Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128040 | XP_003591383.1 | 91.507 | 365 | 8 | 1 | 1 | 342 | 1 | 365 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128040 | G7ICW3 | 91.507 | 365 | 8 | 1 | 1 | 342 | 1 | 365 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0128040 | Msa1400210 | 0.809056 | 2.284543e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128040 | MtrunA17_Chr1g0194501 | 91.507 | 365 | 8 | 1 | 1 | 342 | 1 | 365 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128040 | AT3G62370.1 | 62.674 | 359 | 111 | 3 | 4 | 341 | 3 | 359 | 7.98e-171 | 479 |
Find 116 sgRNAs with CRISPR-Local
Find 524 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATTCCGGGACGGCTTTA+TGG | 0.170463 | 1_3:+57695826 | Msa0128040:CDS |
| CTGTTTGATACACTATTTAA+AGG | 0.204813 | 1_3:-57700338 | None:intergenic |
| CGAGTTTATATAAGTGGATT+TGG | 0.212359 | 1_3:-57693090 | None:intergenic |
| CTCTAGGCCTTTGAGGACTA+TGG | 0.252101 | 1_3:+57699394 | Msa0128040:CDS |
| TTCTTTCTGCTTCAAGTTGA+TGG | 0.258059 | 1_3:+57693551 | Msa0128040:CDS |
| GTTGCACTTATGTTTCAAAT+TGG | 0.278592 | 1_3:+57694396 | Msa0128040:CDS |
| GGCACTGGTCCTTCAGGTTC+TGG | 0.288724 | 1_3:+57696063 | Msa0128040:CDS |
| TTCAATTGGAAATGCTATTC+CGG | 0.289510 | 1_3:+57695813 | Msa0128040:CDS |
| GAGAACCCTTATGCAGAAAA+TGG | 0.296262 | 1_3:+57699344 | Msa0128040:CDS |
| TTGGATGGCACTGGTCCTTC+AGG | 0.301058 | 1_3:+57696057 | Msa0128040:CDS |
| TTCATACAGGTTTGGCCATT+TGG | 0.305048 | 1_3:+57695999 | Msa0128040:intron |
| GTTCAATAGTCCAAGTATAA+TGG | 0.308197 | 1_3:+57700505 | Msa0128040:three_prime_UTR |
| TGTATCAAACAGCTTGAGTT+TGG | 0.320319 | 1_3:+57700349 | Msa0128040:three_prime_UTR |
| AAGTGTAAAGAGAATGTAAA+AGG | 0.325253 | 1_3:+57692891 | Msa0128040:five_prime_UTR |
| CCCGGTGTTATTACACTTGA+TGG | 0.331253 | 1_3:+57693317 | Msa0128040:CDS |
| GTCAACTTCATGACCTTTGC+AGG | 0.335113 | 1_3:-57695779 | None:intergenic |
| CATTTACGATTGTACTATAT+AGG | 0.336446 | 1_3:+57700384 | Msa0128040:three_prime_UTR |
| GGTGATTATGCCTACTCTAA+TGG | 0.343433 | 1_3:+57693572 | Msa0128040:CDS |
| TGTCTGTGTTTGTGAGTTAT+CGG | 0.344354 | 1_3:+57700274 | Msa0128040:CDS |
| GCAAGATGTCTGTCGGATTC+TGG | 0.349571 | 1_3:+57700070 | Msa0128040:CDS |
| ACTACTCTGTTAACTGTGAT+TGG | 0.350378 | 1_3:+57700130 | Msa0128040:CDS |
| TCAATTGGAAATGCTATTCC+GGG | 0.355065 | 1_3:+57695814 | Msa0128040:CDS |
| GTATCTGCAGTGTGGATTCC+AGG | 0.373410 | 1_3:-57696034 | None:intergenic |
| GGTAAGCCATGGCACGGTTC+CGG | 0.376073 | 1_3:+57700105 | Msa0128040:CDS |
| GGTCCATGGAGCTGTGAAAC+CGG | 0.385078 | 1_3:+57693263 | Msa0128040:CDS |
| ATTTCCATCTCTATTGTCAA+TGG | 0.406014 | 1_3:-57695857 | None:intergenic |
| CTACTCTGTTAACTGTGATT+GGG | 0.408599 | 1_3:+57700131 | Msa0128040:CDS |
| TTGAATTCTCTAGGCCTTTG+AGG | 0.408768 | 1_3:+57699387 | Msa0128040:CDS |
| AAGGTTCTCCATTGGAGTAA+AGG | 0.412113 | 1_3:-57700319 | None:intergenic |
| TTGTGTCTTGTTGCTAACTA+AGG | 0.417284 | 1_3:-57692868 | None:intergenic |
| AATAACACCGGGTTGAAATT+CGG | 0.421139 | 1_3:-57693306 | None:intergenic |
| GTATCAAACAGCTTGAGTTT+GGG | 0.423240 | 1_3:+57700350 | Msa0128040:three_prime_UTR |
| AACGTGCAATTTCCTTTCAC+AGG | 0.428801 | 1_3:+57700554 | Msa0128040:three_prime_UTR |
| TGGAGTAAAGGCTACACTCT+TGG | 0.432096 | 1_3:-57700307 | None:intergenic |
| GGAGTAAAGGCTACACTCTT+GGG | 0.441900 | 1_3:-57700306 | None:intergenic |
| GTGATTATGCCTACTCTAAT+GGG | 0.442592 | 1_3:+57693573 | Msa0128040:CDS |
| GCAACTTACATTATGATAAG+AGG | 0.443186 | 1_3:-57694427 | None:intergenic |
| GAATCCACACTGCAGATACT+TGG | 0.443373 | 1_3:+57696038 | Msa0128040:CDS |
| GACTATGGATCATCTGCAAC+AGG | 0.447825 | 1_3:+57699409 | Msa0128040:CDS |
| TTGATGGTCATGCCGATGAT+TGG | 0.452530 | 1_3:+57693333 | Msa0128040:CDS |
| ATTTGGTTGATCTTTATGCC+TGG | 0.456544 | 1_3:+57696016 | Msa0128040:CDS |
| TGCCATGGCTTACCATCTAC+TGG | 0.461844 | 1_3:-57700096 | None:intergenic |
| TTTCCATCTCTATTGTCAAT+GGG | 0.463067 | 1_3:-57695856 | None:intergenic |
| TTCCGGGACGGCTTTATGGC+GGG | 0.467885 | 1_3:+57695830 | Msa0128040:CDS |
| GGATTCTGGTATCCAGTAGA+TGG | 0.471064 | 1_3:+57700084 | Msa0128040:CDS |
| GTCTGTGTTTGTGAGTTATC+GGG | 0.479240 | 1_3:+57700275 | Msa0128040:CDS |
| ACTATTTAAAGGTTCTCCAT+TGG | 0.483409 | 1_3:-57700327 | None:intergenic |
| GTGGCAAGGTAGATCACAAA+TGG | 0.484756 | 1_3:+57692822 | Msa0128040:five_prime_UTR |
| GTTTATTCACACGAAGAGTC+GGG | 0.494402 | 1_3:+57693242 | Msa0128040:CDS |
| ATTTGATAGATCGCGATTTG+TGG | 0.495040 | 1_3:-57693061 | None:intergenic |
| AGATGGAACTCCATTATACT+TGG | 0.495141 | 1_3:-57700515 | None:intergenic |
| AAGGAAAATGCAACAAGTGC+TGG | 0.498184 | 1_3:+57692910 | Msa0128040:five_prime_UTR |
| GAGATGGAAATGGCGGTGAC+AGG | 0.505100 | 1_3:+57695869 | Msa0128040:CDS |
| ATTGACAATAGAGATGGAAA+TGG | 0.512303 | 1_3:+57695859 | Msa0128040:CDS |
| GAGTGTAGCCTTTACTCCAA+TGG | 0.521817 | 1_3:+57700311 | Msa0128040:CDS |
| CACACGAAGAGTCGGGTCCA+TGG | 0.523429 | 1_3:+57693249 | Msa0128040:CDS |
| TTTGTTGATTGAACTTGAAG+TGG | 0.523706 | 1_3:+57692991 | Msa0128040:five_prime_UTR |
| TGTTTATTCACACGAAGAGT+CGG | 0.527511 | 1_3:+57693241 | Msa0128040:CDS |
| CAGGATGTGCAATTCACCAT+TGG | 0.528409 | 1_3:+57700039 | Msa0128040:intron |
| ATCAATGTCCTTCCAATCAT+CGG | 0.529350 | 1_3:-57693345 | None:intergenic |
| GTCCATGGAGCTGTGAAACC+GGG | 0.530304 | 1_3:+57693264 | Msa0128040:CDS |
| AGCAAGAAGAAGAGAGAAGT+GGG | 0.530565 | 1_3:-57693372 | None:intergenic |
| GATGATTGGAAGGACATTGA+TGG | 0.532585 | 1_3:+57693347 | Msa0128040:CDS |
| GACCCGGTTTCACAGCTCCA+TGG | 0.533933 | 1_3:-57693266 | None:intergenic |
| AGGCATAAAGATCAACCAAA+TGG | 0.542098 | 1_3:-57696014 | None:intergenic |
| GTTGATTGAACTTGAAGTGG+TGG | 0.542845 | 1_3:+57692994 | Msa0128040:five_prime_UTR |
| TTCCCGCCATAAAGCCGTCC+CGG | 0.550538 | 1_3:-57695832 | None:intergenic |
| TTCGTGTGAATAAACATCAT+AGG | 0.556825 | 1_3:-57693234 | None:intergenic |
| TTGAAACATAAGTGCAACAG+AGG | 0.557620 | 1_3:-57694391 | None:intergenic |
| ACTCAGCATCAAGTAGCTCA+TGG | 0.557960 | 1_3:+57700202 | Msa0128040:CDS |
| GATGCTGAAAATGAATTCAA+TGG | 0.562672 | 1_3:+57693404 | Msa0128040:CDS |
| ACGTGCAATTTCCTTTCACA+GGG | 0.564244 | 1_3:+57700555 | Msa0128040:three_prime_UTR |
| TGCAGATACTTGGATGGCAC+TGG | 0.565255 | 1_3:+57696048 | Msa0128040:CDS |
| ATTCCGGGACGGCTTTATGG+CGG | 0.565691 | 1_3:+57695829 | Msa0128040:CDS |
| ATGATTGGAAGGACATTGAT+GGG | 0.569537 | 1_3:+57693348 | Msa0128040:CDS |
| CTTAATTGTTGTAAGATGGG+TGG | 0.570771 | 1_3:+57695721 | Msa0128040:intron |
| CTCAACATGAATCTCTGACC+CGG | 0.580275 | 1_3:-57693282 | None:intergenic |
| GATGTGCAATTCACCATTGG+CGG | 0.581517 | 1_3:+57700042 | Msa0128040:CDS |
| TGCACAAATAAGACCTGCAA+AGG | 0.582257 | 1_3:+57695766 | Msa0128040:CDS |
| CAAAGAAAGAAATACCTTCA+CGG | 0.582329 | 1_3:-57693438 | None:intergenic |
| CTTATGTTTCAAATTGGAGA+TGG | 0.582716 | 1_3:+57694402 | Msa0128040:CDS |
| CCACACTGCAGATACTTGGA+TGG | 0.585406 | 1_3:+57696042 | Msa0128040:CDS |
| TTCATTGAGTGGCAAGTCAG+TGG | 0.585865 | 1_3:+57700179 | Msa0128040:CDS |
| TGCAACAACTAAGCACAAGA+TGG | 0.588619 | 1_3:-57700532 | None:intergenic |
| AATCCCATTGACAATAGAGA+TGG | 0.588744 | 1_3:+57695853 | Msa0128040:CDS |
| GAGCAAGAAGAAGAGAGAAG+TGG | 0.590725 | 1_3:-57693373 | None:intergenic |
| CATCTTGCTTGATCCGCCAA+TGG | 0.594402 | 1_3:-57700055 | None:intergenic |
| CCATCAAGTGTAATAACACC+GGG | 0.594542 | 1_3:-57693317 | None:intergenic |
| ACCATCAAGTGTAATAACAC+CGG | 0.597071 | 1_3:-57693318 | None:intergenic |
| TTGTTGCAGAGTGTGCATGA+TGG | 0.598722 | 1_3:+57693518 | Msa0128040:intron |
| ACAGTTAACAGAGTAGTGTC+CGG | 0.602771 | 1_3:-57700124 | None:intergenic |
| GCAGGTCTTATTTGTGCACG+AGG | 0.611952 | 1_3:-57695761 | None:intergenic |
| GGATCAAGCAAGATGTCTGT+CGG | 0.616205 | 1_3:+57700063 | Msa0128040:CDS |
| TTGGAAATGCTATTCCGGGA+CGG | 0.622396 | 1_3:+57695818 | Msa0128040:CDS |
| GTGCAATTTCCTTTCACAGG+GGG | 0.623334 | 1_3:+57700557 | Msa0128040:three_prime_UTR |
| TAGTGTCCGGAACCGTGCCA+TGG | 0.623740 | 1_3:-57700111 | None:intergenic |
| TGGTCATGCCGATGATTGGA+AGG | 0.627013 | 1_3:+57693337 | Msa0128040:CDS |
| GATGATTATGATGCATGAAG+TGG | 0.632238 | 1_3:+57692803 | None:intergenic |
| ATCCAGTAGATGGTAAGCCA+TGG | 0.634636 | 1_3:+57700094 | Msa0128040:CDS |
| GTTGAGTCCGAATTTCAACC+CGG | 0.640532 | 1_3:+57693299 | Msa0128040:CDS |
| TAGATCACAAATGGAATACG+TGG | 0.642073 | 1_3:+57692831 | Msa0128040:five_prime_UTR |
| AGATGATCCATAGTCCTCAA+AGG | 0.643096 | 1_3:-57699401 | None:intergenic |
| GACAATAGAGATGGAAATGG+CGG | 0.643121 | 1_3:+57695862 | Msa0128040:CDS |
| TCTCAGAGCAGTTCATTGAG+TGG | 0.649577 | 1_3:+57700168 | Msa0128040:CDS |
| GAAGCAGAAAGAAAATATCA+CGG | 0.656787 | 1_3:-57693541 | None:intergenic |
| GTAGATGGTAAGCCATGGCA+CGG | 0.658775 | 1_3:+57700099 | Msa0128040:CDS |
| CACATCTTACCCATTAGAGT+AGG | 0.661936 | 1_3:-57693582 | None:intergenic |
| AGATCACAAATGGAATACGT+GGG | 0.665653 | 1_3:+57692832 | Msa0128040:five_prime_UTR |
| TGAAACATAAGTGCAACAGA+GGG | 0.672670 | 1_3:-57694390 | None:intergenic |
| TTGTGCATACCAGAACCTGA+AGG | 0.682415 | 1_3:-57696072 | None:intergenic |
| CCATCCAAGTATCTGCAGTG+TGG | 0.694075 | 1_3:-57696042 | None:intergenic |
| GATCACAAATGGAATACGTG+GGG | 0.698603 | 1_3:+57692833 | Msa0128040:five_prime_UTR |
| TTGTAAGATGGGTGGCTGTG+AGG | 0.702871 | 1_3:+57695729 | Msa0128040:intron |
| TTATGATGCATGAAGTGGCA+AGG | 0.708279 | 1_3:+57692808 | Msa0128040:five_prime_UTR |
| GCTGAAAATGAATTCAATGG+CGG | 0.714687 | 1_3:+57693407 | Msa0128040:CDS |
| CGTGCAATTTCCTTTCACAG+GGG | 0.744932 | 1_3:+57700556 | Msa0128040:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTCTTTTAATG+AGG | - | chr1_3:57695422-57695441 | None:intergenic | 10.0% |
| !! | AAAATAAATTAAAATCAGTT+AGG | + | chr1_3:57695438-57695457 | Msa0128040:intron | 10.0% |
| !! | AAATAAATTAAAATCAGTTA+GGG | + | chr1_3:57695439-57695458 | Msa0128040:intron | 10.0% |
| !!! | TACATAACATTTTTTTTTTA+TGG | + | chr1_3:57698463-57698482 | Msa0128040:intron | 10.0% |
| !!! | TTTTATGTTAAAGTATATTA+TGG | + | chr1_3:57699154-57699173 | Msa0128040:intron | 10.0% |
| !! | TCAAATAGAATTAAAAAATA+GGG | - | chr1_3:57700443-57700462 | None:intergenic | 10.0% |
| !! | TTCAAATAGAATTAAAAAAT+AGG | - | chr1_3:57700444-57700463 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTTTTAAAAAAC+TGG | + | chr1_3:57700582-57700601 | Msa0128040:three_prime_UTR | 10.0% |
| !!! | TTTAAGTTGTTTGATTTTTT+CGG | + | chr1_3:57693681-57693700 | Msa0128040:intron | 15.0% |
| !! | AAAATGTTGAATATATAAAG+AGG | + | chr1_3:57693917-57693936 | Msa0128040:intron | 15.0% |
| !!! | AAGTAATGATATTTTTATTG+AGG | + | chr1_3:57694233-57694252 | Msa0128040:intron | 15.0% |
| !!! | AGTAATGATATTTTTATTGA+GGG | + | chr1_3:57694234-57694253 | Msa0128040:intron | 15.0% |
| !! | ATTATTAAAACAACATAGAT+TGG | + | chr1_3:57694601-57694620 | Msa0128040:intron | 15.0% |
| !!! | TTTGACTTTATTTAATCTTT+TGG | + | chr1_3:57695041-57695060 | Msa0128040:intron | 15.0% |
| !!! | ATTTTTGTATAATCTGTTTT+AGG | + | chr1_3:57695173-57695192 | Msa0128040:intron | 15.0% |
| !!! | AAATAAGTTGAAACAATTTA+TGG | + | chr1_3:57695263-57695282 | Msa0128040:intron | 15.0% |
| !! | AATAAATTAAAATCAGTTAG+GGG | + | chr1_3:57695440-57695459 | Msa0128040:intron | 15.0% |
| !!! | AAAATGTATAAAACATTTTC+AGG | - | chr1_3:57696444-57696463 | None:intergenic | 15.0% |
| !!! | TGTTGTCTAATTTTTATTTT+AGG | + | chr1_3:57697933-57697952 | Msa0128040:intron | 15.0% |
| !!! | GTTGTCTAATTTTTATTTTA+GGG | + | chr1_3:57697934-57697953 | Msa0128040:intron | 15.0% |
| !! | AAAACATATTGTACATATAT+TGG | - | chr1_3:57698374-57698393 | None:intergenic | 15.0% |
| !!! | CAATTTTAATATCATATATG+GGG | - | chr1_3:57699199-57699218 | None:intergenic | 15.0% |
| !!! | CCAATTTTAATATCATATAT+GGG | - | chr1_3:57699200-57699219 | None:intergenic | 15.0% |
| !! | TTATTAATCATAATGAATTC+TGG | + | chr1_3:57699594-57699613 | Msa0128040:intron | 15.0% |
| !!! | ATTTTGTATTTCTGATATTA+TGG | + | chr1_3:57699656-57699675 | Msa0128040:intron | 15.0% |
| !! | TAAAAACGAGTTTATATAAG+TGG | - | chr1_3:57693099-57693118 | None:intergenic | 20.0% |
| !!! | TATTTAGTGGCTTAAAATTT+TGG | + | chr1_3:57693949-57693968 | Msa0128040:intron | 20.0% |
| !!! | ATTTAGTGGCTTAAAATTTT+GGG | + | chr1_3:57693950-57693969 | Msa0128040:intron | 20.0% |
| !!! | ATGATACTCTTTTAATAAGT+TGG | + | chr1_3:57694323-57694342 | Msa0128040:intron | 20.0% |
| !!! | TTCATGTTTTTCAAATCTAA+GGG | + | chr1_3:57694825-57694844 | Msa0128040:intron | 20.0% |
| !! | AGAATTTCTCTAACTTATTT+AGG | - | chr1_3:57695343-57695362 | None:intergenic | 20.0% |
| !! | AATAAGTTAGAGAAATTCTT+AGG | + | chr1_3:57695344-57695363 | Msa0128040:intron | 20.0% |
| !!! | TAATTATTTTAATGAGGTGT+TGG | + | chr1_3:57695556-57695575 | Msa0128040:intron | 20.0% |
| !!! | AATTATTTTAATGAGGTGTT+GGG | + | chr1_3:57695557-57695576 | Msa0128040:intron | 20.0% |
| !! | AAAGTTCTTTAGACTTAAAA+AGG | - | chr1_3:57696260-57696279 | None:intergenic | 20.0% |
| !!! | ATAACTATGCCTTTTATTTA+AGG | + | chr1_3:57696371-57696390 | Msa0128040:intron | 20.0% |
| !!! | TAACTATGCCTTTTATTTAA+GGG | + | chr1_3:57696372-57696391 | Msa0128040:intron | 20.0% |
| !! | ATAGAAAAGCAAAATGATAA+TGG | - | chr1_3:57696467-57696486 | None:intergenic | 20.0% |
| !!! | ATTTCTCTTATAGTTTTTCT+AGG | - | chr1_3:57696779-57696798 | None:intergenic | 20.0% |
| !!! | ATATGTCATTGTTTCTTATA+TGG | - | chr1_3:57696940-57696959 | None:intergenic | 20.0% |
| !! | AGGAAAAGATGAATTAATTA+AGG | + | chr1_3:57697231-57697250 | Msa0128040:intron | 20.0% |
| !! | TGTAAATTCATTATTCACAT+AGG | - | chr1_3:57697639-57697658 | None:intergenic | 20.0% |
| !!! | GATTTTGTGCATATAATTAT+TGG | + | chr1_3:57697665-57697684 | Msa0128040:intron | 20.0% |
| !!! | ATATGAAAGTATGAAACAAT+GGG | - | chr1_3:57697740-57697759 | None:intergenic | 20.0% |
| !! | AGCTTATATATCCAATTATA+TGG | - | chr1_3:57697841-57697860 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTGAACAGTAAA+AGG | - | chr1_3:57698070-57698089 | None:intergenic | 20.0% |
| !!! | CTGATTTTAGAATGAAATAT+TGG | + | chr1_3:57698147-57698166 | Msa0128040:intron | 20.0% |
| !!! | TTTTAGAATGAAATATTGGT+TGG | + | chr1_3:57698151-57698170 | Msa0128040:intron | 20.0% |
| !! | ATTGTTTACCTAATTCTATA+TGG | - | chr1_3:57698207-57698226 | None:intergenic | 20.0% |
| !! | GTATGAATATCATTAAGAAT+CGG | - | chr1_3:57698268-57698287 | None:intergenic | 20.0% |
| !! | TATGTTGAAAGATATTTCTT+TGG | - | chr1_3:57698290-57698309 | None:intergenic | 20.0% |
| !!! | TATATGTACAATATGTTTTC+TGG | + | chr1_3:57698375-57698394 | Msa0128040:intron | 20.0% |
| !! | ATTATAAAAGGAAATTCTTG+TGG | - | chr1_3:57698838-57698857 | None:intergenic | 20.0% |
| !! | CCCATATATGATATTAAAAT+TGG | + | chr1_3:57699197-57699216 | Msa0128040:intron | 20.0% |
| !!! | GCCAATTTTAATATCATATA+TGG | - | chr1_3:57699201-57699220 | None:intergenic | 20.0% |
| !!! | CATATTTTTTTGAATTCTCT+AGG | + | chr1_3:57699378-57699397 | Msa0128040:CDS | 20.0% |
| !! | AACTCAGTTAATTCAAAATA+GGG | - | chr1_3:57699519-57699538 | None:intergenic | 20.0% |
| !! | ATTATATTTGAGAGAACTTA+TGG | - | chr1_3:57699878-57699897 | None:intergenic | 20.0% |
| ! | AAGTGTAAAGAGAATGTAAA+AGG | + | chr1_3:57692891-57692910 | Msa0128040:five_prime_UTR | 25.0% |
| ! | ACTTGAATGTGAATAACAAA+AGG | - | chr1_3:57693465-57693484 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTAATCATGTTAT+CGG | + | chr1_3:57693696-57693715 | Msa0128040:intron | 25.0% |
| !! | TTTTAAGCCACTAAATATAC+CGG | - | chr1_3:57693946-57693965 | None:intergenic | 25.0% |
| ! | TCTCAATGATTGATATTGTT+TGG | + | chr1_3:57694055-57694074 | Msa0128040:intron | 25.0% |
| ! | TATTCATAACAAATCATGAG+TGG | + | chr1_3:57694079-57694098 | Msa0128040:intron | 25.0% |
| !! | ATATCAACTCTTGATTTTAG+CGG | + | chr1_3:57694107-57694126 | Msa0128040:intron | 25.0% |
| ! | TACTTGGATCAATATAATAG+TGG | + | chr1_3:57694149-57694168 | Msa0128040:intron | 25.0% |
| !! | TACAAAAACACTCTCTAAAA+AGG | - | chr1_3:57694558-57694577 | None:intergenic | 25.0% |
| !!! | ATGAAGTTTTTTGGGAATTT+AGG | - | chr1_3:57694802-57694821 | None:intergenic | 25.0% |
| !!! | CTTCATGTTTTTCAAATCTA+AGG | + | chr1_3:57694824-57694843 | Msa0128040:intron | 25.0% |
| !!! | TCATGTTTTTCAAATCTAAG+GGG | + | chr1_3:57694826-57694845 | Msa0128040:intron | 25.0% |
| !!! | TGTTTTTATATGCTATCATG+AGG | + | chr1_3:57695231-57695250 | Msa0128040:intron | 25.0% |
| !!! | AATTCTTTTAATGAGGTGTT+GGG | - | chr1_3:57695415-57695434 | None:intergenic | 25.0% |
| !! | TAATTCTTTTAATGAGGTGT+TGG | - | chr1_3:57695416-57695435 | None:intergenic | 25.0% |
| ! | TTGTCTTAATTGTTGTAAGA+TGG | + | chr1_3:57695717-57695736 | Msa0128040:intron | 25.0% |
| ! | TGTCTTAATTGTTGTAAGAT+GGG | + | chr1_3:57695718-57695737 | Msa0128040:intron | 25.0% |
| ! | ACAATTTATGATGACTATAG+TGG | + | chr1_3:57695933-57695952 | Msa0128040:intron | 25.0% |
| ! | ACAAATGTAACATCTTTAGT+TGG | + | chr1_3:57696091-57696110 | Msa0128040:intron | 25.0% |
| !! | AATAAAAGGCATAGTTATCA+AGG | - | chr1_3:57696369-57696388 | None:intergenic | 25.0% |
| ! | AAAGTAAAACAGAAAATACG+AGG | - | chr1_3:57696511-57696530 | None:intergenic | 25.0% |
| ! | TGATATCTTTCATTAGAGAT+AGG | + | chr1_3:57696546-57696565 | Msa0128040:intron | 25.0% |
| ! | TAATTAGTTGGATAGAGATA+TGG | + | chr1_3:57696820-57696839 | Msa0128040:intron | 25.0% |
| !! | AAATTTTAAATTGGGTGTGT+GGG | - | chr1_3:57697121-57697140 | None:intergenic | 25.0% |
| !! | AGTGGCACAAATTTTAAATT+GGG | - | chr1_3:57697129-57697148 | None:intergenic | 25.0% |
| !! | AAGTGGCACAAATTTTAAAT+TGG | - | chr1_3:57697130-57697149 | None:intergenic | 25.0% |
| ! | TTATCATCTTTATCCAAGTT+AGG | - | chr1_3:57697335-57697354 | None:intergenic | 25.0% |
| !! | AATTCCTTTATTTGTCTCAA+TGG | + | chr1_3:57697468-57697487 | Msa0128040:intron | 25.0% |
| !! | ATTCCTTTATTTGTCTCAAT+GGG | + | chr1_3:57697469-57697488 | Msa0128040:intron | 25.0% |
| !! | GTTTTGCAAAGATATAGAAA+AGG | - | chr1_3:57697584-57697603 | None:intergenic | 25.0% |
| ! | GCTGTTAATGTTTATGAATT+GGG | + | chr1_3:57697700-57697719 | Msa0128040:intron | 25.0% |
| !! | CATATGAAAGTATGAAACAA+TGG | - | chr1_3:57697741-57697760 | None:intergenic | 25.0% |
| ! | TACTTTCATATGATTTGAAG+TGG | + | chr1_3:57697749-57697768 | Msa0128040:intron | 25.0% |
| !! | ACTTTCATATGATTTGAAGT+GGG | + | chr1_3:57697750-57697769 | Msa0128040:intron | 25.0% |
| ! | GGAAATTATCAACAAATGAA+GGG | - | chr1_3:57697908-57697927 | None:intergenic | 25.0% |
| ! | AGGAAATTATCAACAAATGA+AGG | - | chr1_3:57697909-57697928 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGATAATTTCCT+AGG | + | chr1_3:57697909-57697928 | Msa0128040:intron | 25.0% |
| ! | TAAAAATTAGACAACAACCT+AGG | - | chr1_3:57697929-57697948 | None:intergenic | 25.0% |
| ! | AAGATAGTTAAAATCAGCTT+CGG | - | chr1_3:57698121-57698140 | None:intergenic | 25.0% |
| !!! | TTTCATTCTAAAATCAGCTT+CGG | - | chr1_3:57698144-57698163 | None:intergenic | 25.0% |
| ! | TTTACCTAATTCTATATGGA+GGG | - | chr1_3:57698203-57698222 | None:intergenic | 25.0% |
| !!! | AAGTGGTATTTTTAAAACGT+TGG | - | chr1_3:57698407-57698426 | None:intergenic | 25.0% |
| !!! | TTTTAAAAATACCACTTTGC+TGG | + | chr1_3:57698410-57698429 | Msa0128040:intron | 25.0% |
| ! | TTTAAAAATACCACTTTGCT+GGG | + | chr1_3:57698411-57698430 | Msa0128040:intron | 25.0% |
| ! | TATGCTTAACATTCAATTCA+TGG | - | chr1_3:57698599-57698618 | None:intergenic | 25.0% |
| ! | TATAAATTATTGAAAGCAGC+AGG | - | chr1_3:57698702-57698721 | None:intergenic | 25.0% |
| !! | TTTATGGATCACTAAACTTT+TGG | - | chr1_3:57698777-57698796 | None:intergenic | 25.0% |
| ! | TCCAGAATAACTAAATGATA+GGG | - | chr1_3:57699267-57699286 | None:intergenic | 25.0% |
| ! | ATCCAGAATAACTAAATGAT+AGG | - | chr1_3:57699268-57699287 | None:intergenic | 25.0% |
| !! | TTTTTCCATTTTCTGCATAA+GGG | - | chr1_3:57699352-57699371 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATTTTCTGCATA+AGG | - | chr1_3:57699353-57699372 | None:intergenic | 25.0% |
| ! | TTATGCAGAAAATGGAAAAA+AGG | + | chr1_3:57699352-57699371 | Msa0128040:CDS | 25.0% |
| ! | TATGCAGAAAATGGAAAAAA+GGG | + | chr1_3:57699353-57699372 | Msa0128040:CDS | 25.0% |
| ! | GAACTCAGTTAATTCAAAAT+AGG | - | chr1_3:57699520-57699539 | None:intergenic | 25.0% |
| !! | TTTTGAATTAACTGAGTTCT+TGG | + | chr1_3:57699521-57699540 | Msa0128040:intron | 25.0% |
| !!! | CGGAGAAATATTTTTTATGA+AGG | - | chr1_3:57699772-57699791 | None:intergenic | 25.0% |
| ! | CTGTTTGATACACTATTTAA+AGG | - | chr1_3:57700341-57700360 | None:intergenic | 25.0% |
| ! | CATTTACGATTGTACTATAT+AGG | + | chr1_3:57700384-57700403 | Msa0128040:three_prime_UTR | 25.0% |
| ! | TTTGTTGATTGAACTTGAAG+TGG | + | chr1_3:57692991-57693010 | Msa0128040:five_prime_UTR | 30.0% |
| ! | CGAGTTTATATAAGTGGATT+TGG | - | chr1_3:57693093-57693112 | None:intergenic | 30.0% |
| TTCGTGTGAATAAACATCAT+AGG | - | chr1_3:57693237-57693256 | None:intergenic | 30.0% | |
| ! | TGAATTCATTTTCAGCATCA+GGG | - | chr1_3:57693403-57693422 | None:intergenic | 30.0% |
| ! | TTGAATTCATTTTCAGCATC+AGG | - | chr1_3:57693404-57693423 | None:intergenic | 30.0% |
| GATGCTGAAAATGAATTCAA+TGG | + | chr1_3:57693404-57693423 | Msa0128040:CDS | 30.0% | |
| CAAAGAAAGAAATACCTTCA+CGG | - | chr1_3:57693441-57693460 | None:intergenic | 30.0% | |
| GAAGCAGAAAGAAAATATCA+CGG | - | chr1_3:57693544-57693563 | None:intergenic | 30.0% | |
| AGCTCAATAAATCAAACTCA+TGG | - | chr1_3:57693643-57693662 | None:intergenic | 30.0% | |
| ! | ACCTATTTGATGACTAATCT+TGG | + | chr1_3:57693731-57693750 | Msa0128040:intron | 30.0% |
| ! | ACCAAGATTAGTCATCAAAT+AGG | - | chr1_3:57693735-57693754 | None:intergenic | 30.0% |
| ! | ATTTGATGACTAATCTTGGT+CGG | + | chr1_3:57693735-57693754 | Msa0128040:intron | 30.0% |
| TGAATATATAAAGAGGTGAC+CGG | + | chr1_3:57693924-57693943 | Msa0128040:intron | 30.0% | |
| TATCAACAACGGATATTACT+GGG | - | chr1_3:57694031-57694050 | None:intergenic | 30.0% | |
| TTATCAACAACGGATATTAC+TGG | - | chr1_3:57694032-57694051 | None:intergenic | 30.0% | |
| !! | CAATTTTGTTTCGTTCTACT+TGG | + | chr1_3:57694133-57694152 | Msa0128040:intron | 30.0% |
| GTTGCACTTATGTTTCAAAT+TGG | + | chr1_3:57694396-57694415 | Msa0128040:CDS | 30.0% | |
| CTTATGTTTCAAATTGGAGA+TGG | + | chr1_3:57694402-57694421 | Msa0128040:CDS | 30.0% | |
| GCAACTTACATTATGATAAG+AGG | - | chr1_3:57694430-57694449 | None:intergenic | 30.0% | |
| ACTCAACAATGTATTCTTTG+AGG | + | chr1_3:57694453-57694472 | Msa0128040:intron | 30.0% | |
| CTCAACAATGTATTCTTTGA+GGG | + | chr1_3:57694454-57694473 | Msa0128040:intron | 30.0% | |
| !!! | AAGGAGGATATTTTAGGTTT+TGG | - | chr1_3:57694651-57694670 | None:intergenic | 30.0% |
| ! | GTATTGAAGGAGGATATTTT+AGG | - | chr1_3:57694657-57694676 | None:intergenic | 30.0% |
| AACTCAAAATGTATTGAAGG+AGG | - | chr1_3:57694667-57694686 | None:intergenic | 30.0% | |
| !!! | ATTTTGAGTTCCCTCAAATT+AGG | + | chr1_3:57694677-57694696 | Msa0128040:intron | 30.0% |
| !!! | TTTTGAGTTCCCTCAAATTA+GGG | + | chr1_3:57694678-57694697 | Msa0128040:intron | 30.0% |
| !!! | AGTTTTTTGGGAATTTAGGA+GGG | - | chr1_3:57694798-57694817 | None:intergenic | 30.0% |
| !!! | AAGTTTTTTGGGAATTTAGG+AGG | - | chr1_3:57694799-57694818 | None:intergenic | 30.0% |
| !!! | ATGAAGCGATGAAGTTTTTT+GGG | - | chr1_3:57694810-57694829 | None:intergenic | 30.0% |
| GCATTTGGATAAACAACTTA+GGG | + | chr1_3:57694848-57694867 | Msa0128040:intron | 30.0% | |
| AATAAGCTAAAAACAACTGG+TGG | - | chr1_3:57694963-57694982 | None:intergenic | 30.0% | |
| GGAAATAAGCTAAAAACAAC+TGG | - | chr1_3:57694966-57694985 | None:intergenic | 30.0% | |
| AAGTTATCTTGAAGAGCTTA+TGG | - | chr1_3:57694987-57695006 | None:intergenic | 30.0% | |
| ! | TGATTACCATAAGCACTTTT+TGG | - | chr1_3:57695152-57695171 | None:intergenic | 30.0% |
| AAATTAAAATCAGTTAGGGG+TGG | + | chr1_3:57695443-57695462 | Msa0128040:intron | 30.0% | |
| AGAGATCTTTCATAAAGATC+AGG | - | chr1_3:57695675-57695694 | None:intergenic | 30.0% | |
| ! | GACATTATGCACTTTTCAAT+TGG | + | chr1_3:57695799-57695818 | Msa0128040:CDS | 30.0% |
| TTCAATTGGAAATGCTATTC+CGG | + | chr1_3:57695813-57695832 | Msa0128040:CDS | 30.0% | |
| TTTCCATCTCTATTGTCAAT+GGG | - | chr1_3:57695859-57695878 | None:intergenic | 30.0% | |
| ATTTCCATCTCTATTGTCAA+TGG | - | chr1_3:57695860-57695879 | None:intergenic | 30.0% | |
| ATTGACAATAGAGATGGAAA+TGG | + | chr1_3:57695859-57695878 | Msa0128040:CDS | 30.0% | |
| CTCCTTAACTTTAACCATAT+CGG | + | chr1_3:57695907-57695926 | Msa0128040:intron | 30.0% | |
| TTTCCTATAATCGTTCATAC+AGG | + | chr1_3:57695986-57696005 | Msa0128040:intron | 30.0% | |
| AAACCTGTATGAACGATTAT+AGG | - | chr1_3:57695992-57696011 | None:intergenic | 30.0% | |
| TATAATCGTTCATACAGGTT+TGG | + | chr1_3:57695991-57696010 | Msa0128040:intron | 30.0% | |
| !! | TATGCCTTTTATTTAAGGGT+TGG | + | chr1_3:57696376-57696395 | Msa0128040:intron | 30.0% |
| !!! | AACATTTTCAGGTGAGAAAT+GGG | - | chr1_3:57696433-57696452 | None:intergenic | 30.0% |
| !!! | AAACATTTTCAGGTGAGAAA+TGG | - | chr1_3:57696434-57696453 | None:intergenic | 30.0% |
| AGATCTAGCGATTAATTAGT+TGG | + | chr1_3:57696808-57696827 | Msa0128040:intron | 30.0% | |
| !!! | ATTGTTTTAAACCTTGCATG+AGG | + | chr1_3:57696958-57696977 | Msa0128040:intron | 30.0% |
| ! | AATTTTAAATTGGGTGTGTG+GGG | - | chr1_3:57697120-57697139 | None:intergenic | 30.0% |
| ! | CAAATTTTAAATTGGGTGTG+TGG | - | chr1_3:57697122-57697141 | None:intergenic | 30.0% |
| ! | TGCTTAATCATTTTGTGAAG+TGG | - | chr1_3:57697147-57697166 | None:intergenic | 30.0% |
| CAAAATGATTAAGCAGTGAT+TGG | + | chr1_3:57697152-57697171 | Msa0128040:intron | 30.0% | |
| ! | AATTAAGGCATCTGTATAGA+AGG | + | chr1_3:57697246-57697265 | Msa0128040:intron | 30.0% |
| ! | ATTAAGGCATCTGTATAGAA+GGG | + | chr1_3:57697247-57697266 | Msa0128040:intron | 30.0% |
| CAATTTATTAGTGCCTAACT+TGG | + | chr1_3:57697319-57697338 | Msa0128040:intron | 30.0% | |
| AGATTGACAAACACATTTGT+TGG | + | chr1_3:57697387-57697406 | Msa0128040:intron | 30.0% | |
| GATTGACAAACACATTTGTT+GGG | + | chr1_3:57697388-57697407 | Msa0128040:intron | 30.0% | |
| AATCCCATTGAGACAAATAA+AGG | - | chr1_3:57697475-57697494 | None:intergenic | 30.0% | |
| ATATAGAAAAGGACACAATC+TGG | - | chr1_3:57697573-57697592 | None:intergenic | 30.0% | |
| CGCTGTTAATGTTTATGAAT+TGG | + | chr1_3:57697699-57697718 | Msa0128040:intron | 30.0% | |
| ! | CTTTCATATGATTTGAAGTG+GGG | + | chr1_3:57697751-57697770 | Msa0128040:intron | 30.0% |
| TAGGGATATACATTAAGCAT+TGG | + | chr1_3:57697952-57697971 | Msa0128040:intron | 30.0% | |
| CATTAACTGAGAACAGAAAA+AGG | - | chr1_3:57697979-57697998 | None:intergenic | 30.0% | |
| TCGGAAGATAGTTAATTGAT+AGG | - | chr1_3:57698102-57698121 | None:intergenic | 30.0% | |
| AATTCTATATGGAGGGATTT+CGG | - | chr1_3:57698196-57698215 | None:intergenic | 30.0% | |
| AAATCCCTCCATATAGAATT+AGG | + | chr1_3:57698196-57698215 | Msa0128040:intron | 30.0% | |
| GTTTACCTAATTCTATATGG+AGG | - | chr1_3:57698204-57698223 | None:intergenic | 30.0% | |
| !!! | TGGTATTTTTAAAACGTTGG+TGG | - | chr1_3:57698404-57698423 | None:intergenic | 30.0% |
| TTAAAAATACCACTTTGCTG+GGG | + | chr1_3:57698412-57698431 | Msa0128040:intron | 30.0% | |
| ATTACATTAACCTACCTAGT+TGG | - | chr1_3:57698742-57698761 | None:intergenic | 30.0% | |
| TCCATCAAGGATGAAAAAAT+GGG | - | chr1_3:57698874-57698893 | None:intergenic | 30.0% | |
| ATCCATCAAGGATGAAAAAA+TGG | - | chr1_3:57698875-57698894 | None:intergenic | 30.0% | |
| TGTTTCAACGTATCTAATAC+TGG | + | chr1_3:57698909-57698928 | Msa0128040:intron | 30.0% | |
| GTTTCAACGTATCTAATACT+GGG | + | chr1_3:57698910-57698929 | Msa0128040:intron | 30.0% | |
| ! | TGTAAGAGAGCTCTAATTTA+GGG | + | chr1_3:57698984-57699003 | Msa0128040:intron | 30.0% |
| TATGTAGAGGACAAAAGTAA+GGG | + | chr1_3:57699119-57699138 | Msa0128040:intron | 30.0% | |
| ACCCTATCATTTAGTTATTC+TGG | + | chr1_3:57699263-57699282 | Msa0128040:intron | 30.0% | |
| !! | CTCTATAACAGGTTTTGTAA+AGG | + | chr1_3:57699319-57699338 | Msa0128040:intron | 30.0% |
| CTCTTCTAAATGCATCATAA+AGG | - | chr1_3:57699449-57699468 | None:intergenic | 30.0% | |
| AATAGGGATTCAAACATAAG+AGG | - | chr1_3:57699503-57699522 | None:intergenic | 30.0% | |
| AAATCCTTCTAGATAACTCA+TGG | + | chr1_3:57699550-57699569 | Msa0128040:intron | 30.0% | |
| !! | ATCATAATGAATTCTGGTTC+TGG | + | chr1_3:57699600-57699619 | Msa0128040:intron | 30.0% |
| TGTAGTTTAGTATGTGACTT+GGG | - | chr1_3:57699636-57699655 | None:intergenic | 30.0% | |
| TTGTAGTTTAGTATGTGACT+TGG | - | chr1_3:57699637-57699656 | None:intergenic | 30.0% | |
| !! | GCTATTTTGTCAAACAGTTT+TGG | + | chr1_3:57699685-57699704 | Msa0128040:intron | 30.0% |
| TTGGATAAGATATCTTCTAC+CGG | + | chr1_3:57699710-57699729 | Msa0128040:intron | 30.0% | |
| TTGCAATACCTTCTTTACAA+AGG | + | chr1_3:57699739-57699758 | Msa0128040:intron | 30.0% | |
| !!! | GTTTGGTTGTTTTAGCTATT+GGG | - | chr1_3:57699800-57699819 | None:intergenic | 30.0% |
| !!! | AGTTTGGTTGTTTTAGCTAT+TGG | - | chr1_3:57699801-57699820 | None:intergenic | 30.0% |
| !! | AACAACCAAACTTTAAAGTG+CGG | + | chr1_3:57699809-57699828 | Msa0128040:intron | 30.0% |
| !!! | TGCGGTCTTTTTTATTTTTG+TGG | + | chr1_3:57699827-57699846 | Msa0128040:intron | 30.0% |
| CATGCAAATTTATACCTTAC+AGG | + | chr1_3:57700020-57700039 | Msa0128040:intron | 30.0% | |
| ACTATTTAAAGGTTCTCCAT+TGG | - | chr1_3:57700330-57700349 | None:intergenic | 30.0% | |
| GTTCAATAGTCCAAGTATAA+TGG | + | chr1_3:57700505-57700524 | Msa0128040:three_prime_UTR | 30.0% | |
| TAGATCACAAATGGAATACG+TGG | + | chr1_3:57692831-57692850 | Msa0128040:five_prime_UTR | 35.0% | |
| AGATCACAAATGGAATACGT+GGG | + | chr1_3:57692832-57692851 | Msa0128040:five_prime_UTR | 35.0% | |
| ! | TTGTGTCTTGTTGCTAACTA+AGG | - | chr1_3:57692871-57692890 | None:intergenic | 35.0% |
| !! | AACAAGTGCTGGTGAAAAAA+AGG | + | chr1_3:57692921-57692940 | Msa0128040:five_prime_UTR | 35.0% |
| ATTTGATAGATCGCGATTTG+TGG | - | chr1_3:57693064-57693083 | None:intergenic | 35.0% | |
| TGTTTATTCACACGAAGAGT+CGG | + | chr1_3:57693241-57693260 | Msa0128040:CDS | 35.0% | |
| ! | AATAACACCGGGTTGAAATT+CGG | - | chr1_3:57693309-57693328 | None:intergenic | 35.0% |
| ACCATCAAGTGTAATAACAC+CGG | - | chr1_3:57693321-57693340 | None:intergenic | 35.0% | |
| ATCAATGTCCTTCCAATCAT+CGG | - | chr1_3:57693348-57693367 | None:intergenic | 35.0% | |
| ATGATTGGAAGGACATTGAT+GGG | + | chr1_3:57693348-57693367 | Msa0128040:CDS | 35.0% | |
| GCTGAAAATGAATTCAATGG+CGG | + | chr1_3:57693407-57693426 | Msa0128040:CDS | 35.0% | |
| !! | TTCTTTCTGCTTCAAGTTGA+TGG | + | chr1_3:57693551-57693570 | Msa0128040:CDS | 35.0% |
| GTGATTATGCCTACTCTAAT+GGG | + | chr1_3:57693573-57693592 | Msa0128040:CDS | 35.0% | |
| ! | TTTGATGACTAATCTTGGTC+GGG | + | chr1_3:57693736-57693755 | Msa0128040:intron | 35.0% |
| ATGGAAAAAACGTGGTTAAG+CGG | - | chr1_3:57693802-57693821 | None:intergenic | 35.0% | |
| ATTGAGACGCTTATCAACAA+CGG | - | chr1_3:57694042-57694061 | None:intergenic | 35.0% | |
| ACTCTTATATCCCATCATGT+TGG | - | chr1_3:57694261-57694280 | None:intergenic | 35.0% | |
| TGAAACATAAGTGCAACAGA+GGG | - | chr1_3:57694393-57694412 | None:intergenic | 35.0% | |
| TTGAAACATAAGTGCAACAG+AGG | - | chr1_3:57694394-57694413 | None:intergenic | 35.0% | |
| !!! | TTTTAGGTTTTGGAGGACTT+GGG | - | chr1_3:57694641-57694660 | None:intergenic | 35.0% |
| !!! | ATTTTAGGTTTTGGAGGACT+TGG | - | chr1_3:57694642-57694661 | None:intergenic | 35.0% |
| !!! | GAGGATATTTTAGGTTTTGG+AGG | - | chr1_3:57694648-57694667 | None:intergenic | 35.0% |
| GGGAACTCAAAATGTATTGA+AGG | - | chr1_3:57694670-57694689 | None:intergenic | 35.0% | |
| ! | TTTGAGTTCCCTCAAATTAG+GGG | + | chr1_3:57694679-57694698 | Msa0128040:intron | 35.0% |
| ACAAAATCCCCCTAATTTGA+GGG | - | chr1_3:57694690-57694709 | None:intergenic | 35.0% | |
| TACAAAATCCCCCTAATTTG+AGG | - | chr1_3:57694691-57694710 | None:intergenic | 35.0% | |
| TGTAAGGTATGAAGGGATTT+GGG | - | chr1_3:57694748-57694767 | None:intergenic | 35.0% | |
| ! | GAGAAAGTGTAAGGTATGAA+GGG | - | chr1_3:57694755-57694774 | None:intergenic | 35.0% |
| ! | AAAAGGAAGGAGAAAGTGTA+AGG | - | chr1_3:57694764-57694783 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGAATTTAGGAGG+GGG | - | chr1_3:57694796-57694815 | None:intergenic | 35.0% |
| !!! | GTTTTTTGGGAATTTAGGAG+GGG | - | chr1_3:57694797-57694816 | None:intergenic | 35.0% |
| !!! | CATGAAGCGATGAAGTTTTT+TGG | - | chr1_3:57694811-57694830 | None:intergenic | 35.0% |
| !! | TTTCAAATCTAAGGGGCATT+TGG | + | chr1_3:57694833-57694852 | Msa0128040:intron | 35.0% |
| GGCATTTGGATAAACAACTT+AGG | + | chr1_3:57694847-57694866 | Msa0128040:intron | 35.0% | |
| TGACTGTTTGAGAGAGTTTA+TGG | + | chr1_3:57694919-57694938 | Msa0128040:intron | 35.0% | |
| !! | ACACTTCCAAAAAGTGCTTA+TGG | + | chr1_3:57695143-57695162 | Msa0128040:intron | 35.0% |
| AGGTGTAAGAATGACATGTT+AGG | - | chr1_3:57695380-57695399 | None:intergenic | 35.0% | |
| !!! | ATGAGGTGTTGGGTTTTAAT+TGG | - | chr1_3:57695567-57695586 | None:intergenic | 35.0% |
| TGCTGATCAGTTAAAGAAAG+TGG | + | chr1_3:57695469-57695488 | Msa0128040:intron | 35.0% | |
| GCTGATCAGTTAAAGAAAGT+GGG | + | chr1_3:57695470-57695489 | Msa0128040:intron | 35.0% | |
| CTGATCAGTTAAAGAAAGTG+GGG | + | chr1_3:57695471-57695490 | Msa0128040:intron | 35.0% | |
| AAGAAGAGAGAGAAAACATC+AGG | + | chr1_3:57695495-57695514 | Msa0128040:intron | 35.0% | |
| !!! | ATGAGGTGTTGGGTTTTAAT+TGG | + | chr1_3:57695567-57695586 | Msa0128040:intron | 35.0% |
| CTTAATTGTTGTAAGATGGG+TGG | + | chr1_3:57695721-57695740 | Msa0128040:intron | 35.0% | |
| TCAATTGGAAATGCTATTCC+GGG | + | chr1_3:57695814-57695833 | Msa0128040:CDS | 35.0% | |
| AATCCCATTGACAATAGAGA+TGG | + | chr1_3:57695853-57695872 | Msa0128040:CDS | 35.0% | |
| AGCCGATATGGTTAAAGTTA+AGG | - | chr1_3:57695912-57695931 | None:intergenic | 35.0% | |
| TCATAAATTGTCAGCCGATA+TGG | - | chr1_3:57695924-57695943 | None:intergenic | 35.0% | |
| AGGCATAAAGATCAACCAAA+TGG | - | chr1_3:57696017-57696036 | None:intergenic | 35.0% | |
| ATTTGGTTGATCTTTATGCC+TGG | + | chr1_3:57696016-57696035 | Msa0128040:CDS | 35.0% | |
| AACGAGATTAAAACAGCAAG+TGG | + | chr1_3:57696153-57696172 | Msa0128040:intron | 35.0% | |
| TCATGAAGCAAACTACTTGA+TGG | - | chr1_3:57696221-57696240 | None:intergenic | 35.0% | |
| !! | AAGTAGTTTGCTTCATGACT+TGG | + | chr1_3:57696223-57696242 | Msa0128040:intron | 35.0% |
| TGCACCAACCCTTAAATAAA+AGG | - | chr1_3:57696383-57696402 | None:intergenic | 35.0% | |
| CGAGGTAGATAAGTGTTAAA+AGG | - | chr1_3:57696493-57696512 | None:intergenic | 35.0% | |
| TTAGAGATAGGATGTTGTGT+TGG | + | chr1_3:57696558-57696577 | Msa0128040:intron | 35.0% | |
| AAATGACAACCTTAGAGAGA+AGG | + | chr1_3:57696613-57696632 | Msa0128040:intron | 35.0% | |
| AGCACCTATCATAGAAAAGA+TGG | + | chr1_3:57696643-57696662 | Msa0128040:intron | 35.0% | |
| ACCTATCATAGAAAAGATGG+TGG | + | chr1_3:57696646-57696665 | Msa0128040:intron | 35.0% | |
| ! | TCCACCATCTTTTCTATGAT+AGG | - | chr1_3:57696650-57696669 | None:intergenic | 35.0% |
| !! | TAGAAAAGATGGTGGAAACT+CGG | + | chr1_3:57696654-57696673 | Msa0128040:intron | 35.0% |
| CTAATCTACTTTCCTCACTA+GGG | - | chr1_3:57696720-57696739 | None:intergenic | 35.0% | |
| TCTAATCTACTTTCCTCACT+AGG | - | chr1_3:57696721-57696740 | None:intergenic | 35.0% | |
| AGTGAGGAAAGTAGATTAGA+TGG | + | chr1_3:57696721-57696740 | Msa0128040:intron | 35.0% | |
| AGGAAAGTAGATTAGATGGA+GGG | + | chr1_3:57696725-57696744 | Msa0128040:intron | 35.0% | |
| ! | ATTTGATAGAACGTGTCGTT+TGG | + | chr1_3:57696844-57696863 | Msa0128040:intron | 35.0% |
| ATAATTGACATCCTCATGCA+AGG | - | chr1_3:57696972-57696991 | None:intergenic | 35.0% | |
| ATTTGACATGGCTAAGCTAA+AGG | - | chr1_3:57697001-57697020 | None:intergenic | 35.0% | |
| TAAGATTGCTTCTTCCACAT+TGG | + | chr1_3:57697208-57697227 | Msa0128040:intron | 35.0% | |
| ! | ATTCATCTTTTCCTCCAATG+TGG | - | chr1_3:57697225-57697244 | None:intergenic | 35.0% |
| ! | TTAAGGCATCTGTATAGAAG+GGG | + | chr1_3:57697248-57697267 | Msa0128040:intron | 35.0% |
| TATAGAAGGGGACAAATAGA+TGG | + | chr1_3:57697260-57697279 | Msa0128040:intron | 35.0% | |
| ACTTCTTATGTTGAGAATCC+TGG | - | chr1_3:57697422-57697441 | None:intergenic | 35.0% | |
| TTCTGTTTGTGGTCAAAATG+CGG | + | chr1_3:57697510-57697529 | Msa0128040:intron | 35.0% | |
| AATGTGAGACGTATCTTCTT+TGG | - | chr1_3:57697814-57697833 | None:intergenic | 35.0% | |
| TCACATTGCGACCATATAAT+TGG | + | chr1_3:57697827-57697846 | Msa0128040:intron | 35.0% | |
| TAAGCTATAACCCTACAATG+TGG | + | chr1_3:57697855-57697874 | Msa0128040:intron | 35.0% | |
| AAGCTATAACCCTACAATGT+GGG | + | chr1_3:57697856-57697875 | Msa0128040:intron | 35.0% | |
| GATGTTTAACCCACATTGTA+GGG | - | chr1_3:57697868-57697887 | None:intergenic | 35.0% | |
| AGATGTTTAACCCACATTGT+AGG | - | chr1_3:57697869-57697888 | None:intergenic | 35.0% | |
| !! | AATATTGGTTGGTAGTGTAG+TGG | + | chr1_3:57698162-57698181 | Msa0128040:intron | 35.0% |
| ATTCTATATGGAGGGATTTC+GGG | - | chr1_3:57698195-57698214 | None:intergenic | 35.0% | |
| !!! | GTGGAAGATGTTTGTTTTTG+CGG | + | chr1_3:57698434-57698453 | Msa0128040:intron | 35.0% |
| !!! | TGGAAGATGTTTGTTTTTGC+GGG | + | chr1_3:57698435-57698454 | Msa0128040:intron | 35.0% |
| CTGAGGACATAAATGATGTA+TGG | - | chr1_3:57698642-57698661 | None:intergenic | 35.0% | |
| CATACATCATTTATGTCCTC+AGG | + | chr1_3:57698640-57698659 | Msa0128040:intron | 35.0% | |
| ! | TAATTAGTGCTGTTCCAACT+AGG | + | chr1_3:57698725-57698744 | Msa0128040:intron | 35.0% |
| ! | CTAAACTTTTGGCACTTAGT+GGG | - | chr1_3:57698766-57698785 | None:intergenic | 35.0% |
| ! | ACTAAACTTTTGGCACTTAG+TGG | - | chr1_3:57698767-57698786 | None:intergenic | 35.0% |
| ! | ATCCATAAAAGAAGCATGAC+TGG | + | chr1_3:57698788-57698807 | Msa0128040:intron | 35.0% |
| ! | AACCAGTCATGCTTCTTTTA+TGG | - | chr1_3:57698793-57698812 | None:intergenic | 35.0% |
| !! | CATGACTGGTTTGTTTCTTA+TGG | + | chr1_3:57698802-57698821 | Msa0128040:intron | 35.0% |
| !!! | ACCCATTTTTTCATCCTTGA+TGG | + | chr1_3:57698870-57698889 | Msa0128040:intron | 35.0% |
| ! | TAACTTTTACTCGACTCCAA+TGG | + | chr1_3:57698934-57698953 | Msa0128040:intron | 35.0% |
| ! | GTGTAAGAGAGCTCTAATTT+AGG | + | chr1_3:57698983-57699002 | Msa0128040:intron | 35.0% |
| TTGACGATACATGTATGTAG+AGG | + | chr1_3:57699106-57699125 | Msa0128040:intron | 35.0% | |
| GTATGTAGAGGACAAAAGTA+AGG | + | chr1_3:57699118-57699137 | Msa0128040:intron | 35.0% | |
| CTCACATGATTCTCTATAAC+AGG | + | chr1_3:57699308-57699327 | Msa0128040:intron | 35.0% | |
| TAGTCCATGAGTTATCTAGA+AGG | - | chr1_3:57699557-57699576 | None:intergenic | 35.0% | |
| GTAGTTTAGTATGTGACTTG+GGG | - | chr1_3:57699635-57699654 | None:intergenic | 35.0% | |
| !!! | TTGTCAAACAGTTTTGGCTT+TGG | + | chr1_3:57699691-57699710 | Msa0128040:intron | 35.0% |
| !! | GAAGGTATTGCAAAACAAAC+CGG | - | chr1_3:57699732-57699751 | None:intergenic | 35.0% |
| GCAAGTTTCCTTTGTAAAGA+AGG | - | chr1_3:57699750-57699769 | None:intergenic | 35.0% | |
| !! | AAAGACCGCACTTTAAAGTT+TGG | - | chr1_3:57699817-57699836 | None:intergenic | 35.0% |
| ! | TTTTGTGGATGTAGTTGAAG+TGG | + | chr1_3:57699842-57699861 | Msa0128040:intron | 35.0% |
| ! | AACACGCATGAATGTCATTT+AGG | + | chr1_3:57699977-57699996 | Msa0128040:intron | 35.0% |
| ACTACTCTGTTAACTGTGAT+TGG | + | chr1_3:57700130-57700149 | Msa0128040:CDS | 35.0% | |
| CTACTCTGTTAACTGTGATT+GGG | + | chr1_3:57700131-57700150 | Msa0128040:CDS | 35.0% | |
| TGTCTGTGTTTGTGAGTTAT+CGG | + | chr1_3:57700274-57700293 | Msa0128040:CDS | 35.0% | |
| TGTATCAAACAGCTTGAGTT+TGG | + | chr1_3:57700349-57700368 | Msa0128040:three_prime_UTR | 35.0% | |
| GTATCAAACAGCTTGAGTTT+GGG | + | chr1_3:57700350-57700369 | Msa0128040:three_prime_UTR | 35.0% | |
| AGATGGAACTCCATTATACT+TGG | - | chr1_3:57700518-57700537 | None:intergenic | 35.0% | |
| TTATGATGCATGAAGTGGCA+AGG | + | chr1_3:57692808-57692827 | Msa0128040:five_prime_UTR | 40.0% | |
| GATCACAAATGGAATACGTG+GGG | + | chr1_3:57692833-57692852 | Msa0128040:five_prime_UTR | 40.0% | |
| AAGGAAAATGCAACAAGTGC+TGG | + | chr1_3:57692910-57692929 | Msa0128040:five_prime_UTR | 40.0% | |
| GTTGATTGAACTTGAAGTGG+TGG | + | chr1_3:57692994-57693013 | Msa0128040:five_prime_UTR | 40.0% | |
| GTTTATTCACACGAAGAGTC+GGG | + | chr1_3:57693242-57693261 | Msa0128040:CDS | 40.0% | |
| CCATCAAGTGTAATAACACC+GGG | - | chr1_3:57693320-57693339 | None:intergenic | 40.0% | |
| GATGATTGGAAGGACATTGA+TGG | + | chr1_3:57693347-57693366 | Msa0128040:CDS | 40.0% | |
| AGCAAGAAGAAGAGAGAAGT+GGG | - | chr1_3:57693375-57693394 | None:intergenic | 40.0% | |
| GGTGATTATGCCTACTCTAA+TGG | + | chr1_3:57693572-57693591 | Msa0128040:CDS | 40.0% | |
| CACATCTTACCCATTAGAGT+AGG | - | chr1_3:57693585-57693604 | None:intergenic | 40.0% | |
| ! | TTGATGACTAATCTTGGTCG+GGG | + | chr1_3:57693737-57693756 | Msa0128040:intron | 40.0% |
| TGGAAAAAACGTGGTTAAGC+GGG | - | chr1_3:57693801-57693820 | None:intergenic | 40.0% | |
| ACTTGTGGATGGAAAAAACG+TGG | - | chr1_3:57693810-57693829 | None:intergenic | 40.0% | |
| !!! | GAACTCGAGACCTTGTTTTA+GGG | + | chr1_3:57693833-57693852 | Msa0128040:intron | 40.0% |
| CTCAAACTTGATCCCAGTAT+TGG | - | chr1_3:57693867-57693886 | None:intergenic | 40.0% | |
| ATACTGGGATCAAGTTTGAG+TGG | + | chr1_3:57693867-57693886 | Msa0128040:intron | 40.0% | |
| TTATTGAGGGTCCAACATGA+TGG | + | chr1_3:57694247-57694266 | Msa0128040:intron | 40.0% | |
| TATTGAGGGTCCAACATGAT+GGG | + | chr1_3:57694248-57694267 | Msa0128040:intron | 40.0% | |
| TATTTGCGAGTTTGGATGGT+AGG | + | chr1_3:57694479-57694498 | Msa0128040:intron | 40.0% | |
| ATTTGCGAGTTTGGATGGTA+GGG | + | chr1_3:57694480-57694499 | Msa0128040:intron | 40.0% | |
| TTGAGTTCCCTCAAATTAGG+GGG | + | chr1_3:57694680-57694699 | Msa0128040:intron | 40.0% | |
| GTGTAAGGTATGAAGGGATT+TGG | - | chr1_3:57694749-57694768 | None:intergenic | 40.0% | |
| ! | GGAGAAAGTGTAAGGTATGA+AGG | - | chr1_3:57694756-57694775 | None:intergenic | 40.0% |
| GGGGAATTTGAGAAAAAGGA+AGG | - | chr1_3:57694777-57694796 | None:intergenic | 40.0% | |
| TAAACAACTTAGGGCCTGTT+TGG | + | chr1_3:57694857-57694876 | Msa0128040:intron | 40.0% | |
| TCATATACGTCCATCCAAAC+AGG | - | chr1_3:57694874-57694893 | None:intergenic | 40.0% | |
| !!! | GTGTTGGGTTTTAATTGGCT+AGG | - | chr1_3:57695572-57695591 | None:intergenic | 40.0% |
| TTAAAATCAGTTAGGGGTGG+TGG | + | chr1_3:57695446-57695465 | Msa0128040:intron | 40.0% | |
| !!! | GTGTTGGGTTTTAATTGGCT+GGG | + | chr1_3:57695572-57695591 | Msa0128040:intron | 40.0% |
| TGCACAAATAAGACCTGCAA+AGG | + | chr1_3:57695766-57695785 | Msa0128040:CDS | 40.0% | |
| GACAATAGAGATGGAAATGG+CGG | + | chr1_3:57695862-57695881 | Msa0128040:CDS | 40.0% | |
| !!! | GAGCTATTTTTCATGAGACG+TGG | + | chr1_3:57695955-57695974 | Msa0128040:intron | 40.0% |
| TTCATACAGGTTTGGCCATT+TGG | + | chr1_3:57695999-57696018 | Msa0128040:intron | 40.0% | |
| GTCTGTAGCAATAGTGAATC+CGG | + | chr1_3:57696300-57696319 | Msa0128040:intron | 40.0% | |
| GAGTGAAGTCATTCAAGCAA+TGG | - | chr1_3:57696326-57696345 | None:intergenic | 40.0% | |
| ACAACCTTAGAGAGAAGGTT+GGG | + | chr1_3:57696618-57696637 | Msa0128040:intron | 40.0% | |
| CACTTATAGATTCCCTAGTG+AGG | + | chr1_3:57696705-57696724 | Msa0128040:intron | 40.0% | |
| GAGGAAAGTAGATTAGATGG+AGG | + | chr1_3:57696724-57696743 | Msa0128040:intron | 40.0% | |
| GAGGGTAGTCAAATCATTAG+AGG | + | chr1_3:57696743-57696762 | Msa0128040:intron | 40.0% | |
| ! | AAGCATTTTCCCACTAAGTG+GGG | - | chr1_3:57696883-57696902 | None:intergenic | 40.0% |
| ! | CAAGCATTTTCCCACTAAGT+GGG | - | chr1_3:57696884-57696903 | None:intergenic | 40.0% |
| AGCTTAGCCATGTCAAATCA+AGG | + | chr1_3:57697003-57697022 | Msa0128040:intron | 40.0% | |
| ! | ACGCAAACCTTGATTTGACA+TGG | - | chr1_3:57697013-57697032 | None:intergenic | 40.0% |
| ! | ATGTTGAGAATCCTGGTTTG+TGG | - | chr1_3:57697415-57697434 | None:intergenic | 40.0% |
| CAATCACTTCGTTCTGTTTG+TGG | + | chr1_3:57697499-57697518 | Msa0128040:intron | 40.0% | |
| !! | CAATCTGGTTTGGCATAATG+AGG | - | chr1_3:57697558-57697577 | None:intergenic | 40.0% |
| GAAAAGGACACAATCTGGTT+TGG | - | chr1_3:57697568-57697587 | None:intergenic | 40.0% | |
| !!! | GGAAGATGTTTGTTTTTGCG+GGG | + | chr1_3:57698436-57698455 | Msa0128040:intron | 40.0% |
| GAGAGACTCAATATCCATCA+AGG | - | chr1_3:57698887-57698906 | None:intergenic | 40.0% | |
| TTTACTCGACTCCAATGGAA+TGG | + | chr1_3:57698939-57698958 | Msa0128040:intron | 40.0% | |
| TTACTCGACTCCAATGGAAT+GGG | + | chr1_3:57698940-57698959 | Msa0128040:intron | 40.0% | |
| ATGCAGAAAGCTCGCATTTA+AGG | - | chr1_3:57699237-57699256 | None:intergenic | 40.0% | |
| GAGAACCCTTATGCAGAAAA+TGG | + | chr1_3:57699344-57699363 | Msa0128040:CDS | 40.0% | |
| TTGAATTCTCTAGGCCTTTG+AGG | + | chr1_3:57699387-57699406 | Msa0128040:CDS | 40.0% | |
| AGATGATCCATAGTCCTCAA+AGG | - | chr1_3:57699404-57699423 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTAGCTATTGGGCA+TGG | - | chr1_3:57699795-57699814 | None:intergenic | 40.0% |
| ACAGTTAACAGAGTAGTGTC+CGG | - | chr1_3:57700127-57700146 | None:intergenic | 40.0% | |
| GTCTGTGTTTGTGAGTTATC+GGG | + | chr1_3:57700275-57700294 | Msa0128040:CDS | 40.0% | |
| AAGGTTCTCCATTGGAGTAA+AGG | - | chr1_3:57700322-57700341 | None:intergenic | 40.0% | |
| TGCAACAACTAAGCACAAGA+TGG | - | chr1_3:57700535-57700554 | None:intergenic | 40.0% | |
| AACGTGCAATTTCCTTTCAC+AGG | + | chr1_3:57700554-57700573 | Msa0128040:three_prime_UTR | 40.0% | |
| ACGTGCAATTTCCTTTCACA+GGG | + | chr1_3:57700555-57700574 | Msa0128040:three_prime_UTR | 40.0% | |
| GTGGCAAGGTAGATCACAAA+TGG | + | chr1_3:57692822-57692841 | Msa0128040:five_prime_UTR | 45.0% | |
| ! | GTGCTTGACTTTTCTGAGCT+TGG | - | chr1_3:57693040-57693059 | None:intergenic | 45.0% |
| CTCAACATGAATCTCTGACC+CGG | - | chr1_3:57693285-57693304 | None:intergenic | 45.0% | |
| GTTGAGTCCGAATTTCAACC+CGG | + | chr1_3:57693299-57693318 | Msa0128040:CDS | 45.0% | |
| !! | CCCGGTGTTATTACACTTGA+TGG | + | chr1_3:57693317-57693336 | Msa0128040:CDS | 45.0% |
| ! | TTGATGGTCATGCCGATGAT+TGG | + | chr1_3:57693333-57693352 | Msa0128040:CDS | 45.0% |
| GAGCAAGAAGAAGAGAGAAG+TGG | - | chr1_3:57693376-57693395 | None:intergenic | 45.0% | |
| TTGTTGCAGAGTGTGCATGA+TGG | + | chr1_3:57693518-57693537 | Msa0128040:intron | 45.0% | |
| GGAAAAAACGTGGTTAAGCG+GGG | - | chr1_3:57693800-57693819 | None:intergenic | 45.0% | |
| !!! | CGAACTCGAGACCTTGTTTT+AGG | + | chr1_3:57693832-57693851 | Msa0128040:intron | 45.0% |
| ! | CTTGATCCCAGTATTGGACT+CGG | - | chr1_3:57693861-57693880 | None:intergenic | 45.0% |
| GAGGTGACCGGTATATTTAG+TGG | + | chr1_3:57693936-57693955 | Msa0128040:intron | 45.0% | |
| AATGCTCCAAAACCACAGGA+AGG | - | chr1_3:57693990-57694009 | None:intergenic | 45.0% | |
| GGTTAATGCTCCAAAACCAC+AGG | - | chr1_3:57693994-57694013 | None:intergenic | 45.0% | |
| CAACGGATATTACTGGGAGT+CGG | - | chr1_3:57694025-57694044 | None:intergenic | 45.0% | |
| TGAGGGTCTATTTGCGAGTT+TGG | + | chr1_3:57694471-57694490 | Msa0128040:intron | 45.0% | |
| GGTCTATTTGCGAGTTTGGA+TGG | + | chr1_3:57694475-57694494 | Msa0128040:intron | 45.0% | |
| TTTGCGAGTTTGGATGGTAG+GGG | + | chr1_3:57694481-57694500 | Msa0128040:intron | 45.0% | |
| AGGTATGAAGGGATTTGGGA+GGG | - | chr1_3:57694744-57694763 | None:intergenic | 45.0% | |
| AAGGTATGAAGGGATTTGGG+AGG | - | chr1_3:57694745-57694764 | None:intergenic | 45.0% | |
| GGAGGGGGAATTTGAGAAAA+AGG | - | chr1_3:57694781-57694800 | None:intergenic | 45.0% | |
| !!! | GGTGTTGGGTTTTAATTGGC+TGG | + | chr1_3:57695571-57695590 | Msa0128040:intron | 45.0% |
| GGGTGTAAGAATGACGTGTT+AGG | + | chr1_3:57695592-57695611 | Msa0128040:intron | 45.0% | |
| GTCAACTTCATGACCTTTGC+AGG | - | chr1_3:57695782-57695801 | None:intergenic | 45.0% | |
| TTGGAAATGCTATTCCGGGA+CGG | + | chr1_3:57695818-57695837 | Msa0128040:CDS | 45.0% | |
| GAATCCACACTGCAGATACT+TGG | + | chr1_3:57696038-57696057 | Msa0128040:CDS | 45.0% | |
| TTGTGCATACCAGAACCTGA+AGG | - | chr1_3:57696075-57696094 | None:intergenic | 45.0% | |
| GAAGTCATTCAAGCAATGGC+CGG | - | chr1_3:57696322-57696341 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | + | chr1_3:57696566-57696585 | Msa0128040:intron | 45.0% | |
| GACAACCTTAGAGAGAAGGT+TGG | + | chr1_3:57696617-57696636 | Msa0128040:intron | 45.0% | |
| CAACCTTAGAGAGAAGGTTG+GGG | + | chr1_3:57696619-57696638 | Msa0128040:intron | 45.0% | |
| AAACTCGGCTTAGGTGGTTT+GGG | + | chr1_3:57696669-57696688 | Msa0128040:intron | 45.0% | |
| ! | ATTTTCCCACTAAGTGGGGT+CGG | - | chr1_3:57696879-57696898 | None:intergenic | 45.0% |
| ! | CCAAGCATTTTCCCACTAAG+TGG | - | chr1_3:57696885-57696904 | None:intergenic | 45.0% |
| CCACTTAGTGGGAAAATGCT+TGG | + | chr1_3:57696882-57696901 | Msa0128040:intron | 45.0% | |
| GATTGCTTCTTCCACATTGG+AGG | + | chr1_3:57697211-57697230 | Msa0128040:intron | 45.0% | |
| AGAAGGGGACAAATAGATGG+AGG | + | chr1_3:57697263-57697282 | Msa0128040:intron | 45.0% | |
| GAAGGGGACAAATAGATGGA+GGG | + | chr1_3:57697264-57697283 | Msa0128040:intron | 45.0% | |
| ! | ATTTGTTGGGACCACAAACC+AGG | + | chr1_3:57697401-57697420 | Msa0128040:intron | 45.0% |
| GCGGCATTTCTGCACAAAAT+AGG | + | chr1_3:57697529-57697548 | Msa0128040:intron | 45.0% | |
| ATTCTAGTGCACAGAACGAC+TGG | + | chr1_3:57697999-57698018 | Msa0128040:intron | 45.0% | |
| AGCAGCTTTACAGTTCACTC+AGG | + | chr1_3:57698040-57698059 | Msa0128040:intron | 45.0% | |
| AAAATACCACTTTGCTGGGG+TGG | + | chr1_3:57698415-57698434 | Msa0128040:intron | 45.0% | |
| !!! | AGATGTTTGTTTTTGCGGGG+TGG | + | chr1_3:57698439-57698458 | Msa0128040:intron | 45.0% |
| !!! | GATGTTTGTTTTTGCGGGGT+GGG | + | chr1_3:57698440-57698459 | Msa0128040:intron | 45.0% |
| ! | TAGTGCTGTTCCAACTAGGT+AGG | + | chr1_3:57698729-57698748 | Msa0128040:intron | 45.0% |
| TACTCGACTCCAATGGAATG+GGG | + | chr1_3:57698941-57698960 | Msa0128040:intron | 45.0% | |
| AGCTCATTTCCCCATTCCAT+TGG | - | chr1_3:57698953-57698972 | None:intergenic | 45.0% | |
| !! | CATTTAAGGTGCTGCGACTA+AGG | - | chr1_3:57699223-57699242 | None:intergenic | 45.0% |
| GACTATGGATCATCTGCAAC+AGG | + | chr1_3:57699409-57699428 | Msa0128040:CDS | 45.0% | |
| !!! | GTTTTAGCTATTGGGCATGG+CGG | - | chr1_3:57699792-57699811 | None:intergenic | 45.0% |
| TGTGGATGTAGTTGAAGTGG+AGG | + | chr1_3:57699845-57699864 | Msa0128040:intron | 45.0% | |
| GTGGATGTAGTTGAAGTGGA+GGG | + | chr1_3:57699846-57699865 | Msa0128040:intron | 45.0% | |
| TGCGTGTTTGCATCATGTGT+TGG | - | chr1_3:57699965-57699984 | None:intergenic | 45.0% | |
| GGTGAATTGCACATCCTGTA+AGG | - | chr1_3:57700037-57700056 | None:intergenic | 45.0% | |
| CAGGATGTGCAATTCACCAT+TGG | + | chr1_3:57700039-57700058 | Msa0128040:intron | 45.0% | |
| GATGTGCAATTCACCATTGG+CGG | + | chr1_3:57700042-57700061 | Msa0128040:CDS | 45.0% | |
| GGATCAAGCAAGATGTCTGT+CGG | + | chr1_3:57700063-57700082 | Msa0128040:CDS | 45.0% | |
| GGATTCTGGTATCCAGTAGA+TGG | + | chr1_3:57700084-57700103 | Msa0128040:CDS | 45.0% | |
| ATCCAGTAGATGGTAAGCCA+TGG | + | chr1_3:57700094-57700113 | Msa0128040:CDS | 45.0% | |
| TCTCAGAGCAGTTCATTGAG+TGG | + | chr1_3:57700168-57700187 | Msa0128040:CDS | 45.0% | |
| TTCATTGAGTGGCAAGTCAG+TGG | + | chr1_3:57700179-57700198 | Msa0128040:CDS | 45.0% | |
| ACTCAGCATCAAGTAGCTCA+TGG | + | chr1_3:57700202-57700221 | Msa0128040:CDS | 45.0% | |
| GGAGTAAAGGCTACACTCTT+GGG | - | chr1_3:57700309-57700328 | None:intergenic | 45.0% | |
| TGGAGTAAAGGCTACACTCT+TGG | - | chr1_3:57700310-57700329 | None:intergenic | 45.0% | |
| GAGTGTAGCCTTTACTCCAA+TGG | + | chr1_3:57700311-57700330 | Msa0128040:CDS | 45.0% | |
| CGTGCAATTTCCTTTCACAG+GGG | + | chr1_3:57700556-57700575 | Msa0128040:three_prime_UTR | 45.0% | |
| GTGCAATTTCCTTTCACAGG+GGG | + | chr1_3:57700557-57700576 | Msa0128040:three_prime_UTR | 45.0% | |
| GAAAAATAGCCCCCTGTGAA+AGG | - | chr1_3:57700569-57700588 | None:intergenic | 45.0% | |
| !!! | TTTTTTTAATTATTTTAATG+AGG | + | chr1_3:57695550-57695569 | Msa0128040:intron | 5.0% |
| !! | TTATATGATTAAAATAAAAA+AGG | + | chr1_3:57696124-57696143 | Msa0128040:intron | 5.0% |
| !!! | TTTTCTAAAATAATTATAAA+AGG | - | chr1_3:57698850-57698869 | None:intergenic | 5.0% |
| TGGTCATGCCGATGATTGGA+AGG | + | chr1_3:57693337-57693356 | Msa0128040:CDS | 50.0% | |
| TGGCGGAAAAATGACCGTGA+AGG | + | chr1_3:57693424-57693443 | Msa0128040:CDS | 50.0% | |
| TCGAGTTCGAGACTTGTGGA+TGG | - | chr1_3:57693821-57693840 | None:intergenic | 50.0% | |
| GGACTCGGATCCCTAAAACA+AGG | - | chr1_3:57693846-57693865 | None:intergenic | 50.0% | |
| TAGGGATCCGAGTCCAATAC+TGG | + | chr1_3:57693851-57693870 | Msa0128040:intron | 50.0% | |
| AGGGATCCGAGTCCAATACT+GGG | + | chr1_3:57693852-57693871 | Msa0128040:intron | 50.0% | |
| ! | TTGCGTCCTTCCTGTGGTTT+TGG | + | chr1_3:57693981-57694000 | Msa0128040:intron | 50.0% |
| TTACTGGGAGTCGGTAGCAA+CGG | - | chr1_3:57694016-57694035 | None:intergenic | 50.0% | |
| ATTTGGGAGGGGAGAGCTTT+CGG | - | chr1_3:57694732-57694751 | None:intergenic | 50.0% | |
| GGTATGAAGGGATTTGGGAG+GGG | - | chr1_3:57694743-57694762 | None:intergenic | 50.0% | |
| CAACTTAGGGCCTGTTTGGA+TGG | + | chr1_3:57694861-57694880 | Msa0128040:intron | 50.0% | |
| TTGTAAGATGGGTGGCTGTG+AGG | + | chr1_3:57695729-57695748 | Msa0128040:intron | 50.0% | |
| !! | GCAGGTCTTATTTGTGCACG+AGG | - | chr1_3:57695764-57695783 | None:intergenic | 50.0% |
| GTATCTGCAGTGTGGATTCC+AGG | - | chr1_3:57696037-57696056 | None:intergenic | 50.0% | |
| CCATCCAAGTATCTGCAGTG+TGG | - | chr1_3:57696045-57696064 | None:intergenic | 50.0% | |
| CCACACTGCAGATACTTGGA+TGG | + | chr1_3:57696042-57696061 | Msa0128040:CDS | 50.0% | |
| TGCAGATACTTGGATGGCAC+TGG | + | chr1_3:57696048-57696067 | Msa0128040:CDS | 50.0% | |
| !! | CAGCAAGTGGAAGTATCAGC+AGG | + | chr1_3:57696166-57696185 | Msa0128040:intron | 50.0% |
| CTACCCCAACCTTCTCTCTA+AGG | - | chr1_3:57696625-57696644 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAAACTCGGCTT+AGG | + | chr1_3:57696660-57696679 | Msa0128040:intron | 50.0% |
| GAAACTCGGCTTAGGTGGTT+TGG | + | chr1_3:57696668-57696687 | Msa0128040:intron | 50.0% | |
| AGTGCACAGAACGACTGGAA+AGG | + | chr1_3:57698004-57698023 | Msa0128040:intron | 50.0% | |
| !! | AGAACGACTGGAAAGGTGCT+TGG | + | chr1_3:57698011-57698030 | Msa0128040:intron | 50.0% |
| TGCTGCTGACATGTTTCCTG+AGG | - | chr1_3:57698659-57698678 | None:intergenic | 50.0% | |
| ! | CTCTAGGCCTTTGAGGACTA+TGG | + | chr1_3:57699394-57699413 | Msa0128040:CDS | 50.0% |
| CATCTTGCTTGATCCGCCAA+TGG | - | chr1_3:57700058-57700077 | None:intergenic | 50.0% | |
| GCAAGATGTCTGTCGGATTC+TGG | + | chr1_3:57700070-57700089 | Msa0128040:CDS | 50.0% | |
| TGCCATGGCTTACCATCTAC+TGG | - | chr1_3:57700099-57700118 | None:intergenic | 50.0% | |
| GTAGATGGTAAGCCATGGCA+CGG | + | chr1_3:57700099-57700118 | Msa0128040:CDS | 50.0% | |
| GGTCCATGGAGCTGTGAAAC+CGG | + | chr1_3:57693263-57693282 | Msa0128040:CDS | 55.0% | |
| GTCCATGGAGCTGTGAAACC+GGG | + | chr1_3:57693264-57693283 | Msa0128040:CDS | 55.0% | |
| TGGTCGGGGAAACTCCTTAC+TGG | + | chr1_3:57693751-57693770 | Msa0128040:intron | 55.0% | |
| GGTCGGGGAAACTCCTTACT+GGG | + | chr1_3:57693752-57693771 | Msa0128040:intron | 55.0% | |
| AAGCGGGGAGACCTCATGAA+AGG | - | chr1_3:57693785-57693804 | None:intergenic | 55.0% | |
| GGTCTCGAGTTCGAGACTTG+TGG | - | chr1_3:57693825-57693844 | None:intergenic | 55.0% | |
| GAGATGTTGCGTCCTTCCTG+TGG | + | chr1_3:57693975-57693994 | Msa0128040:intron | 55.0% | |
| TACTGGGAGTCGGTAGCAAC+GGG | - | chr1_3:57694015-57694034 | None:intergenic | 55.0% | |
| TTTGGATGGTAGGGGACGAG+AGG | + | chr1_3:57694489-57694508 | Msa0128040:intron | 55.0% | |
| TTGGATGGTAGGGGACGAGA+GGG | + | chr1_3:57694490-57694509 | Msa0128040:intron | 55.0% | |
| ! | GTAGGGGACGAGAGGGTTTT+GGG | + | chr1_3:57694497-57694516 | Msa0128040:intron | 55.0% |
| !!! | ACGAGAGGGTTTTGGGTGGA+GGG | + | chr1_3:57694504-57694523 | Msa0128040:intron | 55.0% |
| TTTGGGAGGGGAGAGCTTTC+GGG | - | chr1_3:57694731-57694750 | None:intergenic | 55.0% | |
| GCTATTCCGGGACGGCTTTA+TGG | + | chr1_3:57695826-57695845 | Msa0128040:CDS | 55.0% | |
| ! | ATTCCGGGACGGCTTTATGG+CGG | + | chr1_3:57695829-57695848 | Msa0128040:CDS | 55.0% |
| GAGATGGAAATGGCGGTGAC+AGG | + | chr1_3:57695869-57695888 | Msa0128040:CDS | 55.0% | |
| !! | TTGGATGGCACTGGTCCTTC+AGG | + | chr1_3:57696057-57696076 | Msa0128040:CDS | 55.0% |
| TGGTGGAAACTCGGCTTAGG+TGG | + | chr1_3:57696663-57696682 | Msa0128040:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_3:57696870-57696889 | Msa0128040:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_3:57696871-57696890 | Msa0128040:intron | 55.0% | |
| !! | ACGACTGGAAAGGTGCTTGG+TGG | + | chr1_3:57698014-57698033 | Msa0128040:intron | 55.0% |
| CATCTTCCACCCCAGCAAAG+TGG | - | chr1_3:57698424-57698443 | None:intergenic | 55.0% | |
| CACACGAAGAGTCGGGTCCA+TGG | + | chr1_3:57693249-57693268 | Msa0128040:CDS | 60.0% | |
| GACCCGGTTTCACAGCTCCA+TGG | - | chr1_3:57693269-57693288 | None:intergenic | 60.0% | |
| GGGGAAACTCCTTACTGGGC+TGG | + | chr1_3:57693756-57693775 | Msa0128040:intron | 60.0% | |
| GAAAGGTGGCCAGCCCAGTA+AGG | - | chr1_3:57693768-57693787 | None:intergenic | 60.0% | |
| !! | TGGGCTGGCCACCTTTCATG+AGG | + | chr1_3:57693771-57693790 | Msa0128040:intron | 60.0% |
| CGGGGAGACCTCATGAAAGG+TGG | - | chr1_3:57693782-57693801 | None:intergenic | 60.0% | |
| ! | GGTAGGGGACGAGAGGGTTT+TGG | + | chr1_3:57694496-57694515 | Msa0128040:intron | 60.0% |
| !!! | GACGAGAGGGTTTTGGGTGG+AGG | + | chr1_3:57694503-57694522 | Msa0128040:intron | 60.0% |
| !!! | CGAGAGGGTTTTGGGTGGAG+GGG | + | chr1_3:57694505-57694524 | Msa0128040:intron | 60.0% |
| ! | TTCCGGGACGGCTTTATGGC+GGG | + | chr1_3:57695830-57695849 | Msa0128040:CDS | 60.0% |
| TTCCCGCCATAAAGCCGTCC+CGG | - | chr1_3:57695835-57695854 | None:intergenic | 60.0% | |
| !! | GGCACTGGTCCTTCAGGTTC+TGG | + | chr1_3:57696063-57696082 | Msa0128040:CDS | 60.0% |
| GGTAAGCCATGGCACGGTTC+CGG | + | chr1_3:57700105-57700124 | Msa0128040:CDS | 60.0% | |
| TAGTGTCCGGAACCGTGCCA+TGG | - | chr1_3:57700114-57700133 | None:intergenic | 60.0% | |
| !!! | GGGGACGAGAGGGTTTTGGG+TGG | + | chr1_3:57694500-57694519 | Msa0128040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57692806 | 57700611 | 57692806 | ID=Msa0128040;Name=Msa0128040 |
| chr1_3 | mRNA | 57692806 | 57700611 | 57692806 | ID=Msa0128040-mRNA-1;Parent=Msa0128040;Name=Msa0128040-mRNA-1;_AED=0.19;_eAED=0.19;_QI=382|0.83|1|1|1|1|7|267|342 |
| chr1_3 | exon | 57692806 | 57693445 | 57692806 | ID=Msa0128040-mRNA-1:exon:18394;Parent=Msa0128040-mRNA-1 |
| chr1_3 | exon | 57693527 | 57693594 | 57693527 | ID=Msa0128040-mRNA-1:exon:18395;Parent=Msa0128040-mRNA-1 |
| chr1_3 | exon | 57694374 | 57694440 | 57694374 | ID=Msa0128040-mRNA-1:exon:18396;Parent=Msa0128040-mRNA-1 |
| chr1_3 | exon | 57695736 | 57695890 | 57695736 | ID=Msa0128040-mRNA-1:exon:18397;Parent=Msa0128040-mRNA-1 |
| chr1_3 | exon | 57696008 | 57696084 | 57696008 | ID=Msa0128040-mRNA-1:exon:18398;Parent=Msa0128040-mRNA-1 |
| chr1_3 | exon | 57699330 | 57699430 | 57699330 | ID=Msa0128040-mRNA-1:exon:18399;Parent=Msa0128040-mRNA-1 |
| chr1_3 | exon | 57700042 | 57700611 | 57700042 | ID=Msa0128040-mRNA-1:exon:18400;Parent=Msa0128040-mRNA-1 |
| chr1_3 | five_prime_UTR | 57692806 | 57693187 | 57692806 | ID=Msa0128040-mRNA-1:five_prime_utr;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57693188 | 57693445 | 57693188 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57693527 | 57693594 | 57693527 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57694374 | 57694440 | 57694374 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57695736 | 57695890 | 57695736 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57696008 | 57696084 | 57696008 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57699330 | 57699430 | 57699330 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | CDS | 57700042 | 57700344 | 57700042 | ID=Msa0128040-mRNA-1:cds;Parent=Msa0128040-mRNA-1 |
| chr1_3 | three_prime_UTR | 57700345 | 57700611 | 57700345 | ID=Msa0128040-mRNA-1:three_prime_utr;Parent=Msa0128040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
