AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128260 MtrunA17_Chr1g0195081 96.454 423 11 2 1 423 1 419 0.0 830
Msa0128260 MtrunA17_Chr7g0268671 70.297 101 8 2 1 101 1 79 1.04e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128260 AT1G29220.1 60.674 267 87 5 170 423 90 351 2.86e-100 303
Msa0128260 AT1G29220.2 58.065 279 87 6 170 423 90 363 1.69e-96 293

Find 141 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTAGTTAATGGATTT+TGG 0.112017 1_3:-57923671 None:intergenic
ATTTCAATGTCTCCGAAAAT+TGG 0.145672 1_3:-57924852 None:intergenic
GATTGGGGAAAATTAGTTAA+TGG 0.230090 1_3:-57923678 None:intergenic
AGGATCAGCATGCCTGTTAC+AGG 0.285876 1_3:+57927433 Msa0128260:CDS
AGATCCTGAGCCATTCATTT+TGG 0.291747 1_3:+57928615 Msa0128260:exon
CTCGCCGGTAACTTCATTTC+CGG 0.297204 1_3:-57923979 None:intergenic
TACCAGGATATTGATCAAAT+AGG 0.319035 1_3:+57926535 Msa0128260:CDS
TTGATGCCATTGAAGGGGTT+AGG 0.320295 1_3:-57923773 None:intergenic
ACGCTTACGATAGTTGATTA+TGG 0.326108 1_3:+57924077 Msa0128260:CDS
TTGCAGGAGGGAGAGATAGA+TGG 0.331677 1_3:+57924489 Msa0128260:intron
TTTCAATGTCTCCGAAAATT+GGG 0.337673 1_3:-57924851 None:intergenic
AAACGCAGGAAAATTTGATT+TGG 0.341618 1_3:-57923629 None:intergenic
CAGAAGTAAAATCAACCTTT+TGG 0.345206 1_3:-57927375 None:intergenic
ATTTCCTGCTTCAGCTGGTC+TGG 0.348800 1_3:+57928756 Msa0128260:three_prime_UTR
CGACAACAGCGACGACGATA+TGG 0.354188 1_3:+57923839 Msa0128260:CDS
AGTGTTGATGTTTAACGATT+GGG 0.359843 1_3:-57923694 None:intergenic
GGAGTGTTAGCTTGATTGTT+AGG 0.363684 1_3:-57924829 None:intergenic
TCCTCTGCCCTCTGTGGGGC+AGG 0.375291 1_3:+57927768 Msa0128260:CDS
TTCTTCTTTGATGCCATTGA+AGG 0.378186 1_3:-57923780 None:intergenic
CTGCTGTCACACAGGAATAA+AGG 0.380075 1_3:-57928780 None:intergenic
GGTAGTGGTAGAGTTATGTT+TGG 0.384601 1_3:+57924510 Msa0128260:CDS
TGTAACAGGCATGCTGATCC+TGG 0.390154 1_3:-57927431 None:intergenic
TGATGCCATTGAAGGGGTTA+GGG 0.393288 1_3:-57923772 None:intergenic
GGAGCACCAAGCACAATTCC+TGG 0.394854 1_3:-57927409 None:intergenic
GTAGTGGTAGAGTTATGTTT+GGG 0.398710 1_3:+57924511 Msa0128260:CDS
TCCTCTGAGCATTTAACTTC+GGG 0.399431 1_3:-57924988 None:intergenic
AACTACAGGTGGTTTGCATT+TGG 0.399484 1_3:+57927581 Msa0128260:CDS
AAGATCTAGTGAAAGGAGGT+TGG 0.401837 1_3:+57928587 Msa0128260:CDS
TCGCCGGTAACTTCATTTCC+GGG 0.402289 1_3:-57923978 None:intergenic
GTGATTTCTAAACCTGTAAC+AGG 0.404398 1_3:-57927445 None:intergenic
TCTCCAAGCTCTGCATCATC+AGG 0.407205 1_3:-57924907 None:intergenic
CGGCGTCATCTTGCTCCTCC+TGG 0.418490 1_3:-57923893 None:intergenic
AAGAAATTTCCTGCTTCAGC+TGG 0.420662 1_3:+57928751 Msa0128260:three_prime_UTR
TTCCCGCTGGTTGATTGGTT+GGG 0.421989 1_3:+57928844 Msa0128260:three_prime_UTR
CAGCGGGAACAACTATTTCA+TGG 0.424196 1_3:-57928830 None:intergenic
GTCGCTGTTGTCGTTGTACA+TGG 0.428690 1_3:-57923829 None:intergenic
CTCCTCTGAGCATTTAACTT+CGG 0.432251 1_3:-57924989 None:intergenic
TTTCTGGAAGAGATGAAATT+CGG 0.434072 1_3:-57923726 None:intergenic
CTTTATTCCTGTGTGACAGC+AGG 0.435632 1_3:+57928781 Msa0128260:three_prime_UTR
AGTAGCAATGTCACCTGAAC+CGG 0.443032 1_3:+57924109 Msa0128260:CDS
ACCAGGATATTGATCAAATA+GGG 0.451137 1_3:+57926536 Msa0128260:CDS
ACAGCATGCAGTAAGAAGTC+AGG 0.452748 1_3:-57926508 None:intergenic
ATATGAGGCGAGAAAGTGAT+AGG 0.455219 1_3:+57927323 Msa0128260:CDS
CAAAACCCTAACCCCTTCAA+TGG 0.456860 1_3:+57923767 Msa0128260:exon
GTTCCCGCTGGTTGATTGGT+TGG 0.461343 1_3:+57928843 Msa0128260:three_prime_UTR
CAGGATTCTGTATCTACAGC+AGG 0.461924 1_3:+57927787 Msa0128260:CDS
AAGTGTTGATGTTTAACGAT+TGG 0.465643 1_3:-57923695 None:intergenic
TCTTCTTTGATGCCATTGAA+GGG 0.466002 1_3:-57923779 None:intergenic
AAAATTCCTCTGCCCTCTGT+GGG 0.466045 1_3:+57927763 Msa0128260:CDS
GGTGGTTCTGCTGCAACTAC+AGG 0.474888 1_3:+57927567 Msa0128260:intron
AGACCTGATGATGCAGAGCT+TGG 0.477379 1_3:+57924904 Msa0128260:CDS
ACCGGCGAAAACAATCTATT+CGG 0.477813 1_3:-57924011 None:intergenic
AGTTGTTCCCGCTGGTTGAT+TGG 0.481772 1_3:+57928839 Msa0128260:three_prime_UTR
TTGCTAGATAGAACATCATC+AGG 0.482498 1_3:+57924787 Msa0128260:CDS
TTAATGCAGAAGTTCGCAAC+AGG 0.487042 1_3:+57926470 Msa0128260:CDS
ACCCGTTGTTGCTCTTGCAC+CGG 0.489660 1_3:-57924029 None:intergenic
GGAAGATTTGACTGCCGATA+CGG 0.495294 1_3:+57923935 Msa0128260:CDS
CATTTAACTTCGGGTGGAGG+AGG 0.495435 1_3:-57924979 None:intergenic
TACCATTGGTTACATGATGT+TGG 0.503613 1_3:-57924536 None:intergenic
ACAAAGCAGAAGCTGATATG+AGG 0.508051 1_3:+57927308 Msa0128260:intron
GAGCATTTAACTTCGGGTGG+AGG 0.509611 1_3:-57924982 None:intergenic
AGAATGACCGTTGCTGATCC+CGG 0.510855 1_3:+57923960 Msa0128260:CDS
CGTCGCTGAACAAGCGGCGG+AGG 0.511380 1_3:+57923914 Msa0128260:CDS
TAAATTTCTGGAGTATAAGA+AGG 0.512451 1_3:+57926435 Msa0128260:CDS
AAAGATGTATTTGATCCTCA+TGG 0.513183 1_3:+57926571 Msa0128260:CDS
AGAAGAAGACGTGAATCGCC+AGG 0.516902 1_3:+57923875 Msa0128260:CDS
GTGTTGATGTTTAACGATTG+GGG 0.519587 1_3:-57923693 None:intergenic
AATCACATCGTCATTATTCA+CGG 0.520386 1_3:-57924881 None:intergenic
TATCAAACAGTGTTATAAGC+GGG 0.521026 1_3:+57928645 Msa0128260:three_prime_UTR
GTGTTATCTGCTACTAATGC+TGG 0.522239 1_3:+57927823 Msa0128260:CDS
GAATTGTGCTTGGTGCTCCC+AGG 0.522243 1_3:+57927413 Msa0128260:CDS
GCCGGTGCAAGAGCAACAAC+GGG 0.522968 1_3:+57924028 Msa0128260:CDS
CGCCGGTGCAAGAGCAACAA+CGG 0.525944 1_3:+57924027 Msa0128260:CDS
GGCATCAAAGAAGAAACAAT+CGG 0.534768 1_3:+57923788 Msa0128260:CDS
ACCCTATTTGATCAATATCC+TGG 0.535620 1_3:-57926537 None:intergenic
GCATAAATCTGAAGATCCAT+TGG 0.537067 1_3:+57924945 Msa0128260:CDS
GATCCCGGAAATGAAGTTAC+CGG 0.539683 1_3:+57923975 Msa0128260:CDS
GTCTTTGAGTTTGTTGTACG+AGG 0.539915 1_3:+57928935 Msa0128260:three_prime_UTR
CTTCTTTGATGCCATTGAAG+GGG 0.540176 1_3:-57923778 None:intergenic
AGAGAAGATCTAGTGAAAGG+AGG 0.544423 1_3:+57928583 Msa0128260:CDS
AGGACCAGACCAGCTGAAGC+AGG 0.545059 1_3:-57928760 None:intergenic
CTCCGCCGCTTGTTCAGCGA+CGG 0.547266 1_3:-57923913 None:intergenic
GGAGGAAGAAATTTATCCAA+TGG 0.548886 1_3:-57924961 None:intergenic
TTTCTGGAGTATAAGAAGGC+AGG 0.549624 1_3:+57926439 Msa0128260:CDS
GAAAATTCCTCTGCCCTCTG+TGG 0.551062 1_3:+57927762 Msa0128260:CDS
TCTGAGCATTTAACTTCGGG+TGG 0.551073 1_3:-57924985 None:intergenic
ATACAACAGACCAAAATGAA+TGG 0.551605 1_3:-57928625 None:intergenic
GAAGAAAGCACAGAACCAAA+AGG 0.553830 1_3:+57927360 Msa0128260:CDS
CATGAAATAGTTGTTCCCGC+TGG 0.555488 1_3:+57928831 Msa0128260:three_prime_UTR
ACTGCATGCTGTGAGGTACC+AGG 0.556776 1_3:+57926519 Msa0128260:CDS
GGAAATGAAGTTACCGGCGA+GGG 0.557957 1_3:+57923981 Msa0128260:CDS
TCCTGCCCCACAGAGGGCAG+AGG 0.560130 1_3:-57927769 None:intergenic
TTCATTTCCGGGATCAGCAA+CGG 0.561082 1_3:-57923967 None:intergenic
AACCCAACCAATCAACCAGC+GGG 0.566375 1_3:-57928846 None:intergenic
GCTGATTCTATTAATCGAGA+TGG 0.567276 1_3:+57927615 Msa0128260:CDS
CAGACCAAAATGAATGGCTC+AGG 0.567736 1_3:-57928619 None:intergenic
GTAACAGGCATGCTGATCCT+GGG 0.568611 1_3:-57927430 None:intergenic
GAGGGAGAGATAGATGGTAG+TGG 0.568695 1_3:+57924495 Msa0128260:CDS
AACGGTCATTCTATCCGTAT+CGG 0.573768 1_3:-57923949 None:intergenic
CGATTAATAGAATCAGCTGT+AGG 0.576341 1_3:-57927609 None:intergenic
GGTTCTGCTGCAACTACAGG+TGG 0.576883 1_3:+57927570 Msa0128260:CDS
CATAAATCCTGCTGTCACAC+AGG 0.580263 1_3:-57928788 None:intergenic
TCTGCTACTAATGCTGGCAG+TGG 0.582850 1_3:+57927829 Msa0128260:CDS
TTCAATGTCTCCGAAAATTG+GGG 0.583657 1_3:-57924850 None:intergenic
AGCGGGAACAACTATTTCAT+GGG 0.585351 1_3:-57928829 None:intergenic
GCAGTAAGAAGTCAGGGTTT+CGG 0.587267 1_3:-57926501 None:intergenic
AGGAGAGAAGATCTAGTGAA+AGG 0.588994 1_3:+57928580 Msa0128260:CDS
ACAGAATCCTGCCCCACAGA+GGG 0.590054 1_3:-57927775 None:intergenic
CAGCATGCAGTAAGAAGTCA+GGG 0.593688 1_3:-57926507 None:intergenic
ACACAACCAGGAATTGTGCT+TGG 0.599473 1_3:+57927403 Msa0128260:CDS
GGTGCAAGAGCAACAACGGG+TGG 0.600004 1_3:+57924031 Msa0128260:CDS
ATCAAACAGTGTTATAAGCG+GGG 0.607271 1_3:+57928646 Msa0128260:three_prime_UTR
GAAGAGATGAAATTCGGTGA+GGG 0.609024 1_3:-57923720 None:intergenic
TGACGCCGTCGCTGAACAAG+CGG 0.612156 1_3:+57923908 Msa0128260:CDS
GACCAACATCATGTAACCAA+TGG 0.613962 1_3:+57924534 Msa0128260:CDS
AGGATTCTGTATCTACAGCA+GGG 0.614180 1_3:+57927788 Msa0128260:CDS
CGCCGTCGCTGAACAAGCGG+CGG 0.615904 1_3:+57923911 Msa0128260:CDS
TCTTTGAGTTTGTTGTACGA+GGG 0.616155 1_3:+57928936 Msa0128260:three_prime_UTR
TTAATAGAATCAGCTGTAGG+AGG 0.622006 1_3:-57927606 None:intergenic
TCAAAGAAGAAACAATCGGA+AGG 0.625279 1_3:+57923792 Msa0128260:CDS
TGCAGAAGTTCGCAACAGGA+AGG 0.625826 1_3:+57926474 Msa0128260:CDS
AATGACAGGTGGATGGTGAT+CGG 0.628132 1_3:+57927740 Msa0128260:intron
AAACCCAACCAATCAACCAG+CGG 0.649693 1_3:-57928847 None:intergenic
ATTCGGAGTAAAACCCTCGC+CGG 0.650709 1_3:-57923994 None:intergenic
TCAAACAGTGTTATAAGCGG+GGG 0.653381 1_3:+57928647 Msa0128260:three_prime_UTR
AGCAATGTCACCTGAACCGG+AGG 0.656869 1_3:+57924112 Msa0128260:CDS
CGGAAATGAAGTTACCGGCG+AGG 0.662317 1_3:+57923980 Msa0128260:CDS
AAATTCCTCTGCCCTCTGTG+GGG 0.665822 1_3:+57927764 Msa0128260:CDS
TAGTGGTAGAGTTATGTTTG+GGG 0.667952 1_3:+57924512 Msa0128260:CDS
ACTTCTTACTGCATGCTGTG+AGG 0.672975 1_3:+57926512 Msa0128260:CDS
ATAATCAACTATCGTAAGCG+TGG 0.673820 1_3:-57924075 None:intergenic
TCTAGTGAATGACAGGTGGA+TGG 0.676721 1_3:+57927733 Msa0128260:intron
GTATCAAACAGTGTTATAAG+CGG 0.679287 1_3:+57928644 Msa0128260:three_prime_UTR
ATGAAAATAGGAGAAAACGC+AGG 0.681830 1_3:-57923643 None:intergenic
GGAAGAGATGAAATTCGGTG+AGG 0.681935 1_3:-57923721 None:intergenic
GGATTCTGTATCTACAGCAG+GGG 0.695787 1_3:+57927789 Msa0128260:CDS
TACAGAATCCTGCCCCACAG+AGG 0.701178 1_3:-57927776 None:intergenic
ACCCGAAGTTAAATGCTCAG+AGG 0.706953 1_3:+57924987 Msa0128260:CDS
AGAAGACGTGAATCGCCAGG+AGG 0.711297 1_3:+57923878 Msa0128260:CDS
TCACTTGAATCATATCCATG+AGG 0.732824 1_3:-57926586 None:intergenic
CAAACTCAAAGACAATACAG+TGG 0.753185 1_3:-57928925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTTATCAAATTCAT+TGG - chr1_3:57925151-57925170 None:intergenic 15.0%
!! ATTTGATAAAAAAGAAACTT+TGG + chr1_3:57925155-57925174 Msa0128260:intron 15.0%
!! GAGAAAAATAAATAAATTTC+TGG + chr1_3:57926423-57926442 Msa0128260:intron 15.0%
!! ACAGAATAAAAAATCAAAAT+GGG + chr1_3:57927641-57927660 Msa0128260:CDS 15.0%
!! TTCTTTAATTAAATGATAAC+AGG - chr1_3:57928002-57928021 None:intergenic 15.0%
!!! TAAAAAGCATTATTTAACAT+AGG - chr1_3:57928185-57928204 None:intergenic 15.0%
!!! AAAAGTGAAACTTTTTTTAA+AGG - chr1_3:57928336-57928355 None:intergenic 15.0%
!!! TTTTTGCTTGTTTATTATTT+CGG + chr1_3:57928691-57928710 Msa0128260:three_prime_UTR 15.0%
!!! GAAAATTAGTTAATGGATTT+TGG - chr1_3:57923674-57923693 None:intergenic 20.0%
!!! GTTTTGAAATTTGTTGAATT+GGG - chr1_3:57923753-57923772 None:intergenic 20.0%
!! AAAAGTAAGTTAGTATGAAA+TGG + chr1_3:57924220-57924239 Msa0128260:intron 20.0%
!!! TTCAAGTTAGAATCAAATTT+TGG + chr1_3:57924317-57924336 Msa0128260:intron 20.0%
!!! AAAATTGATTTTGACATGTA+TGG - chr1_3:57924371-57924390 None:intergenic 20.0%
!! TTTAATCTGTGACAAATATA+TGG + chr1_3:57924628-57924647 Msa0128260:intron 20.0%
!!! ACTTTTTCTAAACAAAACAA+TGG - chr1_3:57924667-57924686 None:intergenic 20.0%
!! TTAATCTTATATTTCAGCTT+AGG - chr1_3:57925374-57925393 None:intergenic 20.0%
!!! CATAAATTTTATTTATCGAG+TGG - chr1_3:57925612-57925631 None:intergenic 20.0%
!!! AGTTTTATTATGTTGAAACT+TGG + chr1_3:57925753-57925772 Msa0128260:intron 20.0%
!! ATACAATAATCTACATAATG+TGG - chr1_3:57925786-57925805 None:intergenic 20.0%
!! TATGTAGATAAAGAATACTA+AGG + chr1_3:57925871-57925890 Msa0128260:intron 20.0%
!! ATGTAGATAAAGAATACTAA+GGG + chr1_3:57925872-57925891 Msa0128260:intron 20.0%
!! TAAAGATTTATGTTCTATGT+AGG + chr1_3:57926278-57926297 Msa0128260:intron 20.0%
!! AAAGATTTATGTTCTATGTA+GGG + chr1_3:57926279-57926298 Msa0128260:intron 20.0%
!! ACAAAATTTGTCAAAAATGA+GGG - chr1_3:57927099-57927118 None:intergenic 20.0%
!! AACAAAATTTGTCAAAAATG+AGG - chr1_3:57927100-57927119 None:intergenic 20.0%
!!! TCATTTTTGACAAATTTTGT+TGG + chr1_3:57927099-57927118 Msa0128260:intron 20.0%
!! AATAATAAAGTAGTTGAGAT+TGG - chr1_3:57927188-57927207 None:intergenic 20.0%
!! GACAGAATAAAAAATCAAAA+TGG + chr1_3:57927640-57927659 Msa0128260:CDS 20.0%
!! TAAAAAATCAAAATGGGATA+AGG + chr1_3:57927647-57927666 Msa0128260:CDS 20.0%
!!! TTCTATCTTTCTTTTGATTT+TGG + chr1_3:57927902-57927921 Msa0128260:intron 20.0%
!! TTAAATAGTTTCATTTCTCT+GGG + chr1_3:57928122-57928141 Msa0128260:intron 20.0%
!!! GTATCAACATTTAATTTTAG+TGG - chr1_3:57928515-57928534 None:intergenic 20.0%
!!! CAAGCAATGATATTTTTATA+CGG - chr1_3:57928884-57928903 None:intergenic 20.0%
!!! ATTTTGGAGAGAATGAAAAT+AGG - chr1_3:57923658-57923677 None:intergenic 25.0%
!!! GGTTTTGAAATTTGTTGAAT+TGG - chr1_3:57923754-57923773 None:intergenic 25.0%
!!! TTTTTTTTTTCCCTTTCTCT+TGG + chr1_3:57924139-57924158 Msa0128260:intron 25.0%
! AGTATGAAATGGTATATGTT+TGG + chr1_3:57924231-57924250 Msa0128260:intron 25.0%
!! AAGTTAGAATCAAATTTTGG+AGG + chr1_3:57924320-57924339 Msa0128260:intron 25.0%
! AATCTAACTAAACCTATGTT+TGG - chr1_3:57924433-57924452 None:intergenic 25.0%
! TAGTTAGATTATACACTGAA+AGG + chr1_3:57924443-57924462 Msa0128260:intron 25.0%
! ATTATACACTGAAAGGTAAT+GGG + chr1_3:57924450-57924469 Msa0128260:intron 25.0%
! AAATATATGGAAACTTCCAA+AGG + chr1_3:57924641-57924660 Msa0128260:intron 25.0%
! CACGAAAAAATTGTAACAAA+CGG + chr1_3:57924695-57924714 Msa0128260:intron 25.0%
! ACGAAAAAATTGTAACAAAC+GGG + chr1_3:57924696-57924715 Msa0128260:intron 25.0%
! TACAAGTAAGTTCTCTTTAA+TGG + chr1_3:57925013-57925032 Msa0128260:intron 25.0%
!!! TATAGTTGATGAATGTCATT+TGG + chr1_3:57925045-57925064 Msa0128260:intron 25.0%
!!! GTTTATATTGCCTTTGTTTT+GGG + chr1_3:57925348-57925367 Msa0128260:intron 25.0%
!! CTAACACCAATTTTTACATA+GGG - chr1_3:57925585-57925604 None:intergenic 25.0%
!! ACTAACACCAATTTTTACAT+AGG - chr1_3:57925586-57925605 None:intergenic 25.0%
! GGAGAAAAATAAGTGTTTAA+TGG - chr1_3:57925823-57925842 None:intergenic 25.0%
! TGTAGATAAAGAATACTAAG+GGG + chr1_3:57925873-57925892 Msa0128260:intron 25.0%
! ATAAATCCTATCATATCACT+AGG - chr1_3:57926185-57926204 None:intergenic 25.0%
! AAGATTTATGTTCTATGTAG+GGG + chr1_3:57926280-57926299 Msa0128260:intron 25.0%
!! GTAAATTGAATCTTTTGCTT+TGG + chr1_3:57926324-57926343 Msa0128260:intron 25.0%
! GATATCATGAAAATTGACAA+GGG - chr1_3:57926384-57926403 None:intergenic 25.0%
! CTCTGCAATAATCAATTTAA+AGG - chr1_3:57926406-57926425 None:intergenic 25.0%
!!! TAAATTTCTGGAGTATAAGA+AGG + chr1_3:57926435-57926454 Msa0128260:CDS 25.0%
!! AGTGACTTTTATGATCAAAT+AGG + chr1_3:57926604-57926623 Msa0128260:CDS 25.0%
! GGAAAACAAAATTCTAATAC+TGG - chr1_3:57926882-57926901 None:intergenic 25.0%
! CAAAATTTGTCAAAAATGAG+GGG - chr1_3:57927098-57927117 None:intergenic 25.0%
!! AATTAATGTTAGCGTTGTTT+TGG + chr1_3:57927235-57927254 Msa0128260:intron 25.0%
!!! AAAAGGTTGATTTTACTTCT+GGG + chr1_3:57927377-57927396 Msa0128260:CDS 25.0%
!!! TTTATGTTGACTTTTTGCAT+AGG + chr1_3:57927546-57927565 Msa0128260:intron 25.0%
! GTTAAATAGTTTCATTTCTC+TGG + chr1_3:57928121-57928140 Msa0128260:intron 25.0%
!!! GTATTTTTGCTGTAATTGTA+TGG + chr1_3:57928218-57928237 Msa0128260:intron 25.0%
!! TTTACAAACTCTGTTTTGTA+TGG + chr1_3:57928364-57928383 Msa0128260:intron 25.0%
!!! TAGATTTTGAAATCAAACTG+AGG - chr1_3:57928427-57928446 None:intergenic 25.0%
! CATAACATTGACAATAAACA+AGG - chr1_3:57928464-57928483 None:intergenic 25.0%
AAGCAGAAAAAGAATGAAGA+CGG - chr1_3:57923590-57923609 None:intergenic 30.0%
AAACGCAGGAAAATTTGATT+TGG - chr1_3:57923632-57923651 None:intergenic 30.0%
GATTGGGGAAAATTAGTTAA+TGG - chr1_3:57923681-57923700 None:intergenic 30.0%
!! AGTGTTGATGTTTAACGATT+GGG - chr1_3:57923697-57923716 None:intergenic 30.0%
!! AAGTGTTGATGTTTAACGAT+TGG - chr1_3:57923698-57923717 None:intergenic 30.0%
! TTTCTGGAAGAGATGAAATT+CGG - chr1_3:57923729-57923748 None:intergenic 30.0%
!! ATTTGTTGAATTGGGTTTTC+TGG - chr1_3:57923745-57923764 None:intergenic 30.0%
GGAAAAAAAAAAACTACCTC+CGG - chr1_3:57924131-57924150 None:intergenic 30.0%
GATTATACACTGAAAGGTAA+TGG + chr1_3:57924449-57924468 Msa0128260:intron 30.0%
CTGAAAATTGAACTTACCAT+TGG - chr1_3:57924553-57924572 None:intergenic 30.0%
CTGCAGAAAAATTTCATGTT+GGG - chr1_3:57924762-57924781 None:intergenic 30.0%
TTTCAATGTCTCCGAAAATT+GGG - chr1_3:57924854-57924873 None:intergenic 30.0%
ATTTCAATGTCTCCGAAAAT+TGG - chr1_3:57924855-57924874 None:intergenic 30.0%
AATCACATCGTCATTATTCA+CGG - chr1_3:57924884-57924903 None:intergenic 30.0%
AGAATATTGAATGCTTGATC+AGG - chr1_3:57925122-57925141 None:intergenic 30.0%
AAAGAAACTTTGGCAATTAG+AGG + chr1_3:57925165-57925184 Msa0128260:intron 30.0%
AAGAAACTTTGGCAATTAGA+GGG + chr1_3:57925166-57925185 Msa0128260:intron 30.0%
ATCTTATTACCTTTCTTTGC+TGG + chr1_3:57925209-57925228 Msa0128260:intron 30.0%
! CTGTAATTTTCACATTAGAG+TGG + chr1_3:57925326-57925345 Msa0128260:intron 30.0%
!! GGTTTATATTGCCTTTGTTT+TGG + chr1_3:57925347-57925366 Msa0128260:intron 30.0%
CTCGGTGAAAAATAAACATT+GGG - chr1_3:57925492-57925511 None:intergenic 30.0%
! ACTCGGTGAAAAATAAACAT+TGG - chr1_3:57925493-57925512 None:intergenic 30.0%
! TTTTTCACCGAGTAAAAAGA+TGG + chr1_3:57925500-57925519 Msa0128260:intron 30.0%
! TTTTCACCGAGTAAAAAGAT+GGG + chr1_3:57925501-57925520 Msa0128260:intron 30.0%
TCTTTCCGATTATTAGCAAA+AGG + chr1_3:57925681-57925700 Msa0128260:intron 30.0%
CTTTCCGATTATTAGCAAAA+GGG + chr1_3:57925682-57925701 Msa0128260:intron 30.0%
TTTCCGATTATTAGCAAAAG+GGG + chr1_3:57925683-57925702 Msa0128260:intron 30.0%
CAACATAATAAAACTTTGCC+TGG - chr1_3:57925748-57925767 None:intergenic 30.0%
ATTATGTTGAAACTTGGAAG+TGG + chr1_3:57925759-57925778 Msa0128260:intron 30.0%
AATGGTGAGTAAGTTATACA+AGG + chr1_3:57925935-57925954 Msa0128260:intron 30.0%
TAAGTTATACAAGGAACAAG+AGG + chr1_3:57925944-57925963 Msa0128260:intron 30.0%
AAGTTATACAAGGAACAAGA+GGG + chr1_3:57925945-57925964 Msa0128260:intron 30.0%
TATACTATAGAGAGTTAGTC+AGG + chr1_3:57925993-57926012 Msa0128260:intron 30.0%
AAGATCGAAGATTCAAATAC+TGG - chr1_3:57926116-57926135 None:intergenic 30.0%
ATCACTAGGTATTACATTTC+TGG - chr1_3:57926171-57926190 None:intergenic 30.0%
GTAATACCTAGTGATATGAT+AGG + chr1_3:57926176-57926195 Msa0128260:intron 30.0%
AGATTTATGTTCTATGTAGG+GGG + chr1_3:57926281-57926300 Msa0128260:intron 30.0%
! AATTGAATCTTTTGCTTTGG+TGG + chr1_3:57926327-57926346 Msa0128260:intron 30.0%
GGATATCATGAAAATTGACA+AGG - chr1_3:57926385-57926404 None:intergenic 30.0%
TACCAGGATATTGATCAAAT+AGG + chr1_3:57926535-57926554 Msa0128260:CDS 30.0%
ACCAGGATATTGATCAAATA+GGG + chr1_3:57926536-57926555 Msa0128260:CDS 30.0%
AAAGATGTATTTGATCCTCA+TGG + chr1_3:57926571-57926590 Msa0128260:CDS 30.0%
TTAGATAAAAGATGGAGAGA+GGG - chr1_3:57926641-57926660 None:intergenic 30.0%
ACTAACGCTTAGATAAAAGA+TGG - chr1_3:57926649-57926668 None:intergenic 30.0%
! ATCTTTTATCTAAGCGTTAG+TGG + chr1_3:57926648-57926667 Msa0128260:intron 30.0%
TATACTTTAAATCAGCCTTC+AGG - chr1_3:57926831-57926850 None:intergenic 30.0%
!! ATACTTTGAGGTTATCATTC+AGG + chr1_3:57926912-57926931 Msa0128260:intron 30.0%
GAACTTGTGTTAGAGTAATT+AGG + chr1_3:57926947-57926966 Msa0128260:intron 30.0%
TAGAGTAATTAGGATAAGCT+TGG + chr1_3:57926957-57926976 Msa0128260:intron 30.0%
TGATAGTCAAAATAGTAGTC+TGG - chr1_3:57927001-57927020 None:intergenic 30.0%
GGAAAGTAGTGTAAAAACAA+CGG - chr1_3:57927261-57927280 None:intergenic 30.0%
!!! TTCTGCTTTGTTTTAGACAA+CGG - chr1_3:57927299-57927318 None:intergenic 30.0%
! CAGAAGTAAAATCAACCTTT+TGG - chr1_3:57927378-57927397 None:intergenic 30.0%
!! CAAAAGGTTGATTTTACTTC+TGG + chr1_3:57927376-57927395 Msa0128260:CDS 30.0%
!! AAAGGTTGATTTTACTTCTG+GGG + chr1_3:57927378-57927397 Msa0128260:CDS 30.0%
ACTAAATTCTAGTGAATGAC+AGG + chr1_3:57927726-57927745 Msa0128260:intron 30.0%
! CAGTTTGTAAGATTTGAGTT+TGG + chr1_3:57927934-57927953 Msa0128260:intron 30.0%
! TGTAAGATTTGAGTTTGGTT+TGG + chr1_3:57927939-57927958 Msa0128260:intron 30.0%
!! TTGGAGTATTGAATTGAGAA+TGG + chr1_3:57928148-57928167 Msa0128260:intron 30.0%
!! TGGAGTATTGAATTGAGAAT+GGG + chr1_3:57928149-57928168 Msa0128260:intron 30.0%
GATTAGATGAAAGACTACAA+TGG - chr1_3:57928264-57928283 None:intergenic 30.0%
! AAAACTCTAAAAGAAGCACA+AGG - chr1_3:57928295-57928314 None:intergenic 30.0%
ATACAACAGACCAAAATGAA+TGG - chr1_3:57928628-57928647 None:intergenic 30.0%
GTATCAAACAGTGTTATAAG+CGG + chr1_3:57928644-57928663 Msa0128260:three_prime_UTR 30.0%
TATCAAACAGTGTTATAAGC+GGG + chr1_3:57928645-57928664 Msa0128260:three_prime_UTR 30.0%
ATGAAAATAGGAGAAAACGC+AGG - chr1_3:57923646-57923665 None:intergenic 35.0%
! GTGTTGATGTTTAACGATTG+GGG - chr1_3:57923696-57923715 None:intergenic 35.0%
TCTTCTTTGATGCCATTGAA+GGG - chr1_3:57923782-57923801 None:intergenic 35.0%
TTCTTCTTTGATGCCATTGA+AGG - chr1_3:57923783-57923802 None:intergenic 35.0%
GGCATCAAAGAAGAAACAAT+CGG + chr1_3:57923788-57923807 Msa0128260:CDS 35.0%
TCAAAGAAGAAACAATCGGA+AGG + chr1_3:57923792-57923811 Msa0128260:CDS 35.0%
ATAATCAACTATCGTAAGCG+TGG - chr1_3:57924078-57924097 None:intergenic 35.0%
ACGCTTACGATAGTTGATTA+TGG + chr1_3:57924077-57924096 Msa0128260:CDS 35.0%
TACACCTCTTGAATCAGTTA+TGG + chr1_3:57924390-57924409 Msa0128260:intron 35.0%
!!! TGTTAGTTGGTTTTTGTTGC+AGG + chr1_3:57924473-57924492 Msa0128260:intron 35.0%
GTAGTGGTAGAGTTATGTTT+GGG + chr1_3:57924511-57924530 Msa0128260:CDS 35.0%
TAGTGGTAGAGTTATGTTTG+GGG + chr1_3:57924512-57924531 Msa0128260:CDS 35.0%
! TACCATTGGTTACATGATGT+TGG - chr1_3:57924539-57924558 None:intergenic 35.0%
CTAAACAAAACAATGGCCTT+TGG - chr1_3:57924660-57924679 None:intergenic 35.0%
ATTGTAACAAACGGGATCTT+AGG + chr1_3:57924704-57924723 Msa0128260:intron 35.0%
CCTGCAGAAAAATTTCATGT+TGG - chr1_3:57924763-57924782 None:intergenic 35.0%
! CCAACATGAAATTTTTCTGC+AGG + chr1_3:57924760-57924779 Msa0128260:intron 35.0%
TTGCTAGATAGAACATCATC+AGG + chr1_3:57924787-57924806 Msa0128260:CDS 35.0%
TTCAATGTCTCCGAAAATTG+GGG - chr1_3:57924853-57924872 None:intergenic 35.0%
GCATAAATCTGAAGATCCAT+TGG + chr1_3:57924945-57924964 Msa0128260:CDS 35.0%
GGAGGAAGAAATTTATCCAA+TGG - chr1_3:57924964-57924983 None:intergenic 35.0%
AGTTTAACTCAGCAATTGCA+TGG - chr1_3:57925086-57925105 None:intergenic 35.0%
ATGCAATTGCTGAGTTAAAC+TGG + chr1_3:57925085-57925104 Msa0128260:intron 35.0%
TCTATGCATTTCATGGAGAT+AGG + chr1_3:57925238-57925257 Msa0128260:intron 35.0%
AGGGTAAAGTAAAACAACAG+AGG - chr1_3:57925458-57925477 None:intergenic 35.0%
ACATTGGGATTCTACTATCA+GGG - chr1_3:57925477-57925496 None:intergenic 35.0%
AACATTGGGATTCTACTATC+AGG - chr1_3:57925478-57925497 None:intergenic 35.0%
! TTTCCACCCATCTTTTTACT+CGG - chr1_3:57925510-57925529 None:intergenic 35.0%
! TTGGTGCCCTATGTAAAAAT+TGG + chr1_3:57925576-57925595 Msa0128260:intron 35.0%
! CTTCCCCTTTTGCTAATAAT+CGG - chr1_3:57925689-57925708 None:intergenic 35.0%
TATTAGCAAAAGGGGAAGAA+AGG + chr1_3:57925691-57925710 Msa0128260:intron 35.0%
ACTACCATTGTTCAATAACC+AGG + chr1_3:57925727-57925746 Msa0128260:intron 35.0%
TTTGCCTGGTTATTGAACAA+TGG - chr1_3:57925734-57925753 None:intergenic 35.0%
ATAAAACTTCCAAGTAGCAG+AGG - chr1_3:57925848-57925867 None:intergenic 35.0%
AGTTATACAAGGAACAAGAG+GGG + chr1_3:57925946-57925965 Msa0128260:intron 35.0%
!!! CTTTTCCAGAGAAGTATTCT+CGG - chr1_3:57926022-57926041 None:intergenic 35.0%
! GAGAATACTTCTCTGGAAAA+GGG + chr1_3:57926021-57926040 Msa0128260:intron 35.0%
! ACAATCCAACTCTTTTTCCT+AGG + chr1_3:57926138-57926157 Msa0128260:intron 35.0%
ATATAATTGACCCCATCTAC+TGG + chr1_3:57926220-57926239 Msa0128260:intron 35.0%
ACCCTATTTGATCAATATCC+TGG - chr1_3:57926540-57926559 None:intergenic 35.0%
TCACTTGAATCATATCCATG+AGG - chr1_3:57926589-57926608 None:intergenic 35.0%
CTTAGATAAAAGATGGAGAG+AGG - chr1_3:57926642-57926661 None:intergenic 35.0%
ATCAATAGCATAACTCTCAG+TGG - chr1_3:57926790-57926809 None:intergenic 35.0%
! TTAAATCAGCCTTCAGGTTA+GGG - chr1_3:57926825-57926844 None:intergenic 35.0%
! TTTAAATCAGCCTTCAGGTT+AGG - chr1_3:57926826-57926845 None:intergenic 35.0%
! ATACTGGCATCGAAAATATG+AGG - chr1_3:57926866-57926885 None:intergenic 35.0%
CAAATTAGTAGATGCATGCA+AGG - chr1_3:57927130-57927149 None:intergenic 35.0%
!! AAGGTTGATTTTACTTCTGG+GGG + chr1_3:57927379-57927398 Msa0128260:CDS 35.0%
GTGATTTCTAAACCTGTAAC+AGG - chr1_3:57927448-57927467 None:intergenic 35.0%
! CAGCACTGAACAAATAAACT+AGG - chr1_3:57927470-57927489 None:intergenic 35.0%
!!! ATGTTGACTTTTTGCATAGG+TGG + chr1_3:57927549-57927568 Msa0128260:intron 35.0%
TTAATAGAATCAGCTGTAGG+AGG - chr1_3:57927609-57927628 None:intergenic 35.0%
CGATTAATAGAATCAGCTGT+AGG - chr1_3:57927612-57927631 None:intergenic 35.0%
! GCTGATTCTATTAATCGAGA+TGG + chr1_3:57927615-57927634 Msa0128260:CDS 35.0%
AAATTCTAGTGAATGACAGG+TGG + chr1_3:57927729-57927748 Msa0128260:intron 35.0%
AGAATGCAGAAAGAAGTTCA+AGG - chr1_3:57927886-57927905 None:intergenic 35.0%
!! GTTTCATTTCTCTGGGATAT+TGG + chr1_3:57928129-57928148 Msa0128260:intron 35.0%
!! AATGCTTTTTAGTGTAGCAG+TGG + chr1_3:57928194-57928213 Msa0128260:intron 35.0%
! TTTGCTGTAATTGTATGGCT+CGG + chr1_3:57928223-57928242 Msa0128260:intron 35.0%
CTACAATGGAACAATCACAT+TGG - chr1_3:57928250-57928269 None:intergenic 35.0%
! TCTGTTTTGTATGGAGAAGA+TGG + chr1_3:57928373-57928392 Msa0128260:intron 35.0%
GATACAATTACCACTGTTGT+CGG + chr1_3:57928530-57928549 Msa0128260:intron 35.0%
ATCAAACAGTGTTATAAGCG+GGG + chr1_3:57928646-57928665 Msa0128260:three_prime_UTR 35.0%
CAAACTCAAAGACAATACAG+TGG - chr1_3:57928928-57928947 None:intergenic 35.0%
!! TCTTTGAGTTTGTTGTACGA+GGG + chr1_3:57928936-57928955 Msa0128260:three_prime_UTR 35.0%
! GAAGAGATGAAATTCGGTGA+GGG - chr1_3:57923723-57923742 None:intergenic 40.0%
CTTCTTTGATGCCATTGAAG+GGG - chr1_3:57923781-57923800 None:intergenic 40.0%
AACGGTCATTCTATCCGTAT+CGG - chr1_3:57923952-57923971 None:intergenic 40.0%
! TCCGAATAGATTGTTTTCGC+CGG + chr1_3:57924010-57924029 Msa0128260:CDS 40.0%
ACCGGCGAAAACAATCTATT+CGG - chr1_3:57924014-57924033 None:intergenic 40.0%
AAAAAAACTACCTCCGGTTC+AGG - chr1_3:57924125-57924144 None:intergenic 40.0%
AGAGAATGCTCCAAGAGAAA+GGG - chr1_3:57924152-57924171 None:intergenic 40.0%
AAGAGAATGCTCCAAGAGAA+AGG - chr1_3:57924153-57924172 None:intergenic 40.0%
! TTCTCTTGGAGCATTCTCTT+TGG + chr1_3:57924153-57924172 Msa0128260:intron 40.0%
! GCAACCATAACTGATTCAAG+AGG - chr1_3:57924397-57924416 None:intergenic 40.0%
AGTTATGGTTGCTCCAAATG+TGG + chr1_3:57924405-57924424 Msa0128260:intron 40.0%
! CCTATGTTTGGTTCCACATT+TGG - chr1_3:57924421-57924440 None:intergenic 40.0%
CCAAATGTGGAACCAAACAT+AGG + chr1_3:57924418-57924437 Msa0128260:intron 40.0%
!! GAAAGGTAATGGGTGTTAGT+TGG + chr1_3:57924460-57924479 Msa0128260:intron 40.0%
!!! TAGTTGGTTTTTGTTGCAGG+AGG + chr1_3:57924476-57924495 Msa0128260:intron 40.0%
!!! AGTTGGTTTTTGTTGCAGGA+GGG + chr1_3:57924477-57924496 Msa0128260:intron 40.0%
! GGTAGTGGTAGAGTTATGTT+TGG + chr1_3:57924510-57924529 Msa0128260:CDS 40.0%
GACCAACATCATGTAACCAA+TGG + chr1_3:57924534-57924553 Msa0128260:CDS 40.0%
! GGAGTGTTAGCTTGATTGTT+AGG - chr1_3:57924832-57924851 None:intergenic 40.0%
! AGCTAACACTCCCCAATTTT+CGG + chr1_3:57924840-57924859 Msa0128260:CDS 40.0%
! TCCTCTGAGCATTTAACTTC+GGG - chr1_3:57924991-57925010 None:intergenic 40.0%
! CTCCTCTGAGCATTTAACTT+CGG - chr1_3:57924992-57925011 None:intergenic 40.0%
GTCAGCATCTATGCATTTCA+TGG + chr1_3:57925231-57925250 Msa0128260:intron 40.0%
CAGATTATTGTTGCTGAGAC+AGG - chr1_3:57925297-57925316 None:intergenic 40.0%
CTGTCTCAGCAACAATAATC+TGG + chr1_3:57925295-57925314 Msa0128260:intron 40.0%
! CCATTTTCTAATGCTGAGAG+CGG + chr1_3:57925546-57925565 Msa0128260:intron 40.0%
! CATTTTCTAATGCTGAGAGC+GGG + chr1_3:57925547-57925566 Msa0128260:intron 40.0%
! ATTTTCTAATGCTGAGAGCG+GGG + chr1_3:57925548-57925567 Msa0128260:intron 40.0%
AAGGGGAAGAAAGGAAAACA+AGG + chr1_3:57925700-57925719 Msa0128260:intron 40.0%
GGAGGAAAATCAGTGTCTAA+TGG + chr1_3:57925917-57925936 Msa0128260:intron 40.0%
GTTATACAAGGAACAAGAGG+GGG + chr1_3:57925947-57925966 Msa0128260:intron 40.0%
! CGAGAATACTTCTCTGGAAA+AGG + chr1_3:57926020-57926039 Msa0128260:intron 40.0%
TTATGTTCTATGTAGGGGGT+AGG + chr1_3:57926285-57926304 Msa0128260:intron 40.0%
!! TTTCTGGAGTATAAGAAGGC+AGG + chr1_3:57926439-57926458 Msa0128260:CDS 40.0%
TTAATGCAGAAGTTCGCAAC+AGG + chr1_3:57926470-57926489 Msa0128260:CDS 40.0%
GATGGAGAGAGGGAAAATTA+CGG - chr1_3:57926631-57926650 None:intergenic 40.0%
! TAAATCAGCCTTCAGGTTAG+GGG - chr1_3:57926824-57926843 None:intergenic 40.0%
! CCTCAAAGTATCTTGAGAAC+AGG - chr1_3:57926903-57926922 None:intergenic 40.0%
CCTGTTCTCAAGATACTTTG+AGG + chr1_3:57926900-57926919 Msa0128260:intron 40.0%
! TTTGAGGTTATCATTCAGGC+TGG + chr1_3:57926916-57926935 Msa0128260:intron 40.0%
TTGTCAAAAATGAGGGGAGA+GGG - chr1_3:57927092-57927111 None:intergenic 40.0%
TTTGTCAAAAATGAGGGGAG+AGG - chr1_3:57927093-57927112 None:intergenic 40.0%
CAACGGACAAAAGCAAATGA+GGG - chr1_3:57927282-57927301 None:intergenic 40.0%
ACAACGGACAAAAGCAAATG+AGG - chr1_3:57927283-57927302 None:intergenic 40.0%
ACAAAGCAGAAGCTGATATG+AGG + chr1_3:57927308-57927327 Msa0128260:intron 40.0%
ATATGAGGCGAGAAAGTGAT+AGG + chr1_3:57927323-57927342 Msa0128260:CDS 40.0%
! GAAGAAAGCACAGAACCAAA+AGG + chr1_3:57927360-57927379 Msa0128260:CDS 40.0%
! AACTACAGGTGGTTTGCATT+TGG + chr1_3:57927581-57927600 Msa0128260:CDS 40.0%
AGGATTCTGTATCTACAGCA+GGG + chr1_3:57927788-57927807 Msa0128260:CDS 40.0%
GTGTTATCTGCTACTAATGC+TGG + chr1_3:57927823-57927842 Msa0128260:CDS 40.0%
TTGCTGTAATTGTATGGCTC+GGG + chr1_3:57928224-57928243 Msa0128260:intron 40.0%
AGGAGAGAAGATCTAGTGAA+AGG + chr1_3:57928580-57928599 Msa0128260:CDS 40.0%
AGAGAAGATCTAGTGAAAGG+AGG + chr1_3:57928583-57928602 Msa0128260:CDS 40.0%
AAGATCTAGTGAAAGGAGGT+TGG + chr1_3:57928587-57928606 Msa0128260:CDS 40.0%
! AGATCCTGAGCCATTCATTT+TGG + chr1_3:57928615-57928634 Msa0128260:exon 40.0%
TCAAACAGTGTTATAAGCGG+GGG + chr1_3:57928647-57928666 Msa0128260:three_prime_UTR 40.0%
AAGAAATTTCCTGCTTCAGC+TGG + chr1_3:57928751-57928770 Msa0128260:three_prime_UTR 40.0%
AGCGGGAACAACTATTTCAT+GGG - chr1_3:57928832-57928851 None:intergenic 40.0%
!! GTCTTTGAGTTTGTTGTACG+AGG + chr1_3:57928935-57928954 Msa0128260:three_prime_UTR 40.0%
! GGAAGAGATGAAATTCGGTG+AGG - chr1_3:57923724-57923743 None:intergenic 45.0%
CAAAACCCTAACCCCTTCAA+TGG + chr1_3:57923767-57923786 Msa0128260:exon 45.0%
TGATGCCATTGAAGGGGTTA+GGG - chr1_3:57923775-57923794 None:intergenic 45.0%
TTGATGCCATTGAAGGGGTT+AGG - chr1_3:57923776-57923795 None:intergenic 45.0%
GGAAGATTTGACTGCCGATA+CGG + chr1_3:57923935-57923954 Msa0128260:CDS 45.0%
TTCATTTCCGGGATCAGCAA+CGG - chr1_3:57923970-57923989 None:intergenic 45.0%
GATCCCGGAAATGAAGTTAC+CGG + chr1_3:57923975-57923994 Msa0128260:CDS 45.0%
AGTAGCAATGTCACCTGAAC+CGG + chr1_3:57924109-57924128 Msa0128260:CDS 45.0%
! TCTGAGCATTTAACTTCGGG+TGG - chr1_3:57924988-57925007 None:intergenic 45.0%
ACCCGAAGTTAAATGCTCAG+AGG + chr1_3:57924987-57925006 Msa0128260:CDS 45.0%
AGATGCTGACCAGCAAAGAA+AGG - chr1_3:57925221-57925240 None:intergenic 45.0%
TCAGCTTAGGCCCAAAACAA+AGG - chr1_3:57925361-57925380 None:intergenic 45.0%
TCACCGAGTAAAAAGATGGG+TGG + chr1_3:57925504-57925523 Msa0128260:intron 45.0%
CCGCTCTCAGCATTAGAAAA+TGG - chr1_3:57925549-57925568 None:intergenic 45.0%
TTTCTCCTACCTCTGCTACT+TGG + chr1_3:57925836-57925855 Msa0128260:intron 45.0%
AACTTCCAAGTAGCAGAGGT+AGG - chr1_3:57925844-57925863 None:intergenic 45.0%
GAATACTAAGGGGCTGAACT+AGG + chr1_3:57925883-57925902 Msa0128260:intron 45.0%
GGGAAGAGAGAGATCAATTC+AGG + chr1_3:57925967-57925986 Msa0128260:intron 45.0%
CCATGCCTAGGAAAAAGAGT+TGG - chr1_3:57926146-57926165 None:intergenic 45.0%
! CCAACTCTTTTTCCTAGGCA+TGG + chr1_3:57926143-57926162 Msa0128260:intron 45.0%
!! ACATTTCTGGTACCATGCCT+AGG - chr1_3:57926158-57926177 None:intergenic 45.0%
ATTGACCCCATCTACTGGAA+TGG + chr1_3:57926225-57926244 Msa0128260:intron 45.0%
TTGACCCCATCTACTGGAAT+GGG + chr1_3:57926226-57926245 Msa0128260:intron 45.0%
CTTTCCCATTCCAGTAGATG+GGG - chr1_3:57926233-57926252 None:intergenic 45.0%
GCTTTCCCATTCCAGTAGAT+GGG - chr1_3:57926234-57926253 None:intergenic 45.0%
TCTATGTAGGGGGTAGGAAT+AGG + chr1_3:57926291-57926310 Msa0128260:intron 45.0%
GCAGTAAGAAGTCAGGGTTT+CGG - chr1_3:57926504-57926523 None:intergenic 45.0%
CAGCATGCAGTAAGAAGTCA+GGG - chr1_3:57926510-57926529 None:intergenic 45.0%
ACAGCATGCAGTAAGAAGTC+AGG - chr1_3:57926511-57926530 None:intergenic 45.0%
ACTTCTTACTGCATGCTGTG+AGG + chr1_3:57926512-57926531 Msa0128260:CDS 45.0%
!!! TGCTTTTTCCCCTAACCTGA+AGG + chr1_3:57926813-57926832 Msa0128260:intron 45.0%
! TGGCATCGAAAATATGAGGC+AGG - chr1_3:57926862-57926881 None:intergenic 45.0%
CACTATGTTAACGATGCCTC+TGG + chr1_3:57927053-57927072 Msa0128260:intron 45.0%
ACACAACCAGGAATTGTGCT+TGG + chr1_3:57927403-57927422 Msa0128260:CDS 45.0%
TCTAGTGAATGACAGGTGGA+TGG + chr1_3:57927733-57927752 Msa0128260:intron 45.0%
AATGACAGGTGGATGGTGAT+CGG + chr1_3:57927740-57927759 Msa0128260:intron 45.0%
AAAATTCCTCTGCCCTCTGT+GGG + chr1_3:57927763-57927782 Msa0128260:CDS 45.0%
CAGGATTCTGTATCTACAGC+AGG + chr1_3:57927787-57927806 Msa0128260:CDS 45.0%
GGATTCTGTATCTACAGCAG+GGG + chr1_3:57927789-57927808 Msa0128260:CDS 45.0%
CTGACACGCAAATCACACAA+AGG - chr1_3:57928039-57928058 None:intergenic 45.0%
! AAAGAAGCACAAGGTGTGCA+AGG - chr1_3:57928286-57928305 None:intergenic 45.0%
AATTACCACTGTTGTCGGAC+AGG + chr1_3:57928535-57928554 Msa0128260:intron 45.0%
ACAAAAACGACGAGAAGCAG+AGG + chr1_3:57928560-57928579 Msa0128260:CDS 45.0%
CAGACCAAAATGAATGGCTC+AGG - chr1_3:57928622-57928641 None:intergenic 45.0%
CTGCTGTCACACAGGAATAA+AGG - chr1_3:57928783-57928802 None:intergenic 45.0%
CTTTATTCCTGTGTGACAGC+AGG + chr1_3:57928781-57928800 Msa0128260:three_prime_UTR 45.0%
CATAAATCCTGCTGTCACAC+AGG - chr1_3:57928791-57928810 None:intergenic 45.0%
CAGCGGGAACAACTATTTCA+TGG - chr1_3:57928833-57928852 None:intergenic 45.0%
CATGAAATAGTTGTTCCCGC+TGG + chr1_3:57928831-57928850 Msa0128260:three_prime_UTR 45.0%
AAACCCAACCAATCAACCAG+CGG - chr1_3:57928850-57928869 None:intergenic 45.0%
!! TTGAATAAATAAATTAATTA+AGG - chr1_3:57926709-57926728 None:intergenic 5.0%
GTCGCTGTTGTCGTTGTACA+TGG - chr1_3:57923832-57923851 None:intergenic 50.0%
AGAAGAAGACGTGAATCGCC+AGG + chr1_3:57923875-57923894 Msa0128260:CDS 50.0%
AGAATGACCGTTGCTGATCC+CGG + chr1_3:57923960-57923979 Msa0128260:CDS 50.0%
TCGCCGGTAACTTCATTTCC+GGG - chr1_3:57923981-57924000 None:intergenic 50.0%
CTCGCCGGTAACTTCATTTC+CGG - chr1_3:57923982-57924001 None:intergenic 50.0%
GGAAATGAAGTTACCGGCGA+GGG + chr1_3:57923981-57924000 Msa0128260:CDS 50.0%
ATTCGGAGTAAAACCCTCGC+CGG - chr1_3:57923997-57924016 None:intergenic 50.0%
TTGCAGGAGGGAGAGATAGA+TGG + chr1_3:57924489-57924508 Msa0128260:intron 50.0%
GAGGGAGAGATAGATGGTAG+TGG + chr1_3:57924495-57924514 Msa0128260:CDS 50.0%
! AGACCTGATGATGCAGAGCT+TGG + chr1_3:57924904-57924923 Msa0128260:CDS 50.0%
TCTCCAAGCTCTGCATCATC+AGG - chr1_3:57924910-57924929 None:intergenic 50.0%
! CATTTAACTTCGGGTGGAGG+AGG - chr1_3:57924982-57925001 None:intergenic 50.0%
! GAGCATTTAACTTCGGGTGG+AGG - chr1_3:57924985-57925004 None:intergenic 50.0%
CTGAACTAGGAGAGGTAGGT+AGG + chr1_3:57925896-57925915 Msa0128260:intron 50.0%
AACTAGGAGAGGTAGGTAGG+AGG + chr1_3:57925899-57925918 Msa0128260:intron 50.0%
GGTCACCGAGAATACTTCTC+TGG + chr1_3:57926014-57926033 Msa0128260:intron 50.0%
CGCTTTCCCATTCCAGTAGA+TGG - chr1_3:57926235-57926254 None:intergenic 50.0%
!! TACTGGAATGGGAAAGCGCT+CGG + chr1_3:57926237-57926256 Msa0128260:intron 50.0%
TGCAGAAGTTCGCAACAGGA+AGG + chr1_3:57926474-57926493 Msa0128260:CDS 50.0%
GGGAGGAAAGCAAAATCCAG+AGG - chr1_3:57927072-57927091 None:intergenic 50.0%
TCAAAAATGAGGGGAGAGGG+AGG - chr1_3:57927089-57927108 None:intergenic 50.0%
GTAACAGGCATGCTGATCCT+GGG - chr1_3:57927433-57927452 None:intergenic 50.0%
TGTAACAGGCATGCTGATCC+TGG - chr1_3:57927434-57927453 None:intergenic 50.0%
AGGATCAGCATGCCTGTTAC+AGG + chr1_3:57927433-57927452 Msa0128260:CDS 50.0%
GAAAATTCCTCTGCCCTCTG+TGG + chr1_3:57927762-57927781 Msa0128260:CDS 50.0%
AAATTCCTCTGCCCTCTGTG+GGG + chr1_3:57927764-57927783 Msa0128260:CDS 50.0%
TCTGCTACTAATGCTGGCAG+TGG + chr1_3:57927829-57927848 Msa0128260:CDS 50.0%
ATTTCCTGCTTCAGCTGGTC+TGG + chr1_3:57928756-57928775 Msa0128260:three_prime_UTR 50.0%
! AGTTGTTCCCGCTGGTTGAT+TGG + chr1_3:57928839-57928858 Msa0128260:three_prime_UTR 50.0%
! TTCCCGCTGGTTGATTGGTT+GGG + chr1_3:57928844-57928863 Msa0128260:three_prime_UTR 50.0%
AACCCAACCAATCAACCAGC+GGG - chr1_3:57928849-57928868 None:intergenic 50.0%
CGACAACAGCGACGACGATA+TGG + chr1_3:57923839-57923858 Msa0128260:CDS 55.0%
AGAAGACGTGAATCGCCAGG+AGG + chr1_3:57923878-57923897 Msa0128260:CDS 55.0%
CGGAAATGAAGTTACCGGCG+AGG + chr1_3:57923980-57923999 Msa0128260:CDS 55.0%
ACCCGTTGTTGCTCTTGCAC+CGG - chr1_3:57924032-57924051 None:intergenic 55.0%
AGCAATGTCACCTGAACCGG+AGG + chr1_3:57924112-57924131 Msa0128260:CDS 55.0%
CTAAGGGGCTGAACTAGGAG+AGG + chr1_3:57925888-57925907 Msa0128260:intron 55.0%
! ACTGCATGCTGTGAGGTACC+AGG + chr1_3:57926519-57926538 Msa0128260:CDS 55.0%
! ACTTCTGGGGGTACACAACC+AGG + chr1_3:57927391-57927410 Msa0128260:CDS 55.0%
! GGAGCACCAAGCACAATTCC+TGG - chr1_3:57927412-57927431 None:intergenic 55.0%
!! GAATTGTGCTTGGTGCTCCC+AGG + chr1_3:57927413-57927432 Msa0128260:CDS 55.0%
! GGTGGTTCTGCTGCAACTAC+AGG + chr1_3:57927567-57927586 Msa0128260:intron 55.0%
GGTTCTGCTGCAACTACAGG+TGG + chr1_3:57927570-57927589 Msa0128260:CDS 55.0%
ACAGAATCCTGCCCCACAGA+GGG - chr1_3:57927778-57927797 None:intergenic 55.0%
TACAGAATCCTGCCCCACAG+AGG - chr1_3:57927779-57927798 None:intergenic 55.0%
TGTTGCCTGTCCGACAACAG+TGG - chr1_3:57928543-57928562 None:intergenic 55.0%
! GTTCCCGCTGGTTGATTGGT+TGG + chr1_3:57928843-57928862 Msa0128260:three_prime_UTR 55.0%
TGACGCCGTCGCTGAACAAG+CGG + chr1_3:57923908-57923927 Msa0128260:CDS 60.0%
CGCCGGTGCAAGAGCAACAA+CGG + chr1_3:57924027-57924046 Msa0128260:CDS 60.0%
GCCGGTGCAAGAGCAACAAC+GGG + chr1_3:57924028-57924047 Msa0128260:CDS 60.0%
GGTGCAAGAGCAACAACGGG+TGG + chr1_3:57924031-57924050 Msa0128260:CDS 60.0%
TGCTGAGAGCGGGGATGTCT+TGG + chr1_3:57925557-57925576 Msa0128260:intron 60.0%
GGGGCTGAACTAGGAGAGGT+AGG + chr1_3:57925892-57925911 Msa0128260:intron 60.0%
AGGACCAGACCAGCTGAAGC+AGG - chr1_3:57928763-57928782 None:intergenic 60.0%
CGGCGTCATCTTGCTCCTCC+TGG - chr1_3:57923896-57923915 None:intergenic 65.0%
CTCCGCCGCTTGTTCAGCGA+CGG - chr1_3:57923916-57923935 None:intergenic 65.0%
CGCCGTCGCTGAACAAGCGG+CGG + chr1_3:57923911-57923930 Msa0128260:CDS 70.0%
CGTCGCTGAACAAGCGGCGG+AGG + chr1_3:57923914-57923933 Msa0128260:CDS 70.0%
TCCTCTGCCCTCTGTGGGGC+AGG + chr1_3:57927768-57927787 Msa0128260:CDS 70.0%
TCCTGCCCCACAGAGGGCAG+AGG - chr1_3:57927772-57927791 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57923574 57929006 57923574 ID=Msa0128260;Name=Msa0128260
chr1_3 mRNA 57923574 57929006 57923574 ID=Msa0128260-mRNA-1;Parent=Msa0128260;Name=Msa0128260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=212|1|1|1|1|1|8|383|423
chr1_3 exon 57923574 57924133 57923574 ID=Msa0128260-mRNA-1:exon:18505;Parent=Msa0128260-mRNA-1
chr1_3 exon 57924495 57924555 57924495 ID=Msa0128260-mRNA-1:exon:18506;Parent=Msa0128260-mRNA-1
chr1_3 exon 57924782 57925017 57924782 ID=Msa0128260-mRNA-1:exon:18507;Parent=Msa0128260-mRNA-1
chr1_3 exon 57926424 57926625 57926424 ID=Msa0128260-mRNA-1:exon:18508;Parent=Msa0128260-mRNA-1
chr1_3 exon 57927317 57927454 57927317 ID=Msa0128260-mRNA-1:exon:18509;Parent=Msa0128260-mRNA-1
chr1_3 exon 57927568 57927668 57927568 ID=Msa0128260-mRNA-1:exon:18510;Parent=Msa0128260-mRNA-1
chr1_3 exon 57927748 57927866 57927748 ID=Msa0128260-mRNA-1:exon:18511;Parent=Msa0128260-mRNA-1
chr1_3 exon 57928557 57929006 57928557 ID=Msa0128260-mRNA-1:exon:18512;Parent=Msa0128260-mRNA-1
chr1_3 five_prime_UTR 57923574 57923785 57923574 ID=Msa0128260-mRNA-1:five_prime_utr;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57923786 57924133 57923786 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57924495 57924555 57924495 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57924782 57925017 57924782 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57926424 57926625 57926424 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57927317 57927454 57927317 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57927568 57927668 57927568 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57927748 57927866 57927748 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 CDS 57928557 57928623 57928557 ID=Msa0128260-mRNA-1:cds;Parent=Msa0128260-mRNA-1
chr1_3 three_prime_UTR 57928624 57929006 57928624 ID=Msa0128260-mRNA-1:three_prime_utr;Parent=Msa0128260-mRNA-1
Gene Sequence

>Msa0128260

ATGGCATCAAAGAAGAAACAATCGGAAGGAATCGCTTTGTTATCCATGTACAACGACAACAGCGACGACGATATGGAAGACGCTGAAGAAGAAGAAGACGTGAATCGCCAGGAGGAGCAAGATGACGCCGTCGCTGAACAAGCGGCGGAGGAAGATTTGACTGCCGATACGGATAGAATGACCGTTGCTGATCCCGGAAATGAAGTTACCGGCGAGGGTTTTACTCCGAATAGATTGTTTTCGCCGGTGCAAGAGCAACAACGGGTGGAATTGAAGATTAGTAAGAGTGCCACGCTTACGATAGTTGATTATGGTCATGATGAAGTAGCAATGTCACCTGAACCGGAGGAGGGAGAGATAGATGGTAGTGGTAGAGTTATGTTTGGGGACCAACATCATGTAACCAATGGCGATTTGCTAGATAGAACATCATCAGGAACAGCACAAATTTTGACACCTAACAATCAAGCTAACACTCCCCAATTTTCGGAGACATTGAAATCTGATACCGTGAATAATGACGATGTGATTAGACCTGATGATGCAGAGCTTGGAGAAGCAGATCAAGATGAGCATAAATCTGAAGATCCATTGGATAAATTTCTTCCTCCTCCACCCGAAGTTAAATGCTCAGAGGAGCTACAAAGAAAAATAAATAAATTTCTGGAGTATAAGAAGGCAGGAAAAAGTTTTAATGCAGAAGTTCGCAACAGGAAGGACTACCGAAACCCTGACTTCTTACTGCATGCTGTGAGGTACCAGGATATTGATCAAATAGGGTCTTGTTTCAGTAAAGATGTATTTGATCCTCATGGATATGATTCAAGTGACTTTTATGATCAAATAGAAGCTGATATGAGGCGAGAAAGTGATAGGAAAGAGCAAGAAAAGAAGAAAGCACAGAACCAAAAGGTTGATTTTACTTCTGGGGGTACACAACCAGGAATTGTGCTTGGTGCTCCCAGGATCAGCATGCCTGTTACAGGTGGTTCTGCTGCAACTACAGGTGGTTTGCATTTGGTGCCTCCTACAGCTGATTCTATTAATCGAGATGGTAGACAGAATAAAAAATCAAAATGGGATAAGGTGGATGGTGATCGGAAAATTCCTCTGCCCTCTGTGGGGCAGGATTCTGTATCTACAGCAGGGGCTCATGCAGCAGTGTTATCTGCTACTAATGCTGGCAGTGGATACATGCTATTTGCGCAACAAAAACGACGAGAAGCAGAGGAGAGAAGATCTAGTGAAAGGAGGTTGGAGAGAAGATCCTGA

Protein sequence

>Msa0128260

MASKKKQSEGIALLSMYNDNSDDDMEDAEEEEDVNRQEEQDDAVAEQAAEEDLTADTDRMTVADPGNEVTGEGFTPNRLFSPVQEQQRVELKISKSATLTIVDYGHDEVAMSPEPEEGEIDGSGRVMFGDQHHVTNGDLLDRTSSGTAQILTPNNQANTPQFSETLKSDTVNNDDVIRPDDAELGEADQDEHKSEDPLDKFLPPPPEVKCSEELQRKINKFLEYKKAGKSFNAEVRNRKDYRNPDFLLHAVRYQDIDQIGSCFSKDVFDPHGYDSSDFYDQIEADMRRESDRKEQEKKKAQNQKVDFTSGGTQPGIVLGAPRISMPVTGGSAATTGGLHLVPPTADSINRDGRQNKKSKWDKVDGDRKIPLPSVGQDSVSTAGAHAAVLSATNAGSGYMLFAQQKRREAEERRSSERRLERRS*