Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417780 | sp|Q8RXF8|MIRO1_ARATH | 68.552 | 601 | 178 | 2 | 24 | 622 | 57 | 648 | 0.0 | 835 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417780 | G7I836 | 92.355 | 654 | 10 | 2 | 1 | 622 | 1 | 646 | 0.0 | 1219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033020 | Msa1417780 | 0.923891 | 1.459025e-89 | -8.615850e-47 |
| Msa0127380 | Msa1417780 | 0.947297 | 8.848760e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417780 | MtrunA17_Chr1g0191811 | 92.355 | 654 | 10 | 2 | 1 | 622 | 1 | 646 | 0.0 | 1219 |
| Msa1417780 | MtrunA17_Chr5g0413741 | 72.241 | 580 | 151 | 3 | 26 | 604 | 85 | 655 | 0.0 | 866 |
| Msa1417780 | MtrunA17_Chr5g0417151 | 69.676 | 587 | 133 | 3 | 45 | 594 | 39 | 617 | 0.0 | 817 |
| Msa1417780 | MtrunA17_Chr7g0259771 | 55.426 | 599 | 258 | 2 | 25 | 622 | 49 | 639 | 0.0 | 716 |
| Msa1417780 | MtrunA17_Chr4g0073381 | 60.399 | 601 | 219 | 5 | 26 | 620 | 1 | 588 | 0.0 | 715 |
| Msa1417780 | MtrunA17_Chr4g0073061 | 58.261 | 575 | 182 | 4 | 26 | 568 | 62 | 610 | 0.0 | 639 |
| Msa1417780 | MtrunA17_Chr1g0185591 | 52.212 | 565 | 261 | 2 | 27 | 590 | 55 | 611 | 0.0 | 616 |
| Msa1417780 | MtrunA17_Chr5g0413461 | 68.613 | 411 | 115 | 2 | 195 | 605 | 4 | 400 | 0.0 | 564 |
| Msa1417780 | MtrunA17_Chr5g0413771 | 67.917 | 240 | 69 | 1 | 383 | 622 | 1 | 232 | 6.43e-105 | 317 |
| Msa1417780 | MtrunA17_Chr8g0338031 | 38.776 | 245 | 126 | 6 | 24 | 263 | 87 | 312 | 1.80e-38 | 148 |
| Msa1417780 | MtrunA17_Chr5g0413781 | 56.075 | 107 | 20 | 1 | 240 | 346 | 1 | 80 | 9.80e-28 | 107 |
| Msa1417780 | MtrunA17_Chr4g0069591 | 51.190 | 84 | 22 | 2 | 553 | 619 | 2 | 83 | 5.11e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417780 | AT5G27540.1 | 68.552 | 601 | 178 | 2 | 24 | 622 | 57 | 648 | 0.0 | 835 |
| Msa1417780 | AT5G27540.2 | 68.552 | 601 | 178 | 2 | 24 | 622 | 57 | 648 | 0.0 | 835 |
| Msa1417780 | AT3G63150.1 | 57.309 | 602 | 248 | 2 | 20 | 620 | 50 | 643 | 0.0 | 730 |
| Msa1417780 | AT3G05310.1 | 52.903 | 620 | 278 | 7 | 7 | 620 | 37 | 648 | 0.0 | 660 |
| Msa1417780 | AT3G05310.3 | 54.795 | 511 | 217 | 7 | 116 | 620 | 1 | 503 | 0.0 | 561 |
| Msa1417780 | AT3G05310.2 | 55.215 | 489 | 205 | 7 | 116 | 598 | 1 | 481 | 0.0 | 534 |
Find 148 sgRNAs with CRISPR-Local
Find 453 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTCCAGCTTCAGTTTC+TGG | 0.055140 | tig0024517:-36027 | Msa1417780:intergenic |
| GCTAAAGGCTTTAACATTAA+AGG | 0.148261 | tig0024517:+36799 | Msa1417780:three_prime_UTR |
| TCGCGGAACTGTTGCATTAT+TGG | 0.162225 | tig0024517:-31122 | Msa1417780:intergenic |
| TTGAAAATTTAAGTACATTT+TGG | 0.188192 | tig0024517:+30714 | Msa1417780:CDS |
| TTGGCGACATCACCTGTTCT+AGG | 0.278809 | tig0024517:-31103 | Msa1417780:intergenic |
| GGATTATAAGCTTCAGAATA+TGG | 0.283134 | tig0024517:-33449 | Msa1417780:intergenic |
| TAAATGTTGTTGATATTTCT+AGG | 0.292658 | tig0024517:+33519 | Msa1417780:CDS |
| TGAATCATTTGATGCTGATT+TGG | 0.301248 | tig0024517:+32108 | Msa1417780:CDS |
| AGGAAAGCAATCTACCTTTC+CGG | 0.302489 | tig0024517:-32311 | Msa1417780:intergenic |
| TGTGCATAGTAGAAAACTTC+AGG | 0.319763 | tig0024517:-31299 | Msa1417780:intergenic |
| GGAAAGCAATCTACCTTTCC+GGG | 0.324845 | tig0024517:-32310 | Msa1417780:intergenic |
| TCTGGATTTAGTCTGCTCTT+TGG | 0.336914 | tig0024517:+36777 | Msa1417780:three_prime_UTR |
| CCCTCACCTCCGCAACTTAG+AGG | 0.339641 | tig0024517:+30739 | Msa1417780:CDS |
| GGTGGCCGACAAGGAGTCTT+TGG | 0.356422 | tig0024517:+33755 | Msa1417780:CDS |
| GGAACGGCAGTGGCGGTTGT+TGG | 0.364982 | tig0024517:+36664 | Msa1417780:CDS |
| TTGTTGGGATCGGTGCTTAC+AGG | 0.370590 | tig0024517:+36680 | Msa1417780:CDS |
| ATACCAATCAGTGTGAAGTT+AGG | 0.375933 | tig0024517:+35943 | Msa1417780:CDS |
| AGAAGGTGAAGTTGCAAGTC+TGG | 0.383575 | tig0024517:+33734 | Msa1417780:CDS |
| TTTATTAGTCAGGGCCTTCA+TGG | 0.387308 | tig0024517:+36952 | Msa1417780:three_prime_UTR |
| GATCTTGTTAATCTGCTTGC+GGG | 0.398913 | tig0024517:-36049 | Msa1417780:intergenic |
| TGTGTTTCTTGATCAAATAA+AGG | 0.399311 | tig0024517:-31347 | Msa1417780:intergenic |
| TTAGGTCTGACGAGTCTTCA+TGG | 0.405485 | tig0024517:+34353 | Msa1417780:intron |
| GATCTCTTGGTACAGATTGC+TGG | 0.405559 | tig0024517:+34388 | Msa1417780:CDS |
| GCATTGAGTGTTCAGCATCT+AGG | 0.406021 | tig0024517:+31156 | Msa1417780:CDS |
| TTAGTCTGCTCTTTGGCTAA+AGG | 0.407783 | tig0024517:+36784 | Msa1417780:three_prime_UTR |
| GCAATATTGAATTCTTTCAT+TGG | 0.414222 | tig0024517:+33333 | Msa1417780:CDS |
| TCCCCTAACTTCACACTGAT+TGG | 0.415952 | tig0024517:-35946 | Msa1417780:intergenic |
| TACCAATCAGTGTGAAGTTA+GGG | 0.416681 | tig0024517:+35944 | Msa1417780:CDS |
| TTGCAACCGACCACTATAAC+TGG | 0.418708 | tig0024517:-31047 | Msa1417780:intergenic |
| TTTGAAGCGCACTCCTGATC+AGG | 0.425956 | tig0024517:+31897 | Msa1417780:CDS |
| CTCATATAGATTTCCGATCC+AGG | 0.429933 | tig0024517:-32515 | Msa1417780:intergenic |
| GGTACGAGCGTGTGGGTTAA+CGG | 0.433056 | tig0024517:-29130 | Msa1417780:intergenic |
| CCATCATCGATACTTCTTCT+CGG | 0.435787 | tig0024517:+29303 | Msa1417780:CDS |
| AGTTGCAGCTAAGGATGATC+TGG | 0.438808 | tig0024517:+34450 | Msa1417780:CDS |
| GAACGGCAGTGGCGGTTGTT+GGG | 0.440689 | tig0024517:+36665 | Msa1417780:CDS |
| GCTGGTCATGGAGAAAATAC+TGG | 0.440820 | tig0024517:+34406 | Msa1417780:CDS |
| GCTGTTGAAAGAAATGCATT+TGG | 0.442039 | tig0024517:+32541 | Msa1417780:CDS |
| TGAATGTTGTTGATATATCT+AGG | 0.442883 | tig0024517:+33495 | Msa1417780:CDS |
| GTCACACGGACAGCAGATAA+TGG | 0.445144 | tig0024517:-33219 | Msa1417780:intergenic |
| AGACTTGCAACTTCACCTTC+TGG | 0.457494 | tig0024517:-33732 | Msa1417780:intergenic |
| ATATCAACGGTCACCTATCA+TGG | 0.457862 | tig0024517:-33803 | Msa1417780:intergenic |
| GAACGAGGACTTACTTTGAC+GGG | 0.459244 | tig0024517:+31757 | Msa1417780:CDS |
| TGGACTGTGCTCAGAAAGTT+CGG | 0.460888 | tig0024517:+31832 | Msa1417780:CDS |
| AAACAATTCTTCAAGTTCAC+GGG | 0.465593 | tig0024517:-32279 | Msa1417780:intergenic |
| TGATCAAATAAAGGAGCTGT+TGG | 0.469295 | tig0024517:-31338 | Msa1417780:intergenic |
| GAAGTATCGATGATGGTGAT+AGG | 0.472412 | tig0024517:-29296 | Msa1417780:intergenic |
| TATTGAATTCTTTCATTGGA+AGG | 0.472632 | tig0024517:+33337 | Msa1417780:CDS |
| TTTACACCCACAATTTCTGC+TGG | 0.474302 | tig0024517:-31697 | Msa1417780:intergenic |
| CTTAGCTGCAACTATAAGAC+AGG | 0.483488 | tig0024517:-34440 | Msa1417780:intergenic |
| GCTCAGCAGCAGTTACAATT+CGG | 0.484471 | tig0024517:-35987 | Msa1417780:intergenic |
| GCTGCAAGGAAGAGTGCATC+TGG | 0.485620 | tig0024517:+36709 | Msa1417780:CDS |
| TCAGGAGTGCGCTTCAAAGT+TGG | 0.487194 | tig0024517:-31892 | Msa1417780:intergenic |
| AACTTCACACTGATTGGTAT+AGG | 0.487429 | tig0024517:-35940 | Msa1417780:intergenic |
| GAGGGTATCATATGATCTCT+TGG | 0.490199 | tig0024517:+34375 | Msa1417780:CDS |
| GCGTGTGGGTTAACGGTGTT+AGG | 0.492132 | tig0024517:-29123 | Msa1417780:intergenic |
| TGGCTATACAAGAGTCAACT+AGG | 0.492631 | tig0024517:+34485 | Msa1417780:CDS |
| TCTTGTATAGCCAATGCAAA+TGG | 0.492757 | tig0024517:-34475 | Msa1417780:intergenic |
| AGCATTCCAGAAACTGAAGC+TGG | 0.495802 | tig0024517:+36021 | Msa1417780:CDS |
| AAAACAATTCTTCAAGTTCA+CGG | 0.499099 | tig0024517:-32280 | Msa1417780:intergenic |
| ACCTCTAAGTTGCGGAGGTG+AGG | 0.499578 | tig0024517:-30740 | Msa1417780:intergenic |
| AGATTCTCCACACTGAAGGC+CGG | 0.501163 | tig0024517:-33171 | Msa1417780:intergenic |
| TATAGTGGTCGGTTGCAAGC+TGG | 0.505286 | tig0024517:+31052 | Msa1417780:CDS |
| CTGTCTTATAGTTGCAGCTA+AGG | 0.507445 | tig0024517:+34441 | Msa1417780:CDS |
| CCTCTAAGTTGCGGAGGTGA+GGG | 0.508445 | tig0024517:-30739 | Msa1417780:intergenic |
| TTGGTACAGATTGCTGGTCA+TGG | 0.509199 | tig0024517:+34394 | Msa1417780:CDS |
| GCATAACGATCCTCGTTGGT+TGG | 0.510674 | tig0024517:-33470 | Msa1417780:intergenic |
| AAATGTTGTTGATATTTCTA+GGG | 0.510920 | tig0024517:+33520 | Msa1417780:CDS |
| GTTTCTGGAATGCTTAAATG+AGG | 0.512018 | tig0024517:-36012 | Msa1417780:intergenic |
| TCAGCAGGTGAGCCTAGAAC+AGG | 0.512798 | tig0024517:+31091 | Msa1417780:CDS |
| GTGCATAGTAGAAAACTTCA+GGG | 0.515784 | tig0024517:-31298 | Msa1417780:intergenic |
| AGAAATTGTGGGTGTAAAGA+AGG | 0.519772 | tig0024517:+31702 | Msa1417780:CDS |
| GTGGAGAATCTAATATACAT+AGG | 0.520845 | tig0024517:+33183 | Msa1417780:CDS |
| TTCAGCATCTAGGCTTATCC+AGG | 0.522194 | tig0024517:+31166 | Msa1417780:CDS |
| CTAATATACATAGGGTTCCC+TGG | 0.523491 | tig0024517:+33192 | Msa1417780:CDS |
| GATTCTCCACACTGAAGGCC+GGG | 0.523700 | tig0024517:-33170 | Msa1417780:intergenic |
| ATGGTGATAGGAACACGATC+AGG | 0.525859 | tig0024517:-29284 | Msa1417780:intergenic |
| TTAAATTGCAGTCCCTGGAT+CGG | 0.528106 | tig0024517:+32502 | Msa1417780:intron |
| GCAGTGGCGGTTGTTGGGAT+CGG | 0.530555 | tig0024517:+36670 | Msa1417780:CDS |
| TATTGCAGTTGGAACGGCAG+TGG | 0.531844 | tig0024517:+36654 | Msa1417780:intron |
| TGATCTGGATCCATTTGCAT+TGG | 0.534252 | tig0024517:+34465 | Msa1417780:CDS |
| TCTAAAGCCTCGATGTGTGC+GGG | 0.535241 | tig0024517:+31373 | Msa1417780:CDS |
| TCTGCAACCAGCAGAAATTG+TGG | 0.536632 | tig0024517:+31690 | Msa1417780:CDS |
| CGAACGAGGACTTACTTTGA+CGG | 0.540399 | tig0024517:+31756 | Msa1417780:CDS |
| TAGTCAGGACATGGGAGTAG+AGG | 0.542994 | tig0024517:+35915 | Msa1417780:CDS |
| TATCTGCTGTCCGTGTGACT+AGG | 0.544245 | tig0024517:+33223 | Msa1417780:CDS |
| ATTGCAAACTCTATTGCAGA+TGG | 0.545203 | tig0024517:-36832 | Msa1417780:intergenic |
| AGATCTTGTTAATCTGCTTG+CGG | 0.547096 | tig0024517:-36050 | Msa1417780:intergenic |
| AATCTACCTTTCCGGGGCAG+TGG | 0.547915 | tig0024517:-32303 | Msa1417780:intergenic |
| TGCAAGTCTGGTGGCCGACA+AGG | 0.549035 | tig0024517:+33746 | Msa1417780:CDS |
| CTGCAACCAGCAGAAATTGT+GGG | 0.549445 | tig0024517:+31691 | Msa1417780:CDS |
| CTGGATCGGAAATCTATATG+AGG | 0.550319 | tig0024517:+32516 | Msa1417780:CDS |
| AGTTGCTGAAGAACTACAGC+GGG | 0.551247 | tig0024517:+30646 | Msa1417780:CDS |
| GTTGAAAGAAATGCATTTGG+AGG | 0.551896 | tig0024517:+32544 | Msa1417780:CDS |
| CCGAGAAGAAGTATCGATGA+TGG | 0.552250 | tig0024517:-29303 | Msa1417780:intergenic |
| AATGAAAGAATTCAATATTG+CGG | 0.552562 | tig0024517:-33331 | Msa1417780:intergenic |
| GCATTATATTGCAGTTGGAA+CGG | 0.557149 | tig0024517:+36648 | Msa1417780:intron |
| ACAATTTCTGCTGGTTGCAG+AGG | 0.560104 | tig0024517:-31688 | Msa1417780:intergenic |
| TGGAGAATCTAATATACATA+GGG | 0.562219 | tig0024517:+33184 | Msa1417780:CDS |
| TGCAGTTGGAACGGCAGTGG+CGG | 0.562789 | tig0024517:+36657 | Msa1417780:intron |
| TTTGTAGGTTAGTCAGGACA+TGG | 0.562907 | tig0024517:+35906 | Msa1417780:intron |
| ACAGCAGATAATGGTTCACC+AGG | 0.564443 | tig0024517:-33210 | Msa1417780:intergenic |
| GGAGTTCGTATCGTCGTCGC+AGG | 0.572629 | tig0024517:+29153 | Msa1417780:CDS |
| TGAGGCCAAAGACTCCTTGT+CGG | 0.573193 | tig0024517:-33760 | Msa1417780:intergenic |
| GGTGAATGTTCCAGTTATAG+TGG | 0.576220 | tig0024517:+31037 | Msa1417780:intron |
| TATTAGATTCTCCACACTGA+AGG | 0.576787 | tig0024517:-33175 | Msa1417780:intergenic |
| CGAACTCCGGTACGAGCGTG+TGG | 0.577179 | tig0024517:-29138 | Msa1417780:intergenic |
| TTTGCGAGATGAAAATCAGC+AGG | 0.578705 | tig0024517:+31076 | Msa1417780:CDS |
| TATATAATATATCACCATGA+AGG | 0.581111 | tig0024517:-36966 | Msa1417780:intergenic |
| GTTAACCCACACGCTCGTAC+CGG | 0.581525 | tig0024517:+29132 | Msa1417780:CDS |
| CTCTAAAGCCTCGATGTGTG+CGG | 0.582022 | tig0024517:+31372 | Msa1417780:CDS |
| TTTATTCTCTGCGACTCAGA+CGG | 0.583863 | tig0024517:+31410 | Msa1417780:CDS |
| TCATATAGATTTCCGATCCA+GGG | 0.585821 | tig0024517:-32514 | Msa1417780:intergenic |
| CACAGCATAACGATCCTCGT+TGG | 0.586419 | tig0024517:-33474 | Msa1417780:intergenic |
| AAGGGCGTCTTGAGACTACA+TGG | 0.586969 | tig0024517:+31812 | Msa1417780:CDS |
| AATGTTCCAGTTATAGTGGT+CGG | 0.588860 | tig0024517:+31041 | Msa1417780:CDS |
| CTCTGCGACTCAGACGGAGA+TGG | 0.593421 | tig0024517:+31416 | Msa1417780:CDS |
| GATGTGTGCGGGCTTTGAAG+CGG | 0.597496 | tig0024517:+31384 | Msa1417780:CDS |
| GTCTGACGAGTCTTCATGGA+GGG | 0.609739 | tig0024517:+34357 | Msa1417780:CDS |
| TGCGACGACGATACGAACTC+CGG | 0.614900 | tig0024517:-29151 | Msa1417780:intergenic |
| TGGAGAAAATACTGGCTATG+AGG | 0.616701 | tig0024517:+34414 | Msa1417780:CDS |
| GGCTATACAAGAGTCAACTA+GGG | 0.620017 | tig0024517:+34486 | Msa1417780:CDS |
| AGATCATAACCTCTAAGTTG+CGG | 0.621424 | tig0024517:-30748 | Msa1417780:intergenic |
| TTGTAGGTTAGTCAGGACAT+GGG | 0.627839 | tig0024517:+35907 | Msa1417780:intron |
| CAATGCAAGTTTCAATCTCG+CGG | 0.629625 | tig0024517:-31139 | Msa1417780:intergenic |
| GAATGTTGTTGATATATCTA+GGG | 0.630141 | tig0024517:+33496 | Msa1417780:CDS |
| GTGCAAGATAAATTGTCTGA+AGG | 0.633010 | tig0024517:+31727 | Msa1417780:CDS |
| AGGTGAAGTTGCAAGTCTGG+TGG | 0.637915 | tig0024517:+33737 | Msa1417780:CDS |
| GTCTATCACATGCATAAGTG+AGG | 0.647194 | tig0024517:-30682 | Msa1417780:intergenic |
| CGCGTCGCTTCCTAGTCACA+CGG | 0.647450 | tig0024517:-33233 | Msa1417780:intergenic |
| TTCAAAGCCCGCACACATCG+AGG | 0.648111 | tig0024517:-31380 | Msa1417780:intergenic |
| CTTACAGGATATATGCTGCA+AGG | 0.651354 | tig0024517:+36695 | Msa1417780:CDS |
| TCTAAACCCGGCCTTCAGTG+TGG | 0.651361 | tig0024517:+33164 | Msa1417780:CDS |
| ACCAATCAGTGTGAAGTTAG+GGG | 0.655652 | tig0024517:+35945 | Msa1417780:CDS |
| TCATAACCTCTAAGTTGCGG+AGG | 0.656386 | tig0024517:-30745 | Msa1417780:intergenic |
| AACAATTCTTCAAGTTCACG+GGG | 0.662807 | tig0024517:-32278 | Msa1417780:intergenic |
| GAAAGCAATCTACCTTTCCG+GGG | 0.665164 | tig0024517:-32309 | Msa1417780:intergenic |
| CAGCAGCAGTTACAATTCGG+CGG | 0.665217 | tig0024517:-35984 | Msa1417780:intergenic |
| ACTCATGACACTTCTAAACC+CGG | 0.676807 | tig0024517:+33152 | Msa1417780:CDS |
| GAACTCCGGTACGAGCGTGT+GGG | 0.684411 | tig0024517:-29137 | Msa1417780:intergenic |
| GTGTTGAAAGAGATTCCAGA+AGG | 0.690451 | tig0024517:+33717 | Msa1417780:CDS |
| TCTGCATCATCAATGGCGAG+AGG | 0.695615 | tig0024517:+29096 | None:intergenic |
| TCTGAAGGTGTTAACGAACG+AGG | 0.697614 | tig0024517:+31742 | Msa1417780:CDS |
| TTAGCTGCAACTATAAGACA+GGG | 0.712396 | tig0024517:-34439 | Msa1417780:intergenic |
| CAGCAGATAATGGTTCACCA+GGG | 0.731463 | tig0024517:-33209 | Msa1417780:intergenic |
| AGCTTATAATCCAACCAACG+AGG | 0.743058 | tig0024517:+33460 | Msa1417780:CDS |
| GAGTTGCTGAAGAACTACAG+CGG | 0.746847 | tig0024517:+30645 | Msa1417780:CDS |
| GGTCTGACGAGTCTTCATGG+AGG | 0.756034 | tig0024517:+34356 | Msa1417780:intron |
| ACATGCATAAGTGAGGACAA+CGG | 0.771471 | tig0024517:-30675 | Msa1417770:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATCTTAAAATATCAA+TGG | - | tig0024517:32925-32944 | Msa1417780:intergenic | 10.0% |
| !! | ATAATTAAATCTATATTATC+AGG | - | tig0024517:33389-33408 | Msa1417780:intergenic | 10.0% |
| !! | ATAATATAGATTTAATTATC+CGG | + | tig0024517:33390-33409 | Msa1417780:intron | 10.0% |
| !!! | TTTTTTTTTTTATTTCTTGT+TGG | + | tig0024517:36434-36453 | Msa1417780:intron | 10.0% |
| !!! | TTTTTTTTTTATTTCTTGTT+GGG | + | tig0024517:36435-36454 | Msa1417780:intron | 10.0% |
| !! | TTGATAAAAAATTAAACTTA+AGG | - | tig0024517:36878-36897 | Msa1417780:intergenic | 10.0% |
| !!! | TTAAGTTTAATTTTTTATCA+AGG | + | tig0024517:36877-36896 | Msa1417780:three_prime_UTR | 10.0% |
| !!! | TTGAAAATTTAAGTACATTT+TGG | + | tig0024517:30714-30733 | Msa1417780:CDS | 15.0% |
| !! | CTATTCTATTTATTCATTTA+GGG | - | tig0024517:30844-30863 | Msa1417780:intergenic | 15.0% |
| !! | TCTATTCTATTTATTCATTT+AGG | - | tig0024517:30845-30864 | Msa1417780:intergenic | 15.0% |
| !! | AAGAAAAGTAAAATTATTCA+GGG | - | tig0024517:32155-32174 | Msa1417780:intergenic | 15.0% |
| !! | ATATATCTTAAAAAAGTCAA+TGG | - | tig0024517:32800-32819 | Msa1417780:intergenic | 15.0% |
| !! | ACCAAAATATTTAATATCAA+CGG | - | tig0024517:33819-33838 | Msa1417780:intergenic | 15.0% |
| !! | TAACTTATAAGCAAATTTAT+AGG | - | tig0024517:34233-34252 | Msa1417780:intergenic | 15.0% |
| !!! | GCTGATTAAAAATTTATTTT+AGG | + | tig0024517:34335-34354 | Msa1417780:intron | 15.0% |
| !!! | TTTTTTAAACAACTTATCTT+CGG | + | tig0024517:35869-35888 | Msa1417780:intron | 15.0% |
| !! | AAAATTTAAGTAGGTTAAAT+AGG | - | tig0024517:36203-36222 | Msa1417780:intergenic | 15.0% |
| !!! | TATTTAACCTACTTAAATTT+TGG | + | tig0024517:36202-36221 | Msa1417780:intron | 15.0% |
| !!! | ATTTAACCTACTTAAATTTT+GGG | + | tig0024517:36203-36222 | Msa1417780:intron | 15.0% |
| !! | ATAAAAAATTAAACTTAAGG+TGG | - | tig0024517:36875-36894 | Msa1417780:intergenic | 15.0% |
| !!! | AAGTTTTATACACAAATTAT+TGG | + | tig0024517:36917-36936 | Msa1417780:three_prime_UTR | 15.0% |
| !! | AAAGAATTAAAACTGAGAAT+TGG | + | tig0024517:29450-29469 | Msa1417780:intron | 20.0% |
| !! | TAAAAAGTAAAAACAGTCTA+TGG | - | tig0024517:29707-29726 | Msa1417780:intergenic | 20.0% |
| !! | CAAATTATGTTACAGATTTA+GGG | - | tig0024517:30338-30357 | Msa1417780:intergenic | 20.0% |
| !!! | CTTTTATGTATTCTCTTATT+AGG | - | tig0024517:30470-30489 | Msa1417780:intergenic | 20.0% |
| !! | AAATTAATATGCTACAAGAA+TGG | + | tig0024517:30879-30898 | Msa1417780:intron | 20.0% |
| !!! | TAATTGAATTTTCTTTCTGA+AGG | + | tig0024517:31274-31293 | Msa1417780:intron | 20.0% |
| !! | TCATAATACTCAGATAATAA+AGG | - | tig0024517:31579-31598 | Msa1417780:intergenic | 20.0% |
| !!! | TTTTCACAAATCTTATACAA+AGG | - | tig0024517:31629-31648 | Msa1417780:intergenic | 20.0% |
| !! | CAAGAAAAGTAAAATTATTC+AGG | - | tig0024517:32156-32175 | Msa1417780:intergenic | 20.0% |
| !! | ACTCAATTTAAATTGTGTTA+TGG | + | tig0024517:32862-32881 | Msa1417780:intron | 20.0% |
| !!! | AAGAGAAATTATATGTTTTC+TGG | + | tig0024517:33120-33139 | Msa1417780:intron | 20.0% |
| !! | AATGAAAGAATTCAATATTG+CGG | - | tig0024517:33334-33353 | Msa1417780:intergenic | 20.0% |
| !! | TAAATGTTGTTGATATTTCT+AGG | + | tig0024517:33519-33538 | Msa1417780:CDS | 20.0% |
| !!! | AAATGTTGTTGATATTTCTA+GGG | + | tig0024517:33520-33539 | Msa1417780:CDS | 20.0% |
| !!! | ACCGTTGATATTAAATATTT+TGG | + | tig0024517:33815-33834 | Msa1417780:intron | 20.0% |
| !!! | TATTTTCCTAAAATAACGTT+AGG | + | tig0024517:33902-33921 | Msa1417780:intron | 20.0% |
| !! | AAAACATTAATTGTACTTCA+AGG | + | tig0024517:34051-34070 | Msa1417780:intron | 20.0% |
| !! | ATGATCATATACATAATTGT+TGG | + | tig0024517:34535-34554 | Msa1417780:intron | 20.0% |
| !! | AGATAAATAGAGATTTAATG+CGG | + | tig0024517:34564-34583 | Msa1417780:intron | 20.0% |
| !!! | TATTGCATATCAGAAAATTT+TGG | - | tig0024517:34622-34641 | Msa1417780:intergenic | 20.0% |
| !!! | TATGCTATTAACTATGATTT+TGG | + | tig0024517:34834-34853 | Msa1417780:intron | 20.0% |
| !! | TGTAACTTTCCAAATATAAT+AGG | - | tig0024517:35089-35108 | Msa1417780:intergenic | 20.0% |
| !! | AAATTGTCTAATTGTAAAGA+CGG | - | tig0024517:35310-35329 | Msa1417780:intergenic | 20.0% |
| !!! | TGATTTTGTTGATAATTCAT+TGG | - | tig0024517:36480-36499 | Msa1417780:intergenic | 20.0% |
| !! | GTAGCAAATGAATAAATAAA+TGG | + | tig0024517:36504-36523 | Msa1417780:intron | 20.0% |
| !!! | TGACTTAAATTTGAAGTATT+TGG | - | tig0024517:36585-36604 | Msa1417780:intergenic | 20.0% |
| !!! | TTTTTTATCAAGGTTGAATT+AGG | + | tig0024517:36887-36906 | Msa1417780:three_prime_UTR | 20.0% |
| !! | TATATAATATATCACCATGA+AGG | - | tig0024517:36969-36988 | Msa1417780:intergenic | 20.0% |
| ! | TTAATAATTGACGCATGAAT+TGG | + | tig0024517:29389-29408 | Msa1417780:intron | 25.0% |
| ! | GTTATGTTTACAAGCTATAT+TGG | + | tig0024517:29550-29569 | Msa1417780:intron | 25.0% |
| !!! | AATTTTCACAAGCTTTTTTC+TGG | - | tig0024517:29594-29613 | Msa1417780:intergenic | 25.0% |
| !!! | AGTTTTCACAAGCTTTTTTT+CGG | - | tig0024517:29761-29780 | Msa1417780:intergenic | 25.0% |
| !!! | GTTGTTTTTACAAGCTATAT+TGG | + | tig0024517:29872-29891 | Msa1417780:intron | 25.0% |
| ! | GCTTATTTAAGCTTATCTAA+CGG | - | tig0024517:30302-30321 | Msa1417780:intergenic | 25.0% |
| ! | CCAAATTATGTTACAGATTT+AGG | - | tig0024517:30339-30358 | Msa1417780:intergenic | 25.0% |
| ! | CCTAAATCTGTAACATAATT+TGG | + | tig0024517:30336-30355 | Msa1417780:intron | 25.0% |
| ! | AAACAACTCAAAAACCAAAA+TGG | - | tig0024517:30377-30396 | Msa1417780:intergenic | 25.0% |
| ! | AATGGTTAACATTCAGATTA+GGG | - | tig0024517:30564-30583 | Msa1417780:intergenic | 25.0% |
| ! | AAATGGTTAACATTCAGATT+AGG | - | tig0024517:30565-30584 | Msa1417780:intergenic | 25.0% |
| ! | ACAGGAACAATAAAGTAAAA+TGG | - | tig0024517:30582-30601 | Msa1417780:intergenic | 25.0% |
| ! | AGAATAACAATAATAAGCAC+AGG | - | tig0024517:30600-30619 | Msa1417780:intergenic | 25.0% |
| !!! | ACTTAAATTTTCAAGTGTCT+CGG | - | tig0024517:30708-30727 | Msa1417780:intergenic | 25.0% |
| ! | TAAGACACAAAAACAATAAC+AGG | - | tig0024517:30776-30795 | Msa1417780:intergenic | 25.0% |
| ! | TATTTATTCATTTAGGGAAG+GGG | - | tig0024517:30838-30857 | Msa1417780:intergenic | 25.0% |
| ! | CTATTTATTCATTTAGGGAA+GGG | - | tig0024517:30839-30858 | Msa1417780:intergenic | 25.0% |
| ! | TCTATTTATTCATTTAGGGA+AGG | - | tig0024517:30840-30859 | Msa1417780:intergenic | 25.0% |
| ! | ATTGACTGAATTTCATTAAC+AGG | + | tig0024517:31016-31035 | Msa1417780:intron | 25.0% |
| ! | AAATAACATTTCAACAAAGG+AGG | - | tig0024517:31223-31242 | Msa1417780:intergenic | 25.0% |
| !! | CCTTTGTTGAAATGTTATTT+CGG | + | tig0024517:31223-31242 | Msa1417780:intron | 25.0% |
| ! | TGTGTTTCTTGATCAAATAA+AGG | - | tig0024517:31350-31369 | Msa1417780:intergenic | 25.0% |
| !! | TTTTGACATTCAATATGAGA+AGG | - | tig0024517:31488-31507 | Msa1417780:intergenic | 25.0% |
| ! | CATATTGAATGTCAAAATTG+TGG | + | tig0024517:31491-31510 | Msa1417780:intron | 25.0% |
| !!! | TCTTTTTTCTAGTTGAATCT+TGG | + | tig0024517:31933-31952 | Msa1417780:intron | 25.0% |
| !! | TATAAAGAGCATAATTCACA+AGG | - | tig0024517:31959-31978 | Msa1417780:intergenic | 25.0% |
| ! | ATATCTTACTCTATTCTCTT+TGG | + | tig0024517:32023-32042 | Msa1417780:intron | 25.0% |
| ! | AAAATGTCTGAAAATGATTG+GGG | - | tig0024517:32184-32203 | Msa1417780:intergenic | 25.0% |
| ! | GAAAATGTCTGAAAATGATT+GGG | - | tig0024517:32185-32204 | Msa1417780:intergenic | 25.0% |
| ! | AGAAAATGTCTGAAAATGAT+TGG | - | tig0024517:32186-32205 | Msa1417780:intergenic | 25.0% |
| !! | AAAACAATTCTTCAAGTTCA+CGG | - | tig0024517:32283-32302 | Msa1417780:intergenic | 25.0% |
| ! | TATGACATAATTTACATGTG+AGG | + | tig0024517:32446-32465 | Msa1417780:intron | 25.0% |
| ! | ATATCAAATAACATTGCCAA+GGG | - | tig0024517:32473-32492 | Msa1417780:intergenic | 25.0% |
| ! | AATATCAAATAACATTGCCA+AGG | - | tig0024517:32474-32493 | Msa1417780:intergenic | 25.0% |
| ! | TTGAGTGATAAAATTAACCA+TGG | - | tig0024517:32680-32699 | Msa1417780:intergenic | 25.0% |
| !!! | AAGTAGTGTTTTTAGAATCA+AGG | + | tig0024517:32703-32722 | Msa1417780:intron | 25.0% |
| ! | TATATATGTTCGTATAAGAG+TGG | + | tig0024517:32815-32834 | Msa1417780:intron | 25.0% |
| ! | TGGAGAATCTAATATACATA+GGG | + | tig0024517:33184-33203 | Msa1417780:CDS | 25.0% |
| ! | GCAATATTGAATTCTTTCAT+TGG | + | tig0024517:33333-33352 | Msa1417780:CDS | 25.0% |
| ! | TATTGAATTCTTTCATTGGA+AGG | + | tig0024517:33337-33356 | Msa1417780:CDS | 25.0% |
| ! | TGAATGTTGTTGATATATCT+AGG | + | tig0024517:33495-33514 | Msa1417780:CDS | 25.0% |
| ! | GAATGTTGTTGATATATCTA+GGG | + | tig0024517:33496-33515 | Msa1417780:CDS | 25.0% |
| !!! | GATTTTATTGTTTTGTTTGC+AGG | + | tig0024517:33677-33696 | Msa1417780:intron | 25.0% |
| ! | TTCAAATTTATATACACCAC+AGG | - | tig0024517:33843-33862 | Msa1417780:intergenic | 25.0% |
| ! | TAAAAATTCAAAGAAACGAG+TGG | - | tig0024517:33871-33890 | Msa1417780:intergenic | 25.0% |
| !!! | TTGATTTTTCAAACTCATGA+TGG | + | tig0024517:33946-33965 | Msa1417780:intron | 25.0% |
| ! | TGTAAAACTAGTGTGAAATT+AGG | - | tig0024517:34012-34031 | Msa1417780:intergenic | 25.0% |
| ! | CAAGGAAAATAAATTAGTGA+TGG | + | tig0024517:34069-34088 | Msa1417780:intron | 25.0% |
| ! | AATTTAATGTTCATGTGATC+TGG | + | tig0024517:34258-34277 | Msa1417780:intron | 25.0% |
| !!! | TATACAACCAAATTTTTTCC+AGG | - | tig0024517:34308-34327 | Msa1417780:intergenic | 25.0% |
| !!! | TTTCAAGCAGAAGTTTTATT+TGG | + | tig0024517:34874-34893 | Msa1417780:intron | 25.0% |
| ! | GCATTTGATCCTATTATATT+TGG | + | tig0024517:35077-35096 | Msa1417780:intron | 25.0% |
| ! | AATTAAGCATAGATAGAACA+CGG | - | tig0024517:35374-35393 | Msa1417780:intergenic | 25.0% |
| ! | GCATTTGATCCATATATATT+TGG | + | tig0024517:35461-35480 | Msa1417780:intron | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | + | tig0024517:35572-35591 | Msa1417780:intron | 25.0% |
| ! | ATGATTATATATGCTATGGA+AGG | - | tig0024517:35822-35841 | Msa1417780:intergenic | 25.0% |
| ! | TTCCATAGCATATATAATCA+TGG | + | tig0024517:35821-35840 | Msa1417780:intron | 25.0% |
| ! | AAAAGATGAAGTAAAAGTAG+GGG | - | tig0024517:36541-36560 | Msa1417780:intergenic | 25.0% |
| ! | CAAAAGATGAAGTAAAAGTA+GGG | - | tig0024517:36542-36561 | Msa1417780:intergenic | 25.0% |
| ! | TCAAAAGATGAAGTAAAAGT+AGG | - | tig0024517:36543-36562 | Msa1417780:intergenic | 25.0% |
| ! | TCACAAGAAAATATAACTGT+GGG | + | tig0024517:36602-36621 | Msa1417780:intron | 25.0% |
| ! | TTAATGCATTATATTGCAGT+TGG | + | tig0024517:36643-36662 | Msa1417780:intron | 25.0% |
| !! | CTTCATCTTTTTATTAGTCA+GGG | + | tig0024517:36943-36962 | Msa1417780:three_prime_UTR | 25.0% |
| !!! | GTTGTTTTTACTCGCTATAT+CGG | + | tig0024517:30033-30052 | Msa1417780:intron | 30.0% |
| !!! | TGCTACAAGTTGTTTTTACA+AGG | + | tig0024517:30182-30201 | Msa1417780:intron | 30.0% |
| TTAAATAAGCCAATCCAAAC+AGG | + | tig0024517:30312-30331 | Msa1417780:intron | 30.0% | |
| ! | TTTTATCTATGTTATCGCCA+AGG | + | tig0024517:30529-30548 | Msa1417780:intron | 30.0% |
| ! | TTATTCTTTTTGCAGTGTTG+CGG | + | tig0024517:30613-30632 | Msa1417780:intron | 30.0% |
| !!! | CTTAAATTTTCAAGTGTCTC+GGG | - | tig0024517:30707-30726 | Msa1417780:intergenic | 30.0% |
| ATTTATTCATTTAGGGAAGG+GGG | - | tig0024517:30837-30856 | Msa1417780:intergenic | 30.0% | |
| TAATATGCTACAAGAATGGA+AGG | + | tig0024517:30883-30902 | Msa1417780:intron | 30.0% | |
| AATATGCTACAAGAATGGAA+GGG | + | tig0024517:30884-30903 | Msa1417780:intron | 30.0% | |
| ACATAAAAGATGAGTGTAAC+TGG | - | tig0024517:30944-30963 | Msa1417780:intergenic | 30.0% | |
| TAGTATGAATGAAAGATACC+TGG | - | tig0024517:31187-31206 | Msa1417780:intergenic | 30.0% | |
| CCGAAATAACATTTCAACAA+AGG | - | tig0024517:31226-31245 | Msa1417780:intergenic | 30.0% | |
| ! | AGTTTTCTACTATGCACAAA+AGG | + | tig0024517:31304-31323 | Msa1417780:CDS | 30.0% |
| ACGTGTCATGTTATAATACT+TGG | - | tig0024517:31529-31548 | Msa1417780:intergenic | 30.0% | |
| AGGTTAACCTACGATAATAA+AGG | - | tig0024517:31609-31628 | Msa1417780:intergenic | 30.0% | |
| AATCTAACCAAACTATCTAC+AGG | + | tig0024517:31648-31667 | Msa1417780:intron | 30.0% | |
| ! | ATGCCCTTTTCATAGAAAAA+GGG | + | tig0024517:31794-31813 | Msa1417780:CDS | 30.0% |
| GAATAAAAAAACACCTGATC+AGG | - | tig0024517:31913-31932 | Msa1417780:intergenic | 30.0% | |
| CAACAAATTGAACACAAAAC+AGG | - | tig0024517:31989-32008 | Msa1417780:intergenic | 30.0% | |
| !! | TGTTCAATTTGTTGACAACT+TGG | + | tig0024517:31995-32014 | Msa1417780:intron | 30.0% |
| ! | TGAATCATTTGATGCTGATT+TGG | + | tig0024517:32108-32127 | Msa1417780:CDS | 30.0% |
| ! | ATATTTTCCTTCATCTAGGA+TGG | + | tig0024517:32245-32264 | Msa1417780:intron | 30.0% |
| !! | TATTTTCCTTCATCTAGGAT+GGG | + | tig0024517:32246-32265 | Msa1417780:intron | 30.0% |
| ! | AAACAATTCTTCAAGTTCAC+GGG | - | tig0024517:32282-32301 | Msa1417780:intergenic | 30.0% |
| GCTTTCCTAATATTATGACA+CGG | + | tig0024517:32326-32345 | Msa1417780:intron | 30.0% | |
| AGATTCCGTGTCATAATATT+AGG | - | tig0024517:32334-32353 | Msa1417780:intergenic | 30.0% | |
| CATGTAAATTATGTCATAGC+TGG | - | tig0024517:32444-32463 | Msa1417780:intergenic | 30.0% | |
| CATTGTTCAACAAAAATGCA+AGG | - | tig0024517:32635-32654 | Msa1417780:intergenic | 30.0% | |
| ACAAACATCATGTAAATCTG+AGG | - | tig0024517:32732-32751 | Msa1417780:intergenic | 30.0% | |
| AGATTTACATGATGTTTGTC+TGG | + | tig0024517:32733-32752 | Msa1417780:intron | 30.0% | |
| TGCAAATAAATGCGAAACTT+AGG | - | tig0024517:32899-32918 | Msa1417780:intergenic | 30.0% | |
| ATGATGTATGACTGTATGTA+TGG | + | tig0024517:33042-33061 | Msa1417780:intron | 30.0% | |
| ! | ATTATATGTTTTCTGGACAG+TGG | + | tig0024517:33127-33146 | Msa1417780:intron | 30.0% |
| ! | TTATATGTTTTCTGGACAGT+GGG | + | tig0024517:33128-33147 | Msa1417780:intron | 30.0% |
| GTGGAGAATCTAATATACAT+AGG | + | tig0024517:33183-33202 | Msa1417780:CDS | 30.0% | |
| ! | ATTCAATATTGCGGATTTTC+CGG | - | tig0024517:33325-33344 | Msa1417780:intergenic | 30.0% |
| TATATTATCAGGAGTCTTCT+AGG | - | tig0024517:33378-33397 | Msa1417780:intergenic | 30.0% | |
| GGATTATAAGCTTCAGAATA+TGG | - | tig0024517:33452-33471 | Msa1417780:intergenic | 30.0% | |
| TAATAACTTCTTACTGTGAC+AGG | + | tig0024517:33570-33589 | Msa1417780:intron | 30.0% | |
| GACAAAAAAAATGAAGACTC+TGG | - | tig0024517:33628-33647 | Msa1417780:intergenic | 30.0% | |
| !!! | ATTAAATATTTTGGTGCCTG+TGG | + | tig0024517:33824-33843 | Msa1417780:intron | 30.0% |
| !! | ATTCAGCCTAACGTTATTTT+AGG | - | tig0024517:33911-33930 | Msa1417780:intergenic | 30.0% |
| ! | TTTTTGCTTATAAACGAGAC+TGG | - | tig0024517:33984-34003 | Msa1417780:intergenic | 30.0% |
| AGTGAAGATGTTATTCAACA+TGG | + | tig0024517:34155-34174 | Msa1417780:intron | 30.0% | |
| GTGAAGATGTTATTCAACAT+GGG | + | tig0024517:34156-34175 | Msa1417780:intron | 30.0% | |
| TACTTAGTATGAGTTGCTTA+TGG | - | tig0024517:34285-34304 | Msa1417780:intergenic | 30.0% | |
| CTAAGTACCTGGAAAAAATT+TGG | + | tig0024517:34298-34317 | Msa1417780:intron | 30.0% | |
| ATAAAACTGCCATTCAAAGA+TGG | - | tig0024517:34817-34836 | Msa1417780:intergenic | 30.0% | |
| ATAAAACTTCTGCTTGAAAC+AGG | - | tig0024517:34873-34892 | Msa1417780:intergenic | 30.0% | |
| TGGAAACTGTCTAATTGTAA+AGG | - | tig0024517:34937-34956 | Msa1417780:intergenic | 30.0% | |
| !! | TGAAAGTGTTGTAATAAGAG+TGG | - | tig0024517:34957-34976 | Msa1417780:intergenic | 30.0% |
| ACTTTCATGTGCATTAGTAT+AGG | + | tig0024517:34970-34989 | Msa1417780:intron | 30.0% | |
| CAACGACATAAAACAATATC+AGG | - | tig0024517:35054-35073 | Msa1417780:intergenic | 30.0% | |
| ! | AATACTGTCTTTTCCATCTA+TGG | + | tig0024517:35152-35171 | Msa1417780:intron | 30.0% |
| ! | ATACTGTCTTTTCCATCTAT+GGG | + | tig0024517:35153-35172 | Msa1417780:intron | 30.0% |
| GAGTGTTAGAATAGATTGTT+AGG | + | tig0024517:35213-35232 | Msa1417780:intron | 30.0% | |
| TTCCTTGGCATATATAATCA+CGG | + | tig0024517:35258-35277 | Msa1417780:intron | 30.0% | |
| CAGTAGCTTCCAAATATATA+TGG | - | tig0024517:35473-35492 | Msa1417780:intergenic | 30.0% | |
| TCTCAAATTATTAGCGATGT+CGG | - | tig0024517:35541-35560 | Msa1417780:intergenic | 30.0% | |
| !!! | ACTGTTAGCTTTTCCATTTA+TGG | + | tig0024517:35691-35710 | Msa1417780:intron | 30.0% |
| !!! | CTGTTAGCTTTTCCATTTAT+GGG | + | tig0024517:35692-35711 | Msa1417780:intron | 30.0% |
| TTGTAGATGATACCCATAAA+TGG | - | tig0024517:35707-35726 | Msa1417780:intergenic | 30.0% | |
| ATTTATGGGTATCATCTACA+AGG | + | tig0024517:35706-35725 | Msa1417780:intron | 30.0% | |
| ! | AATGATGTACTGATAAGCAT+AGG | + | tig0024517:35729-35748 | Msa1417780:intron | 30.0% |
| ! | ATGATGTACTGATAAGCATA+GGG | + | tig0024517:35730-35749 | Msa1417780:intron | 30.0% |
| TGCCATGATTATATATGCTA+TGG | - | tig0024517:35826-35845 | Msa1417780:intergenic | 30.0% | |
| ATGTCACCCAAAATTTAAGT+AGG | - | tig0024517:36212-36231 | Msa1417780:intergenic | 30.0% | |
| !! | TACTTAAATTTTGGGTGACA+TGG | + | tig0024517:36211-36230 | Msa1417780:intron | 30.0% |
| ! | ATCTGTCATTTATAACCTTG+AGG | + | tig0024517:36292-36311 | Msa1417780:intron | 30.0% |
| ! | TGTTTCTATTGTGTTGATGA+TGG | + | tig0024517:36353-36372 | Msa1417780:intron | 30.0% |
| !!! | TCTTTTGACTAGTTTTGTTC+TGG | + | tig0024517:36555-36574 | Msa1417780:intron | 30.0% |
| GTCACAAGAAAATATAACTG+TGG | + | tig0024517:36601-36620 | Msa1417780:intron | 30.0% | |
| ! | GCTAAAGGCTTTAACATTAA+AGG | + | tig0024517:36799-36818 | Msa1417780:three_prime_UTR | 30.0% |
| ! | GCTTCATCTTTTTATTAGTC+AGG | + | tig0024517:36942-36961 | Msa1417780:three_prime_UTR | 30.0% |
| ! | CGTGATTAAGTTGCTAATGA+AGG | - | tig0024517:29358-29377 | Msa1417780:intergenic | 35.0% |
| ! | TAAGTTTTGCGTGACTGTTT+CGG | - | tig0024517:30277-30296 | Msa1417780:intergenic | 35.0% |
| !! | GTTGATGTTTGAGACCATTT+TGG | + | tig0024517:30360-30379 | Msa1417780:intron | 35.0% |
| AGATCATAACCTCTAAGTTG+CGG | - | tig0024517:30751-30770 | Msa1417780:intergenic | 35.0% | |
| TTTATTCATTTAGGGAAGGG+GGG | - | tig0024517:30836-30855 | Msa1417780:intergenic | 35.0% | |
| ATATGCTACAAGAATGGAAG+GGG | + | tig0024517:30885-30904 | Msa1417780:intron | 35.0% | |
| GGGGAAAACTTGATATAGAT+AGG | + | tig0024517:30904-30923 | Msa1417780:intron | 35.0% | |
| AATGTTCCAGTTATAGTGGT+CGG | + | tig0024517:31041-31060 | Msa1417780:CDS | 35.0% | |
| GTGCATAGTAGAAAACTTCA+GGG | - | tig0024517:31301-31320 | Msa1417780:intergenic | 35.0% | |
| TGTGCATAGTAGAAAACTTC+AGG | - | tig0024517:31302-31321 | Msa1417780:intergenic | 35.0% | |
| TGATCAAATAAAGGAGCTGT+TGG | - | tig0024517:31341-31360 | Msa1417780:intergenic | 35.0% | |
| CATGACACCTTTATTATCGT+AGG | + | tig0024517:31599-31618 | Msa1417780:intron | 35.0% | |
| CATCTAACCTGTAGATAGTT+TGG | - | tig0024517:31658-31677 | Msa1417780:intergenic | 35.0% | |
| AGAAATTGTGGGTGTAAAGA+AGG | + | tig0024517:31702-31721 | Msa1417780:CDS | 35.0% | |
| GTGCAAGATAAATTGTCTGA+AGG | + | tig0024517:31727-31746 | Msa1417780:CDS | 35.0% | |
| ! | CATGCCCTTTTCATAGAAAA+AGG | + | tig0024517:31793-31812 | Msa1417780:CDS | 35.0% |
| ! | ACGCCCTTTTTCTATGAAAA+GGG | - | tig0024517:31800-31819 | Msa1417780:intergenic | 35.0% |
| CCTAGATGAAGGAAAATATG+TGG | - | tig0024517:32244-32263 | Msa1417780:intergenic | 35.0% | |
| ! | CCACATATTTTCCTTCATCT+AGG | + | tig0024517:32241-32260 | Msa1417780:intron | 35.0% |
| ! | AACAATTCTTCAAGTTCACG+GGG | - | tig0024517:32281-32300 | Msa1417780:intergenic | 35.0% |
| ! | TTTTCAAATGTACACACGAC+AGG | + | tig0024517:32367-32386 | Msa1417780:intron | 35.0% |
| TTTCAAATGTACACACGACA+GGG | + | tig0024517:32368-32387 | Msa1417780:intron | 35.0% | |
| ! | CAATTTTAAATTGCAGTCCC+TGG | + | tig0024517:32497-32516 | Msa1417780:intron | 35.0% |
| TCATATAGATTTCCGATCCA+GGG | - | tig0024517:32517-32536 | Msa1417780:intergenic | 35.0% | |
| GCTGTTGAAAGAAATGCATT+TGG | + | tig0024517:32541-32560 | Msa1417780:CDS | 35.0% | |
| GTTGAAAGAAATGCATTTGG+AGG | + | tig0024517:32544-32563 | Msa1417780:CDS | 35.0% | |
| CAACAAAAATGCAAGGAAGA+GGG | - | tig0024517:32628-32647 | Msa1417780:intergenic | 35.0% | |
| TCAACAAAAATGCAAGGAAG+AGG | - | tig0024517:32629-32648 | Msa1417780:intergenic | 35.0% | |
| GAACAATGTTCATAGAAGAG+TGG | + | tig0024517:32647-32666 | Msa1417780:intron | 35.0% | |
| AATGTTCATAGAAGAGTGGT+GGG | + | tig0024517:32651-32670 | Msa1417780:intron | 35.0% | |
| ATATGTTCGTATAAGAGTGG+TGG | + | tig0024517:32818-32837 | Msa1417780:intron | 35.0% | |
| TATGTTCGTATAAGAGTGGT+GGG | + | tig0024517:32819-32838 | Msa1417780:intron | 35.0% | |
| TATTAGATTCTCCACACTGA+AGG | - | tig0024517:33178-33197 | Msa1417780:intergenic | 35.0% | |
| !! | TATTGCAGTGCTTCGTTTTT+GGG | + | tig0024517:33289-33308 | Msa1417780:CDS | 35.0% |
| GGGTACAATAATTACTTGAC+TGG | + | tig0024517:33540-33559 | Msa1417780:intron | 35.0% | |
| AAAAAATGAAGACTCTGGTG+CGG | - | tig0024517:33623-33642 | Msa1417780:intergenic | 35.0% | |
| AAAAACTGCAATGTCACATG+AGG | - | tig0024517:33781-33800 | Msa1417780:intergenic | 35.0% | |
| ! | TTGCAGTTTTTGTCCATGAT+AGG | + | tig0024517:33790-33809 | Msa1417780:CDS | 35.0% |
| TAGGCTGAATACCACAATTT+CGG | + | tig0024517:33921-33940 | Msa1417780:intron | 35.0% | |
| AAAAATCAACCCCGAAATTG+TGG | - | tig0024517:33935-33954 | Msa1417780:intergenic | 35.0% | |
| AAGATGTTATTCAACATGGG+TGG | + | tig0024517:34159-34178 | Msa1417780:intron | 35.0% | |
| TTAGCTGCAACTATAAGACA+GGG | - | tig0024517:34442-34461 | Msa1417780:intergenic | 35.0% | |
| TCTTGTATAGCCAATGCAAA+TGG | - | tig0024517:34478-34497 | Msa1417780:intergenic | 35.0% | |
| !! | ATTTGGCTCTACAAATCATC+TGG | + | tig0024517:34891-34910 | Msa1417780:intron | 35.0% |
| !! | TTTGGCTCTACAAATCATCT+GGG | + | tig0024517:34892-34911 | Msa1417780:intron | 35.0% |
| TTGTAGATGATACCCATAGA+TGG | - | tig0024517:35168-35187 | Msa1417780:intergenic | 35.0% | |
| TTGTATTCTCATGTCTTCCT+TGG | + | tig0024517:35243-35262 | Msa1417780:intron | 35.0% | |
| CTTTCATGCGCATTTAGTAT+AGG | + | tig0024517:35347-35366 | Msa1417780:intron | 35.0% | |
| CAGATTTGTAGCTAAAAACC+TGG | + | tig0024517:35407-35426 | Msa1417780:intron | 35.0% | |
| !! | GTAATTATAAGTGTCGGTGT+CGG | + | tig0024517:35578-35597 | Msa1417780:intron | 35.0% |
| TGGCATATGTGATTTCTTGA+TGG | + | tig0024517:35841-35860 | Msa1417780:intron | 35.0% | |
| AAACAACTTATCTTCGGACA+TGG | + | tig0024517:35875-35894 | Msa1417780:intron | 35.0% | |
| !! | ATGTGTTTTGTAGGTTAGTC+AGG | + | tig0024517:35900-35919 | Msa1417780:intron | 35.0% |
| ! | AACTTCACACTGATTGGTAT+AGG | - | tig0024517:35943-35962 | Msa1417780:intergenic | 35.0% |
| ATACCAATCAGTGTGAAGTT+AGG | + | tig0024517:35943-35962 | Msa1417780:CDS | 35.0% | |
| TACCAATCAGTGTGAAGTTA+GGG | + | tig0024517:35944-35963 | Msa1417780:CDS | 35.0% | |
| !! | GTTTCTGGAATGCTTAAATG+AGG | - | tig0024517:36015-36034 | Msa1417780:intergenic | 35.0% |
| AGATCTTGTTAATCTGCTTG+CGG | - | tig0024517:36053-36072 | Msa1417780:intergenic | 35.0% | |
| ! | TGTTTGTGTGTTCTCTCTTT+TGG | + | tig0024517:36241-36260 | Msa1417780:intron | 35.0% |
| TTTATAACCTTGAGGTGAAG+TGG | + | tig0024517:36300-36319 | Msa1417780:intron | 35.0% | |
| !! | TTCTATTGTGTTGATGATGG+AGG | + | tig0024517:36356-36375 | Msa1417780:intron | 35.0% |
| AACATGAAACAAAACCAGCA+AGG | - | tig0024517:36414-36433 | Msa1417780:intergenic | 35.0% | |
| TATTTCTTGTTGGGTAGAGA+TGG | + | tig0024517:36444-36463 | Msa1417780:intron | 35.0% | |
| GCATTATATTGCAGTTGGAA+CGG | + | tig0024517:36648-36667 | Msa1417780:intron | 35.0% | |
| TCGTGATATATACCTTGATC+TGG | + | tig0024517:36759-36778 | Msa1417780:intron | 35.0% | |
| ATTGCAAACTCTATTGCAGA+TGG | - | tig0024517:36835-36854 | Msa1417780:intergenic | 35.0% | |
| GCTGATGAGACTTGATTTAC+CGG | - | tig0024517:29189-29208 | Msa1417780:intergenic | 40.0% | |
| AACATTGGGACGGAAATTCT+CGG | - | tig0024517:29222-29241 | Msa1417780:intergenic | 40.0% | |
| !! | GAAGTATCGATGATGGTGAT+AGG | - | tig0024517:29299-29318 | Msa1417780:intergenic | 40.0% |
| CCATCATCGATACTTCTTCT+CGG | + | tig0024517:29303-29322 | Msa1417780:CDS | 40.0% | |
| CGCATGAATTGGAATCGATT+AGG | + | tig0024517:29400-29419 | Msa1417780:intron | 40.0% | |
| AATCGATTAGGCTAAAGCAC+TGG | + | tig0024517:29412-29431 | Msa1417780:intron | 40.0% | |
| ! | TTACAGATTTAGGGCCTGTT+TGG | - | tig0024517:30329-30348 | Msa1417780:intergenic | 40.0% |
| GATTAGGGTAAACACTTCCT+TGG | - | tig0024517:30549-30568 | Msa1417780:intergenic | 40.0% | |
| ACATGCATAAGTGAGGACAA+CGG | - | tig0024517:30678-30697 | Msa1417780:intergenic | 40.0% | |
| GTCTATCACATGCATAAGTG+AGG | - | tig0024517:30685-30704 | Msa1417780:intergenic | 40.0% | |
| GGTGAATGTTCCAGTTATAG+TGG | + | tig0024517:31037-31056 | Msa1417780:intron | 40.0% | |
| TTTGCGAGATGAAAATCAGC+AGG | + | tig0024517:31076-31095 | Msa1417780:CDS | 40.0% | |
| CAATGCAAGTTTCAATCTCG+CGG | - | tig0024517:31142-31161 | Msa1417780:intergenic | 40.0% | |
| TTTATTCTCTGCGACTCAGA+CGG | + | tig0024517:31410-31429 | Msa1417780:CDS | 40.0% | |
| ! | TGCTGAACTGAACGATTTTC+AGG | + | tig0024517:31451-31470 | Msa1417780:CDS | 40.0% |
| TTTACACCCACAATTTCTGC+TGG | - | tig0024517:31700-31719 | Msa1417780:intergenic | 40.0% | |
| ! | GACGCCCTTTTTCTATGAAA+AGG | - | tig0024517:31801-31820 | Msa1417780:intergenic | 40.0% |
| AGGAAAGCAATCTACCTTTC+CGG | - | tig0024517:32314-32333 | Msa1417780:intergenic | 40.0% | |
| TATGACACGGAATCTTCTGT+TGG | + | tig0024517:32339-32358 | Msa1417780:intron | 40.0% | |
| ATGACACGGAATCTTCTGTT+GGG | + | tig0024517:32340-32359 | Msa1417780:intron | 40.0% | |
| ACAGTGAAGAAGCAAAGACT+CGG | - | tig0024517:32415-32434 | Msa1417780:intergenic | 40.0% | |
| AATTTACATGTGAGGACCCT+TGG | + | tig0024517:32454-32473 | Msa1417780:intron | 40.0% | |
| TTAAATTGCAGTCCCTGGAT+CGG | + | tig0024517:32502-32521 | Msa1417780:intron | 40.0% | |
| CTCATATAGATTTCCGATCC+AGG | - | tig0024517:32518-32537 | Msa1417780:intergenic | 40.0% | |
| CTGGATCGGAAATCTATATG+AGG | + | tig0024517:32516-32535 | Msa1417780:CDS | 40.0% | |
| CAATGTTCATAGAAGAGTGG+TGG | + | tig0024517:32650-32669 | Msa1417780:intron | 40.0% | |
| ACTCATGACACTTCTAAACC+CGG | + | tig0024517:33152-33171 | Msa1417780:CDS | 40.0% | |
| CTAATATACATAGGGTTCCC+TGG | + | tig0024517:33192-33211 | Msa1417780:CDS | 40.0% | |
| ! | GTATTGCAGTGCTTCGTTTT+TGG | + | tig0024517:33288-33307 | Msa1417780:CDS | 40.0% |
| ACAGCAATAAGACATGATGC+CGG | - | tig0024517:33412-33431 | Msa1417780:intergenic | 40.0% | |
| TGCTGTTGAATTCATACTGC+AGG | + | tig0024517:33426-33445 | Msa1417780:intron | 40.0% | |
| AGCTTATAATCCAACCAACG+AGG | + | tig0024517:33460-33479 | Msa1417780:CDS | 40.0% | |
| GTGTTGAAAGAGATTCCAGA+AGG | + | tig0024517:33717-33736 | Msa1417780:CDS | 40.0% | |
| ATATCAACGGTCACCTATCA+TGG | - | tig0024517:33806-33825 | Msa1417780:intergenic | 40.0% | |
| AGGCTGAATACCACAATTTC+GGG | + | tig0024517:33922-33941 | Msa1417780:intron | 40.0% | |
| TGCTTATAAACGAGACTGGA+GGG | - | tig0024517:33980-33999 | Msa1417780:intergenic | 40.0% | |
| TTGCTTATAAACGAGACTGG+AGG | - | tig0024517:33981-34000 | Msa1417780:intergenic | 40.0% | |
| ! | TAGTGATGGAAGATGTTCCA+AGG | + | tig0024517:34083-34102 | Msa1417780:intron | 40.0% |
| AGCAACTCATACTAAGTACC+TGG | + | tig0024517:34287-34306 | Msa1417780:intron | 40.0% | |
| !! | GAGGGTATCATATGATCTCT+TGG | + | tig0024517:34375-34394 | Msa1417780:CDS | 40.0% |
| ! | TGGAGAAAATACTGGCTATG+AGG | + | tig0024517:34414-34433 | Msa1417780:CDS | 40.0% |
| CTTAGCTGCAACTATAAGAC+AGG | - | tig0024517:34443-34462 | Msa1417780:intergenic | 40.0% | |
| CTGTCTTATAGTTGCAGCTA+AGG | + | tig0024517:34441-34460 | Msa1417780:CDS | 40.0% | |
| TGATCTGGATCCATTTGCAT+TGG | + | tig0024517:34465-34484 | Msa1417780:CDS | 40.0% | |
| TGGCTATACAAGAGTCAACT+AGG | + | tig0024517:34485-34504 | Msa1417780:CDS | 40.0% | |
| GGCTATACAAGAGTCAACTA+GGG | + | tig0024517:34486-34505 | Msa1417780:CDS | 40.0% | |
| TAGAGATTTAATGCGGCGAA+TGG | + | tig0024517:34571-34590 | Msa1417780:intron | 40.0% | |
| GATGGCATACAGCAGTAAAA+TGG | - | tig0024517:34799-34818 | Msa1417780:intergenic | 40.0% | |
| TGCTGTATGCCATCTTTGAA+TGG | + | tig0024517:34805-34824 | Msa1417780:intron | 40.0% | |
| TGCCGTGATTATATATGCCA+AGG | - | tig0024517:35263-35282 | Msa1417780:intergenic | 40.0% | |
| AGCTAAAAACCTGGTACTCT+TGG | + | tig0024517:35416-35435 | Msa1417780:intron | 40.0% | |
| !! | AAATGAACTCCAAGAGTACC+AGG | - | tig0024517:35428-35447 | Msa1417780:intergenic | 40.0% |
| TAAGCATAGCTGAGTGTTAG+AGG | + | tig0024517:35765-35784 | Msa1417780:intron | 40.0% | |
| ! | GACATGGCAATGTGTTTTGT+AGG | + | tig0024517:35891-35910 | Msa1417780:intron | 40.0% |
| ! | TTTGTAGGTTAGTCAGGACA+TGG | + | tig0024517:35906-35925 | Msa1417780:intron | 40.0% |
| ! | TTGTAGGTTAGTCAGGACAT+GGG | + | tig0024517:35907-35926 | Msa1417780:intron | 40.0% |
| ACCAATCAGTGTGAAGTTAG+GGG | + | tig0024517:35945-35964 | Msa1417780:CDS | 40.0% | |
| GATCTTGTTAATCTGCTTGC+GGG | - | tig0024517:36052-36071 | Msa1417780:intergenic | 40.0% | |
| ! | CGATCTCTTTTGTGTGTTTC+AGG | + | tig0024517:36078-36097 | Msa1417780:CDS | 40.0% |
| GTTATTCTGATTCACCTTGC+TGG | + | tig0024517:36397-36416 | Msa1417780:intron | 40.0% | |
| CTTACAGGATATATGCTGCA+AGG | + | tig0024517:36695-36714 | Msa1417780:CDS | 40.0% | |
| ! | GAAGAGTGCATCTGGTTAAA+TGG | + | tig0024517:36717-36736 | Msa1417780:intron | 40.0% |
| TGCATCTGGTTAAATGGCAA+AGG | + | tig0024517:36723-36742 | Msa1417780:intron | 40.0% | |
| AGCAGACTAAATCCAGATCA+AGG | - | tig0024517:36774-36793 | Msa1417780:intergenic | 40.0% | |
| TCTGGATTTAGTCTGCTCTT+TGG | + | tig0024517:36777-36796 | Msa1417780:three_prime_UTR | 40.0% | |
| TTAGTCTGCTCTTTGGCTAA+AGG | + | tig0024517:36784-36803 | Msa1417780:three_prime_UTR | 40.0% | |
| TTTATTAGTCAGGGCCTTCA+TGG | + | tig0024517:36952-36971 | Msa1417780:three_prime_UTR | 40.0% | |
| AGACTTGATTTACCGGTCCT+TGG | - | tig0024517:29182-29201 | Msa1417780:intergenic | 45.0% | |
| TAGCGTAGTAGGAGGCAAAA+CGG | - | tig0024517:29249-29268 | Msa1417780:intergenic | 45.0% | |
| AGATCAACAGCTAGCGTAGT+AGG | - | tig0024517:29260-29279 | Msa1417780:intergenic | 45.0% | |
| ATGGTGATAGGAACACGATC+AGG | - | tig0024517:29287-29306 | Msa1417780:intergenic | 45.0% | |
| !! | CCGAGAAGAAGTATCGATGA+TGG | - | tig0024517:29306-29325 | Msa1417780:intergenic | 45.0% |
| ! | GATTTAGGGCCTGTTTGGAT+TGG | - | tig0024517:30324-30343 | Msa1417780:intergenic | 45.0% |
| GAGTTGCTGAAGAACTACAG+CGG | + | tig0024517:30645-30664 | Msa1417780:CDS | 45.0% | |
| AGTTGCTGAAGAACTACAGC+GGG | + | tig0024517:30646-30665 | Msa1417780:CDS | 45.0% | |
| TCATAACCTCTAAGTTGCGG+AGG | - | tig0024517:30748-30767 | Msa1417780:intergenic | 45.0% | |
| TTGCAACCGACCACTATAAC+TGG | - | tig0024517:31050-31069 | Msa1417780:intergenic | 45.0% | |
| TCGCGGAACTGTTGCATTAT+TGG | - | tig0024517:31125-31144 | Msa1417780:intergenic | 45.0% | |
| GCATTGAGTGTTCAGCATCT+AGG | + | tig0024517:31156-31175 | Msa1417780:CDS | 45.0% | |
| TTCAGCATCTAGGCTTATCC+AGG | + | tig0024517:31166-31185 | Msa1417780:CDS | 45.0% | |
| ! | ACAATTTCTGCTGGTTGCAG+AGG | - | tig0024517:31691-31710 | Msa1417780:intergenic | 45.0% |
| TCTGCAACCAGCAGAAATTG+TGG | + | tig0024517:31690-31709 | Msa1417780:CDS | 45.0% | |
| CTGCAACCAGCAGAAATTGT+GGG | + | tig0024517:31691-31710 | Msa1417780:CDS | 45.0% | |
| !! | TCTGAAGGTGTTAACGAACG+AGG | + | tig0024517:31742-31761 | Msa1417780:CDS | 45.0% |
| CGAACGAGGACTTACTTTGA+CGG | + | tig0024517:31756-31775 | Msa1417780:CDS | 45.0% | |
| GAACGAGGACTTACTTTGAC+GGG | + | tig0024517:31757-31776 | Msa1417780:CDS | 45.0% | |
| TGGACTGTGCTCAGAAAGTT+CGG | + | tig0024517:31832-31851 | Msa1417780:CDS | 45.0% | |
| CAACATCCCATCCTAGATGA+AGG | - | tig0024517:32255-32274 | Msa1417780:intergenic | 45.0% | |
| ! | AGAATTGTTTTCCACTGCCC+CGG | + | tig0024517:32292-32311 | Msa1417780:CDS | 45.0% |
| GAAAGCAATCTACCTTTCCG+GGG | - | tig0024517:32312-32331 | Msa1417780:intergenic | 45.0% | |
| GGAAAGCAATCTACCTTTCC+GGG | - | tig0024517:32313-32332 | Msa1417780:intergenic | 45.0% | |
| ! | GCTTGATGCATTTTTGTCCG+AGG | + | tig0024517:32573-32592 | Msa1417780:CDS | 45.0% |
| AATAGAAGACTCGTGCACCT+CGG | - | tig0024517:32593-32612 | Msa1417780:intergenic | 45.0% | |
| !! | ATAAGAGTGGTGGGCTTCTA+TGG | + | tig0024517:32828-32847 | Msa1417780:intron | 45.0% |
| CAATGTCTGTAGAAGAGTCG+CGG | + | tig0024517:32952-32971 | Msa1417780:intron | 45.0% | |
| AATGTCTGTAGAAGAGTCGC+GGG | + | tig0024517:32953-32972 | Msa1417780:intron | 45.0% | |
| ! | CAGCAGATAATGGTTCACCA+GGG | - | tig0024517:33212-33231 | Msa1417780:intergenic | 45.0% |
| ! | ACAGCAGATAATGGTTCACC+AGG | - | tig0024517:33213-33232 | Msa1417780:intergenic | 45.0% |
| !! | GTTTTTGGGCCTAGAAAGTC+CGG | + | tig0024517:33303-33322 | Msa1417780:CDS | 45.0% |
| AGACTTGCAACTTCACCTTC+TGG | - | tig0024517:33735-33754 | Msa1417780:intergenic | 45.0% | |
| AGAAGGTGAAGTTGCAAGTC+TGG | + | tig0024517:33734-33753 | Msa1417780:CDS | 45.0% | |
| GGCTGAATACCACAATTTCG+GGG | + | tig0024517:33923-33942 | Msa1417780:intron | 45.0% | |
| CTTATAAACGAGACTGGAGG+GGG | - | tig0024517:33978-33997 | Msa1417780:intergenic | 45.0% | |
| GCTTATAAACGAGACTGGAG+GGG | - | tig0024517:33979-33998 | Msa1417780:intergenic | 45.0% | |
| TTAGGTCTGACGAGTCTTCA+TGG | + | tig0024517:34353-34372 | Msa1417780:intron | 45.0% | |
| GATCTCTTGGTACAGATTGC+TGG | + | tig0024517:34388-34407 | Msa1417780:CDS | 45.0% | |
| TTGGTACAGATTGCTGGTCA+TGG | + | tig0024517:34394-34413 | Msa1417780:CDS | 45.0% | |
| GCTGGTCATGGAGAAAATAC+TGG | + | tig0024517:34406-34425 | Msa1417780:CDS | 45.0% | |
| AGTTGCAGCTAAGGATGATC+TGG | + | tig0024517:34450-34469 | Msa1417780:CDS | 45.0% | |
| ! | CTAACACTCAGCTGTGCTTT+TGG | - | tig0024517:35202-35221 | Msa1417780:intergenic | 45.0% |
| ! | GACGGCTCTTTTTCTTGACA+AGG | - | tig0024517:35292-35311 | Msa1417780:intergenic | 45.0% |
| GACTTGCAAGCTATGAAGCA+CGG | + | tig0024517:35492-35511 | Msa1417780:intron | 45.0% | |
| CAAGCTATGAAGCACGGATA+TGG | + | tig0024517:35498-35517 | Msa1417780:intron | 45.0% | |
| TGCTTGCAAGCTATGAAGCA+CGG | - | tig0024517:35650-35669 | Msa1417780:intergenic | 45.0% | |
| ! | GCTTCATAGCTTGCAAGCAA+AGG | + | tig0024517:35651-35670 | Msa1417780:intron | 45.0% |
| GAGTGTTAGAGGAGATTGTC+AGG | + | tig0024517:35776-35795 | Msa1417780:intron | 45.0% | |
| TCCCCTAACTTCACACTGAT+TGG | - | tig0024517:35949-35968 | Msa1417780:intergenic | 45.0% | |
| GCTCAGCAGCAGTTACAATT+CGG | - | tig0024517:35990-36009 | Msa1417780:intergenic | 45.0% | |
| AGCATTCCAGAAACTGAAGC+TGG | + | tig0024517:36021-36040 | Msa1417780:CDS | 45.0% | |
| GTCTTTCCAGCTTCAGTTTC+TGG | - | tig0024517:36030-36049 | Msa1417780:intergenic | 45.0% | |
| ATAACCTTGAGGTGAAGTGG+TGG | + | tig0024517:36303-36322 | Msa1417780:intron | 45.0% | |
| CTTGTTGGGTAGAGATGGTT+AGG | + | tig0024517:36449-36468 | Msa1417780:intron | 45.0% | |
| TTGGGTAGAGATGGTTAGGT+AGG | + | tig0024517:36453-36472 | Msa1417780:intron | 45.0% | |
| TGGGTAGAGATGGTTAGGTA+GGG | + | tig0024517:36454-36473 | Msa1417780:intron | 45.0% | |
| ! | AATGGCAAAGGCTTTGTGCA+TGG | + | tig0024517:36735-36754 | Msa1417780:intron | 45.0% |
| ! | ATGGCAAAGGCTTTGTGCAT+GGG | + | tig0024517:36736-36755 | Msa1417780:intron | 45.0% |
| !! | AAAATAAAAACTATAAATTT+AGG | + | tig0024517:34124-34143 | Msa1417780:intron | 5.0% |
| !! | AAATAAAAACTATAAATTTA+GGG | + | tig0024517:34125-34144 | Msa1417780:intron | 5.0% |
| ACGGAAATTCTCGGTGGAAG+CGG | - | tig0024517:29213-29232 | Msa1417780:intergenic | 50.0% | |
| ATTGGGACGGAAATTCTCGG+TGG | - | tig0024517:29219-29238 | Msa1417780:intergenic | 50.0% | |
| AAACGGGAGCAACATTGGGA+CGG | - | tig0024517:29232-29251 | Msa1417780:intergenic | 50.0% | |
| GGCAAAACGGGAGCAACATT+GGG | - | tig0024517:29236-29255 | Msa1417780:intergenic | 50.0% | |
| AGGCAAAACGGGAGCAACAT+TGG | - | tig0024517:29237-29256 | Msa1417780:intergenic | 50.0% | |
| AGCGTAGTAGGAGGCAAAAC+GGG | - | tig0024517:29248-29267 | Msa1417780:intergenic | 50.0% | |
| TCAACAGCTAGCGTAGTAGG+AGG | - | tig0024517:29257-29276 | Msa1417780:intergenic | 50.0% | |
| TTCATTTAGGGAAGGGGGGA+GGG | - | tig0024517:30832-30851 | Msa1417780:intergenic | 50.0% | |
| ATTCATTTAGGGAAGGGGGG+AGG | - | tig0024517:30833-30852 | Msa1417780:intergenic | 50.0% | |
| TATAGTGGTCGGTTGCAAGC+TGG | + | tig0024517:31052-31071 | Msa1417780:CDS | 50.0% | |
| TTGGCGACATCACCTGTTCT+AGG | - | tig0024517:31106-31125 | Msa1417780:intergenic | 50.0% | |
| !! | CTCTAAAGCCTCGATGTGTG+CGG | + | tig0024517:31372-31391 | Msa1417780:CDS | 50.0% |
| ! | TCTAAAGCCTCGATGTGTGC+GGG | + | tig0024517:31373-31392 | Msa1417780:CDS | 50.0% |
| !! | AAGGGCGTCTTGAGACTACA+TGG | + | tig0024517:31812-31831 | Msa1417780:CDS | 50.0% |
| ! | TCAGGAGTGCGCTTCAAAGT+TGG | - | tig0024517:31895-31914 | Msa1417780:intergenic | 50.0% |
| ! | TTTGAAGCGCACTCCTGATC+AGG | + | tig0024517:31897-31916 | Msa1417780:CDS | 50.0% |
| TTCAGGGTCACATGCGCAAA+AGG | - | tig0024517:32139-32158 | Msa1417780:intergenic | 50.0% | |
| AGAAGAGTCGCGGGTTTCTA+TGG | + | tig0024517:32962-32981 | Msa1417780:intron | 50.0% | |
| AGATTCTCCACACTGAAGGC+CGG | - | tig0024517:33174-33193 | Msa1417780:intergenic | 50.0% | |
| GTCACACGGACAGCAGATAA+TGG | - | tig0024517:33222-33241 | Msa1417780:intergenic | 50.0% | |
| TATCTGCTGTCCGTGTGACT+AGG | + | tig0024517:33223-33242 | Msa1417780:CDS | 50.0% | |
| ! | GCGGATTTTCCGGACTTTCT+AGG | - | tig0024517:33315-33334 | Msa1417780:intergenic | 50.0% |
| GCATAACGATCCTCGTTGGT+TGG | - | tig0024517:33473-33492 | Msa1417780:intergenic | 50.0% | |
| CACAGCATAACGATCCTCGT+TGG | - | tig0024517:33477-33496 | Msa1417780:intergenic | 50.0% | |
| AGGTGAAGTTGCAAGTCTGG+TGG | + | tig0024517:33737-33756 | Msa1417780:CDS | 50.0% | |
| TGAGGCCAAAGACTCCTTGT+CGG | - | tig0024517:33763-33782 | Msa1417780:intergenic | 50.0% | |
| GTCTGACGAGTCTTCATGGA+GGG | + | tig0024517:34357-34376 | Msa1417780:CDS | 50.0% | |
| ! | TGCGGCGAATGGACACATTT+TGG | + | tig0024517:34582-34601 | Msa1417780:intron | 50.0% |
| CATTAGGCATGTCCTCGTGT+CGG | - | tig0024517:35617-35636 | Msa1417780:intergenic | 50.0% | |
| TAGTCAGGACATGGGAGTAG+AGG | + | tig0024517:35915-35934 | Msa1417780:CDS | 50.0% | |
| CAGCAGCAGTTACAATTCGG+CGG | - | tig0024517:35987-36006 | Msa1417780:intergenic | 50.0% | |
| ATAGCCACCACTTCACCTCA+AGG | - | tig0024517:36310-36329 | Msa1417780:intergenic | 50.0% | |
| TATTGCAGTTGGAACGGCAG+TGG | + | tig0024517:36654-36673 | Msa1417780:intron | 50.0% | |
| ! | TTGTTGGGATCGGTGCTTAC+AGG | + | tig0024517:36680-36699 | Msa1417780:CDS | 50.0% |
| ! | GCGTGTGGGTTAACGGTGTT+AGG | - | tig0024517:29126-29145 | Msa0363390:intergenic | 55.0% |
| ! | GGTACGAGCGTGTGGGTTAA+CGG | - | tig0024517:29133-29152 | Msa0363390:intergenic | 55.0% |
| GTTAACCCACACGCTCGTAC+CGG | + | tig0024517:29132-29151 | Msa1417780:CDS | 55.0% | |
| TGCGACGACGATACGAACTC+CGG | - | tig0024517:29154-29173 | Msa1417780:intergenic | 55.0% | |
| CCTCTAAGTTGCGGAGGTGA+GGG | - | tig0024517:30742-30761 | Msa1417780:intergenic | 55.0% | |
| ACCTCTAAGTTGCGGAGGTG+AGG | - | tig0024517:30743-30762 | Msa1417780:intergenic | 55.0% | |
| TCATTTAGGGAAGGGGGGAG+GGG | - | tig0024517:30831-30850 | Msa1417780:intergenic | 55.0% | |
| TCAGCAGGTGAGCCTAGAAC+AGG | + | tig0024517:31091-31110 | Msa1417780:CDS | 55.0% | |
| TTCAAAGCCCGCACACATCG+AGG | - | tig0024517:31383-31402 | Msa1417780:intergenic | 55.0% | |
| !! | GATGTGTGCGGGCTTTGAAG+CGG | + | tig0024517:31384-31403 | Msa1417780:CDS | 55.0% |
| ! | TGTTTTCCACTGCCCCGGAA+AGG | + | tig0024517:32297-32316 | Msa1417780:CDS | 55.0% |
| AATCTACCTTTCCGGGGCAG+TGG | - | tig0024517:32306-32325 | Msa1417780:intergenic | 55.0% | |
| !! | AGAAGAGTGGTGGGCTTCCA+TGG | + | tig0024517:32660-32679 | Msa1417780:intron | 55.0% |
| !! | GAGTGGTGGGCTTCTATGGA+TGG | + | tig0024517:32832-32851 | Msa1417780:intron | 55.0% |
| TCTAAACCCGGCCTTCAGTG+TGG | + | tig0024517:33164-33183 | Msa1417780:CDS | 55.0% | |
| GATTCTCCACACTGAAGGCC+GGG | - | tig0024517:33173-33192 | Msa1417780:intergenic | 55.0% | |
| GGTCTGACGAGTCTTCATGG+AGG | + | tig0024517:34356-34375 | Msa1417780:intron | 55.0% | |
| CATGACACATGTCCGACACG+AGG | + | tig0024517:35602-35621 | Msa1417780:intron | 55.0% | |
| ACGAGGACATGCCTAATGCC+AGG | + | tig0024517:35619-35638 | Msa1417780:intron | 55.0% | |
| CTATGAAGCACGGACACTCC+TGG | - | tig0024517:35640-35659 | Msa1417780:intergenic | 55.0% | |
| ! | GCTGCAAGGAAGAGTGCATC+TGG | + | tig0024517:36709-36728 | Msa1417780:CDS | 55.0% |
| GAACTCCGGTACGAGCGTGT+GGG | - | tig0024517:29140-29159 | Msa1417780:intergenic | 60.0% | |
| GGAGTTCGTATCGTCGTCGC+AGG | + | tig0024517:29153-29172 | Msa1417780:CDS | 60.0% | |
| ATCGTCGTCGCAGGTGACCA+AGG | + | tig0024517:29162-29181 | Msa1417780:intron | 60.0% | |
| CCCTCACCTCCGCAACTTAG+AGG | + | tig0024517:30739-30758 | Msa1417780:CDS | 60.0% | |
| ATTTAGGGAAGGGGGGAGGG+GGG | - | tig0024517:30829-30848 | Msa1417780:intergenic | 60.0% | |
| CATTTAGGGAAGGGGGGAGG+GGG | - | tig0024517:30830-30849 | Msa1417780:intergenic | 60.0% | |
| CTCTGCGACTCAGACGGAGA+TGG | + | tig0024517:31416-31435 | Msa1417780:CDS | 60.0% | |
| CGCGTCGCTTCCTAGTCACA+CGG | - | tig0024517:33236-33255 | Msa1417780:intergenic | 60.0% | |
| TGCAAGTCTGGTGGCCGACA+AGG | + | tig0024517:33746-33765 | Msa1417780:CDS | 60.0% | |
| GGTGGCCGACAAGGAGTCTT+TGG | + | tig0024517:33755-33774 | Msa1417780:CDS | 60.0% | |
| GCACGGACACTCCTGGCATT+AGG | - | tig0024517:35633-35652 | Msa1417780:intergenic | 60.0% | |
| TGCAGTTGGAACGGCAGTGG+CGG | + | tig0024517:36657-36676 | Msa1417780:intron | 60.0% | |
| GAACGGCAGTGGCGGTTGTT+GGG | + | tig0024517:36665-36684 | Msa1417780:CDS | 60.0% | |
| GCAGTGGCGGTTGTTGGGAT+CGG | + | tig0024517:36670-36689 | Msa1417780:CDS | 60.0% | |
| CGAACTCCGGTACGAGCGTG+TGG | - | tig0024517:29141-29160 | Msa1417780:intergenic | 65.0% | |
| CGTCGCAGGTGACCAAGGAC+CGG | + | tig0024517:29167-29186 | Msa1417780:intron | 65.0% | |
| GGAACGGCAGTGGCGGTTGT+TGG | + | tig0024517:36664-36683 | Msa1417780:CDS | 65.0% | |
| GAAGGGGGGAGGGGGGCTAA+AGG | - | tig0024517:30822-30841 | Msa1417780:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024517 | gene | 29108 | 37027 | 29108 | ID=Msa1417780;Name=Msa1417780 |
| tig0024517 | mRNA | 29108 | 37027 | 29108 | ID=Msa1417780-mRNA-1;Parent=Msa1417780;Name=Msa1417780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.86|0.81|1|0.93|0.93|16|253|622 |
| tig0024517 | exon | 29108 | 29174 | 29108 | ID=Msa1417780-mRNA-1:exon:51;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 29270 | 29324 | 29270 | ID=Msa1417780-mRNA-1:exon:52;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 30628 | 30760 | 30628 | ID=Msa1417780-mRNA-1:exon:53;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 31038 | 31187 | 31038 | ID=Msa1417780-mRNA-1:exon:54;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 31296 | 31472 | 31296 | ID=Msa1417780-mRNA-1:exon:55;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 31670 | 31918 | 31670 | ID=Msa1417780-mRNA-1:exon:56;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 32061 | 32129 | 32061 | ID=Msa1417780-mRNA-1:exon:57;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 32263 | 32318 | 32263 | ID=Msa1417780-mRNA-1:exon:58;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 32513 | 32594 | 32513 | ID=Msa1417780-mRNA-1:exon:59;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 33147 | 33358 | 33147 | ID=Msa1417780-mRNA-1:exon:60;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 33448 | 33541 | 33448 | ID=Msa1417780-mRNA-1:exon:61;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 33699 | 33811 | 33699 | ID=Msa1417780-mRNA-1:exon:62;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 34357 | 34507 | 34357 | ID=Msa1417780-mRNA-1:exon:63;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 35913 | 36099 | 35913 | ID=Msa1417780-mRNA-1:exon:64;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 36662 | 36735 | 36662 | ID=Msa1417780-mRNA-1:exon:65;Parent=Msa1417780-mRNA-1 |
| tig0024517 | exon | 36775 | 37027 | 36775 | ID=Msa1417780-mRNA-1:exon:66;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 29108 | 29174 | 29108 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 29270 | 29324 | 29270 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 30628 | 30760 | 30628 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 31038 | 31187 | 31038 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 31296 | 31472 | 31296 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 31670 | 31918 | 31670 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 32061 | 32129 | 32061 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 32263 | 32318 | 32263 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 32513 | 32594 | 32513 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 33147 | 33358 | 33147 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 33448 | 33541 | 33448 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 33699 | 33811 | 33699 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 34357 | 34507 | 34357 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 35913 | 36099 | 35913 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | CDS | 36662 | 36735 | 36662 | ID=Msa1417780-mRNA-1:cds;Parent=Msa1417780-mRNA-1 |
| tig0024517 | three_prime_UTR | 36775 | 37027 | 36775 | ID=Msa1417780-mRNA-1:three_prime_utr;Parent=Msa1417780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
