 50.0% | |
| ! | TTGTTGGGATCGGTGCTTAC+AGG | - | chr1_3:56610984-56611003 | Msa0127380:intron | 50.0% |
| CCTCTAAGTTGCGGAGGTGA+GGG | + | chr1_3:56605045-56605064 | None:intergenic | 55.0% | |
| ACCTCTAAGTTGCGGAGGTG+AGG | + | chr1_3:56605046-56605065 | None:intergenic | 55.0% | |
| TCATTTAGGGAAGGGGGGAG+GGG | + | chr1_3:56605134-56605153 | None:intergenic | 55.0% | |
| TCAGCAGGTGAGCCTAGAAC+AGG | - | chr1_3:56605395-56605414 | Msa0127380:intron | 55.0% | |
| TTCAAAGCCCGCACACATCG+AGG | + | chr1_3:56605687-56605706 | None:intergenic | 55.0% | |
| !! | GATGTGTGCGGGCTTTGAAG+CGG | - | chr1_3:56605688-56605707 | Msa0127380:intron | 55.0% |
| ! | TGTTTTCCACTGCCCCGGAA+AGG | - | chr1_3:56606601-56606620 | Msa0127380:intron | 55.0% |
| AATCTACCTTTCCGGGGCAG+TGG | + | chr1_3:56606610-56606629 | None:intergenic | 55.0% | |
| !! | AGAAGAGTGGTGGGCTTCCA+TGG | - | chr1_3:56606964-56606983 | Msa0127380:intron | 55.0% |
| !! | GAGTGGTGGGCTTCTATGGA+TGG | - | chr1_3:56607136-56607155 | Msa0127380:intron | 55.0% |
| TCTAAACCCGGCCTTCAGTG+TGG | - | chr1_3:56607468-56607487 | Msa0127380:intron | 55.0% | |
| GATTCTCCACACTGAAGGCC+GGG | + | chr1_3:56607477-56607496 | None:intergenic | 55.0% | |
| GGTCTGACGAGTCTTCATGG+AGG | - | chr1_3:56608661-56608680 | Msa0127380:CDS | 55.0% | |
| CATGACACATGTCCGACACG+AGG | - | chr1_3:56609906-56609925 | Msa0127380:CDS | 55.0% | |
| ACGAGGACATGCCTAATGCC+AGG | - | chr1_3:56609923-56609942 | Msa0127380:intron | 55.0% | |
| CTATGAAGCACGGACACTCC+TGG | + | chr1_3:56609944-56609963 | None:intergenic | 55.0% | |
| ! | GCTGCAAGGAAGAGTGCATC+TGG | - | chr1_3:56611013-56611032 | Msa0127380:intron | 55.0% |
| CCCTCACCTCCGCAACTTAG+AGG | - | chr1_3:56605042-56605061 | Msa0127380:three_prime_UTR | 60.0% | |
| ATTTAGGGAAGGGGGGAGGG+GGG | + | chr1_3:56605132-56605151 | None:intergenic | 60.0% | |
| CATTTAGGGAAGGGGGGAGG+GGG | + | chr1_3:56605133-56605152 | None:intergenic | 60.0% | |
| CTCTGCGACTCAGACGGAGA+TGG | - | chr1_3:56605720-56605739 | Msa0127380:intron | 60.0% | |
| CGCGTCGCTTCCTAGTCACA+CGG | + | chr1_3:56607540-56607559 | None:intergenic | 60.0% | |
| TGCAAGTCTGGTGGCCGACA+AGG | - | chr1_3:56608050-56608069 | Msa0127380:intron | 60.0% | |
| GGTGGCCGACAAGGAGTCTT+TGG | - | chr1_3:56608059-56608078 | Msa0127380:intron | 60.0% | |
| GCACGGACACTCCTGGCATT+AGG | + | chr1_3:56609937-56609956 | None:intergenic | 60.0% | |
| TGCAGTTGGAACGGCAGTGG+CGG | - | chr1_3:56610961-56610980 | Msa0127380:intron | 60.0% | |
| GAACGGCAGTGGCGGTTGTT+GGG | - | chr1_3:56610969-56610988 | Msa0127380:intron | 60.0% | |
| GCAGTGGCGGTTGTTGGGAT+CGG | - | chr1_3:56610974-56610993 | Msa0127380:intron | 60.0% | |
| GGAACGGCAGTGGCGGTTGT+TGG | - | chr1_3:56610968-56610987 | Msa0127380:intron | 65.0% | |
| GAAGGGGGGAGGGGGGCTAA+AGG | + | chr1_3:56605125-56605144 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56604965 | 56611331 | 56604965 | ID=Msa0127380;Name=Msa0127380 |
| chr1_3 | mRNA | 56604965 | 56611331 | 56604965 | ID=Msa0127380-mRNA-1;Parent=Msa0127380;Name=Msa0127380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=177|0.92|0.92|1|0.84|0.85|14|253|511 |
| chr1_3 | exon | 56604965 | 56605217 | 56604965 | ID=Msa0127380-mRNA-1:exon:17978;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56605257 | 56605330 | 56605257 | ID=Msa0127380-mRNA-1:exon:17977;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56605893 | 56606079 | 56605893 | ID=Msa0127380-mRNA-1:exon:17976;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56607484 | 56607634 | 56607484 | ID=Msa0127380-mRNA-1:exon:17975;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56608181 | 56608293 | 56608181 | ID=Msa0127380-mRNA-1:exon:17974;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56608451 | 56608544 | 56608451 | ID=Msa0127380-mRNA-1:exon:17973;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56608634 | 56608845 | 56608634 | ID=Msa0127380-mRNA-1:exon:17972;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56609398 | 56609479 | 56609398 | ID=Msa0127380-mRNA-1:exon:17971;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56609674 | 56609729 | 56609674 | ID=Msa0127380-mRNA-1:exon:17970;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56609863 | 56609931 | 56609863 | ID=Msa0127380-mRNA-1:exon:17969;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56610074 | 56610322 | 56610074 | ID=Msa0127380-mRNA-1:exon:17968;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56610520 | 56610696 | 56610520 | ID=Msa0127380-mRNA-1:exon:17967;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56610805 | 56610954 | 56610805 | ID=Msa0127380-mRNA-1:exon:17966;Parent=Msa0127380-mRNA-1 |
| chr1_3 | exon | 56611233 | 56611331 | 56611233 | ID=Msa0127380-mRNA-1:exon:17965;Parent=Msa0127380-mRNA-1 |
| chr1_3 | five_prime_UTR | 56611233 | 56611331 | 56611233 | ID=Msa0127380-mRNA-1:five_prime_utr;Parent=Msa0127380-mRNA-1 |
| chr1_3 | five_prime_UTR | 56610877 | 56610954 | 56610877 | ID=Msa0127380-mRNA-1:five_prime_utr;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56610805 | 56610876 | 56610805 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56610520 | 56610696 | 56610520 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56610074 | 56610322 | 56610074 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56609863 | 56609931 | 56609863 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56609674 | 56609729 | 56609674 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56609398 | 56609479 | 56609398 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56608634 | 56608845 | 56608634 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56608451 | 56608544 | 56608451 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56608181 | 56608293 | 56608181 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56607484 | 56607634 | 56607484 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56605893 | 56606079 | 56605893 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | CDS | 56605257 | 56605330 | 56605257 | ID=Msa0127380-mRNA-1:cds;Parent=Msa0127380-mRNA-1 |
| chr1_3 | three_prime_UTR | 56604965 | 56605217 | 56604965 | ID=Msa0127380-mRNA-1:three_prime_utr;Parent=Msa0127380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
