Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129680 | sp|Q05046|CH62_CUCMA | 92.566 | 565 | 42 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1058 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129680 | Q1RSH3 | 99.477 | 574 | 3 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129660 | Msa0129680 | 0.821257 | 4.445585e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129680 | MtrunA17_Chr1g0196761 | 99.477 | 574 | 3 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1147 |
| Msa0129680 | MtrunA17_Chr1g0196751 | 95.018 | 562 | 28 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1080 |
| Msa0129680 | MtrunA17_Chr8g0342341 | 70.833 | 576 | 166 | 2 | 1 | 574 | 1 | 576 | 0.0 | 803 |
| Msa0129680 | MtrunA17_Chr1g0152151 | 47.664 | 535 | 274 | 4 | 34 | 564 | 47 | 579 | 1.84e-167 | 488 |
| Msa0129680 | MtrunA17_Chr1g0152141 | 47.477 | 535 | 275 | 4 | 34 | 564 | 47 | 579 | 5.38e-167 | 487 |
| Msa0129680 | MtrunA17_Chr4g0028601 | 45.537 | 549 | 287 | 5 | 19 | 558 | 28 | 573 | 1.25e-158 | 466 |
| Msa0129680 | MtrunA17_Chr4g0043731 | 40.850 | 541 | 313 | 6 | 33 | 569 | 40 | 577 | 7.28e-136 | 407 |
| Msa0129680 | MtrunA17_Chr5g0421251 | 44.201 | 457 | 252 | 2 | 47 | 501 | 52 | 507 | 5.81e-135 | 403 |
| Msa0129680 | MtrunA17_Chr7g0272821 | 24.429 | 569 | 325 | 22 | 40 | 562 | 16 | 525 | 1.23e-14 | 76.6 |
| Msa0129680 | MtrunA17_Chr7g0241881 | 24.077 | 569 | 327 | 22 | 40 | 562 | 16 | 525 | 8.18e-14 | 74.3 |
| Msa0129680 | MtrunA17_Chr3g0126151 | 91.892 | 37 | 3 | 0 | 142 | 178 | 1 | 37 | 1.10e-13 | 68.6 |
| Msa0129680 | MtrunA17_Chr1g0212541 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 1.57e-13 | 65.5 |
| Msa0129680 | MtrunA17_Chr4g0019131 | 91.667 | 36 | 3 | 0 | 142 | 177 | 1 | 36 | 2.93e-13 | 65.5 |
| Msa0129680 | MtrunA17_Chr7g0238391 | 86.486 | 37 | 5 | 0 | 142 | 178 | 1 | 37 | 3.81e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129680 | AT3G23990.1 | 90.231 | 563 | 54 | 1 | 1 | 563 | 1 | 562 | 0.0 | 1027 |
| Msa0129680 | AT2G33210.1 | 86.879 | 564 | 74 | 0 | 1 | 564 | 1 | 564 | 0.0 | 998 |
| Msa0129680 | AT2G33210.2 | 86.170 | 564 | 73 | 1 | 1 | 564 | 1 | 559 | 0.0 | 983 |
| Msa0129680 | AT3G13860.1 | 72.826 | 552 | 147 | 2 | 22 | 572 | 21 | 570 | 0.0 | 810 |
| Msa0129680 | AT5G56500.2 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 7.57e-172 | 500 |
| Msa0129680 | AT5G56500.1 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 7.57e-172 | 500 |
| Msa0129680 | AT3G13470.1 | 46.984 | 547 | 282 | 5 | 33 | 574 | 51 | 594 | 5.75e-165 | 483 |
| Msa0129680 | AT1G55490.5 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 2.83e-164 | 481 |
| Msa0129680 | AT1G55490.1 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 2.83e-164 | 481 |
| Msa0129680 | AT1G55490.3 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 2.83e-164 | 481 |
| Msa0129680 | AT1G55490.4 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 2.83e-164 | 481 |
| Msa0129680 | AT1G55490.2 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 2.83e-164 | 481 |
| Msa0129680 | AT1G26230.1 | 43.284 | 536 | 298 | 4 | 33 | 564 | 39 | 572 | 5.63e-156 | 460 |
| Msa0129680 | AT2G28000.1 | 44.697 | 528 | 288 | 3 | 28 | 553 | 42 | 567 | 3.36e-155 | 457 |
| Msa0129680 | AT1G26230.4 | 43.907 | 517 | 286 | 3 | 50 | 564 | 6 | 520 | 5.65e-155 | 456 |
| Msa0129680 | AT1G26230.3 | 44.055 | 513 | 283 | 3 | 54 | 564 | 2 | 512 | 1.17e-154 | 455 |
| Msa0129680 | AT1G26230.2 | 43.008 | 472 | 264 | 3 | 33 | 500 | 39 | 509 | 3.68e-137 | 410 |
| Msa0129680 | AT5G18820.1 | 39.444 | 540 | 321 | 4 | 34 | 569 | 35 | 572 | 3.55e-123 | 375 |
| Msa0129680 | AT1G26230.5 | 43.210 | 405 | 227 | 2 | 33 | 435 | 39 | 442 | 1.05e-119 | 362 |
| Msa0129680 | AT5G18820.2 | 38.412 | 466 | 282 | 3 | 108 | 569 | 2 | 466 | 3.05e-99 | 310 |
| Msa0129680 | AT5G18820.3 | 38.259 | 379 | 233 | 1 | 34 | 412 | 35 | 412 | 3.85e-82 | 264 |
| Msa0129680 | AT5G20890.1 | 23.199 | 569 | 332 | 21 | 40 | 562 | 16 | 525 | 6.41e-13 | 71.6 |
Find 169 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCCTTGGTTGCATTTA+AGG | 0.066385 | 1_3:+59736703 | None:intergenic |
| GGAACAATTCCTTAATATTT+TGG | 0.096358 | 1_3:+59735599 | None:intergenic |
| GAAAGATTGGCCAAGCTTTC+TGG | 0.129629 | 1_3:-59736898 | Msa0129680:CDS |
| AATTATCCAAAACGCTTTAA+AGG | 0.167858 | 1_3:-59736494 | Msa0129680:intron |
| GTTAAGAACATACACATTTC+TGG | 0.206681 | 1_3:+59738294 | None:intergenic |
| AGAAGCAGCTTCTAGGGTTT+AGG | 0.243576 | 1_3:+59740442 | None:intergenic |
| GCGATCAAAGCCCCTGGTTT+TGG | 0.249647 | 1_3:-59737507 | Msa0129680:CDS |
| TAAGCTTCGTGCTGGAATTA+AGG | 0.250806 | 1_3:-59737637 | Msa0129680:intron |
| CAATTCATTCCAAAATATTA+AGG | 0.253245 | 1_3:-59735608 | Msa0129680:three_prime_UTR |
| CAGGATCTCGCTGTTCTTAC+AGG | 0.260673 | 1_3:-59737462 | Msa0129680:CDS |
| CACGCCAAATTTGATCTCTT+TGG | 0.262496 | 1_3:+59739819 | None:intergenic |
| GAAGCAGCTTCTAGGGTTTA+GGG | 0.266480 | 1_3:+59740443 | None:intergenic |
| GGAGCATCTTTATCTTCTTT+TGG | 0.274868 | 1_3:+59735829 | None:intergenic |
| GCTGCCAAAGAGATCAAATT+TGG | 0.276119 | 1_3:-59739823 | Msa0129680:CDS |
| AACACACCTTTAAAGCGTTT+TGG | 0.279175 | 1_3:+59736488 | None:intergenic |
| CTTTGGTCCTTGCATATTCA+TGG | 0.307077 | 1_3:-59735440 | Msa0129680:three_prime_UTR |
| CTCTAGAAGAAGCAGCTTCT+AGG | 0.310007 | 1_3:+59740435 | None:intergenic |
| GCTAATGGGGATAGAGAAAT+TGG | 0.310768 | 1_3:-59738653 | Msa0129680:CDS |
| GGCTCGTGCTTTGATGCTTA+AGG | 0.319494 | 1_3:-59739794 | Msa0129680:CDS |
| TGTTGTTGTTGGTAAACTTT+TGG | 0.322472 | 1_3:-59736241 | Msa0129680:CDS |
| AGTATTAGAGTTAGCTTTGA+AGG | 0.325433 | 1_3:-59737813 | Msa0129680:intron |
| ATTTGATGCTCATCAACCTT+TGG | 0.340263 | 1_3:-59735457 | Msa0129680:three_prime_UTR |
| TTCTGGTTTGTTATGAAATA+CGG | 0.342174 | 1_3:+59738320 | None:intergenic |
| AAGAATGACAGTGTCATCTT+TGG | 0.342488 | 1_3:+59737140 | None:intergenic |
| GATGACACTGTCATTCTTGA+TGG | 0.343288 | 1_3:-59737135 | Msa0129680:CDS |
| TTGATCCATTGAAGGTGATT+AGG | 0.344579 | 1_3:-59736009 | Msa0129680:CDS |
| TATGATGTAGTTGAAACATT+TGG | 0.346780 | 1_3:-59735645 | Msa0129680:three_prime_UTR |
| TGGAGGAGTTGCAGTGCTTA+AGG | 0.349238 | 1_3:-59736878 | Msa0129680:intron |
| AAATGTTTCAACTACATCAT+AGG | 0.356489 | 1_3:+59735647 | None:intergenic |
| ATACACATTTCTGGTTCTTC+TGG | 0.367623 | 1_3:+59738303 | None:intergenic |
| GAACAGGATAATCCTGATCT+TGG | 0.368234 | 1_3:-59736219 | Msa0129680:CDS |
| ATTAGGTGAATATGTTGATA+TGG | 0.372412 | 1_3:-59736047 | Msa0129680:intron |
| TTTGGGGAAAACAGGAAATC+TGG | 0.375733 | 1_3:-59737489 | Msa0129680:CDS |
| ATTGATGACTTACCGAGCTT+TGG | 0.376430 | 1_3:+59740275 | None:intergenic |
| AATGTTCGGTTCTTGCAAAA+AGG | 0.380948 | 1_3:-59737297 | Msa0129680:intron |
| ACTCTTTCTTATTTGACATA+AGG | 0.387606 | 1_3:-59735730 | Msa0129680:three_prime_UTR |
| TTGGCACAATATCTGCTAAT+GGG | 0.388899 | 1_3:-59738667 | Msa0129680:CDS |
| GGCTGAAGTTGGTGAGAAAA+AGG | 0.389181 | 1_3:-59736741 | Msa0129680:CDS |
| TGCTCCTGCCATGCCTGGTA+TGG | 0.389510 | 1_3:-59735812 | Msa0129680:CDS |
| GCTCGTGCTTTGATGCTTAA+GGG | 0.392668 | 1_3:-59739793 | Msa0129680:CDS |
| TGCTAGGAGCAACGCTAATC+AGG | 0.394183 | 1_3:-59739983 | Msa0129680:intron |
| CTCACCAACTTCAGCCTCAC+TGG | 0.395856 | 1_3:+59736748 | None:intergenic |
| GTTGGCACAATATCTGCTAA+TGG | 0.396523 | 1_3:-59738668 | Msa0129680:CDS |
| TATGTTGATATGGTTAAATC+TGG | 0.397957 | 1_3:-59736037 | Msa0129680:CDS |
| AAAGTTGATCTTGAAATGTT+CGG | 0.399954 | 1_3:-59737311 | Msa0129680:CDS |
| CACTTCTGAAGAAATTGCTC+AGG | 0.402357 | 1_3:-59738790 | Msa0129680:intron |
| GCCCTCCTCTACAGCTGCCT+TGG | 0.403912 | 1_3:+59736691 | None:intergenic |
| CCTGAGGCGAGGTATAAATA+TGG | 0.408456 | 1_3:-59738862 | Msa0129680:CDS |
| GGCTAAGAGCATTGAATTCA+AGG | 0.411181 | 1_3:-59739407 | Msa0129680:CDS |
| CTGTAAGAACAGCGAGATCC+TGG | 0.413061 | 1_3:+59737463 | None:intergenic |
| GTAGAGGGTGCTGTTGTTGT+TGG | 0.422645 | 1_3:-59736252 | Msa0129680:CDS |
| TCTAGAAGAAGCAGCTTCTA+GGG | 0.431953 | 1_3:+59740436 | None:intergenic |
| TTCTTTGCCAACTTTCTCCA+TGG | 0.436356 | 1_3:+59738613 | None:intergenic |
| AAATGAGAAAATTGAATTGA+AGG | 0.437715 | 1_3:+59740343 | None:intergenic |
| AAGGATAAAGTCAAGAATAT+CGG | 0.438011 | 1_3:-59739388 | Msa0129680:CDS |
| TCCTCAGCAACAATCAATAA+AGG | 0.438194 | 1_3:+59737696 | None:intergenic |
| AAGATTCATGCCAAGCTCTT+CGG | 0.445204 | 1_3:+59737337 | None:intergenic |
| GATGACTTACCGAGCTTTGG+AGG | 0.447733 | 1_3:+59740278 | None:intergenic |
| GTACATGGTGTGGTTGGAAT+TGG | 0.451052 | 1_3:+59740320 | None:intergenic |
| TGCAACCTGCTTTACTAGAC+TGG | 0.457958 | 1_3:+59739363 | None:intergenic |
| ATCCTTCTGTAAATATTGCC+CGG | 0.473428 | 1_3:+59738919 | None:intergenic |
| AATGAGTTGGAAGTTGTTGA+AGG | 0.477205 | 1_3:-59738371 | Msa0129680:CDS |
| TGCAACTCCTCCAGAAAGCT+TGG | 0.478495 | 1_3:+59736888 | None:intergenic |
| GCGGTCCTAATCACCTTCAA+TGG | 0.479235 | 1_3:+59736004 | None:intergenic |
| CCGCCTTGGTTGACGCAGCC+AGG | 0.479827 | 1_3:-59735985 | Msa0129680:intron |
| GCCCCTAAAGTGACAAAAGA+TGG | 0.479995 | 1_3:-59739439 | Msa0129680:CDS |
| TTTGAGTTGAAAATTTATGA+AGG | 0.485108 | 1_3:+59735577 | None:intergenic |
| TGTTGCATAGATTGGAAGTA+GGG | 0.486042 | 1_3:-59739866 | Msa0129680:intron |
| GCTCCTGCCATGCCTGGTAT+GGG | 0.490109 | 1_3:-59735811 | Msa0129680:CDS |
| GCGGCATCGTAACCAAGATC+AGG | 0.490844 | 1_3:+59736207 | None:intergenic |
| TGGAATAATTGATCCATTGA+AGG | 0.491715 | 1_3:-59736017 | Msa0129680:CDS |
| ATGGAGAAAGTTGGCAAAGA+AGG | 0.492043 | 1_3:-59738611 | Msa0129680:CDS |
| TCTTCTCGTGGATTATAATG+AGG | 0.495313 | 1_3:+59737864 | None:intergenic |
| CTTCTCGTGGATTATAATGA+GGG | 0.495517 | 1_3:+59737865 | None:intergenic |
| CAAGACATTGCAAAATGAGT+TGG | 0.496144 | 1_3:-59738384 | Msa0129680:CDS |
| CTTAGTTACCTTAGGACCCA+TGG | 0.497517 | 1_3:+59739738 | None:intergenic |
| AAAGATGCTCCTGCCATGCC+TGG | 0.497620 | 1_3:-59735817 | Msa0129680:CDS |
| AAACAGGAAATCTGGTCTCC+AGG | 0.499170 | 1_3:-59737481 | Msa0129680:CDS |
| AATTGAGGAAAGATGTGAGC+AGG | 0.500933 | 1_3:-59737094 | Msa0129680:intron |
| TTGAAGCACCACTCCAATCC+AGG | 0.502333 | 1_3:+59735760 | None:intergenic |
| TAAAGTAACCATGGGTCCTA+AGG | 0.503309 | 1_3:-59739746 | Msa0129680:intron |
| GCCTCTGTTAATTTCCAAGT+TGG | 0.505067 | 1_3:-59735550 | Msa0129680:three_prime_UTR |
| CATGCCTGGTATGGGTGGTA+TGG | 0.507454 | 1_3:-59735803 | Msa0129680:CDS |
| AATCTCTCACTATGATTACA+TGG | 0.520442 | 1_3:+59735704 | None:intergenic |
| GGATGCAAATCAGTTGCAGC+TGG | 0.520565 | 1_3:-59738900 | Msa0129680:CDS |
| CAAGGAACACTGACCTTTGG+CGG | 0.520960 | 1_3:+59736188 | None:intergenic |
| ATTGATTGTTGCTGAGGATG+TGG | 0.521979 | 1_3:-59737691 | Msa0129680:CDS |
| TTTGCTCAATCACCACGTTA+CGG | 0.522654 | 1_3:+59739470 | None:intergenic |
| TGATGAAGCAAAACGGTACA+TGG | 0.524897 | 1_3:+59740305 | None:intergenic |
| TTCTTCTGAAAGGACCAACT+TGG | 0.525083 | 1_3:+59735536 | None:intergenic |
| TTAAAACAGCTTCTTCTGAA+AGG | 0.526747 | 1_3:+59735526 | None:intergenic |
| GCTGCTATGAAGACCTGGAT+TGG | 0.526870 | 1_3:-59735773 | Msa0129680:three_prime_UTR |
| ACTTGATTTATGAAGATTGG+AGG | 0.528207 | 1_3:-59736773 | Msa0129680:intron |
| GAGAGATTAAAGCTGTAGGT+AGG | 0.529683 | 1_3:-59735689 | Msa0129680:three_prime_UTR |
| CGGTGCCAGTCTAGTAAAGC+AGG | 0.529927 | 1_3:-59739368 | Msa0129680:CDS |
| GTAGAGGAGGGCATAGTACC+TGG | 0.531895 | 1_3:-59736680 | Msa0129680:intron |
| CTTGTGCTACAGTTCTTACC+CGG | 0.535613 | 1_3:-59738938 | Msa0129680:CDS |
| GAAGGTGATTAGGACCGCCT+TGG | 0.537650 | 1_3:-59735999 | Msa0129680:CDS |
| ACCATCACCAGCCACATCAT+TGG | 0.538003 | 1_3:+59739333 | None:intergenic |
| ACCTTTATTGATTGTTGCTG+AGG | 0.539398 | 1_3:-59737697 | Msa0129680:CDS |
| ATTCTAAATAAGCTTCGTGC+TGG | 0.540824 | 1_3:-59737645 | Msa0129680:CDS |
| TGCAACCAAGGCAGCTGTAG+AGG | 0.541405 | 1_3:-59736696 | Msa0129680:CDS |
| TTGAGTTGAAAATTTATGAA+GGG | 0.541796 | 1_3:+59735578 | None:intergenic |
| CAGCTTATCACCGAAGAGCT+TGG | 0.542247 | 1_3:-59737347 | Msa0129680:CDS |
| ATTGTTTGCAATAGTAATTG+TGG | 0.543118 | 1_3:-59735398 | Msa0129680:three_prime_UTR |
| ATTTAGAATAAGAGTTGCAA+GGG | 0.543816 | 1_3:+59737659 | None:intergenic |
| GCAAAAGCCATGGAGAAAGT+TGG | 0.544162 | 1_3:-59738620 | Msa0129680:CDS |
| GCATCAAATGCTGGAGTAGA+GGG | 0.546345 | 1_3:-59736267 | Msa0129680:CDS |
| GTGTTGCATAGATTGGAAGT+AGG | 0.549231 | 1_3:-59739867 | Msa0129680:intron |
| ACTGTCATTCTTGATGGAGC+TGG | 0.549742 | 1_3:-59737129 | Msa0129680:CDS |
| TATTTAGAATAAGAGTTGCA+AGG | 0.553538 | 1_3:+59737658 | None:intergenic |
| CATACAATTGCATCAAATGC+TGG | 0.554740 | 1_3:-59736276 | Msa0129680:CDS |
| TGCATCAAATGCTGGAGTAG+AGG | 0.557397 | 1_3:-59736268 | Msa0129680:CDS |
| TCCTTCTGTAAATATTGCCC+GGG | 0.560443 | 1_3:+59738920 | None:intergenic |
| CCACCCATACCAGGCATGGC+AGG | 0.565885 | 1_3:+59735808 | None:intergenic |
| GTGGTGATTGAGCAAAGCTT+TGG | 0.566454 | 1_3:-59739463 | Msa0129680:CDS |
| AGATTGGAAGTAGGGTGGCA+TGG | 0.567170 | 1_3:-59739858 | Msa0129680:CDS |
| CATCACTTGCCTCCAAAGCT+CGG | 0.570155 | 1_3:-59740287 | Msa0129680:intron |
| CATGAATATGCAAGGACCAA+AGG | 0.572024 | 1_3:+59735441 | None:intergenic |
| CCTGCCATGCCTGGTATGGG+TGG | 0.574287 | 1_3:-59735808 | Msa0129680:CDS |
| ACCAATGATGTGGCTGGTGA+TGG | 0.577314 | 1_3:-59739334 | Msa0129680:intron |
| TGAGTTAATTGCAAAAGCCA+TGG | 0.577983 | 1_3:-59738630 | Msa0129680:CDS |
| CCATATTTATACCTCGCCTC+AGG | 0.579496 | 1_3:+59738862 | None:intergenic |
| TGGTGATAAGAAATCAATTG+AGG | 0.584040 | 1_3:-59737109 | Msa0129680:CDS |
| TAGTGAGAGATTAAAGCTGT+AGG | 0.584980 | 1_3:-59735693 | Msa0129680:three_prime_UTR |
| AACCAAGGCAGCTGTAGAGG+AGG | 0.586821 | 1_3:-59736693 | Msa0129680:CDS |
| CTTGGTTACGATGCCGCCAA+AGG | 0.591473 | 1_3:-59736201 | Msa0129680:intron |
| ACCCGGGCAATATTTACAGA+AGG | 0.591917 | 1_3:-59738921 | Msa0129680:CDS |
| AGGCAAGTGATGAAGCAAAA+CGG | 0.600903 | 1_3:+59740298 | None:intergenic |
| CTATCAACCATGAATATGCA+AGG | 0.601322 | 1_3:+59735433 | None:intergenic |
| AAAACGGTACATGGTGTGGT+TGG | 0.603014 | 1_3:+59740314 | None:intergenic |
| TTCTCGTGGATTATAATGAG+GGG | 0.603485 | 1_3:+59737866 | None:intergenic |
| TATTAGCTGCTATGAAGACC+TGG | 0.606746 | 1_3:-59735778 | Msa0129680:exon |
| GTATGCGCGATCAAAGCCCC+TGG | 0.606996 | 1_3:-59737513 | Msa0129680:CDS |
| TGAGGCAGTTAAAGTAACCA+TGG | 0.610661 | 1_3:-59739755 | Msa0129680:CDS |
| TAGTCCATACCACCCATACC+AGG | 0.615608 | 1_3:+59735799 | None:intergenic |
| GGGTGTTGAAGAACTTGCTG+AGG | 0.617007 | 1_3:-59739773 | Msa0129680:CDS |
| GGTAAGAACTGTAGCACAAG+TGG | 0.617248 | 1_3:+59738941 | None:intergenic |
| CTACCTGGCTGCGTCAACCA+AGG | 0.618790 | 1_3:+59735982 | None:intergenic |
| GGAGCCAGTGAGGCTGAAGT+TGG | 0.619289 | 1_3:-59736752 | Msa0129680:CDS |
| ACCAAGGCAGCTGTAGAGGA+GGG | 0.620345 | 1_3:-59736692 | Msa0129680:CDS |
| TGGCACAATATCTGCTAATG+GGG | 0.620505 | 1_3:-59738666 | Msa0129680:CDS |
| TTTGATGCAATTGTATGCAC+AGG | 0.621753 | 1_3:+59736282 | None:intergenic |
| GAGGCAGTTAAAGTAACCAT+GGG | 0.626223 | 1_3:-59739754 | Msa0129680:CDS |
| AATGCTACCAATGATGTGGC+TGG | 0.626483 | 1_3:-59739340 | Msa0129680:CDS |
| AATTCATCTACAGATTAGGT+CGG | 0.630754 | 1_3:-59736965 | Msa0129680:intron |
| TTTGTTACCACAGGAACTCG+AGG | 0.635926 | 1_3:-59737891 | Msa0129680:intron |
| AGAGATCAAATTTGGCGTGG+AGG | 0.637900 | 1_3:-59739815 | Msa0129680:CDS |
| AGATGCCTTAAATGCAACCA+AGG | 0.645500 | 1_3:-59736708 | Msa0129680:CDS |
| AGATTGGCCAAGCTTTCTGG+AGG | 0.646303 | 1_3:-59736895 | Msa0129680:CDS |
| TGCAGCTGGAATGAATGCAA+TGG | 0.646496 | 1_3:-59738886 | Msa0129680:CDS |
| CATACCACCCATACCAGGCA+TGG | 0.647057 | 1_3:+59735804 | None:intergenic |
| AATACGGAGAAATGTAGCCT+CGG | 0.653427 | 1_3:+59738336 | None:intergenic |
| AAGCAAAACGGTACATGGTG+TGG | 0.656782 | 1_3:+59740310 | None:intergenic |
| TTGTGCTACAGTTCTTACCC+GGG | 0.659855 | 1_3:-59738937 | Msa0129680:CDS |
| TGCATAGATTGGAAGTAGGG+TGG | 0.661029 | 1_3:-59739863 | Msa0129680:intron |
| CAAAGAGATCAAATTTGGCG+TGG | 0.667217 | 1_3:-59739818 | Msa0129680:CDS |
| CAAACTTGAAAAGCAGAGCA+CGG | 0.669082 | 1_3:-59738821 | Msa0129680:CDS |
| AATGCAATGGACCTGAGGCG+AGG | 0.674402 | 1_3:-59738873 | Msa0129680:CDS |
| GAATGAATGCAATGGACCTG+AGG | 0.678991 | 1_3:-59738878 | Msa0129680:CDS |
| TGCAAATGCTACCAATGATG+TGG | 0.685010 | 1_3:-59739344 | Msa0129680:CDS |
| TATGAAGACCTGGATTGGAG+TGG | 0.686961 | 1_3:-59735768 | Msa0129680:three_prime_UTR |
| GATCTCGCTGTTCTTACAGG+AGG | 0.694554 | 1_3:-59737459 | Msa0129680:CDS |
| GAAGATTGGAGGAGCCAGTG+AGG | 0.699698 | 1_3:-59736762 | Msa0129680:intron |
| TAGCACTTCAGATTATGACA+AGG | 0.700368 | 1_3:-59736932 | Msa0129680:CDS |
| CCTGGCTGCGTCAACCAAGG+CGG | 0.705423 | 1_3:+59735985 | None:intergenic |
| GAAGGAATGAAGCTTGACCG+AGG | 0.708985 | 1_3:-59738353 | Msa0129680:CDS |
| ACCAACTTGGAAATTAACAG+AGG | 0.716191 | 1_3:+59735549 | None:intergenic |
| GACAAAAGATGGAGTCACTG+TGG | 0.727240 | 1_3:-59739428 | Msa0129680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAAAACAGATATAA+AGG | + | chr1_3:59735953-59735972 | None:intergenic | 10.0% |
| !!! | TTTTTTGAAATTATTCATCT+GGG | - | chr1_3:59735654-59735673 | Msa0129680:three_prime_UTR | 15.0% |
| !! | TTAGAATCATTCAATATAAT+TGG | + | chr1_3:59735807-59735826 | None:intergenic | 15.0% |
| !! | TTAGAAATTAAATCTAAACA+CGG | - | chr1_3:59736686-59736705 | Msa0129680:CDS | 15.0% |
| !! | TTAGAAATTAAATCTAAACA+CGG | - | chr1_3:59736686-59736705 | Msa0129680:CDS | 15.0% |
| !!! | ATTTTTAATTTTGCAATGTT+AGG | - | chr1_3:59737151-59737170 | Msa0129680:CDS | 15.0% |
| !! | TAATCATAATGTAATTAAAG+GGG | + | chr1_3:59737763-59737782 | None:intergenic | 15.0% |
| !! | GTAATCATAATGTAATTAAA+GGG | + | chr1_3:59737764-59737783 | None:intergenic | 15.0% |
| !! | TGTAATCATAATGTAATTAA+AGG | + | chr1_3:59737765-59737784 | None:intergenic | 15.0% |
| !!! | ATCAAATAAAGATTTTAACT+TGG | + | chr1_3:59740371-59740390 | None:intergenic | 15.0% |
| !! | AAATGAGAAAATTGAATTGA+AGG | + | chr1_3:59735501-59735520 | None:intergenic | 20.0% |
| !! | GGATAATTGAAACAAAAAAA+AGG | + | chr1_3:59735600-59735619 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAAATTATTCATC+TGG | - | chr1_3:59735653-59735672 | Msa0129680:three_prime_UTR | 20.0% |
| !! | GTTGTTAAAATGATTGATAA+TGG | - | chr1_3:59735679-59735698 | Msa0129680:three_prime_UTR | 20.0% |
| !!! | AATGTAAATTTTTGTGCTTT+TGG | - | chr1_3:59735826-59735845 | Msa0129680:CDS | 20.0% |
| !! | TTATTCAATCATATTTCAGA+GGG | - | chr1_3:59736240-59736259 | Msa0129680:CDS | 20.0% |
| !! | CATCAACAACAATTAATAAT+GGG | + | chr1_3:59736327-59736346 | None:intergenic | 20.0% |
| !! | TCATCAACAACAATTAATAA+TGG | + | chr1_3:59736328-59736347 | None:intergenic | 20.0% |
| !! | TTCAAAAATATAATCAACCA+TGG | + | chr1_3:59736546-59736565 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCACAGTTGATT+CGG | - | chr1_3:59736568-59736587 | Msa0129680:CDS | 20.0% |
| !!! | ATCTCTAAAATATATACCAA+AGG | + | chr1_3:59736636-59736655 | None:intergenic | 20.0% |
| !!! | ATTTTATACCATTCATTAGT+CGG | + | chr1_3:59736870-59736889 | None:intergenic | 20.0% |
| !! | CTAATGAATGGTATAAAATT+TGG | - | chr1_3:59736871-59736890 | Msa0129680:intron | 20.0% |
| !!! | ATCAAATTTTTAGAGCTAAT+AGG | - | chr1_3:59737081-59737100 | Msa0129680:intron | 20.0% |
| !!! | TTATATGTGTTTTTTTGACT+GGG | - | chr1_3:59737315-59737334 | Msa0129680:CDS | 20.0% |
| !!! | TTGTTTTTTTCTCATTACTT+AGG | - | chr1_3:59738306-59738325 | Msa0129680:intron | 20.0% |
| !! | ATGGTAAAATGAAATCTAAT+AGG | + | chr1_3:59738786-59738805 | None:intergenic | 20.0% |
| !! | ATACATTTATCAGAAATGTT+TGG | + | chr1_3:59739233-59739252 | None:intergenic | 20.0% |
| !!! | CTTAATATTTTGGAATGAAT+TGG | + | chr1_3:59740235-59740254 | None:intergenic | 20.0% |
| !! | CAATTCATTCCAAAATATTA+AGG | - | chr1_3:59740233-59740252 | Msa0129680:intron | 20.0% |
| !!! | TTGAGTTGAAAATTTATGAA+GGG | + | chr1_3:59740266-59740285 | None:intergenic | 20.0% |
| !!! | TTTGAGTTGAAAATTTATGA+AGG | + | chr1_3:59740267-59740286 | None:intergenic | 20.0% |
| !!! | ATAAATTTTCAACTCAAAGA+CGG | - | chr1_3:59740269-59740288 | Msa0129680:intron | 20.0% |
| !!! | TTAATTTGTGTTGCATAGAT+TGG | - | chr1_3:59735967-59735986 | Msa0129680:intron | 25.0% |
| ! | GGTAAATGTAGTAGAATAAA+AGG | - | chr1_3:59736172-59736191 | Msa0129680:intron | 25.0% |
| ! | CTTATTCAATCATATTTCAG+AGG | - | chr1_3:59736239-59736258 | Msa0129680:CDS | 25.0% |
| !!! | ATTACATTTCTCCTGTTTTT+AGG | - | chr1_3:59736347-59736366 | Msa0129680:intron | 25.0% |
| !!! | TTACATTTCTCCTGTTTTTA+GGG | - | chr1_3:59736348-59736367 | Msa0129680:intron | 25.0% |
| ! | AAGGATAAAGTCAAGAATAT+CGG | - | chr1_3:59736453-59736472 | Msa0129680:intron | 25.0% |
| !!! | TAGAGATTTGTTTTATTCCT+AGG | - | chr1_3:59736649-59736668 | Msa0129680:intron | 25.0% |
| !!! | TAGAGATTTGTTTTATTCCT+AGG | - | chr1_3:59736649-59736668 | Msa0129680:intron | 25.0% |
| !! | TTAATTTTGCAATGTTAGGT+TGG | - | chr1_3:59737155-59737174 | Msa0129680:intron | 25.0% |
| ! | GCAAGAATTATCATTAATCT+TGG | - | chr1_3:59737292-59737311 | Msa0129680:intron | 25.0% |
| !!! | GTTATATGTGTTTTTTTGAC+TGG | - | chr1_3:59737314-59737333 | Msa0129680:CDS | 25.0% |
| ! | ATAAGTGGGAAAAAAAGAAA+AGG | + | chr1_3:59737375-59737394 | None:intergenic | 25.0% |
| !!! | TTCTGGTTTGTTATGAAATA+CGG | + | chr1_3:59737524-59737543 | None:intergenic | 25.0% |
| !! | ATTTAGAATAAGAGTTGCAA+GGG | + | chr1_3:59738185-59738204 | None:intergenic | 25.0% |
| !! | TATTTAGAATAAGAGTTGCA+AGG | + | chr1_3:59738186-59738205 | None:intergenic | 25.0% |
| ! | AAAAAAGTAAACCTACAGAT+AGG | + | chr1_3:59738239-59738258 | None:intergenic | 25.0% |
| !! | AAAGTTGATCTTGAAATGTT+CGG | - | chr1_3:59738530-59738549 | Msa0129680:intron | 25.0% |
| !! | AATAATGCACAGTTGAATTT+TGG | - | chr1_3:59738598-59738617 | Msa0129680:CDS | 25.0% |
| ! | TGAAAATTCATCTACAGATT+AGG | - | chr1_3:59738872-59738891 | Msa0129680:CDS | 25.0% |
| ! | TTATGACAAGGAAAAATTAC+AGG | - | chr1_3:59738921-59738940 | Msa0129680:CDS | 25.0% |
| ! | GAAAAACTTGGAATGTTAAT+AGG | + | chr1_3:59739032-59739051 | None:intergenic | 25.0% |
| ! | ATCTTCATAAATCAAGTTTC+AGG | + | chr1_3:59739065-59739084 | None:intergenic | 25.0% |
| ! | GAAACTTGATTTATGAAGAT+TGG | - | chr1_3:59739065-59739084 | Msa0129680:intron | 25.0% |
| ! | TATCATGCTAATAATTTACC+AGG | + | chr1_3:59739182-59739201 | None:intergenic | 25.0% |
| !!! | ATAAATGTATGTTTTTGCAC+AGG | - | chr1_3:59739243-59739262 | Msa0129680:intron | 25.0% |
| !! | TATCTTTTGATCAAAATTGG+CGG | + | chr1_3:59739319-59739338 | None:intergenic | 25.0% |
| !! | ACCTATCTTTTGATCAAAAT+TGG | + | chr1_3:59739322-59739341 | None:intergenic | 25.0% |
| !!! | TTAAAGCGTTTTGGATAATT+TGG | + | chr1_3:59739347-59739366 | None:intergenic | 25.0% |
| ! | AATTATCCAAAACGCTTTAA+AGG | - | chr1_3:59739347-59739366 | Msa0129680:CDS | 25.0% |
| ! | ATTAGGTGAATATGTTGATA+TGG | - | chr1_3:59739794-59739813 | Msa0129680:CDS | 25.0% |
| ! | TATGTTGATATGGTTAAATC+TGG | - | chr1_3:59739804-59739823 | Msa0129680:CDS | 25.0% |
| !! | AGGATATAAAATTTTTGCGT+TGG | - | chr1_3:59739880-59739899 | Msa0129680:intron | 25.0% |
| !! | ACTCTTTCTTATTTGACATA+AGG | - | chr1_3:59740111-59740130 | Msa0129680:intron | 25.0% |
| ! | AAATGTTTCAACTACATCAT+AGG | + | chr1_3:59740197-59740216 | None:intergenic | 25.0% |
| ! | TATGATGTAGTTGAAACATT+TGG | - | chr1_3:59740196-59740215 | Msa0129680:intron | 25.0% |
| !! | GGAACAATTCCTTAATATTT+TGG | + | chr1_3:59740245-59740264 | None:intergenic | 25.0% |
| ! | ATTGTTTGCAATAGTAATTG+TGG | - | chr1_3:59740443-59740462 | Msa0129680:five_prime_UTR | 25.0% |
| TAATTGAGCATTCATTGAGA+TGG | - | chr1_3:59735724-59735743 | Msa0129680:three_prime_UTR | 30.0% | |
| ATCACAAAGCATACAAAAGT+AGG | + | chr1_3:59735777-59735796 | None:intergenic | 30.0% | |
| ! | ACTTTTGTATGCTTTGTGAT+TGG | - | chr1_3:59735777-59735796 | Msa0129680:exon | 30.0% |
| AAATATATACCAAAGGTCCT+TGG | + | chr1_3:59736629-59736648 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTATTCCTAGGATG+TGG | - | chr1_3:59736655-59736674 | Msa0129680:intron | 30.0% |
| TAATATATACACCACATCCT+AGG | + | chr1_3:59736669-59736688 | None:intergenic | 30.0% | |
| ! | ATACCAAAAGTGCACAATAT+CGG | + | chr1_3:59736726-59736745 | None:intergenic | 30.0% |
| TAATATATACACCACATCCT+AGG | + | chr1_3:59736669-59736688 | None:intergenic | 30.0% | |
| TGAATGGTATAAAATTTGGC+AGG | - | chr1_3:59736875-59736894 | Msa0129680:intron | 30.0% | |
| !! | TATAACTTTTGAGCTGTTTC+AGG | - | chr1_3:59737430-59737449 | Msa0129680:intron | 30.0% |
| GTTAAGAACATACACATTTC+TGG | + | chr1_3:59737550-59737569 | None:intergenic | 30.0% | |
| ! | ACTATCGTTGATAGATAACT+AGG | + | chr1_3:59737638-59737657 | None:intergenic | 30.0% |
| TTATCTATCAACGATAGTAG+TGG | - | chr1_3:59737640-59737659 | Msa0129680:CDS | 30.0% | |
| ! | ATCATGTTGCATCTCAATTT+TGG | - | chr1_3:59737666-59737685 | Msa0129680:CDS | 30.0% |
| GACAACGATACAGATAAATA+TGG | + | chr1_3:59737843-59737862 | None:intergenic | 30.0% | |
| TATTTATCTGTATCGTTGTC+AGG | - | chr1_3:59737843-59737862 | Msa0129680:CDS | 30.0% | |
| !! | TATTTGAGATTTTCTTCTCG+TGG | + | chr1_3:59737992-59738011 | None:intergenic | 30.0% |
| !! | AGTATTAGAGTTAGCTTTGA+AGG | - | chr1_3:59738028-59738047 | Msa0129680:intron | 30.0% |
| TGGTGATAAGAAATCAATTG+AGG | - | chr1_3:59738732-59738751 | Msa0129680:intron | 30.0% | |
| ATATCAGAATACGCTAACAA+TGG | + | chr1_3:59738805-59738824 | None:intergenic | 30.0% | |
| AATTCATCTACAGATTAGGT+CGG | - | chr1_3:59738876-59738895 | Msa0129680:CDS | 30.0% | |
| GGAAAAATTACAGGAAAGAT+TGG | - | chr1_3:59738930-59738949 | Msa0129680:CDS | 30.0% | |
| GGTGTTAGTTATGAAAAACT+TGG | + | chr1_3:59739044-59739063 | None:intergenic | 30.0% | |
| ACTTGATTTATGAAGATTGG+AGG | - | chr1_3:59739068-59739087 | Msa0129680:intron | 30.0% | |
| CATTTATCAGAAATGTTTGG+AGG | + | chr1_3:59739230-59739249 | None:intergenic | 30.0% | |
| !! | GCCAATTTTGATCAAAAGAT+AGG | - | chr1_3:59739318-59739337 | Msa0129680:intron | 30.0% |
| CAGATTAAACTCTATATTGC+AGG | + | chr1_3:59739454-59739473 | None:intergenic | 30.0% | |
| ! | AATCTGTCTTTTAGACAGTA+TGG | - | chr1_3:59739468-59739487 | Msa0129680:CDS | 30.0% |
| !! | TGTTGTTGTTGGTAAACTTT+TGG | - | chr1_3:59739600-59739619 | Msa0129680:intron | 30.0% |
| AGACAAGGAAAAAGAAAACA+AGG | + | chr1_3:59739674-59739693 | None:intergenic | 30.0% | |
| !!! | CTTTTTCCTTGTCTTGTTTA+AGG | - | chr1_3:59739680-59739699 | Msa0129680:intron | 30.0% |
| !! | TTGTCAACTATTTTTCTTGC+TGG | - | chr1_3:59739765-59739784 | Msa0129680:CDS | 30.0% |
| !! | TTTCTTGCTGGTTTGTAATT+AGG | - | chr1_3:59739777-59739796 | Msa0129680:CDS | 30.0% |
| TGGAATAATTGATCCATTGA+AGG | - | chr1_3:59739824-59739843 | Msa0129680:CDS | 30.0% | |
| GAATGTTGTACTTTATATGC+AGG | - | chr1_3:59739907-59739926 | Msa0129680:intron | 30.0% | |
| AATCTCTCACTATGATTACA+TGG | + | chr1_3:59740140-59740159 | None:intergenic | 30.0% | |
| TTAAAACAGCTTCTTCTGAA+AGG | + | chr1_3:59740318-59740337 | None:intergenic | 30.0% | |
| !!! | GAGTTGTTTTTGAAGGGAAA+GGG | + | chr1_3:59735436-59735455 | None:intergenic | 35.0% |
| !!! | AGAGTTGTTTTTGAAGGGAA+AGG | + | chr1_3:59735437-59735456 | None:intergenic | 35.0% |
| ! | ATCCTTTTACACACTTCAGA+TGG | - | chr1_3:59735616-59735635 | Msa0129680:three_prime_UTR | 35.0% |
| TAGGTAATCACGAATCAACA+TGG | + | chr1_3:59735758-59735777 | None:intergenic | 35.0% | |
| TGTTGCATAGATTGGAAGTA+GGG | - | chr1_3:59735975-59735994 | Msa0129680:intron | 35.0% | |
| ! | AAGGTTTGCTTAGTTACCTT+AGG | + | chr1_3:59736114-59736133 | None:intergenic | 35.0% |
| GAGATATATAATGCTGATGC+TGG | - | chr1_3:59736194-59736213 | Msa0129680:intron | 35.0% | |
| TTAATATCTTCCAGTCCTAC+AGG | + | chr1_3:59736289-59736308 | None:intergenic | 35.0% | |
| !!! | TCCATCTTTTGTCACTTTAG+GGG | + | chr1_3:59736406-59736425 | None:intergenic | 35.0% |
| !!! | CTCCATCTTTTGTCACTTTA+GGG | + | chr1_3:59736407-59736426 | None:intergenic | 35.0% |
| !!! | ACTCCATCTTTTGTCACTTT+AGG | + | chr1_3:59736408-59736427 | None:intergenic | 35.0% |
| !! | ATGGTAAGCTGTTTTATCCA+TGG | - | chr1_3:59736526-59736545 | Msa0129680:CDS | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCT+AGG | - | chr1_3:59736581-59736600 | Msa0129680:intron | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCA+AGG | - | chr1_3:59736609-59736628 | Msa0129680:intron | 35.0% |
| !! | GTTTTATTCCTAGGATTCCT+AGG | - | chr1_3:59736761-59736780 | Msa0129680:CDS | 35.0% |
| ATCCTTCTGTAAATATTGCC+CGG | + | chr1_3:59736925-59736944 | None:intergenic | 35.0% | |
| TAATAGGCATATTAGCCACA+AGG | - | chr1_3:59737097-59737116 | Msa0129680:CDS | 35.0% | |
| TTGGCACAATATCTGCTAAT+GGG | - | chr1_3:59737174-59737193 | Msa0129680:intron | 35.0% | |
| TGAGTTAATTGCAAAAGCCA+TGG | - | chr1_3:59737211-59737230 | Msa0129680:intron | 35.0% | |
| CAAGACATTGCAAAATGAGT+TGG | - | chr1_3:59737457-59737476 | Msa0129680:CDS | 35.0% | |
| ! | AATGAGTTGGAAGTTGTTGA+AGG | - | chr1_3:59737470-59737489 | Msa0129680:CDS | 35.0% |
| !! | ATACACATTTCTGGTTCTTC+TGG | + | chr1_3:59737541-59737560 | None:intergenic | 35.0% |
| TTTCTAATGCTGCTATGTAG+AGG | + | chr1_3:59737578-59737597 | None:intergenic | 35.0% | |
| AAAGAGCAAAACACAATGAC+TGG | + | chr1_3:59737698-59737717 | None:intergenic | 35.0% | |
| ! | AGTCATTGTGTTTTGCTCTT+TGG | - | chr1_3:59737697-59737716 | Msa0129680:CDS | 35.0% |
| TCATGAGTCATGACAATGTA+TGG | + | chr1_3:59737891-59737910 | None:intergenic | 35.0% | |
| GTGGTAACAAATAGATGTCA+TGG | + | chr1_3:59737941-59737960 | None:intergenic | 35.0% | |
| ! | TGACATCTATTTGTTACCAC+AGG | - | chr1_3:59737941-59737960 | Msa0129680:intron | 35.0% |
| ! | TTCTCGTGGATTATAATGAG+GGG | + | chr1_3:59737978-59737997 | None:intergenic | 35.0% |
| ! | CTTCTCGTGGATTATAATGA+GGG | + | chr1_3:59737979-59737998 | None:intergenic | 35.0% |
| ! | TCTTCTCGTGGATTATAATG+AGG | + | chr1_3:59737980-59737999 | None:intergenic | 35.0% |
| ! | ACCTTTATTGATTGTTGCTG+AGG | - | chr1_3:59738144-59738163 | Msa0129680:intron | 35.0% |
| TCCTCAGCAACAATCAATAA+AGG | + | chr1_3:59738148-59738167 | None:intergenic | 35.0% | |
| ATTCTAAATAAGCTTCGTGC+TGG | - | chr1_3:59738196-59738215 | Msa0129680:intron | 35.0% | |
| !! | GGTTTGTTTTTCCTATCTGT+AGG | - | chr1_3:59738225-59738244 | Msa0129680:intron | 35.0% |
| AATGTTCGGTTCTTGCAAAA+AGG | - | chr1_3:59738544-59738563 | Msa0129680:intron | 35.0% | |
| AAGAATGACAGTGTCATCTT+TGG | + | chr1_3:59738704-59738723 | None:intergenic | 35.0% | |
| TAGCACTTCAGATTATGACA+AGG | - | chr1_3:59738909-59738928 | Msa0129680:CDS | 35.0% | |
| !! | ATAAAAAGCATCAGCAAGCA+AGG | + | chr1_3:59739007-59739026 | None:intergenic | 35.0% |
| !! | AATGTATGTTTTTGCACAGG+TGG | - | chr1_3:59739246-59739265 | Msa0129680:intron | 35.0% |
| ! | TTTTGATCAAAATTGGCGGT+TGG | + | chr1_3:59739315-59739334 | None:intergenic | 35.0% |
| !!! | AACACACCTTTAAAGCGTTT+TGG | + | chr1_3:59739356-59739375 | None:intergenic | 35.0% |
| TTTGATGCAATTGTATGCAC+AGG | + | chr1_3:59739562-59739581 | None:intergenic | 35.0% | |
| CATACAATTGCATCAAATGC+TGG | - | chr1_3:59739565-59739584 | Msa0129680:intron | 35.0% | |
| !!! | TGTTGGTAAACTTTTGGAAC+AGG | - | chr1_3:59739606-59739625 | Msa0129680:intron | 35.0% |
| GAAACTCCTTAAACAAGACA+AGG | + | chr1_3:59739689-59739708 | None:intergenic | 35.0% | |
| TTGATCCATTGAAGGTGATT+AGG | - | chr1_3:59739832-59739851 | Msa0129680:CDS | 35.0% | |
| AAAAAAGCAGCAAGTTAGTC+AGG | + | chr1_3:59739936-59739955 | None:intergenic | 35.0% | |
| !! | GGAGCATCTTTATCTTCTTT+TGG | + | chr1_3:59740015-59740034 | None:intergenic | 35.0% |
| TAGTGAGAGATTAAAGCTGT+AGG | - | chr1_3:59740148-59740167 | Msa0129680:intron | 35.0% | |
| ACCAACTTGGAAATTAACAG+AGG | + | chr1_3:59740295-59740314 | None:intergenic | 35.0% | |
| ATTTGATGCTCATCAACCTT+TGG | - | chr1_3:59740384-59740403 | Msa0129680:five_prime_UTR | 35.0% | |
| CTATCAACCATGAATATGCA+AGG | + | chr1_3:59740411-59740430 | None:intergenic | 35.0% | |
| !!! | CTTCTAGGGTTTAGGGTTTT+TGG | + | chr1_3:59735394-59735413 | None:intergenic | 40.0% |
| TCTAGAAGAAGCAGCTTCTA+GGG | + | chr1_3:59735408-59735427 | None:intergenic | 40.0% | |
| !!! | GCTGCAGAGTTGTTTTTGAA+GGG | + | chr1_3:59735442-59735461 | None:intergenic | 40.0% |
| TGATGAAGCAAAACGGTACA+TGG | + | chr1_3:59735539-59735558 | None:intergenic | 40.0% | |
| AGGCAAGTGATGAAGCAAAA+CGG | + | chr1_3:59735546-59735565 | None:intergenic | 40.0% | |
| ! | ATTGATGACTTACCGAGCTT+TGG | + | chr1_3:59735569-59735588 | None:intergenic | 40.0% |
| AAAGCTCGGTAAGTCATCAA+TGG | - | chr1_3:59735568-59735587 | Msa0129680:three_prime_UTR | 40.0% | |
| ! | AGCCATCTGAAGTGTGTAAA+AGG | + | chr1_3:59735621-59735640 | None:intergenic | 40.0% |
| ! | CTTTTGGATGCAGAATTGCT+AGG | - | chr1_3:59735842-59735861 | Msa0129680:CDS | 40.0% |
| GTGTTGCATAGATTGGAAGT+AGG | - | chr1_3:59735974-59735993 | Msa0129680:intron | 40.0% | |
| GCTGCCAAAGAGATCAAATT+TGG | - | chr1_3:59736018-59736037 | Msa0129680:CDS | 40.0% | |
| CACGCCAAATTTGATCTCTT+TGG | + | chr1_3:59736025-59736044 | None:intergenic | 40.0% | |
| CAAAGAGATCAAATTTGGCG+TGG | - | chr1_3:59736023-59736042 | Msa0129680:CDS | 40.0% | |
| TGAGGCAGTTAAAGTAACCA+TGG | - | chr1_3:59736086-59736105 | Msa0129680:intron | 40.0% | |
| GAGGCAGTTAAAGTAACCAT+GGG | - | chr1_3:59736087-59736106 | Msa0129680:intron | 40.0% | |
| TAAAGTAACCATGGGTCCTA+AGG | - | chr1_3:59736095-59736114 | Msa0129680:intron | 40.0% | |
| GAATATGTGAAGGAAACGGA+AGG | + | chr1_3:59736133-59736152 | None:intergenic | 40.0% | |
| CTGCGAATATGTGAAGGAAA+CGG | + | chr1_3:59736137-59736156 | None:intergenic | 40.0% | |
| TTTCCTTCACATATTCGCAG+TGG | - | chr1_3:59736137-59736156 | Msa0129680:intron | 40.0% | |
| ATTCCACTGCGAATATGTGA+AGG | + | chr1_3:59736143-59736162 | None:intergenic | 40.0% | |
| TTTGCTCAATCACCACGTTA+CGG | + | chr1_3:59736374-59736393 | None:intergenic | 40.0% | |
| !! | GGCTAAGAGCATTGAATTCA+AGG | - | chr1_3:59736434-59736453 | Msa0129680:intron | 40.0% |
| TGCAAATGCTACCAATGATG+TGG | - | chr1_3:59736497-59736516 | Msa0129680:CDS | 40.0% | |
| !!! | GGTTTTATTCCAAGGACCTT+TGG | - | chr1_3:59736617-59736636 | Msa0129680:intron | 40.0% |
| ! | ATGCCGATATTGTGCACTTT+TGG | - | chr1_3:59736720-59736739 | Msa0129680:CDS | 40.0% |
| CGAGACAAAATGCACAACAT+CGG | + | chr1_3:59736838-59736857 | None:intergenic | 40.0% | |
| TGTTGTGACCGACTAATGAA+TGG | - | chr1_3:59736859-59736878 | Msa0129680:intron | 40.0% | |
| TCCTTCTGTAAATATTGCCC+GGG | + | chr1_3:59736924-59736943 | None:intergenic | 40.0% | |
| CAAACTTGAAAAGCAGAGCA+CGG | - | chr1_3:59737020-59737039 | Msa0129680:intron | 40.0% | |
| ! | CACTTCTGAAGAAATTGCTC+AGG | - | chr1_3:59737051-59737070 | Msa0129680:intron | 40.0% |
| GTTGGCACAATATCTGCTAA+TGG | - | chr1_3:59737173-59737192 | Msa0129680:intron | 40.0% | |
| TGGCACAATATCTGCTAATG+GGG | - | chr1_3:59737175-59737194 | Msa0129680:intron | 40.0% | |
| GCTAATGGGGATAGAGAAAT+TGG | - | chr1_3:59737188-59737207 | Msa0129680:intron | 40.0% | |
| TTCTTTGCCAACTTTCTCCA+TGG | + | chr1_3:59737231-59737250 | None:intergenic | 40.0% | |
| ATGGAGAAAGTTGGCAAAGA+AGG | - | chr1_3:59737230-59737249 | Msa0129680:intron | 40.0% | |
| ACGGCAAGATGACAATAAGT+GGG | + | chr1_3:59737389-59737408 | None:intergenic | 40.0% | |
| !! | ACTTTTGAGCTGTTTCAGGA+TGG | - | chr1_3:59737434-59737453 | Msa0129680:intron | 40.0% |
| AATACGGAGAAATGTAGCCT+CGG | + | chr1_3:59737508-59737527 | None:intergenic | 40.0% | |
| ACAAAAGTCGCAACTACGAT+AGG | + | chr1_3:59737736-59737755 | None:intergenic | 40.0% | |
| TCATGACAATGTATGGAGCA+AGG | + | chr1_3:59737884-59737903 | None:intergenic | 40.0% | |
| ATTGATTGTTGCTGAGGATG+TGG | - | chr1_3:59738150-59738169 | Msa0129680:intron | 40.0% | |
| TAAGCTTCGTGCTGGAATTA+AGG | - | chr1_3:59738204-59738223 | Msa0129680:intron | 40.0% | |
| TTTGGGGAAAACAGGAAATC+TGG | - | chr1_3:59738352-59738371 | Msa0129680:CDS | 40.0% | |
| AAGATTCATGCCAAGCTCTT+CGG | + | chr1_3:59738507-59738526 | None:intergenic | 40.0% | |
| GATGACACTGTCATTCTTGA+TGG | - | chr1_3:59738706-59738725 | Msa0129680:intron | 40.0% | |
| AATTGAGGAAAGATGTGAGC+AGG | - | chr1_3:59738747-59738766 | Msa0129680:intron | 40.0% | |
| AGATGCCTTAAATGCAACCA+AGG | - | chr1_3:59739133-59739152 | Msa0129680:intron | 40.0% | |
| ATTGCAGGATTAAGCCTGAA+AGG | + | chr1_3:59739439-59739458 | None:intergenic | 40.0% | |
| GAACAGGATAATCCTGATCT+TGG | - | chr1_3:59739622-59739641 | Msa0129680:intron | 40.0% | |
| AAACAAGGAACACTGACCTT+TGG | + | chr1_3:59739659-59739678 | None:intergenic | 40.0% | |
| TATTAGCTGCTATGAAGACC+TGG | - | chr1_3:59740063-59740082 | Msa0129680:intron | 40.0% | |
| GAGAGATTAAAGCTGTAGGT+AGG | - | chr1_3:59740152-59740171 | Msa0129680:intron | 40.0% | |
| GCCTCTGTTAATTTCCAAGT+TGG | - | chr1_3:59740291-59740310 | Msa0129680:CDS | 40.0% | |
| ! | TTCTTCTGAAAGGACCAACT+TGG | + | chr1_3:59740308-59740327 | None:intergenic | 40.0% |
| CATGAATATGCAAGGACCAA+AGG | + | chr1_3:59740403-59740422 | None:intergenic | 40.0% | |
| CTTTGGTCCTTGCATATTCA+TGG | - | chr1_3:59740401-59740420 | Msa0129680:five_prime_UTR | 40.0% | |
| !! | GAAGCAGCTTCTAGGGTTTA+GGG | + | chr1_3:59735401-59735420 | None:intergenic | 45.0% |
| !! | AGAAGCAGCTTCTAGGGTTT+AGG | + | chr1_3:59735402-59735421 | None:intergenic | 45.0% |
| ! | CTCTAGAAGAAGCAGCTTCT+AGG | + | chr1_3:59735409-59735428 | None:intergenic | 45.0% |
| !!! | CGCTGCAGAGTTGTTTTTGA+AGG | + | chr1_3:59735443-59735462 | None:intergenic | 45.0% |
| GTACATGGTGTGGTTGGAAT+TGG | + | chr1_3:59735524-59735543 | None:intergenic | 45.0% | |
| AAAACGGTACATGGTGTGGT+TGG | + | chr1_3:59735530-59735549 | None:intergenic | 45.0% | |
| AAGCAAAACGGTACATGGTG+TGG | + | chr1_3:59735534-59735553 | None:intergenic | 45.0% | |
| TGCATAGATTGGAAGTAGGG+TGG | - | chr1_3:59735978-59735997 | Msa0129680:intron | 45.0% | |
| AGAGATCAAATTTGGCGTGG+AGG | - | chr1_3:59736026-59736045 | Msa0129680:CDS | 45.0% | |
| GCTCGTGCTTTGATGCTTAA+GGG | - | chr1_3:59736048-59736067 | Msa0129680:intron | 45.0% | |
| CTTAGTTACCTTAGGACCCA+TGG | + | chr1_3:59736106-59736125 | None:intergenic | 45.0% | |
| TCGCAGTGGAATGATGTCTT+TGG | - | chr1_3:59736151-59736170 | Msa0129680:intron | 45.0% | |
| ! | AGAGGGAAGAACACTAGCTT+TGG | - | chr1_3:59736257-59736276 | Msa0129680:CDS | 45.0% |
| !! | TAGCTTTGGTTGTAGCCTGT+AGG | - | chr1_3:59736271-59736290 | Msa0129680:CDS | 45.0% |
| GTGGTGATTGAGCAAAGCTT+TGG | - | chr1_3:59736378-59736397 | Msa0129680:intron | 45.0% | |
| GCCCCTAAAGTGACAAAAGA+TGG | - | chr1_3:59736402-59736421 | Msa0129680:intron | 45.0% | |
| GACAAAAGATGGAGTCACTG+TGG | - | chr1_3:59736413-59736432 | Msa0129680:intron | 45.0% | |
| TGCAACCTGCTTTACTAGAC+TGG | + | chr1_3:59736481-59736500 | None:intergenic | 45.0% | |
| AATGCTACCAATGATGTGGC+TGG | - | chr1_3:59736501-59736520 | Msa0129680:CDS | 45.0% | |
| !!! | TCGGTTTTATTCCTAGGACG+TGG | - | chr1_3:59736587-59736606 | Msa0129680:intron | 45.0% |
| TTCCTAGGACGTGGTTGATT+CGG | - | chr1_3:59736596-59736615 | Msa0129680:intron | 45.0% | |
| TTCCTAGGATTCCTAGGATG+TGG | - | chr1_3:59736767-59736786 | Msa0129680:intron | 45.0% | |
| GGTAAGAACTGTAGCACAAG+TGG | + | chr1_3:59736903-59736922 | None:intergenic | 45.0% | |
| CTTGTGCTACAGTTCTTACC+CGG | - | chr1_3:59736903-59736922 | Msa0129680:CDS | 45.0% | |
| TTGTGCTACAGTTCTTACCC+GGG | - | chr1_3:59736904-59736923 | Msa0129680:CDS | 45.0% | |
| ACCCGGGCAATATTTACAGA+AGG | - | chr1_3:59736920-59736939 | Msa0129680:CDS | 45.0% | |
| TGCAGCTGGAATGAATGCAA+TGG | - | chr1_3:59736955-59736974 | Msa0129680:CDS | 45.0% | |
| GAATGAATGCAATGGACCTG+AGG | - | chr1_3:59736963-59736982 | Msa0129680:intron | 45.0% | |
| CCATATTTATACCTCGCCTC+AGG | + | chr1_3:59736982-59737001 | None:intergenic | 45.0% | |
| CCTGAGGCGAGGTATAAATA+TGG | - | chr1_3:59736979-59736998 | Msa0129680:intron | 45.0% | |
| ATATTAGCCACAAGGACTGC+AGG | - | chr1_3:59737105-59737124 | Msa0129680:CDS | 45.0% | |
| GCAAAAGCCATGGAGAAAGT+TGG | - | chr1_3:59737221-59737240 | Msa0129680:intron | 45.0% | |
| CACGGCAAGATGACAATAAG+TGG | + | chr1_3:59737390-59737409 | None:intergenic | 45.0% | |
| TTTGTTACCACAGGAACTCG+AGG | - | chr1_3:59737950-59737969 | Msa0129680:intron | 45.0% | |
| ! | TCCTGTTTTCCCCAAAACCA+GGG | + | chr1_3:59738348-59738367 | None:intergenic | 45.0% |
| ! | TTCCTGTTTTCCCCAAAACC+AGG | + | chr1_3:59738349-59738368 | None:intergenic | 45.0% |
| AAACAGGAAATCTGGTCTCC+AGG | - | chr1_3:59738360-59738379 | Msa0129680:CDS | 45.0% | |
| GGTAGTCCACAATGATTGCT+CGG | - | chr1_3:59738619-59738638 | Msa0129680:CDS | 45.0% | |
| CCAAAACCGAGCAATCATTG+TGG | + | chr1_3:59738628-59738647 | None:intergenic | 45.0% | |
| ! | CCACAATGATTGCTCGGTTT+TGG | - | chr1_3:59738625-59738644 | Msa0129680:CDS | 45.0% |
| ACTGTCATTCTTGATGGAGC+TGG | - | chr1_3:59738712-59738731 | Msa0129680:intron | 45.0% | |
| ! | GAAAGATTGGCCAAGCTTTC+TGG | - | chr1_3:59738943-59738962 | Msa0129680:CDS | 45.0% |
| !! | GGCTGAAGTTGGTGAGAAAA+AGG | - | chr1_3:59739100-59739119 | Msa0129680:intron | 45.0% |
| AGCTGCCTTGGTTGCATTTA+AGG | + | chr1_3:59739141-59739160 | None:intergenic | 45.0% | |
| !! | GTATGTTTTTGCACAGGTGG+TGG | - | chr1_3:59739249-59739268 | Msa0129680:intron | 45.0% |
| CGAGGAAGGAGAATGGAATA+TGG | + | chr1_3:59739410-59739429 | None:intergenic | 45.0% | |
| GAATTGACGAGGAAGGAGAA+TGG | + | chr1_3:59739417-59739436 | None:intergenic | 45.0% | |
| CTGAAAGGAATTGACGAGGA+AGG | + | chr1_3:59739424-59739443 | None:intergenic | 45.0% | |
| CTTCCTCGTCAATTCCTTTC+AGG | - | chr1_3:59739422-59739441 | Msa0129680:CDS | 45.0% | |
| AAGCCTGAAAGGAATTGACG+AGG | + | chr1_3:59739428-59739447 | None:intergenic | 45.0% | |
| TGCATCAAATGCTGGAGTAG+AGG | - | chr1_3:59739573-59739592 | Msa0129680:intron | 45.0% | |
| GCATCAAATGCTGGAGTAGA+GGG | - | chr1_3:59739574-59739593 | Msa0129680:intron | 45.0% | |
| ! | TATGAAGACCTGGATTGGAG+TGG | - | chr1_3:59740073-59740092 | Msa0129680:intron | 45.0% |
| CATCACTTGCCTCCAAAGCT+CGG | - | chr1_3:59735554-59735573 | Msa0129680:three_prime_UTR | 50.0% | |
| ! | GATGACTTACCGAGCTTTGG+AGG | + | chr1_3:59735566-59735585 | None:intergenic | 50.0% |
| TGCTAGGAGCAACGCTAATC+AGG | - | chr1_3:59735858-59735877 | Msa0129680:CDS | 50.0% | |
| AGATTGGAAGTAGGGTGGCA+TGG | - | chr1_3:59735983-59736002 | Msa0129680:intron | 50.0% | |
| GGCTCGTGCTTTGATGCTTA+AGG | - | chr1_3:59736047-59736066 | Msa0129680:intron | 50.0% | |
| !! | GGGTGTTGAAGAACTTGCTG+AGG | - | chr1_3:59736068-59736087 | Msa0129680:intron | 50.0% |
| TTGGTTGTAGCCTGTAGGAC+TGG | - | chr1_3:59736276-59736295 | Msa0129680:CDS | 50.0% | |
| CACGTTACGGCCCTAAAAAC+AGG | + | chr1_3:59736361-59736380 | None:intergenic | 50.0% | |
| !!! | CTGTTTTTAGGGCCGTAACG+TGG | - | chr1_3:59736359-59736378 | Msa0129680:intron | 50.0% |
| ACCAATGATGTGGCTGGTGA+TGG | - | chr1_3:59736507-59736526 | Msa0129680:CDS | 50.0% | |
| ACCATCACCAGCCACATCAT+TGG | + | chr1_3:59736511-59736530 | None:intergenic | 50.0% | |
| AACCGAATCAACCACGTCCT+AGG | + | chr1_3:59736601-59736620 | None:intergenic | 50.0% | |
| CACCACATCCTAGGAATCCT+AGG | + | chr1_3:59736772-59736791 | None:intergenic | 50.0% | |
| GGATGCAAATCAGTTGCAGC+TGG | - | chr1_3:59736941-59736960 | Msa0129680:CDS | 50.0% | |
| TCATCTTGCCGTGCACTTTG+TGG | - | chr1_3:59737397-59737416 | Msa0129680:intron | 50.0% | |
| CCAGCATACCACAAAGTGCA+CGG | + | chr1_3:59737408-59737427 | None:intergenic | 50.0% | |
| CGTGCACTTTGTGGTATGCT+GGG | - | chr1_3:59737406-59737425 | Msa0129680:intron | 50.0% | |
| GAAGGAATGAAGCTTGACCG+AGG | - | chr1_3:59737488-59737507 | Msa0129680:CDS | 50.0% | |
| !! | CGATCAAAGCCCCTGGTTTT+GGG | - | chr1_3:59738335-59738354 | Msa0129680:CDS | 50.0% |
| !!! | GATCAAAGCCCCTGGTTTTG+GGG | - | chr1_3:59738336-59738355 | Msa0129680:CDS | 50.0% |
| ! | CCTGTTTTCCCCAAAACCAG+GGG | + | chr1_3:59738347-59738366 | None:intergenic | 50.0% |
| CTGTAAGAACAGCGAGATCC+TGG | + | chr1_3:59738381-59738400 | None:intergenic | 50.0% | |
| CAGGATCTCGCTGTTCTTAC+AGG | - | chr1_3:59738379-59738398 | Msa0129680:CDS | 50.0% | |
| GATCTCGCTGTTCTTACAGG+AGG | - | chr1_3:59738382-59738401 | Msa0129680:CDS | 50.0% | |
| CAGCTTATCACCGAAGAGCT+TGG | - | chr1_3:59738494-59738513 | Msa0129680:intron | 50.0% | |
| ! | AGATTGGCCAAGCTTTCTGG+AGG | - | chr1_3:59738946-59738965 | Msa0129680:CDS | 50.0% |
| TGCAACTCCTCCAGAAAGCT+TGG | + | chr1_3:59738956-59738975 | None:intergenic | 50.0% | |
| TGGAGGAGTTGCAGTGCTTA+AGG | - | chr1_3:59738963-59738982 | Msa0129680:intron | 50.0% | |
| !! | GTAGAGGGTGCTGTTGTTGT+TGG | - | chr1_3:59739589-59739608 | Msa0129680:intron | 50.0% |
| CAAGGAACACTGACCTTTGG+CGG | + | chr1_3:59739656-59739675 | None:intergenic | 50.0% | |
| GCGGTCCTAATCACCTTCAA+TGG | + | chr1_3:59739840-59739859 | None:intergenic | 50.0% | |
| TAGTCCATACCACCCATACC+AGG | + | chr1_3:59740045-59740064 | None:intergenic | 50.0% | |
| GCTGCTATGAAGACCTGGAT+TGG | - | chr1_3:59740068-59740087 | Msa0129680:intron | 50.0% | |
| ! | TTGAAGCACCACTCCAATCC+AGG | + | chr1_3:59740084-59740103 | None:intergenic | 50.0% |
| ! | CGGTGCCAGTCTAGTAAAGC+AGG | - | chr1_3:59736473-59736492 | Msa0129680:intron | 55.0% |
| AATGCAATGGACCTGAGGCG+AGG | - | chr1_3:59736968-59736987 | Msa0129680:intron | 55.0% | |
| CTACTGTCCTGCAGTCCTTG+TGG | + | chr1_3:59737115-59737134 | None:intergenic | 55.0% | |
| CCGTGCACTTTGTGGTATGC+TGG | - | chr1_3:59737405-59737424 | Msa0129680:intron | 55.0% | |
| TCGTTGTCAGGTGTCCCTGT+CGG | - | chr1_3:59737855-59737874 | Msa0129680:CDS | 55.0% | |
| ATGGAGCAAGGACACCGACA+GGG | + | chr1_3:59737872-59737891 | None:intergenic | 55.0% | |
| TATGGAGCAAGGACACCGAC+AGG | + | chr1_3:59737873-59737892 | None:intergenic | 55.0% | |
| ! | GCGATCAAAGCCCCTGGTTT+TGG | - | chr1_3:59738334-59738353 | Msa0129680:CDS | 55.0% |
| !!! | CCCCTGGTTTTGGGGAAAAC+AGG | - | chr1_3:59738344-59738363 | Msa0129680:CDS | 55.0% |
| GAAGATTGGAGGAGCCAGTG+AGG | - | chr1_3:59739079-59739098 | Msa0129680:intron | 55.0% | |
| CTCACCAACTTCAGCCTCAC+TGG | + | chr1_3:59739096-59739115 | None:intergenic | 55.0% | |
| TGCAACCAAGGCAGCTGTAG+AGG | - | chr1_3:59739145-59739164 | Msa0129680:intron | 55.0% | |
| AACCAAGGCAGCTGTAGAGG+AGG | - | chr1_3:59739148-59739167 | Msa0129680:intron | 55.0% | |
| ACCAAGGCAGCTGTAGAGGA+GGG | - | chr1_3:59739149-59739168 | Msa0129680:intron | 55.0% | |
| ! | GTAGAGGAGGGCATAGTACC+TGG | - | chr1_3:59739161-59739180 | Msa0129680:intron | 55.0% |
| GCGGCATCGTAACCAAGATC+AGG | + | chr1_3:59739637-59739656 | None:intergenic | 55.0% | |
| CTTGGTTACGATGCCGCCAA+AGG | - | chr1_3:59739640-59739659 | Msa0129680:intron | 55.0% | |
| GAAGGTGATTAGGACCGCCT+TGG | - | chr1_3:59739842-59739861 | Msa0129680:CDS | 55.0% | |
| AAAGATGCTCCTGCCATGCC+TGG | - | chr1_3:59740024-59740043 | Msa0129680:intron | 55.0% | |
| CATACCACCCATACCAGGCA+TGG | + | chr1_3:59740040-59740059 | None:intergenic | 55.0% | |
| CATGCCTGGTATGGGTGGTA+TGG | - | chr1_3:59740038-59740057 | Msa0129680:intron | 55.0% | |
| AGGGGATCCTCGAGTTCCTG+TGG | + | chr1_3:59737960-59737979 | None:intergenic | 60.0% | |
| GTATGCGCGATCAAAGCCCC+TGG | - | chr1_3:59738328-59738347 | Msa0129680:CDS | 60.0% | |
| GGAGCCAGTGAGGCTGAAGT+TGG | - | chr1_3:59739089-59739108 | Msa0129680:intron | 60.0% | |
| TGCTCCTGCCATGCCTGGTA+TGG | - | chr1_3:59740029-59740048 | Msa0129680:intron | 60.0% | |
| GCTCCTGCCATGCCTGGTAT+GGG | - | chr1_3:59740030-59740049 | Msa0129680:intron | 60.0% | |
| GCCCTCCTCTACAGCTGCCT+TGG | + | chr1_3:59739153-59739172 | None:intergenic | 65.0% | |
| CCACCCATACCAGGCATGGC+AGG | + | chr1_3:59740036-59740055 | None:intergenic | 65.0% | |
| CCTGCCATGCCTGGTATGGG+TGG | - | chr1_3:59740033-59740052 | Msa0129680:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59735378 | 59740485 | 59735378 | ID=Msa0129680;Name=Msa0129680 |
| chr1_3 | mRNA | 59735378 | 59740485 | 59735378 | ID=Msa0129680-mRNA-1;Parent=Msa0129680;Name=Msa0129680-mRNA-1;_AED=0.31;_eAED=0.31;_QI=160|1|1|1|1|1|18|417|574 |
| chr1_3 | exon | 59735378 | 59735897 | 59735378 | ID=Msa0129680-mRNA-1:exon:19513;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59735986 | 59736064 | 59735986 | ID=Msa0129680-mRNA-1:exon:19512;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59736202 | 59736307 | 59736202 | ID=Msa0129680-mRNA-1:exon:19511;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59736495 | 59736598 | 59736495 | ID=Msa0129680-mRNA-1:exon:19510;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59736681 | 59736780 | 59736681 | ID=Msa0129680-mRNA-1:exon:19509;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59736879 | 59736974 | 59736879 | ID=Msa0129680-mRNA-1:exon:19508;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59737095 | 59737172 | 59737095 | ID=Msa0129680-mRNA-1:exon:19507;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59737298 | 59737366 | 59737298 | ID=Msa0129680-mRNA-1:exon:19506;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59737455 | 59737535 | 59737455 | ID=Msa0129680-mRNA-1:exon:19505;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59737638 | 59737727 | 59737638 | ID=Msa0129680-mRNA-1:exon:19504;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59737814 | 59737900 | 59737814 | ID=Msa0129680-mRNA-1:exon:19503;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59738307 | 59738411 | 59738307 | ID=Msa0129680-mRNA-1:exon:19502;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59738595 | 59738690 | 59738595 | ID=Msa0129680-mRNA-1:exon:19501;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59738791 | 59738966 | 59738791 | ID=Msa0129680-mRNA-1:exon:19500;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59739335 | 59739494 | 59739335 | ID=Msa0129680-mRNA-1:exon:19499;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59739747 | 59739878 | 59739747 | ID=Msa0129680-mRNA-1:exon:19498;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59739984 | 59740008 | 59739984 | ID=Msa0129680-mRNA-1:exon:19497;Parent=Msa0129680-mRNA-1 |
| chr1_3 | exon | 59740288 | 59740485 | 59740288 | ID=Msa0129680-mRNA-1:exon:19496;Parent=Msa0129680-mRNA-1 |
| chr1_3 | five_prime_UTR | 59740326 | 59740485 | 59740326 | ID=Msa0129680-mRNA-1:five_prime_utr;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59740288 | 59740325 | 59740288 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59739984 | 59740008 | 59739984 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59739747 | 59739878 | 59739747 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59739335 | 59739494 | 59739335 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59738791 | 59738966 | 59738791 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59738595 | 59738690 | 59738595 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59738307 | 59738411 | 59738307 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59737814 | 59737900 | 59737814 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59737638 | 59737727 | 59737638 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59737455 | 59737535 | 59737455 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59737298 | 59737366 | 59737298 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59737095 | 59737172 | 59737095 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59736879 | 59736974 | 59736879 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59736681 | 59736780 | 59736681 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59736495 | 59736598 | 59736495 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59736202 | 59736307 | 59736202 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59735986 | 59736064 | 59735986 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | CDS | 59735795 | 59735897 | 59735795 | ID=Msa0129680-mRNA-1:cds;Parent=Msa0129680-mRNA-1 |
| chr1_3 | three_prime_UTR | 59735378 | 59735794 | 59735378 | ID=Msa0129680-mRNA-1:three_prime_utr;Parent=Msa0129680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
