Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129660 | XP_003591642.1 | 99.479 | 576 | 3 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129660 | sp|Q05046|CH62_CUCMA | 90.619 | 565 | 53 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129660 | Q1RSH4 | 99.479 | 576 | 3 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002790 | Msa0129660 | 0.807139 | 5.848666e-50 | -8.615850e-47 |
| Msa0022970 | Msa0129660 | 0.805054 | 1.606456e-49 | -8.615850e-47 |
| Msa0044890 | Msa0129660 | 0.854801 | 9.662171e-62 | -8.615850e-47 |
| Msa0068970 | Msa0129660 | 0.848668 | 5.294656e-60 | -8.615850e-47 |
| Msa0116670 | Msa0129660 | 0.815968 | 7.044155e-52 | -8.615850e-47 |
| Msa0129660 | Msa0129680 | 0.821257 | 4.445585e-53 | -8.615850e-47 |
| Msa0129660 | Msa0173530 | 0.817238 | 3.657843e-52 | -8.615850e-47 |
| Msa0129660 | Msa0183090 | 0.809431 | 1.898738e-50 | -8.615850e-47 |
| Msa0129660 | Msa0289580 | 0.805877 | 1.079659e-49 | -8.615850e-47 |
| Msa0129660 | Msa0289610 | 0.807322 | 5.348527e-50 | -8.615850e-47 |
| Msa0129660 | Msa0342850 | 0.813471 | 2.517295e-51 | -8.615850e-47 |
| Msa0129660 | Msa0485510 | 0.838505 | 2.764286e-57 | -8.615850e-47 |
| Msa0129660 | Msa0486070 | 0.871104 | 8.809927e-67 | -8.615850e-47 |
| Msa0129660 | Msa0729200 | 0.801102 | 1.054686e-48 | -8.615850e-47 |
| Msa0129660 | Msa0769590 | 0.800343 | 1.506898e-48 | -8.615850e-47 |
| Msa0129660 | Msa1012740 | 0.807570 | 4.738096e-50 | -8.615850e-47 |
| Msa0129660 | Msa1012770 | 0.813556 | 2.411232e-51 | -8.615850e-47 |
| Msa0129660 | Msa1072710 | 0.806368 | 8.509364e-50 | -8.615850e-47 |
| Msa0129660 | Msa1078870 | 0.833540 | 5.028424e-56 | -8.615850e-47 |
| Msa0129660 | Msa1078980 | 0.837630 | 4.641383e-57 | -8.615850e-47 |
| Msa0129660 | Msa1094380 | 0.819024 | 1.443077e-52 | -8.615850e-47 |
| Msa0129660 | Msa1128120 | 0.800282 | 1.550666e-48 | -8.615850e-47 |
| Msa0129660 | Msa1169180 | 0.824625 | 7.294839e-54 | -8.615850e-47 |
| Msa0129660 | Msa1225720 | 0.830545 | 2.764380e-55 | -8.615850e-47 |
| Msa0129660 | Msa1258390 | 0.843958 | 1.017176e-58 | -8.615850e-47 |
| Msa0129660 | Msa1332250 | 0.835700 | 1.440203e-56 | -8.615850e-47 |
| Msa0129660 | Msa1426120 | 0.845240 | 4.594214e-59 | -8.615850e-47 |
| Msa0129660 | Msa1426490 | 0.816497 | 5.365016e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129660 | MtrunA17_Chr1g0196751 | 99.479 | 576 | 3 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1149 |
| Msa0129660 | MtrunA17_Chr1g0196761 | 95.637 | 573 | 24 | 1 | 1 | 573 | 1 | 572 | 0.0 | 1101 |
| Msa0129660 | MtrunA17_Chr8g0342341 | 70.475 | 569 | 166 | 2 | 1 | 567 | 1 | 569 | 0.0 | 785 |
| Msa0129660 | MtrunA17_Chr1g0152151 | 46.055 | 545 | 289 | 3 | 34 | 574 | 47 | 590 | 1.38e-164 | 481 |
| Msa0129660 | MtrunA17_Chr1g0152141 | 45.668 | 554 | 292 | 4 | 29 | 574 | 38 | 590 | 5.30e-164 | 480 |
| Msa0129660 | MtrunA17_Chr4g0028601 | 44.912 | 570 | 303 | 5 | 6 | 570 | 22 | 585 | 4.31e-158 | 464 |
| Msa0129660 | MtrunA17_Chr5g0421251 | 42.545 | 503 | 280 | 5 | 4 | 501 | 9 | 507 | 1.06e-135 | 405 |
| Msa0129660 | MtrunA17_Chr4g0043731 | 42.205 | 526 | 298 | 5 | 33 | 555 | 40 | 562 | 9.29e-135 | 404 |
| Msa0129660 | MtrunA17_Chr7g0241881 | 23.623 | 563 | 337 | 20 | 40 | 562 | 16 | 525 | 1.37e-13 | 73.6 |
| Msa0129660 | MtrunA17_Chr7g0272821 | 23.310 | 562 | 340 | 19 | 40 | 562 | 16 | 525 | 1.44e-13 | 73.6 |
| Msa0129660 | MtrunA17_Chr3g0126151 | 91.892 | 37 | 3 | 0 | 142 | 178 | 1 | 37 | 2.34e-13 | 67.8 |
| Msa0129660 | MtrunA17_Chr1g0212541 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 2.97e-13 | 64.7 |
| Msa0129660 | MtrunA17_Chr7g0238391 | 86.486 | 37 | 5 | 0 | 142 | 178 | 1 | 37 | 5.43e-13 | 65.5 |
| Msa0129660 | MtrunA17_Chr4g0019131 | 88.889 | 36 | 4 | 0 | 142 | 177 | 1 | 36 | 6.61e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129660 | AT3G23990.1 | 88.968 | 562 | 61 | 1 | 1 | 562 | 1 | 561 | 0.0 | 1016 |
| Msa0129660 | AT2G33210.1 | 85.816 | 564 | 80 | 0 | 1 | 564 | 1 | 564 | 0.0 | 989 |
| Msa0129660 | AT2G33210.2 | 85.106 | 564 | 79 | 1 | 1 | 564 | 1 | 559 | 0.0 | 974 |
| Msa0129660 | AT3G13860.1 | 71.609 | 553 | 155 | 1 | 22 | 574 | 21 | 571 | 0.0 | 798 |
| Msa0129660 | AT5G56500.2 | 47.005 | 551 | 286 | 4 | 20 | 565 | 37 | 586 | 1.45e-168 | 492 |
| Msa0129660 | AT5G56500.1 | 47.005 | 551 | 286 | 4 | 20 | 565 | 37 | 586 | 1.45e-168 | 492 |
| Msa0129660 | AT3G13470.1 | 45.745 | 564 | 297 | 5 | 16 | 574 | 36 | 595 | 9.86e-163 | 477 |
| Msa0129660 | AT1G55490.5 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0129660 | AT1G55490.1 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0129660 | AT1G55490.3 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0129660 | AT1G55490.4 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0129660 | AT1G55490.2 | 46.494 | 542 | 279 | 5 | 33 | 569 | 55 | 590 | 1.90e-161 | 474 |
| Msa0129660 | AT2G28000.1 | 44.732 | 541 | 287 | 5 | 25 | 555 | 31 | 569 | 1.34e-155 | 458 |
| Msa0129660 | AT1G26230.1 | 42.992 | 528 | 296 | 3 | 33 | 556 | 39 | 565 | 9.58e-153 | 452 |
| Msa0129660 | AT1G26230.4 | 43.615 | 509 | 284 | 2 | 50 | 556 | 6 | 513 | 7.31e-152 | 448 |
| Msa0129660 | AT1G26230.3 | 43.762 | 505 | 281 | 2 | 54 | 556 | 2 | 505 | 1.08e-151 | 447 |
| Msa0129660 | AT1G26230.2 | 43.008 | 472 | 264 | 3 | 33 | 500 | 39 | 509 | 3.71e-135 | 405 |
| Msa0129660 | AT5G18820.1 | 39.665 | 537 | 317 | 4 | 34 | 567 | 35 | 567 | 2.94e-121 | 370 |
| Msa0129660 | AT1G26230.5 | 43.210 | 405 | 227 | 2 | 33 | 435 | 39 | 442 | 2.98e-117 | 356 |
| Msa0129660 | AT5G18820.2 | 38.661 | 463 | 278 | 3 | 108 | 567 | 2 | 461 | 1.81e-97 | 305 |
| Msa0129660 | AT5G18820.3 | 39.050 | 379 | 230 | 1 | 34 | 412 | 35 | 412 | 4.01e-82 | 264 |
| Msa0129660 | AT5G20890.1 | 22.995 | 561 | 343 | 18 | 40 | 562 | 16 | 525 | 1.69e-12 | 70.5 |
Find 162 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCCTTTGTTGCATTTA+AGG | 0.047614 | 1_3:+59727100 | None:intergenic |
| CACAAACCTTTAAAGCATTT+TGG | 0.119176 | 1_3:+59726889 | None:intergenic |
| AATTATCCAAAATGCTTTAA+AGG | 0.122359 | 1_3:-59726895 | Msa0129660:intron |
| GAAAGATTGGCCAAGCTTTC+TGG | 0.170406 | 1_3:-59727309 | Msa0129660:CDS |
| ATAGAAAACATACACATTTC+TGG | 0.224089 | 1_3:+59728720 | None:intergenic |
| CAGGATCTCGCTGTTCTTAC+AGG | 0.260673 | 1_3:-59727958 | Msa0129660:CDS |
| GCCTATCTTCTGATCAAAAT+TGG | 0.268310 | 1_3:+59726923 | None:intergenic |
| ACTCCATCTTTGGTCACTTT+AGG | 0.302236 | 1_3:+59729826 | None:intergenic |
| GCGGCTAAAGAGATCAAATT+TGG | 0.302539 | 1_3:-59730238 | Msa0129660:CDS |
| TCTATCTCCATTAGCGGATA+TGG | 0.308708 | 1_3:+59729214 | None:intergenic |
| TTCCAGCGCGAAGCTTATTT+AGG | 0.312394 | 1_3:+59728142 | None:intergenic |
| ACAATTTCTTACTAATTTAG+AGG | 0.315746 | 1_3:+59725969 | None:intergenic |
| GCTAATGGAGATAGAGAAAT+TGG | 0.316927 | 1_3:-59729206 | Msa0129660:CDS |
| TTGATCCATTGAAGGTGATT+AGG | 0.317500 | 1_3:-59726419 | Msa0129660:CDS |
| GGCTCGTGCTTTGATGCTTA+AGG | 0.319494 | 1_3:-59730209 | Msa0129660:CDS |
| GCCTGCTGGCATGGGTGGCA+TGG | 0.321916 | 1_3:-59726209 | Msa0129660:CDS |
| GCCATCAAAGCCCCTGGTTT+TGG | 0.322345 | 1_3:-59728003 | Msa0129660:CDS |
| TCCTGCTATGCCTGCTGGCA+TGG | 0.323193 | 1_3:-59726218 | Msa0129660:CDS |
| ACCAAAACCAGGGGCTTTGA+TGG | 0.331514 | 1_3:+59728002 | None:intergenic |
| AGCAACGGTTACTCCATCTT+TGG | 0.333062 | 1_3:+59729816 | None:intergenic |
| CCTGCTGGCATGGGTGGCAT+GGG | 0.334854 | 1_3:-59726208 | Msa0129660:CDS |
| TAACTCTAATACTTTAACTA+TGG | 0.336418 | 1_3:+59728317 | None:intergenic |
| TTCTGGTTTGTTATGAAATA+CGG | 0.342174 | 1_3:+59728746 | None:intergenic |
| TTTGGTGAAAATCGTAAATC+TGG | 0.347230 | 1_3:-59727985 | Msa0129660:CDS |
| AAGAATGACAGTGTCATCTT+TGG | 0.352160 | 1_3:+59727542 | None:intergenic |
| AGCTGGATAAGTACTTCTTA+TGG | 0.356971 | 1_3:-59725844 | Msa0129660:three_prime_UTR |
| GGTTGCATAGGTTGGAAGTA+GGG | 0.363246 | 1_3:-59730281 | Msa0129660:intron |
| TCCTCTCTAACCTACAGATT+TGG | 0.369099 | 1_3:+59726053 | None:intergenic |
| TGCTAAGAGCATTGAGTTCA+AGG | 0.374277 | 1_3:-59729797 | Msa0129660:CDS |
| ATACACATTTCTGGTTCTTC+TGG | 0.375059 | 1_3:+59728729 | None:intergenic |
| ATTGATGACTTACCGAGCTT+TGG | 0.376430 | 1_3:+59730707 | None:intergenic |
| TCCACACTTTGAAGTTTGTC+CGG | 0.377048 | 1_3:-59725945 | Msa0129660:three_prime_UTR |
| AGCTGAAGTTGGTGAGAAAA+AGG | 0.380828 | 1_3:-59727138 | Msa0129660:CDS |
| TGGTGGTGTTGCCGTGCTTA+AGG | 0.386684 | 1_3:-59727289 | Msa0129660:intron |
| CTTAGGTGAATATGTTGATA+TGG | 0.387696 | 1_3:-59726457 | Msa0129660:intron |
| TTATGACAAGGATAAATTAC+AGG | 0.389882 | 1_3:-59727331 | Msa0129660:CDS |
| GCTCGTGCTTTGATGCTTAA+GGG | 0.392668 | 1_3:-59730208 | Msa0129660:CDS |
| GGCAACTGATTTGCAGCCTT+CGG | 0.393583 | 1_3:+59729476 | None:intergenic |
| TTTCTTGTTGTCTTTCTAGC+TGG | 0.394817 | 1_3:-59725861 | Msa0129660:three_prime_UTR |
| GAACAGGATAATCCTGATCT+TGG | 0.397251 | 1_3:-59726609 | Msa0129660:CDS |
| CCTGCTATGCCTGCTGGCAT+GGG | 0.398498 | 1_3:-59726217 | Msa0129660:CDS |
| TCATCCGTGCTCTGCTCTTA+AGG | 0.401053 | 1_3:+59729388 | None:intergenic |
| AATGTTTGGCTCTTGCAAAA+AGG | 0.401073 | 1_3:-59727796 | Msa0129660:intron |
| CCTGAGGCGAGGTATAAATA+TGG | 0.408456 | 1_3:-59729433 | Msa0129660:CDS |
| TGCTAGGAACAATGTTCAAC+AGG | 0.408660 | 1_3:-59730434 | Msa0129660:intron |
| CGTTGTTGTTGGTAAACTAT+TGG | 0.409221 | 1_3:-59726631 | Msa0129660:CDS |
| CTGTAAGAACAGCGAGATCC+TGG | 0.413061 | 1_3:+59727959 | None:intergenic |
| CAATCTTGAGAAAGTTGATC+TGG | 0.419323 | 1_3:-59727820 | Msa0129660:CDS |
| TGTTGGTAAACTATTGGAAC+AGG | 0.427783 | 1_3:-59726625 | Msa0129660:CDS |
| AACTTGAGATCTTCTTCTCA+TGG | 0.434377 | 1_3:+59728346 | None:intergenic |
| GCTGGCATGGGTGGCATGGG+TGG | 0.436515 | 1_3:-59726205 | Msa0129660:CDS |
| GGATAAATTACAGGAAAGAT+TGG | 0.438480 | 1_3:-59727322 | Msa0129660:CDS |
| GGGTTGCATAGGTTGGAAGT+AGG | 0.444282 | 1_3:-59730282 | Msa0129660:intron |
| GATGACTTACCGAGCTTTGG+AGG | 0.447733 | 1_3:+59730710 | None:intergenic |
| AAAGTTGATCTGGAAATGTT+TGG | 0.450294 | 1_3:-59727810 | Msa0129660:CDS |
| CCACACTTTGAAGTTTGTCC+GGG | 0.451682 | 1_3:-59725944 | Msa0129660:three_prime_UTR |
| TCTTCAGCAACAATCAATAA+AGG | 0.452793 | 1_3:+59728195 | None:intergenic |
| AAGGATAAGGTCAAGAATAT+AGG | 0.456727 | 1_3:-59729778 | Msa0129660:CDS |
| CCCATGCCAGCAGGCATAGC+AGG | 0.458740 | 1_3:+59726217 | None:intergenic |
| GGCAACACCACCAGAAAGCT+TGG | 0.460471 | 1_3:+59727299 | None:intergenic |
| GTGGTTATTGAGCAAAGTTT+TGG | 0.460497 | 1_3:-59729853 | Msa0129660:CDS |
| GAGCATTGAGTTCAAGGATA+AGG | 0.465285 | 1_3:-59729791 | Msa0129660:CDS |
| GATGACACTGTCATTCTTGA+CGG | 0.465554 | 1_3:-59727537 | Msa0129660:CDS |
| GTGGGGACCATATCCGCTAA+TGG | 0.468779 | 1_3:-59729221 | Msa0129660:CDS |
| ACCATCACCGGCCACATCAT+TGG | 0.470223 | 1_3:+59729723 | None:intergenic |
| TAAGCTTCGCGCTGGAATCA+AGG | 0.470840 | 1_3:-59728136 | Msa0129660:intron |
| GTTGAGGGTGCCGTTGTTGT+TGG | 0.471254 | 1_3:-59726642 | Msa0129660:CDS |
| TGGAATTATTGATCCATTGA+AGG | 0.473862 | 1_3:-59726427 | Msa0129660:CDS |
| GCGGTCCTAATCACCTTCAA+TGG | 0.479235 | 1_3:+59726414 | None:intergenic |
| CTTTCTCAAGATTGTGGCCA+AGG | 0.483503 | 1_3:+59727829 | None:intergenic |
| TATGTTGATATGGTTAAAGC+TGG | 0.483553 | 1_3:-59726447 | Msa0129660:CDS |
| GGACCATCTTTATCTTCACT+TGG | 0.484269 | 1_3:+59726238 | None:intergenic |
| GCTCCTAAAGTGACCAAAGA+TGG | 0.484659 | 1_3:-59729829 | Msa0129660:CDS |
| CTTCTCATGGATTATGATGA+GGG | 0.485482 | 1_3:+59728359 | None:intergenic |
| TGGTTATTAGTAGATGAATC+TGG | 0.486814 | 1_3:-59726185 | Msa0129660:exon |
| AATTTCTCTATCTCCATTAG+CGG | 0.488890 | 1_3:+59729208 | None:intergenic |
| GCGGCATCGTAACCAAGATC+AGG | 0.490844 | 1_3:+59726597 | None:intergenic |
| AGCAACCTGCTTTACAAGAC+TGG | 0.493066 | 1_3:+59729753 | None:intergenic |
| TGAGTTAATTGCAAAAGCTA+TGG | 0.493322 | 1_3:-59729183 | Msa0129660:CDS |
| CCCATGCCACCCATGCCAGC+AGG | 0.496210 | 1_3:+59726208 | None:intergenic |
| CTTAGTTACCTTAGGACCCA+TGG | 0.497517 | 1_3:+59730153 | None:intergenic |
| ATGGAGAAAGTTGGCAAAGA+AGG | 0.503330 | 1_3:-59729164 | Msa0129660:CDS |
| AACGAGTTGGAAGTTGTTGA+AGG | 0.508899 | 1_3:-59728797 | Msa0129660:CDS |
| GCTATGCCTGCTGGCATGGG+TGG | 0.510675 | 1_3:-59726214 | Msa0129660:CDS |
| GTGTGTGCCATCAAAGCCCC+TGG | 0.511219 | 1_3:-59728009 | Msa0129660:CDS |
| AACAAAGGCAGCTGTAGAAG+AGG | 0.513397 | 1_3:-59727090 | Msa0129660:CDS |
| GGCTGCAAATCAGTTGCCGC+TGG | 0.515513 | 1_3:-59729471 | Msa0129660:CDS |
| GATGGTCCTGCTATGCCTGC+TGG | 0.515745 | 1_3:-59726223 | Msa0129660:CDS |
| TAAAGTAACCATGGGTCCTA+AGG | 0.516839 | 1_3:-59730161 | Msa0129660:intron |
| CCGCCTTGGTTGATGCAGCC+AGG | 0.517528 | 1_3:-59726395 | Msa0129660:intron |
| AAATCGTAAATCTGGTCTCC+AGG | 0.522321 | 1_3:-59727977 | Msa0129660:CDS |
| AGGTGCCAGTCTTGTAAAGC+AGG | 0.524872 | 1_3:-59729758 | Msa0129660:CDS |
| GCATCAAATGCTGGAGTTGA+GGG | 0.525412 | 1_3:-59726657 | Msa0129660:CDS |
| GCTTAGTGTTTACTGACAGA+AGG | 0.527316 | 1_3:-59726103 | Msa0129660:three_prime_UTR |
| TATTGAGGAAAGATGTGAGC+AGG | 0.528209 | 1_3:-59727496 | Msa0129660:intron |
| ACTGTCATTCTTGACGGTGC+TGG | 0.534427 | 1_3:-59727531 | Msa0129660:CDS |
| GCAAAAGCTATGGAGAAAGT+TGG | 0.536845 | 1_3:-59729173 | Msa0129660:CDS |
| GAAGGTGATTAGGACCGCCT+TGG | 0.537650 | 1_3:-59726409 | Msa0129660:CDS |
| GGTACCACTCTCTCTAATCA+AGG | 0.539372 | 1_3:+59726147 | None:intergenic |
| TGGTGATAAGAAAGCTATTG+AGG | 0.540583 | 1_3:-59727511 | Msa0129660:CDS |
| CACACAATTGCATCAAATGC+TGG | 0.544124 | 1_3:-59726666 | Msa0129660:CDS |
| GTAGAAGAGGGCATAGTACC+TGG | 0.544434 | 1_3:-59727077 | Msa0129660:intron |
| AACCTTTCACGTGAAAAGCC+CGG | 0.544448 | 1_3:+59725926 | None:intergenic |
| CACTTCTGAAGAAATAGCCC+AGG | 0.545555 | 1_3:-59729361 | Msa0129660:intron |
| GATCAACTTTCTCAAGATTG+TGG | 0.546281 | 1_3:+59727823 | None:intergenic |
| AAAGGAACACTGACCTTTGG+CGG | 0.547374 | 1_3:+59726578 | None:intergenic |
| TCTTCTCATGGATTATGATG+AGG | 0.552511 | 1_3:+59728358 | None:intergenic |
| TATTTAGGATAAGAGTTGCA+AGG | 0.553538 | 1_3:+59728157 | None:intergenic |
| ATTTAGGATAAGAGTTGCAA+GGG | 0.555828 | 1_3:+59728158 | None:intergenic |
| GACCATCTTTATCTTCACTT+GGG | 0.556084 | 1_3:+59726239 | None:intergenic |
| CAAGACATTGCACAACGAGT+TGG | 0.556191 | 1_3:-59728810 | Msa0129660:CDS |
| AGGCAAGTGATGAAGCAAAT+CGG | 0.556883 | 1_3:+59730730 | None:intergenic |
| CAGCTTATCACTGAAGACCT+TGG | 0.559940 | 1_3:-59727846 | Msa0129660:CDS |
| ACCAAATCTGTAGGTTAGAG+AGG | 0.561117 | 1_3:-59726054 | Msa0129660:three_prime_UTR |
| ATAAAACAGCTTACCATCAC+CGG | 0.564711 | 1_3:+59729711 | None:intergenic |
| TGCATCAAATGCTGGAGTTG+AGG | 0.564923 | 1_3:-59726658 | Msa0129660:CDS |
| AGGTTGGAAGTAGGGTGGCA+TGG | 0.567170 | 1_3:-59730273 | Msa0129660:CDS |
| CAATTTCTTACTAATTTAGA+GGG | 0.568203 | 1_3:+59725970 | None:intergenic |
| CATCACTTGCCTCCAAAGCT+CGG | 0.570155 | 1_3:-59730719 | Msa0129660:intron |
| ACCAATGATGTGGCCGGTGA+TGG | 0.575220 | 1_3:-59729724 | Msa0129660:intron |
| TGATGAAGCAAATCGGTACA+TGG | 0.576970 | 1_3:+59730737 | None:intergenic |
| CCATATTTATACCTCGCCTC+AGG | 0.579496 | 1_3:+59729433 | None:intergenic |
| ATCCTAAATAAGCTTCGCGC+TGG | 0.588654 | 1_3:-59728144 | Msa0129660:CDS |
| CTTGGTTACGATGCCGCCAA+AGG | 0.591473 | 1_3:-59726591 | Msa0129660:intron |
| GAACTCAATGCTCTTAGCAA+CGG | 0.592114 | 1_3:+59729801 | None:intergenic |
| TGAGGCTGTTAAAGTAACCA+TGG | 0.596952 | 1_3:-59730170 | Msa0129660:CDS |
| TTTGATGCAATTGTGTGCAC+AGG | 0.599091 | 1_3:+59726672 | None:intergenic |
| CTCCCAAGTGAAGATAAAGA+TGG | 0.604022 | 1_3:-59726241 | Msa0129660:CDS |
| TTAATTTGTAATCATAGCAG+AGG | 0.609511 | 1_3:-59726078 | Msa0129660:three_prime_UTR |
| CCCGGACAAACTTCAAAGTG+TGG | 0.610608 | 1_3:+59725944 | None:intergenic |
| GGAGCTAGTGAAGCTGAAGT+TGG | 0.613860 | 1_3:-59727149 | Msa0129660:CDS |
| AGATGCCTTAAATGCAACAA+AGG | 0.621159 | 1_3:-59727105 | Msa0129660:CDS |
| ACAAAGGCAGCTGTAGAAGA+GGG | 0.622478 | 1_3:-59727089 | Msa0129660:CDS |
| TTCTCATGGATTATGATGAG+GGG | 0.622785 | 1_3:+59728360 | None:intergenic |
| AAGCTTATGCACCTTAAGCA+CGG | 0.623011 | 1_3:+59727278 | None:intergenic |
| GAGGCTGTTAAAGTAACCAT+GGG | 0.623740 | 1_3:-59730169 | Msa0129660:CDS |
| GTCCATCGCATTCATTCCAG+CGG | 0.625634 | 1_3:+59729455 | None:intergenic |
| TAAACCTTGATTAGAGAGAG+TGG | 0.632265 | 1_3:-59726151 | Msa0129660:three_prime_UTR |
| TAATTTGTAATCATAGCAGA+GGG | 0.633749 | 1_3:-59726077 | Msa0129660:three_prime_UTR |
| AGAGATCAAATTTGGCGTGG+AGG | 0.640072 | 1_3:-59730230 | Msa0129660:CDS |
| AGATTGGCCAAGCTTTCTGG+TGG | 0.640409 | 1_3:-59727306 | Msa0129660:CDS |
| TGCCGCTGGAATGAATGCGA+TGG | 0.642845 | 1_3:-59729457 | Msa0129660:CDS |
| AATGCTACCAATGATGTGGC+CGG | 0.647521 | 1_3:-59729730 | Msa0129660:CDS |
| TGCATAGGTTGGAAGTAGGG+TGG | 0.649750 | 1_3:-59730278 | Msa0129660:intron |
| AATACGGAGAAATATAGCCT+CGG | 0.650237 | 1_3:+59728762 | None:intergenic |
| GAATGAATGCGATGGACCTG+AGG | 0.657715 | 1_3:-59729449 | Msa0129660:CDS |
| TTACCTGGCTGCATCAACCA+AGG | 0.657815 | 1_3:+59726392 | None:intergenic |
| GGCATGGAACAGAAATTATG+CGG | 0.658021 | 1_3:-59730257 | Msa0129660:CDS |
| TTTGTGTCAACAGGAACTTG+AGG | 0.658510 | 1_3:-59728385 | Msa0129660:intron |
| CAATAGTTTACCAACAACAA+CGG | 0.661514 | 1_3:+59726632 | None:intergenic |
| TAAAGAGATCAAATTTGGCG+TGG | 0.674218 | 1_3:-59730233 | Msa0129660:CDS |
| AATGCGATGGACCTGAGGCG+AGG | 0.674402 | 1_3:-59729444 | Msa0129660:CDS |
| TGCTAATGCTACCAATGATG+TGG | 0.676684 | 1_3:-59729734 | Msa0129660:CDS |
| AGCAGAGGGACCAAATCTGT+AGG | 0.677964 | 1_3:-59726063 | Msa0129660:three_prime_UTR |
| TTTGCTCAATAACCACATTG+CGG | 0.693203 | 1_3:+59729860 | None:intergenic |
| GATCTCGCTGTTCTTACAGG+AGG | 0.694554 | 1_3:-59727955 | Msa0129660:CDS |
| CAAGCCTTAAGAGCAGAGCA+CGG | 0.696859 | 1_3:-59729392 | Msa0129660:CDS |
| TAGCACTTCAGATTATGACA+AGG | 0.707188 | 1_3:-59727343 | Msa0129660:CDS |
| GAAGGAATGAAGCTTGACCG+AGG | 0.708985 | 1_3:-59728779 | Msa0129660:CDS |
| GGGTGTTGAAGACCTCGCTG+AGG | 0.716699 | 1_3:-59730188 | Msa0129660:CDS |
| TTACTTTAACAGCCTCAGCG+AGG | 0.735881 | 1_3:+59730176 | None:intergenic |
| CCTGGCTGCATCAACCAAGG+CGG | 0.765340 | 1_3:+59726395 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCAATATTATTTATCT+GGG | - | chr1_3:59727406-59727425 | Msa0129660:intron | 10.0% |
| !!! | TGTACATTTTTTTTTTTTTT+TGG | + | chr1_3:59727508-59727527 | None:intergenic | 10.0% |
| !!! | TTTTCTGAAATTGTTAATAT+GGG | - | chr1_3:59725895-59725914 | Msa0129660:three_prime_UTR | 15.0% |
| !!! | ATTTGAACTTTTTCATTTAT+TGG | - | chr1_3:59725949-59725968 | Msa0129660:three_prime_UTR | 15.0% |
| !!! | TTTGAACTTTTTCATTTATT+GGG | - | chr1_3:59725950-59725969 | Msa0129660:three_prime_UTR | 15.0% |
| !!! | GCATTTGTTAATATTTTATT+TGG | - | chr1_3:59726114-59726133 | Msa0129660:three_prime_UTR | 15.0% |
| !!! | TGTCCTTTTATTTATTAAAT+TGG | - | chr1_3:59726576-59726595 | Msa0129660:intron | 15.0% |
| !! | ACACCAATTTAATAAATAAA+AGG | + | chr1_3:59726582-59726601 | None:intergenic | 15.0% |
| !!! | AATTTTAAAGCTAATAGTAT+AGG | - | chr1_3:59727174-59727193 | Msa0129660:intron | 15.0% |
| !! | CATTATCAATATTATTTATC+TGG | - | chr1_3:59727405-59727424 | Msa0129660:intron | 15.0% |
| !!! | TTAACTTAAAATTGCAATTT+TGG | - | chr1_3:59729763-59729782 | Msa0129660:CDS | 15.0% |
| !!! | GTTTTCTGAAATTGTTAATA+TGG | - | chr1_3:59725894-59725913 | Msa0129660:three_prime_UTR | 20.0% |
| !!! | TAAATTGTGTTTTTTGATGT+AGG | - | chr1_3:59726044-59726063 | Msa0129660:three_prime_UTR | 20.0% |
| !!! | TATCACTTTTCCTATTTTTA+GGG | - | chr1_3:59726620-59726639 | Msa0129660:CDS | 20.0% |
| !!! | ATTTTAAATTTTGCAATGTC+AGG | - | chr1_3:59727260-59727279 | Msa0129660:intron | 20.0% |
| !!! | TTTACATGTTTTATTGATCT+GGG | - | chr1_3:59727429-59727448 | Msa0129660:intron | 20.0% |
| !! | AAAAAAAAAATGTACACTAG+AGG | - | chr1_3:59727512-59727531 | Msa0129660:CDS | 20.0% |
| !! | TATTTACAACTATCATTTAC+AGG | + | chr1_3:59727909-59727928 | None:intergenic | 20.0% |
| !!! | ACACATGCAAAATTTTAATA+AGG | - | chr1_3:59727952-59727971 | Msa0129660:CDS | 20.0% |
| !! | TAACTCTAATACTTTAACTA+TGG | + | chr1_3:59728189-59728208 | None:intergenic | 20.0% |
| !!! | TCTTAGGTACTTTAAATTTT+TGG | - | chr1_3:59728424-59728443 | Msa0129660:intron | 20.0% |
| !! | ATAATCAAACAAAACAGTAA+GGG | + | chr1_3:59728880-59728899 | None:intergenic | 20.0% |
| !! | TATAATCAAACAAAACAGTA+AGG | + | chr1_3:59728881-59728900 | None:intergenic | 20.0% |
| !! | ATCTAAAAGATTAAGAAACT+TGG | + | chr1_3:59728933-59728952 | None:intergenic | 20.0% |
| !! | ACACATTTATCATATATGAT+TGG | + | chr1_3:59729495-59729514 | None:intergenic | 20.0% |
| !!! | TTAAAGCATTTTGGATAATT+TGG | + | chr1_3:59729608-59729627 | None:intergenic | 20.0% |
| !! | AATTATCCAAAATGCTTTAA+AGG | - | chr1_3:59729608-59729627 | Msa0129660:intron | 20.0% |
| !!! | TGCATTGTTTTAATTATAAC+AGG | + | chr1_3:59729807-59729826 | None:intergenic | 20.0% |
| !! | AGAAAAATGCTATAAAATAG+TGG | + | chr1_3:59730380-59730399 | None:intergenic | 20.0% |
| !! | CAATTTCTTACTAATTTAGA+GGG | + | chr1_3:59730536-59730555 | None:intergenic | 20.0% |
| !! | ACAATTTCTTACTAATTTAG+AGG | + | chr1_3:59730537-59730556 | None:intergenic | 20.0% |
| ! | GAATATCCAATTATCTTGAA+TGG | - | chr1_3:59726012-59726031 | Msa0129660:three_prime_UTR | 25.0% |
| ! | TTAGAACCATTCAAGATAAT+TGG | + | chr1_3:59726021-59726040 | None:intergenic | 25.0% |
| !!! | TTTTTTAATTTGGGTTGCAT+AGG | - | chr1_3:59726210-59726229 | Msa0129660:CDS | 25.0% |
| !! | CAAATCTTTTTCTTTCACAT+GGG | - | chr1_3:59726373-59726392 | Msa0129660:intron | 25.0% |
| ! | TTGGTAAATGTAGTAGAATA+AGG | - | chr1_3:59726416-59726435 | Msa0129660:CDS | 25.0% |
| ! | GCTTTATATAATGCTGATAA+TGG | - | chr1_3:59726458-59726477 | Msa0129660:intron | 25.0% |
| ! | AAAGTGATACATCAATAATC+AGG | + | chr1_3:59726609-59726628 | None:intergenic | 25.0% |
| !!! | GTATCACTTTTCCTATTTTT+AGG | - | chr1_3:59726619-59726638 | Msa0129660:CDS | 25.0% |
| !! | GTAAATCTACATCATTGATT+TGG | - | chr1_3:59726837-59726856 | Msa0129660:intron | 25.0% |
| !!! | ATTGATTTGGTTTTATCTCT+AGG | - | chr1_3:59726850-59726869 | Msa0129660:intron | 25.0% |
| ! | TTAAAATTTCACACAAACCT+GGG | + | chr1_3:59727162-59727181 | None:intergenic | 25.0% |
| !! | TTTAAAATTTCACACAAACC+TGG | + | chr1_3:59727163-59727182 | None:intergenic | 25.0% |
| ! | TAATAGTATAGGCATATTGT+AGG | - | chr1_3:59727185-59727204 | Msa0129660:intron | 25.0% |
| !!! | GTTTACATGTTTTATTGATC+TGG | - | chr1_3:59727428-59727447 | Msa0129660:intron | 25.0% |
| !!! | TTACATGTTTTATTGATCTG+GGG | - | chr1_3:59727430-59727449 | Msa0129660:intron | 25.0% |
| ! | AGAATTGTGAGAATAAATCA+AGG | + | chr1_3:59727541-59727560 | None:intergenic | 25.0% |
| !!! | TTCTGGTTTGTTATGAAATA+CGG | + | chr1_3:59727760-59727779 | None:intergenic | 25.0% |
| ! | ATAGAAAACATACACATTTC+TGG | + | chr1_3:59727786-59727805 | None:intergenic | 25.0% |
| !! | ATTTTTAATGCTGCTAATAG+AGG | + | chr1_3:59727814-59727833 | None:intergenic | 25.0% |
| ! | AAATAAGTAAAGCTACAGAT+AGG | + | chr1_3:59728402-59728421 | None:intergenic | 25.0% |
| ! | AGCTTTACTTATTTGTTCTT+AGG | - | chr1_3:59728408-59728427 | Msa0129660:intron | 25.0% |
| !!! | TTGATTTGTTTTTTGTTGCA+TGG | - | chr1_3:59728465-59728484 | Msa0129660:intron | 25.0% |
| !!! | GTTTTGTTTGATTATATGTG+AGG | - | chr1_3:59728885-59728904 | Msa0129660:intron | 25.0% |
| ! | ATGGTAAAATCAGATTGAAT+AGG | + | chr1_3:59729046-59729065 | None:intergenic | 25.0% |
| !! | TTTACCATTTTCATAGAGAT+TGG | - | chr1_3:59729058-59729077 | Msa0129660:intron | 25.0% |
| !! | TTACCATTTTCATAGAGATT+GGG | - | chr1_3:59729059-59729078 | Msa0129660:intron | 25.0% |
| !!! | TGATTTTTGATTTACAGATC+AGG | - | chr1_3:59729123-59729142 | Msa0129660:intron | 25.0% |
| ! | TTATGACAAGGATAAATTAC+AGG | - | chr1_3:59729172-59729191 | Msa0129660:CDS | 25.0% |
| !!! | TGCATAAGCTTATTTTAAGT+TGG | - | chr1_3:59729237-59729256 | Msa0129660:intron | 25.0% |
| !! | CTTATAAAAGAGCATAAGTA+AGG | + | chr1_3:59729267-59729286 | None:intergenic | 25.0% |
| ! | AATATTCTTAACATCTTACC+TGG | + | chr1_3:59730129-59730148 | None:intergenic | 25.0% |
| ! | AGATGTTAAGAATATTGCTT+TGG | - | chr1_3:59730133-59730152 | Msa0129660:intron | 25.0% |
| !! | TAAGAATATTGCTTTGGATA+TGG | - | chr1_3:59730139-59730158 | Msa0129660:intron | 25.0% |
| !!! | TTAATTTGTAATCATAGCAG+AGG | - | chr1_3:59730425-59730444 | Msa0129660:intron | 25.0% |
| !! | TAATTTGTAATCATAGCAGA+GGG | - | chr1_3:59730426-59730445 | Msa0129660:intron | 25.0% |
| GTGTAAAAGGGTAATTGAAA+AGG | + | chr1_3:59725849-59725868 | None:intergenic | 30.0% | |
| AATTGGATATTCAATCAACG+TGG | + | chr1_3:59726004-59726023 | None:intergenic | 30.0% | |
| !!! | TTTTTTGATGTAGGATTGCT+AGG | - | chr1_3:59726053-59726072 | Msa0129660:three_prime_UTR | 30.0% |
| ! | AAGATTTGCTTAGTTACCTT+AGG | + | chr1_3:59726361-59726380 | None:intergenic | 30.0% |
| ! | GCAAATCTTTTTCTTTCACA+TGG | - | chr1_3:59726372-59726391 | Msa0129660:intron | 30.0% |
| !!! | ACCAATTTTGATTGTAGGAA+TGG | - | chr1_3:59726531-59726550 | Msa0129660:intron | 30.0% |
| TCCATTCCTACAATCAAAAT+TGG | + | chr1_3:59726535-59726554 | None:intergenic | 30.0% | |
| AAGGATAAGGTCAAGAATAT+AGG | - | chr1_3:59726725-59726744 | Msa0129660:intron | 30.0% | |
| ! | CAAGAAAGTATAAACTTCCA+TGG | + | chr1_3:59726818-59726837 | None:intergenic | 30.0% |
| TTATTTGACTGAGTAATGAG+TGG | - | chr1_3:59726950-59726969 | Msa0129660:CDS | 30.0% | |
| ! | TTAAATTTTGCAATGTCAGG+TGG | - | chr1_3:59727263-59727282 | Msa0129660:intron | 30.0% |
| ! | TAAATTTTGCAATGTCAGGT+GGG | - | chr1_3:59727264-59727283 | Msa0129660:intron | 30.0% |
| AATTTCTCTATCTCCATTAG+CGG | + | chr1_3:59727298-59727317 | None:intergenic | 30.0% | |
| TGAGTTAATTGCAAAAGCTA+TGG | - | chr1_3:59727320-59727339 | Msa0129660:CDS | 30.0% | |
| ATTGTGAGAATAAATCAAGG+AGG | + | chr1_3:59727538-59727557 | None:intergenic | 30.0% | |
| TAAATAAAGAGTGACTAAGG+TGG | + | chr1_3:59727569-59727588 | None:intergenic | 30.0% | |
| ! | ATAATGGAGATGAAAAGAAG+TGG | + | chr1_3:59727593-59727612 | None:intergenic | 30.0% |
| TCATCTCCATTATCCTTTAA+AGG | - | chr1_3:59727600-59727619 | Msa0129660:intron | 30.0% | |
| ! | TGAACACCTTTAAAGGATAA+TGG | + | chr1_3:59727609-59727628 | None:intergenic | 30.0% |
| TCAAACATGAACACCTTTAA+AGG | + | chr1_3:59727616-59727635 | None:intergenic | 30.0% | |
| ! | TCAATAAAGGTCTTTGTTTC+TGG | + | chr1_3:59728298-59728317 | None:intergenic | 30.0% |
| TCTTCAGCAACAATCAATAA+AGG | + | chr1_3:59728311-59728330 | None:intergenic | 30.0% | |
| ! | ATTTAGGATAAGAGTTGCAA+GGG | + | chr1_3:59728348-59728367 | None:intergenic | 30.0% |
| ! | TATTTAGGATAAGAGTTGCA+AGG | + | chr1_3:59728349-59728368 | None:intergenic | 30.0% |
| TTTGGTGAAAATCGTAAATC+TGG | - | chr1_3:59728518-59728537 | Msa0129660:intron | 30.0% | |
| ! | AAAGTTGATCTGGAAATGTT+TGG | - | chr1_3:59728693-59728712 | Msa0129660:intron | 30.0% |
| GAAAATGCAACAATTAAGCT+AGG | + | chr1_3:59728739-59728758 | None:intergenic | 30.0% | |
| GATTAAGAAACTTGGTTAAG+TGG | + | chr1_3:59728925-59728944 | None:intergenic | 30.0% | |
| GGATAAATTACAGGAAAGAT+TGG | - | chr1_3:59729181-59729200 | Msa0129660:CDS | 30.0% | |
| ! | TAAAAGAGCATAAGTAAGGA+AGG | + | chr1_3:59729263-59729282 | None:intergenic | 30.0% |
| !! | GTTTTAGCACAAAAAAACCT+TGG | + | chr1_3:59729302-59729321 | None:intergenic | 30.0% |
| !! | GAAACTTGACTTTTGAAGAT+TGG | - | chr1_3:59729330-59729349 | Msa0129660:intron | 30.0% |
| !!! | CACAAACCTTTAAAGCATTT+TGG | + | chr1_3:59729617-59729636 | None:intergenic | 30.0% |
| !! | ATTGCACAATTTAGCCTTAA+AGG | + | chr1_3:59729706-59729725 | None:intergenic | 30.0% |
| CAATAGTTTACCAACAACAA+CGG | + | chr1_3:59729874-59729893 | None:intergenic | 30.0% | |
| ATTCACCTAAGCATGAAAAA+AGG | + | chr1_3:59730037-59730056 | None:intergenic | 30.0% | |
| CTTAGGTGAATATGTTGATA+TGG | - | chr1_3:59730046-59730065 | Msa0129660:intron | 30.0% | |
| TATGTTGATATGGTTAAAGC+TGG | - | chr1_3:59730056-59730075 | Msa0129660:intron | 30.0% | |
| TGGAATTATTGATCCATTGA+AGG | - | chr1_3:59730076-59730095 | Msa0129660:intron | 30.0% | |
| ! | ATTATTGCGGTGTTAAGTAA+AGG | + | chr1_3:59730189-59730208 | None:intergenic | 30.0% |
| TGGTTATTAGTAGATGAATC+TGG | - | chr1_3:59730318-59730337 | Msa0129660:intron | 30.0% | |
| AAGGTCTGTGAAACCAAAAA+AGG | + | chr1_3:59725830-59725849 | None:intergenic | 35.0% | |
| !! | TTAATTTGGGTTGCATAGGT+TGG | - | chr1_3:59726214-59726233 | Msa0129660:CDS | 35.0% |
| TAAAGAGATCAAATTTGGCG+TGG | - | chr1_3:59726270-59726289 | Msa0129660:CDS | 35.0% | |
| !!! | TGAGCACCAATTTTGATTGT+AGG | - | chr1_3:59726526-59726545 | Msa0129660:intron | 35.0% |
| TTTGCTCAATAACCACATTG+CGG | + | chr1_3:59726646-59726665 | None:intergenic | 35.0% | |
| ! | GTGGTTATTGAGCAAAGTTT+TGG | - | chr1_3:59726650-59726669 | Msa0129660:CDS | 35.0% |
| ATAAAACAGCTTACCATCAC+CGG | + | chr1_3:59726795-59726814 | None:intergenic | 35.0% | |
| !! | ATGGTAAGCTGTTTTATCCA+TGG | - | chr1_3:59726798-59726817 | Msa0129660:intron | 35.0% |
| CTAGGACATGATATAGATGT+TGG | - | chr1_3:59726868-59726887 | Msa0129660:intron | 35.0% | |
| ! | AAATTTTGCAATGTCAGGTG+GGG | - | chr1_3:59727265-59727284 | Msa0129660:intron | 35.0% |
| GCTAATGGAGATAGAGAAAT+TGG | - | chr1_3:59727297-59727316 | Msa0129660:CDS | 35.0% | |
| GGCTAAATAAAGAGTGACTA+AGG | + | chr1_3:59727572-59727591 | None:intergenic | 35.0% | |
| AATACGGAGAAATATAGCCT+CGG | + | chr1_3:59727744-59727763 | None:intergenic | 35.0% | |
| !! | ATACACATTTCTGGTTCTTC+TGG | + | chr1_3:59727777-59727796 | None:intergenic | 35.0% |
| ! | AAGTCATCCCCGTTATATTT+TGG | - | chr1_3:59727975-59727994 | Msa0129660:CDS | 35.0% |
| ! | AGTCATCCCCGTTATATTTT+GGG | - | chr1_3:59727976-59727995 | Msa0129660:CDS | 35.0% |
| ! | TTCTCATGGATTATGATGAG+GGG | + | chr1_3:59728146-59728165 | None:intergenic | 35.0% |
| ! | CTTCTCATGGATTATGATGA+GGG | + | chr1_3:59728147-59728166 | None:intergenic | 35.0% |
| ! | TCTTCTCATGGATTATGATG+AGG | + | chr1_3:59728148-59728167 | None:intergenic | 35.0% |
| AACTTGAGATCTTCTTCTCA+TGG | + | chr1_3:59728160-59728179 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGTTGCATGGTCTT+AGG | - | chr1_3:59728472-59728491 | Msa0129660:intron | 35.0% |
| ! | TACGATTTTCACCAAAACCA+GGG | + | chr1_3:59728514-59728533 | None:intergenic | 35.0% |
| ! | TTACGATTTTCACCAAAACC+AGG | + | chr1_3:59728515-59728534 | None:intergenic | 35.0% |
| !!! | CATCAGCTTTTAAGATTGGA+GGG | + | chr1_3:59728615-59728634 | None:intergenic | 35.0% |
| !!! | CATCCATCAGCTTTTAAGAT+TGG | + | chr1_3:59728619-59728638 | None:intergenic | 35.0% |
| GATCAACTTTCTCAAGATTG+TGG | + | chr1_3:59728683-59728702 | None:intergenic | 35.0% | |
| ! | CAATCTTGAGAAAGTTGATC+TGG | - | chr1_3:59728683-59728702 | Msa0129660:intron | 35.0% |
| !! | AATGTTTGGCTCTTGCAAAA+AGG | - | chr1_3:59728707-59728726 | Msa0129660:intron | 35.0% |
| AATGCAACAATTAAGCTAGG+TGG | + | chr1_3:59728736-59728755 | None:intergenic | 35.0% | |
| ! | TGAGTTCTAGTACTCTTTCT+TGG | - | chr1_3:59728768-59728787 | Msa0129660:CDS | 35.0% |
| GGTTATTGTTCATGATTGCT+TGG | - | chr1_3:59728789-59728808 | Msa0129660:CDS | 35.0% | |
| ! | TGTTCATGATTGCTTGGTTT+TGG | - | chr1_3:59728795-59728814 | Msa0129660:CDS | 35.0% |
| AAGAATGACAGTGTCATCTT+TGG | + | chr1_3:59728964-59728983 | None:intergenic | 35.0% | |
| TGGTGATAAGAAAGCTATTG+AGG | - | chr1_3:59728992-59729011 | Msa0129660:intron | 35.0% | |
| TAGCACTTCAGATTATGACA+AGG | - | chr1_3:59729160-59729179 | Msa0129660:CDS | 35.0% | |
| !! | ACTTGACTTTTGAAGATTGG+AGG | - | chr1_3:59729333-59729352 | Msa0129660:intron | 35.0% |
| AGATGCCTTAAATGCAACAA+AGG | - | chr1_3:59729398-59729417 | Msa0129660:CDS | 35.0% | |
| GTCAGTGCTAATAATTTACC+AGG | + | chr1_3:59729447-59729466 | None:intergenic | 35.0% | |
| !! | GCCAATTTTGATCAGAAGAT+AGG | - | chr1_3:59729579-59729598 | Msa0129660:intron | 35.0% |
| GCCTATCTTCTGATCAAAAT+TGG | + | chr1_3:59729583-59729602 | None:intergenic | 35.0% | |
| !! | CAATTTAGCCTTAAAGGAAC+CGG | + | chr1_3:59729700-59729719 | None:intergenic | 35.0% |
| !! | TTTGCCTTTAAGACACACTA+CGG | - | chr1_3:59729739-59729758 | Msa0129660:CDS | 35.0% |
| TAAACCGTAGTGTGTCTTAA+AGG | + | chr1_3:59729746-59729765 | None:intergenic | 35.0% | |
| ! | CGTTGTTGTTGGTAAACTAT+TGG | - | chr1_3:59729872-59729891 | Msa0129660:intron | 35.0% |
| ! | TGTTGGTAAACTATTGGAAC+AGG | - | chr1_3:59729878-59729897 | Msa0129660:intron | 35.0% |
| AAGTAAACACGGCAAAGAAA+AGG | + | chr1_3:59729955-59729974 | None:intergenic | 35.0% | |
| CCTTGTGACAAAAGTAAACA+CGG | + | chr1_3:59729966-59729985 | None:intergenic | 35.0% | |
| GCATGAAAAAAGGTTGACAA+GGG | + | chr1_3:59730027-59730046 | None:intergenic | 35.0% | |
| AGCATGAAAAAAGGTTGACA+AGG | + | chr1_3:59730028-59730047 | None:intergenic | 35.0% | |
| !!! | GTCAACCTTTTTTCATGCTT+AGG | - | chr1_3:59730029-59730048 | Msa0129660:intron | 35.0% |
| TTGATCCATTGAAGGTGATT+AGG | - | chr1_3:59730084-59730103 | Msa0129660:intron | 35.0% | |
| ACACTGCAGGAAAATTATTG+CGG | + | chr1_3:59730202-59730221 | None:intergenic | 35.0% | |
| GACCATCTTTATCTTCACTT+GGG | + | chr1_3:59730267-59730286 | None:intergenic | 35.0% | |
| TAAACCTTGATTAGAGAGAG+TGG | - | chr1_3:59730352-59730371 | Msa0129660:intron | 35.0% | |
| ! | TTTCTTGTTGTCTTTCTAGC+TGG | - | chr1_3:59730642-59730661 | Msa0129660:intron | 35.0% |
| AGCTGGATAAGTACTTCTTA+TGG | - | chr1_3:59730659-59730678 | Msa0129660:intron | 35.0% | |
| AGGCAAGTGATGAAGCAAAT+CGG | + | chr1_3:59725776-59725795 | None:intergenic | 40.0% | |
| ! | ATTGATGACTTACCGAGCTT+TGG | + | chr1_3:59725799-59725818 | None:intergenic | 40.0% |
| AAAGCTCGGTAAGTCATCAA+TGG | - | chr1_3:59725798-59725817 | Msa0129660:three_prime_UTR | 40.0% | |
| !!! | TCAATGGCAGTGTCCTTTTT+TGG | - | chr1_3:59725814-59725833 | Msa0129660:three_prime_UTR | 40.0% |
| TGCTAGGAACAATGTTCAAC+AGG | - | chr1_3:59726069-59726088 | Msa0129660:three_prime_UTR | 40.0% | |
| GGCATGGAACAGAAATTATG+CGG | - | chr1_3:59726246-59726265 | Msa0129660:CDS | 40.0% | |
| GCGGCTAAAGAGATCAAATT+TGG | - | chr1_3:59726265-59726284 | Msa0129660:CDS | 40.0% | |
| TGAGGCTGTTAAAGTAACCA+TGG | - | chr1_3:59726333-59726352 | Msa0129660:intron | 40.0% | |
| GAGGCTGTTAAAGTAACCAT+GGG | - | chr1_3:59726334-59726353 | Msa0129660:intron | 40.0% | |
| TAAAGTAACCATGGGTCCTA+AGG | - | chr1_3:59726342-59726361 | Msa0129660:intron | 40.0% | |
| !! | TTTCTTTCACATGGGTTAGC+AGG | - | chr1_3:59726381-59726400 | Msa0129660:intron | 40.0% |
| !! | TTCTTTCACATGGGTTAGCA+GGG | - | chr1_3:59726382-59726401 | Msa0129660:intron | 40.0% |
| TAGCAGGGGTAAGATATCTT+TGG | - | chr1_3:59726397-59726416 | Msa0129660:CDS | 40.0% | |
| TCGTGTTCATTCTCATCAAG+AGG | - | chr1_3:59726501-59726520 | Msa0129660:intron | 40.0% | |
| ! | ACTCCATCTTTGGTCACTTT+AGG | + | chr1_3:59726680-59726699 | None:intergenic | 40.0% |
| GAACTCAATGCTCTTAGCAA+CGG | + | chr1_3:59726705-59726724 | None:intergenic | 40.0% | |
| !! | TGCTAAGAGCATTGAGTTCA+AGG | - | chr1_3:59726706-59726725 | Msa0129660:intron | 40.0% |
| !! | GAGCATTGAGTTCAAGGATA+AGG | - | chr1_3:59726712-59726731 | Msa0129660:intron | 40.0% |
| TGCTAATGCTACCAATGATG+TGG | - | chr1_3:59726769-59726788 | Msa0129660:intron | 40.0% | |
| TGAGTGGTCTAAATGTTTGC+AGG | - | chr1_3:59726966-59726985 | Msa0129660:CDS | 40.0% | |
| ! | ACTCGAGCAATATTTTCCGA+AGG | - | chr1_3:59727011-59727030 | Msa0129660:intron | 40.0% |
| GACTGTGAGTCGTGAATTAT+TGG | - | chr1_3:59727227-59727246 | Msa0129660:intron | 40.0% | |
| ! | TCTATCTCCATTAGCGGATA+TGG | + | chr1_3:59727292-59727311 | None:intergenic | 40.0% |
| GCAAAAGCTATGGAGAAAGT+TGG | - | chr1_3:59727330-59727349 | Msa0129660:CDS | 40.0% | |
| ATGGAGAAAGTTGGCAAAGA+AGG | - | chr1_3:59727339-59727358 | Msa0129660:CDS | 40.0% | |
| !! | TGTTTTATTGATCTGGGGAC+TGG | - | chr1_3:59727435-59727454 | Msa0129660:intron | 40.0% |
| !! | GTTTTATTGATCTGGGGACT+GGG | - | chr1_3:59727436-59727455 | Msa0129660:intron | 40.0% |
| ! | TCTAACTTTTGAGCTATGCC+AGG | - | chr1_3:59727666-59727685 | Msa0129660:intron | 40.0% |
| ! | AACGAGTTGGAAGTTGTTGA+AGG | - | chr1_3:59727706-59727725 | Msa0129660:intron | 40.0% |
| ! | GTCATCCCCGTTATATTTTG+GGG | - | chr1_3:59727977-59727996 | Msa0129660:CDS | 40.0% |
| TGTCGTCTATTTGTGTCAAC+AGG | - | chr1_3:59728109-59728128 | Msa0129660:intron | 40.0% | |
| TTTGTGTCAACAGGAACTTG+AGG | - | chr1_3:59728118-59728137 | Msa0129660:intron | 40.0% | |
| ! | ACGATTTTCACCAAAACCAG+GGG | + | chr1_3:59728513-59728532 | None:intergenic | 40.0% |
| AAATCGTAAATCTGGTCTCC+AGG | - | chr1_3:59728526-59728545 | Msa0129660:intron | 40.0% | |
| !!! | CCATCAGCTTTTAAGATTGG+AGG | + | chr1_3:59728616-59728635 | None:intergenic | 40.0% |
| CCTCCAATCTTAAAAGCTGA+TGG | - | chr1_3:59728613-59728632 | Msa0129660:intron | 40.0% | |
| !!! | TGATTGCTTGGTTTTGGCAA+AGG | - | chr1_3:59728801-59728820 | Msa0129660:CDS | 40.0% |
| GATGACACTGTCATTCTTGA+CGG | - | chr1_3:59728966-59728985 | Msa0129660:intron | 40.0% | |
| TATTGAGGAAAGATGTGAGC+AGG | - | chr1_3:59729007-59729026 | Msa0129660:intron | 40.0% | |
| CAGCCCAATCTCTATGAAAA+TGG | + | chr1_3:59729065-59729084 | None:intergenic | 40.0% | |
| AAGCTTATGCACCTTAAGCA+CGG | + | chr1_3:59729228-59729247 | None:intergenic | 40.0% | |
| ATAAGCTGTTGAGCATTCCA+AGG | - | chr1_3:59729282-59729301 | Msa0129660:intron | 40.0% | |
| !! | AGCTGAAGTTGGTGAGAAAA+AGG | - | chr1_3:59729365-59729384 | Msa0129660:CDS | 40.0% |
| AGCTGCCTTTGTTGCATTTA+AGG | + | chr1_3:59729406-59729425 | None:intergenic | 40.0% | |
| ! | GATAAATGTGTGTTTTGCGC+AGG | - | chr1_3:59729504-59729523 | Msa0129660:CDS | 40.0% |
| !!! | TCTGCACTGTCACTGATTTT+TGG | - | chr1_3:59729640-59729659 | Msa0129660:intron | 40.0% |
| TCTTCTTTCTCCTCTCTTAC+CGG | - | chr1_3:59729678-59729697 | Msa0129660:intron | 40.0% | |
| TTTGATGCAATTGTGTGCAC+AGG | + | chr1_3:59729834-59729853 | None:intergenic | 40.0% | |
| CACACAATTGCATCAAATGC+TGG | - | chr1_3:59729837-59729856 | Msa0129660:CDS | 40.0% | |
| GAACAGGATAATCCTGATCT+TGG | - | chr1_3:59729894-59729913 | Msa0129660:intron | 40.0% | |
| GAAAAAGGAACACTGACCTT+TGG | + | chr1_3:59729931-59729950 | None:intergenic | 40.0% | |
| CGGCAAAGAAAAGGAGAAAA+AGG | + | chr1_3:59729946-59729965 | None:intergenic | 40.0% | |
| !! | CCGTGTTTACTTTTGTCACA+AGG | - | chr1_3:59729963-59729982 | Msa0129660:intron | 40.0% |
| CATCAAAGATGATACACTGC+AGG | + | chr1_3:59730215-59730234 | None:intergenic | 40.0% | |
| CTCCCAAGTGAAGATAAAGA+TGG | - | chr1_3:59730262-59730281 | Msa0129660:CDS | 40.0% | |
| GGACCATCTTTATCTTCACT+TGG | + | chr1_3:59730268-59730287 | None:intergenic | 40.0% | |
| GCTTAGTGTTTACTGACAGA+AGG | - | chr1_3:59730400-59730419 | Msa0129660:intron | 40.0% | |
| ACCAAATCTGTAGGTTAGAG+AGG | - | chr1_3:59730449-59730468 | Msa0129660:intron | 40.0% | |
| TCCTCTCTAACCTACAGATT+TGG | + | chr1_3:59730453-59730472 | None:intergenic | 40.0% | |
| !! | TCCACACTTTGAAGTTTGTC+CGG | - | chr1_3:59730558-59730577 | Msa0129660:intron | 40.0% |
| TCCATCTGACGCGTGTAAAA+GGG | + | chr1_3:59725861-59725880 | None:intergenic | 45.0% | |
| ATCCATCTGACGCGTGTAAA+AGG | + | chr1_3:59725862-59725881 | None:intergenic | 45.0% | |
| GGATATTCAATCAACGTGGC+TGG | + | chr1_3:59726000-59726019 | None:intergenic | 45.0% | |
| ! | GGTTGCATAGGTTGGAAGTA+GGG | - | chr1_3:59726222-59726241 | Msa0129660:CDS | 45.0% |
| AGAGATCAAATTTGGCGTGG+AGG | - | chr1_3:59726273-59726292 | Msa0129660:CDS | 45.0% | |
| GCTCGTGCTTTGATGCTTAA+GGG | - | chr1_3:59726295-59726314 | Msa0129660:intron | 45.0% | |
| TTACTTTAACAGCCTCAGCG+AGG | + | chr1_3:59726330-59726349 | None:intergenic | 45.0% | |
| CTTAGTTACCTTAGGACCCA+TGG | + | chr1_3:59726353-59726372 | None:intergenic | 45.0% | |
| !! | TCTTTCACATGGGTTAGCAG+GGG | - | chr1_3:59726383-59726402 | Msa0129660:intron | 45.0% |
| CACATTGCGGCCCTAAAAAT+AGG | + | chr1_3:59726633-59726652 | None:intergenic | 45.0% | |
| !!! | CTATTTTTAGGGCCGCAATG+TGG | - | chr1_3:59726631-59726650 | Msa0129660:CDS | 45.0% |
| GCTCCTAAAGTGACCAAAGA+TGG | - | chr1_3:59726674-59726693 | Msa0129660:CDS | 45.0% | |
| AGCAACGGTTACTCCATCTT+TGG | + | chr1_3:59726690-59726709 | None:intergenic | 45.0% | |
| AGCAACCTGCTTTACAAGAC+TGG | + | chr1_3:59726753-59726772 | None:intergenic | 45.0% | |
| AATGCTACCAATGATGTGGC+CGG | - | chr1_3:59726773-59726792 | Msa0129660:intron | 45.0% | |
| CCATATTTATACCTCGCCTC+AGG | + | chr1_3:59727073-59727092 | None:intergenic | 45.0% | |
| CCTGAGGCGAGGTATAAATA+TGG | - | chr1_3:59727070-59727089 | Msa0129660:intron | 45.0% | |
| ! | CACTTCTGAAGAAATAGCCC+AGG | - | chr1_3:59727142-59727161 | Msa0129660:CDS | 45.0% |
| AGGAGATGTAGTGAGCAAGA+AGG | - | chr1_3:59727205-59727224 | Msa0129660:intron | 45.0% | |
| TATGCCATGCACTCTCATAC+TGG | - | chr1_3:59727641-59727660 | Msa0129660:intron | 45.0% | |
| ATGCCATGCACTCTCATACT+GGG | - | chr1_3:59727642-59727661 | Msa0129660:intron | 45.0% | |
| ! | ACTTTTGAGCTATGCCAGGA+TGG | - | chr1_3:59727670-59727689 | Msa0129660:intron | 45.0% |
| CAAGACATTGCACAACGAGT+TGG | - | chr1_3:59727693-59727712 | Msa0129660:intron | 45.0% | |
| !! | GGTCTTTGTTTCTGGTGATG+AGG | + | chr1_3:59728290-59728309 | None:intergenic | 45.0% |
| ATCCTAAATAAGCTTCGCGC+TGG | - | chr1_3:59728359-59728378 | Msa0129660:CDS | 45.0% | |
| TTCCAGCGCGAAGCTTATTT+AGG | + | chr1_3:59728364-59728383 | None:intergenic | 45.0% | |
| CAGCTTATCACTGAAGACCT+TGG | - | chr1_3:59728657-59728676 | Msa0129660:intron | 45.0% | |
| CTTTCTCAAGATTGTGGCCA+AGG | + | chr1_3:59728677-59728696 | None:intergenic | 45.0% | |
| ! | GAAAGATTGGCCAAGCTTTC+TGG | - | chr1_3:59729194-59729213 | Msa0129660:CDS | 45.0% |
| AACAAAGGCAGCTGTAGAAG+AGG | - | chr1_3:59729413-59729432 | Msa0129660:CDS | 45.0% | |
| ACAAAGGCAGCTGTAGAAGA+GGG | - | chr1_3:59729414-59729433 | Msa0129660:CDS | 45.0% | |
| ! | AAATGTGTGTTTTGCGCAGG+TGG | - | chr1_3:59729507-59729526 | Msa0129660:CDS | 45.0% |
| CTTAAAGGAACCGGTAAGAG+AGG | + | chr1_3:59729691-59729710 | None:intergenic | 45.0% | |
| !! | CTCTCTTACCGGTTCCTTTA+AGG | - | chr1_3:59729689-59729708 | Msa0129660:intron | 45.0% |
| TGCATCAAATGCTGGAGTTG+AGG | - | chr1_3:59729845-59729864 | Msa0129660:CDS | 45.0% | |
| GCATCAAATGCTGGAGTTGA+GGG | - | chr1_3:59729846-59729865 | Msa0129660:CDS | 45.0% | |
| AAAGGAACACTGACCTTTGG+CGG | + | chr1_3:59729928-59729947 | None:intergenic | 45.0% | |
| GGTACCACTCTCTCTAATCA+AGG | + | chr1_3:59730359-59730378 | None:intergenic | 45.0% | |
| !! | CCACACTTTGAAGTTTGTCC+GGG | - | chr1_3:59730559-59730578 | Msa0129660:intron | 45.0% |
| AACCTTTCACGTGAAAAGCC+CGG | + | chr1_3:59730580-59730599 | None:intergenic | 45.0% | |
| !!! | TTATTCATTTTTTTTTAATT+TGG | - | chr1_3:59726200-59726219 | Msa0129660:CDS | 5.0% |
| !!! | TATTCATTTTTTTTTAATTT+GGG | - | chr1_3:59726201-59726220 | Msa0129660:CDS | 5.0% |
| !! | TAAATAATACTTTATATTAT+AGG | - | chr1_3:59727923-59727942 | Msa0129660:intron | 5.0% |
| CATCACTTGCCTCCAAAGCT+CGG | - | chr1_3:59725784-59725803 | Msa0129660:three_prime_UTR | 50.0% | |
| ! | GATGACTTACCGAGCTTTGG+AGG | + | chr1_3:59725796-59725815 | None:intergenic | 50.0% |
| ! | ACCCTTTTACACGCGTCAGA+TGG | - | chr1_3:59725857-59725876 | Msa0129660:three_prime_UTR | 50.0% |
| ! | GGGTTGCATAGGTTGGAAGT+AGG | - | chr1_3:59726221-59726240 | Msa0129660:CDS | 50.0% |
| ! | TGCATAGGTTGGAAGTAGGG+TGG | - | chr1_3:59726225-59726244 | Msa0129660:CDS | 50.0% |
| GGCTCGTGCTTTGATGCTTA+AGG | - | chr1_3:59726294-59726313 | Msa0129660:intron | 50.0% | |
| ! | AGGTGCCAGTCTTGTAAAGC+AGG | - | chr1_3:59726745-59726764 | Msa0129660:intron | 50.0% |
| !! | GGCAACTGATTTGCAGCCTT+CGG | + | chr1_3:59727030-59727049 | None:intergenic | 50.0% |
| GTCCATCGCATTCATTCCAG+CGG | + | chr1_3:59727051-59727070 | None:intergenic | 50.0% | |
| GAATGAATGCGATGGACCTG+AGG | - | chr1_3:59727054-59727073 | Msa0129660:intron | 50.0% | |
| CAAGCCTTAAGAGCAGAGCA+CGG | - | chr1_3:59727111-59727130 | Msa0129660:CDS | 50.0% | |
| TCATCCGTGCTCTGCTCTTA+AGG | + | chr1_3:59727118-59727137 | None:intergenic | 50.0% | |
| ! | GATCCCAGTATGAGAGTGCA+TGG | + | chr1_3:59727648-59727667 | None:intergenic | 50.0% |
| TGTGCAATGTCTTGCCATCC+TGG | + | chr1_3:59727687-59727706 | None:intergenic | 50.0% | |
| GAAGGAATGAAGCTTGACCG+AGG | - | chr1_3:59727724-59727743 | Msa0129660:intron | 50.0% | |
| !!! | TCCCCGTTATATTTTGGGGC+TGG | - | chr1_3:59727981-59728000 | Msa0129660:CDS | 50.0% |
| GCCAGCCCCAAAATATAACG+GGG | + | chr1_3:59727985-59728004 | None:intergenic | 50.0% | |
| CGCCAGCCCCAAAATATAAC+GGG | + | chr1_3:59727986-59728005 | None:intergenic | 50.0% | |
| CCGCCAGCCCCAAAATATAA+CGG | + | chr1_3:59727987-59728006 | None:intergenic | 50.0% | |
| !!! | CCGTTATATTTTGGGGCTGG+CGG | - | chr1_3:59727984-59728003 | Msa0129660:CDS | 50.0% |
| TAAGCTTCGCGCTGGAATCA+AGG | - | chr1_3:59728367-59728386 | Msa0129660:CDS | 50.0% | |
| ! | ACCAAAACCAGGGGCTTTGA+TGG | + | chr1_3:59728504-59728523 | None:intergenic | 50.0% |
| CTGTAAGAACAGCGAGATCC+TGG | + | chr1_3:59728547-59728566 | None:intergenic | 50.0% | |
| CAGGATCTCGCTGTTCTTAC+AGG | - | chr1_3:59728545-59728564 | Msa0129660:intron | 50.0% | |
| GATCTCGCTGTTCTTACAGG+AGG | - | chr1_3:59728548-59728567 | Msa0129660:intron | 50.0% | |
| GAGCTAATGCACATCACTCG+AGG | + | chr1_3:59728838-59728857 | None:intergenic | 50.0% | |
| ACTGTCATTCTTGACGGTGC+TGG | - | chr1_3:59728972-59728991 | Msa0129660:intron | 50.0% | |
| ! | AGATTGGCCAAGCTTTCTGG+TGG | - | chr1_3:59729197-59729216 | Msa0129660:CDS | 50.0% |
| GGAGCTAGTGAAGCTGAAGT+TGG | - | chr1_3:59729354-59729373 | Msa0129660:intron | 50.0% | |
| ! | GTAGAAGAGGGCATAGTACC+TGG | - | chr1_3:59729426-59729445 | Msa0129660:CDS | 50.0% |
| GCGGTCCTAATCACCTTCAA+TGG | + | chr1_3:59730092-59730111 | None:intergenic | 50.0% | |
| TTACCTGGCTGCATCAACCA+AGG | + | chr1_3:59730114-59730133 | None:intergenic | 50.0% | |
| AGCAGAGGGACCAAATCTGT+AGG | - | chr1_3:59730440-59730459 | Msa0129660:CDS | 50.0% | |
| CCCGGACAAACTTCAAAGTG+TGG | + | chr1_3:59730562-59730581 | None:intergenic | 50.0% | |
| AGGTTGGAAGTAGGGTGGCA+TGG | - | chr1_3:59726230-59726249 | Msa0129660:CDS | 55.0% | |
| ACCAATGATGTGGCCGGTGA+TGG | - | chr1_3:59726779-59726798 | Msa0129660:intron | 55.0% | |
| ACCATCACCGGCCACATCAT+TGG | + | chr1_3:59726783-59726802 | None:intergenic | 55.0% | |
| TGCCGCTGGAATGAATGCGA+TGG | - | chr1_3:59727046-59727065 | Msa0129660:intron | 55.0% | |
| GTGGGGACCATATCCGCTAA+TGG | - | chr1_3:59727282-59727301 | Msa0129660:intron | 55.0% | |
| ! | GCCATCAAAGCCCCTGGTTT+TGG | - | chr1_3:59728500-59728519 | Msa0129660:intron | 55.0% |
| GGCAACACCACCAGAAAGCT+TGG | + | chr1_3:59729207-59729226 | None:intergenic | 55.0% | |
| !! | TGGTGGTGTTGCCGTGCTTA+AGG | - | chr1_3:59729214-59729233 | Msa0129660:CDS | 55.0% |
| ! | TGTGTGTTTTGCGCAGGTGG+TGG | - | chr1_3:59729510-59729529 | Msa0129660:CDS | 55.0% |
| !! | GTTGAGGGTGCCGTTGTTGT+TGG | - | chr1_3:59729861-59729880 | Msa0129660:CDS | 55.0% |
| GCGGCATCGTAACCAAGATC+AGG | + | chr1_3:59729909-59729928 | None:intergenic | 55.0% | |
| CTTGGTTACGATGCCGCCAA+AGG | - | chr1_3:59729912-59729931 | Msa0129660:intron | 55.0% | |
| GAAGGTGATTAGGACCGCCT+TGG | - | chr1_3:59730094-59730113 | Msa0129660:intron | 55.0% | |
| ! | GTCCGGGCTTTTCACGTGAA+AGG | - | chr1_3:59730575-59730594 | Msa0129660:intron | 55.0% |
| !! | GGGTGTTGAAGACCTCGCTG+AGG | - | chr1_3:59726315-59726334 | Msa0129660:intron | 60.0% |
| GGCTGCAAATCAGTTGCCGC+TGG | - | chr1_3:59727032-59727051 | Msa0129660:intron | 60.0% | |
| AATGCGATGGACCTGAGGCG+AGG | - | chr1_3:59727059-59727078 | Msa0129660:intron | 60.0% | |
| GTGTGTGCCATCAAAGCCCC+TGG | - | chr1_3:59728494-59728513 | Msa0129660:intron | 60.0% | |
| CCTGGCTGCATCAACCAAGG+CGG | + | chr1_3:59730111-59730130 | None:intergenic | 60.0% | |
| GATGGTCCTGCTATGCCTGC+TGG | - | chr1_3:59730280-59730299 | Msa0129660:intron | 60.0% | |
| TCCTGCTATGCCTGCTGGCA+TGG | - | chr1_3:59730285-59730304 | Msa0129660:intron | 60.0% | |
| CCTGCTATGCCTGCTGGCAT+GGG | - | chr1_3:59730286-59730305 | Msa0129660:intron | 60.0% | |
| ! | CCGCCTTGGTTGATGCAGCC+AGG | - | chr1_3:59730108-59730127 | Msa0129660:intron | 65.0% |
| CCCATGCCAGCAGGCATAGC+AGG | + | chr1_3:59730289-59730308 | None:intergenic | 65.0% | |
| GCTATGCCTGCTGGCATGGG+TGG | - | chr1_3:59730289-59730308 | Msa0129660:intron | 65.0% | |
| CCTGCTGGCATGGGTGGCAT+GGG | - | chr1_3:59730295-59730314 | Msa0129660:intron | 65.0% | |
| GCCTGCTGGCATGGGTGGCA+TGG | - | chr1_3:59730294-59730313 | Msa0129660:intron | 70.0% | |
| CCCATGCCACCCATGCCAGC+AGG | + | chr1_3:59730298-59730317 | None:intergenic | 70.0% | |
| GCTGGCATGGGTGGCATGGG+TGG | - | chr1_3:59730298-59730317 | Msa0129660:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59725768 | 59730757 | 59725768 | ID=Msa0129660;Name=Msa0129660 |
| chr1_3 | mRNA | 59725768 | 59730757 | 59725768 | ID=Msa0129660-mRNA-1;Parent=Msa0129660;Name=Msa0129660-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.05|0.05|1|1|1|18|430|576 |
| chr1_3 | exon | 59725768 | 59726306 | 59725768 | ID=Msa0129660-mRNA-1:exon:19531;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59726396 | 59726474 | 59726396 | ID=Msa0129660-mRNA-1:exon:19530;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59726592 | 59726697 | 59726592 | ID=Msa0129660-mRNA-1:exon:19529;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59726896 | 59726999 | 59726896 | ID=Msa0129660-mRNA-1:exon:19528;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59727078 | 59727177 | 59727078 | ID=Msa0129660-mRNA-1:exon:19527;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59727290 | 59727385 | 59727290 | ID=Msa0129660-mRNA-1:exon:19526;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59727497 | 59727574 | 59727497 | ID=Msa0129660-mRNA-1:exon:19525;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59727797 | 59727865 | 59727797 | ID=Msa0129660-mRNA-1:exon:19524;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59727951 | 59728031 | 59727951 | ID=Msa0129660-mRNA-1:exon:19523;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59728137 | 59728226 | 59728137 | ID=Msa0129660-mRNA-1:exon:19522;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59728308 | 59728394 | 59728308 | ID=Msa0129660-mRNA-1:exon:19521;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59728733 | 59728837 | 59728733 | ID=Msa0129660-mRNA-1:exon:19520;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59729148 | 59729243 | 59729148 | ID=Msa0129660-mRNA-1:exon:19519;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59729362 | 59729537 | 59729362 | ID=Msa0129660-mRNA-1:exon:19518;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59729725 | 59729884 | 59729725 | ID=Msa0129660-mRNA-1:exon:19517;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59730162 | 59730293 | 59730162 | ID=Msa0129660-mRNA-1:exon:19516;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59730435 | 59730459 | 59730435 | ID=Msa0129660-mRNA-1:exon:19515;Parent=Msa0129660-mRNA-1 |
| chr1_3 | exon | 59730720 | 59730757 | 59730720 | ID=Msa0129660-mRNA-1:exon:19514;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59730720 | 59730757 | 59730720 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59730435 | 59730459 | 59730435 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59730162 | 59730293 | 59730162 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59729725 | 59729884 | 59729725 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59729362 | 59729537 | 59729362 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59729148 | 59729243 | 59729148 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59728733 | 59728837 | 59728733 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59728308 | 59728394 | 59728308 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59728137 | 59728226 | 59728137 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59727951 | 59728031 | 59727951 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59727797 | 59727865 | 59727797 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59727497 | 59727574 | 59727497 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59727290 | 59727385 | 59727290 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59727078 | 59727177 | 59727078 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59726896 | 59726999 | 59726896 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59726592 | 59726697 | 59726592 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59726396 | 59726474 | 59726396 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | CDS | 59726198 | 59726306 | 59726198 | ID=Msa0129660-mRNA-1:cds;Parent=Msa0129660-mRNA-1 |
| chr1_3 | three_prime_UTR | 59725768 | 59726197 | 59725768 | ID=Msa0129660-mRNA-1:three_prime_utr;Parent=Msa0129660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
