Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129750 | XP_003591658.1 | 87.127 | 536 | 30 | 6 | 43 | 578 | 47 | 543 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129750 | sp|Q9FKG3|PFKA4_ARATH | 64.572 | 573 | 156 | 8 | 10 | 578 | 1 | 530 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129750 | G7I304 | 87.127 | 536 | 30 | 6 | 43 | 578 | 47 | 543 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083310 | Msa0129750 | 0.806709 | 7.212185e-50 | -8.615850e-47 |
| Msa0129750 | Msa0260030 | 0.940711 | 1.461227e-100 | -8.615850e-47 |
| Msa0129750 | Msa0279700 | 0.805570 | 1.252741e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129750 | MtrunA17_Chr1g0196891 | 87.127 | 536 | 30 | 6 | 43 | 578 | 47 | 543 | 0.0 | 922 |
| Msa0129750 | MtrunA17_Chr3g0140611 | 64.570 | 477 | 131 | 4 | 79 | 555 | 16 | 454 | 0.0 | 632 |
| Msa0129750 | MtrunA17_Chr8g0389631 | 62.343 | 478 | 141 | 5 | 81 | 557 | 17 | 456 | 0.0 | 599 |
| Msa0129750 | MtrunA17_Chr6g0487421 | 59.759 | 497 | 153 | 6 | 81 | 574 | 14 | 466 | 0.0 | 597 |
| Msa0129750 | MtrunA17_Chr2g0330871 | 59.836 | 488 | 155 | 6 | 82 | 568 | 18 | 465 | 0.0 | 573 |
| Msa0129750 | MtrunA17_Chr4g0076591 | 51.233 | 365 | 162 | 4 | 196 | 557 | 89 | 440 | 1.10e-126 | 379 |
| Msa0129750 | MtrunA17_Chr8g0367681 | 40.734 | 572 | 267 | 13 | 11 | 555 | 3 | 529 | 2.89e-123 | 373 |
| Msa0129750 | MtrunA17_Chr5g0412481 | 49.872 | 391 | 175 | 6 | 167 | 555 | 162 | 533 | 6.00e-120 | 365 |
| Msa0129750 | MtrunA17_Chr4g0030501 | 62.963 | 54 | 20 | 0 | 457 | 510 | 8 | 61 | 3.70e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129750 | AT5G61580.1 | 64.572 | 573 | 156 | 8 | 10 | 578 | 1 | 530 | 0.0 | 711 |
| Msa0129750 | AT5G61580.2 | 64.572 | 573 | 155 | 9 | 10 | 578 | 1 | 529 | 0.0 | 707 |
| Msa0129750 | AT4G32840.1 | 63.389 | 478 | 128 | 6 | 81 | 555 | 18 | 451 | 0.0 | 608 |
| Msa0129750 | AT4G26270.1 | 61.122 | 499 | 144 | 7 | 81 | 571 | 17 | 473 | 0.0 | 604 |
| Msa0129750 | AT5G56630.1 | 60.750 | 507 | 156 | 8 | 66 | 570 | 1 | 466 | 0.0 | 598 |
| Msa0129750 | AT4G29220.1 | 59.312 | 494 | 160 | 6 | 81 | 573 | 18 | 471 | 0.0 | 590 |
| Msa0129750 | AT5G47810.1 | 49.545 | 440 | 202 | 4 | 119 | 557 | 21 | 441 | 3.38e-148 | 434 |
| Msa0129750 | AT2G22480.1 | 50.636 | 393 | 173 | 6 | 165 | 555 | 164 | 537 | 9.32e-126 | 380 |
| Msa0129750 | AT1G20950.1 | 24.026 | 308 | 207 | 9 | 164 | 454 | 67 | 364 | 1.58e-11 | 67.8 |
Find 149 sgRNAs with CRISPR-Local
Find 444 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCATACCTTGATCTTAT+TGG | 0.159309 | 1_3:+59819740 | None:intergenic |
| CTCCACATGTGCAGCGTTAA+TGG | 0.178071 | 1_3:+59820518 | None:intergenic |
| GAAAACCGTCGTCGTCATTT+TGG | 0.181442 | 1_3:+59824824 | None:intergenic |
| GCATATTAGGTATACATTAT+TGG | 0.252898 | 1_3:-59822166 | Msa0129750:intron |
| CCTCTTCCTTCCAAATAAAA+TGG | 0.258115 | 1_3:+59819927 | None:intergenic |
| TTCATATTTACCGCCATCTT+TGG | 0.261065 | 1_3:+59819151 | None:intergenic |
| TGAGAATAACCATATGTTAA+AGG | 0.269519 | 1_3:+59824448 | None:intergenic |
| GGAGCTATGGCAGGATATTC+TGG | 0.271894 | 1_3:-59818613 | Msa0129750:CDS |
| GTGCAGCGTTAATGGCTCTT+TGG | 0.272360 | 1_3:+59820526 | None:intergenic |
| CAATTAAAATTCACCTCATA+TGG | 0.277715 | 1_3:+59824415 | None:intergenic |
| ATTTATGTACGAGCATAATT+TGG | 0.278435 | 1_3:-59817613 | Msa0129750:three_prime_UTR |
| ACTTGCCAAAGTTGCATTCA+TGG | 0.279787 | 1_3:+59820264 | None:intergenic |
| TGGATATCGCTAACCACTTT+AGG | 0.280368 | 1_3:+59822358 | None:intergenic |
| CTTGCTCATAGTGCTGTTCA+TGG | 0.284319 | 1_3:-59818634 | Msa0129750:CDS |
| GAACAGAGGTTAAAAGAAAA+TGG | 0.297059 | 1_3:-59819885 | Msa0129750:CDS |
| CGTCTTCAAGTGGCTGTGGC+TGG | 0.305034 | 1_3:-59821996 | Msa0129750:CDS |
| TAGGTAATAGATAAATCTTT+TGG | 0.309642 | 1_3:-59820573 | Msa0129750:CDS |
| TGCAGCGTTAATGGCTCTTT+GGG | 0.312466 | 1_3:+59820527 | None:intergenic |
| AATTGGAATTGTTAAGCTAA+TGG | 0.323932 | 1_3:-59820475 | Msa0129750:CDS |
| GGAGGTGATGGTACCCAAAA+AGG | 0.324923 | 1_3:-59822145 | Msa0129750:CDS |
| CTAATCACTGTATTAATTCC+TGG | 0.330168 | 1_3:+59823560 | None:intergenic |
| AATGAACCACTTACAGCTAT+TGG | 0.336729 | 1_3:+59818550 | None:intergenic |
| ATTGGAATTGTTAAGCTAAT+GGG | 0.336799 | 1_3:-59820474 | Msa0129750:CDS |
| CAGGTGTTTGTAAAGGTAAA+TGG | 0.338293 | 1_3:-59825067 | Msa0129750:exon |
| TCTCCTTCTCAACTCTTTGT+TGG | 0.341144 | 1_3:+59817765 | None:intergenic |
| AGGAATTAATACAGTGATTA+GGG | 0.346264 | 1_3:-59823558 | Msa0129750:CDS |
| CAGGAATTAATACAGTGATT+AGG | 0.347485 | 1_3:-59823559 | Msa0129750:CDS |
| AATAGTGTTGAAAATGGAAT+TGG | 0.353614 | 1_3:-59820492 | Msa0129750:CDS |
| ATGCAAGCACGTACTTCTTC+TGG | 0.359195 | 1_3:+59823605 | None:intergenic |
| GTGATTAGGGAAATTGTATC+TGG | 0.361111 | 1_3:-59823545 | Msa0129750:CDS |
| CATTGCCATGAATGCAACTT+TGG | 0.362474 | 1_3:-59820269 | Msa0129750:CDS |
| CAGTATTGTCCTTTAACATA+TGG | 0.363540 | 1_3:-59824457 | Msa0129750:CDS |
| CCCGTCAGTTGGACTGTATT+CGG | 0.366088 | 1_3:+59817845 | None:intergenic |
| TGACTGGTTTGCAGTGGGTT+TGG | 0.372043 | 1_3:+59824099 | None:intergenic |
| GATATTCTGGCTTCACAGTT+GGG | 0.387387 | 1_3:-59818600 | Msa0129750:CDS |
| CGGCAGATTGGGAAGGAAAT+TGG | 0.387979 | 1_3:+59824777 | None:intergenic |
| GGATATTCTGGCTTCACAGT+TGG | 0.392595 | 1_3:-59818601 | Msa0129750:CDS |
| GTGGTGGTAGTGGCGAGTTC+CGG | 0.405658 | 1_3:+59824902 | None:intergenic |
| GTCTTCAAGTGGCTGTGGCT+GGG | 0.407085 | 1_3:-59821995 | Msa0129750:CDS |
| TTTCACAAAGTTTCCAAAGA+TGG | 0.407975 | 1_3:-59819164 | Msa0129750:CDS |
| CTCACCGTGCACTCTTTCTC+CGG | 0.412189 | 1_3:-59824921 | Msa0129750:CDS |
| TCAATTTGCTCCTCCATATG+AGG | 0.413018 | 1_3:-59824428 | Msa0129750:intron |
| TGAAGATATACTTGGGATTG+AGG | 0.413079 | 1_3:-59823501 | Msa0129750:intron |
| CGGGAAAATGGTGGTGGTAG+TGG | 0.430609 | 1_3:+59824892 | None:intergenic |
| ATATTACCTCTATCTAATCT+AGG | 0.434356 | 1_3:-59817718 | Msa0129750:exon |
| GAGGTTAATAGTGTTGAAAA+TGG | 0.434753 | 1_3:-59820498 | Msa0129750:CDS |
| ATGAACCACTTACAGCTATT+GGG | 0.440181 | 1_3:+59818551 | None:intergenic |
| CACAAACAAGGGAGAAGATT+GGG | 0.442961 | 1_3:+59823850 | None:intergenic |
| CTTTACAAGCTTCCATCTGC+AGG | 0.446730 | 1_3:-59820295 | Msa0129750:CDS |
| GGTAGCAGAAGGAGCTGGTC+AGG | 0.447642 | 1_3:-59819847 | Msa0129750:CDS |
| GACAATTGAATAAGCTTGAC+TGG | 0.449931 | 1_3:+59824083 | None:intergenic |
| AGTGGAGACGGAGGAGGAGG+AGG | 0.450045 | 1_3:+59825035 | None:intergenic |
| CGAAGTGGAGACGGAGGAGG+AGG | 0.450110 | 1_3:+59825032 | None:intergenic |
| ATGTTGTCTGAGGCATTACT+TGG | 0.453725 | 1_3:+59818670 | None:intergenic |
| GCGGTAAATATGAAATATAT+AGG | 0.476109 | 1_3:-59819142 | Msa0129750:intron |
| AAATGGACATTTAGTTATTG+TGG | 0.476330 | 1_3:-59819868 | Msa0129750:CDS |
| ATATCATTATCAATTGTCTT+CGG | 0.483135 | 1_3:+59821969 | None:intergenic |
| AATGTTATCTACTATCTTGT+GGG | 0.483176 | 1_3:+59822288 | None:intergenic |
| GGTTTGCAGTGGGTTTGGAT+AGG | 0.485729 | 1_3:+59824104 | None:intergenic |
| TCCAACTGACGGGTAGGATG+TGG | 0.486857 | 1_3:-59817835 | Msa0129750:CDS |
| TCACAAACAAGGGAGAAGAT+TGG | 0.492055 | 1_3:+59823849 | None:intergenic |
| CAATGTTATCTACTATCTTG+TGG | 0.493256 | 1_3:+59822287 | None:intergenic |
| TATGGGGTTGAAGATATACT+TGG | 0.494374 | 1_3:-59823509 | Msa0129750:CDS |
| GCTGACGAGAAGGATGCATC+AGG | 0.494441 | 1_3:-59819798 | Msa0129750:CDS |
| GTTAGCGATATCCATAAACT+TGG | 0.494648 | 1_3:-59822349 | Msa0129750:CDS |
| TAATCACTGTATTAATTCCT+GGG | 0.495015 | 1_3:+59823561 | None:intergenic |
| ATTGAGTCAGGTGTTTGTAA+AGG | 0.498026 | 1_3:-59825074 | Msa0129750:five_prime_UTR |
| TGGTCAGAGGTAACAAAACT+TGG | 0.499296 | 1_3:+59817785 | None:intergenic |
| CCGTGCTGGACCTCGAGAAA+AGG | 0.504764 | 1_3:-59823710 | Msa0129750:intron |
| TAAGCATGTTTGCTGTTCAC+AGG | 0.504896 | 1_3:+59818577 | None:intergenic |
| GAACGAAGTGGAGACGGAGG+AGG | 0.508881 | 1_3:+59825029 | None:intergenic |
| AGAAGAGAACGAAGTGGAGA+CGG | 0.509387 | 1_3:+59825023 | None:intergenic |
| CTCAACTCTTTGTTGGTCAG+AGG | 0.511192 | 1_3:+59817772 | None:intergenic |
| CGGGAGGAGAGAGAAAATGA+AGG | 0.516514 | 1_3:+59824985 | None:intergenic |
| AGGAGCTGCACGCATTTATG+AGG | 0.518699 | 1_3:-59822125 | Msa0129750:intron |
| CGGCGAAAATGAACTCCTCT+AGG | 0.518806 | 1_3:+59823730 | None:intergenic |
| AACTCGAGGAGGTGCGAGTG+GGG | 0.521332 | 1_3:+59824858 | None:intergenic |
| TTAGTTATTGTGGTAGCAGA+AGG | 0.524937 | 1_3:-59819858 | Msa0129750:CDS |
| ATTGTTATTCAGAGTCGGAC+TGG | 0.526925 | 1_3:+59825115 | None:intergenic |
| TGAGGACAGAGGAATAAATC+AGG | 0.526961 | 1_3:-59822266 | Msa0129750:intron |
| TACTTCTTGATGTTGGTCCA+TGG | 0.528721 | 1_3:-59819767 | Msa0129750:CDS |
| TAGTGCTGTTCATGGAGCTA+TGG | 0.529500 | 1_3:-59818626 | Msa0129750:CDS |
| AACAAGCTACTTCTTGATGT+TGG | 0.530093 | 1_3:-59819774 | Msa0129750:CDS |
| AGAGAGAGAAGAGAACGAAG+TGG | 0.530350 | 1_3:+59825017 | None:intergenic |
| GCTGTTCATGGAGCTATGGC+AGG | 0.532078 | 1_3:-59818622 | Msa0129750:CDS |
| GTATACATTATTGGAGGTGA+TGG | 0.532282 | 1_3:-59822157 | Msa0129750:CDS |
| GTTTGTGCGACCATATCTTC+CGG | 0.533344 | 1_3:+59823882 | None:intergenic |
| AGTGAGAGATTGATTGAGTC+AGG | 0.535016 | 1_3:-59825086 | Msa0129750:five_prime_UTR |
| CATGAGATTGACACCTAAAG+TGG | 0.535638 | 1_3:-59822371 | Msa0129750:CDS |
| ACGTCGTCTTCAAGTGGCTG+TGG | 0.536283 | 1_3:-59822000 | Msa0129750:CDS |
| ATAGCTCGAATCATATATGT+AGG | 0.538257 | 1_3:+59818694 | None:intergenic |
| ATGGTTATCCAATAAGATCA+AGG | 0.539762 | 1_3:-59819748 | Msa0129750:intron |
| CAATTTCCTTCCCAATCTGC+CGG | 0.541452 | 1_3:-59824776 | Msa0129750:intron |
| AAACTCGAGGAGGTGCGAGT+GGG | 0.543071 | 1_3:+59824857 | None:intergenic |
| ACATTTCTTCGTACATCTCG+TGG | 0.546699 | 1_3:-59822322 | Msa0129750:CDS |
| GAAAGAGTGCACGGTGAGGA+AGG | 0.551623 | 1_3:+59824926 | None:intergenic |
| AGCCATTAACGCTGCACATG+TGG | 0.551810 | 1_3:-59820520 | Msa0129750:CDS |
| CACTTTAGGTGTCAATCTCA+TGG | 0.552110 | 1_3:+59822372 | None:intergenic |
| ATTGAACCTAGATTAGATAG+AGG | 0.553086 | 1_3:+59817712 | None:intergenic |
| TTAGCGATATCCATAAACTT+GGG | 0.561353 | 1_3:-59822348 | Msa0129750:CDS |
| GAGTGCACGGTGAGGAAGGT+GGG | 0.562678 | 1_3:+59824930 | None:intergenic |
| GAAACTCGAGGAGGTGCGAG+TGG | 0.563173 | 1_3:+59824856 | None:intergenic |
| GGAAGGAAATTGGTGAGGTG+TGG | 0.563392 | 1_3:+59824787 | None:intergenic |
| CACAAAGTTTCCAAAGATGG+CGG | 0.564759 | 1_3:-59819161 | Msa0129750:CDS |
| AAGCTTGACTGGTTTGCAGT+GGG | 0.565605 | 1_3:+59824094 | None:intergenic |
| TGACCAACAAAGAGTTGAGA+AGG | 0.572227 | 1_3:-59817768 | Msa0129750:CDS |
| CCGAATACAGTCCAACTGAC+GGG | 0.573522 | 1_3:-59817845 | Msa0129750:CDS |
| CAGAGATTGTTATTCAGAGT+CGG | 0.575192 | 1_3:+59825110 | None:intergenic |
| ACTCGAGGAGGTGCGAGTGG+GGG | 0.579515 | 1_3:+59824859 | None:intergenic |
| TGAGGTGTGGAACGTCTTCG+AGG | 0.579819 | 1_3:+59824800 | None:intergenic |
| CCCACATCCTACCCGTCAGT+TGG | 0.582635 | 1_3:+59817834 | None:intergenic |
| TTGATCTTATTGGATAACCA+TGG | 0.584300 | 1_3:+59819750 | None:intergenic |
| TAGCGATATCCATAAACTTG+GGG | 0.585309 | 1_3:-59822347 | Msa0129750:CDS |
| GAGGAGAGAGAAAATGAAGG+AGG | 0.587786 | 1_3:+59824988 | None:intergenic |
| ACCGAATACAGTCCAACTGA+CGG | 0.592795 | 1_3:-59817846 | Msa0129750:CDS |
| TGGGTTTGATTGGAAACTCG+AGG | 0.592975 | 1_3:+59824844 | None:intergenic |
| ATGGGGTTGAAGATATACTT+GGG | 0.595435 | 1_3:-59823508 | Msa0129750:CDS |
| TATTAGGTATACATTATTGG+AGG | 0.596182 | 1_3:-59822163 | Msa0129750:intron |
| AGAGAACGAAGTGGAGACGG+AGG | 0.597070 | 1_3:+59825026 | None:intergenic |
| CAATTTAATAATACATACAG+AGG | 0.600966 | 1_3:-59817557 | Msa0129750:three_prime_UTR |
| ACTTGTGGAGGATTATGCCC+AGG | 0.602827 | 1_3:-59823578 | Msa0129750:CDS |
| ATGGCAATGAAACCTGCAGA+TGG | 0.605814 | 1_3:+59820283 | None:intergenic |
| AGTTCATACAGCTGACGAGA+AGG | 0.612570 | 1_3:-59819808 | Msa0129750:CDS |
| TTAAAATTCACCTCATATGG+AGG | 0.614788 | 1_3:+59824418 | None:intergenic |
| AGAGTGCACGGTGAGGAAGG+TGG | 0.617982 | 1_3:+59824929 | None:intergenic |
| AACTTTGGCAAGTCGAGATG+TGG | 0.618228 | 1_3:-59820254 | Msa0129750:intron |
| CATTAACGCTGCACATGTGG+AGG | 0.626820 | 1_3:-59820517 | Msa0129750:CDS |
| ACGGTACCGGCAGATTGGGA+AGG | 0.627837 | 1_3:+59824770 | None:intergenic |
| ATTGTGGTAGCAGAAGGAGC+TGG | 0.628479 | 1_3:-59819852 | Msa0129750:CDS |
| ATACAGTCCAACTGACGGGT+AGG | 0.630876 | 1_3:-59817841 | Msa0129750:CDS |
| TAAGCTTGACTGGTTTGCAG+TGG | 0.634563 | 1_3:+59824093 | None:intergenic |
| CCAACTGACGGGTAGGATGT+GGG | 0.634997 | 1_3:-59817834 | Msa0129750:CDS |
| CGTGCTTGCATAGTGACTTG+TGG | 0.639705 | 1_3:-59823593 | Msa0129750:CDS |
| ACAAAGAGTTGAGAAGGAGA+TGG | 0.647600 | 1_3:-59817762 | Msa0129750:CDS |
| ATGGTCGCACAAACTGTGAG+TGG | 0.652318 | 1_3:-59823873 | Msa0129750:CDS |
| AAGCTAATGGGAAGATACAG+TGG | 0.661965 | 1_3:-59820462 | Msa0129750:CDS |
| CAAGATAGTAGATAACATTG+AGG | 0.662500 | 1_3:-59822284 | Msa0129750:CDS |
| CGTGCAGTAAATGTTGTCTG+AGG | 0.668303 | 1_3:+59818660 | None:intergenic |
| CTGACGAGAAGGATGCATCA+GGG | 0.670588 | 1_3:-59819797 | Msa0129750:CDS |
| GATTGGGAAGGAAATTGGTG+AGG | 0.672016 | 1_3:+59824782 | None:intergenic |
| AGTTCCGGAGAAAGAGTGCA+CGG | 0.678088 | 1_3:+59824917 | None:intergenic |
| CGGAGAAAGAGTGCACGGTG+AGG | 0.697677 | 1_3:+59824922 | None:intergenic |
| GTAGATAACATTGAGGACAG+AGG | 0.702200 | 1_3:-59822277 | Msa0129750:CDS |
| GCTTGCATAGTGACTTGTGG+AGG | 0.703893 | 1_3:-59823590 | Msa0129750:CDS |
| TTTCTTCGTACATCTCGTGG+AGG | 0.711175 | 1_3:-59822319 | Msa0129750:CDS |
| CAAACCCAAAATGACGACGA+CGG | 0.728120 | 1_3:-59824829 | Msa0129750:CDS |
| AATAAAACAAGAATAACACA+AGG | 0.738822 | 1_3:+59817670 | None:intergenic |
| GTTTGATTGGAAACTCGAGG+AGG | 0.745666 | 1_3:+59824847 | None:intergenic |
| AGCGATATCCATAAACTTGG+GGG | 0.758992 | 1_3:-59822346 | Msa0129750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAGAAACAAAAAATT+GGG | + | chr1_3:59818699-59818718 | None:intergenic | 10.0% |
| !! | AATTTAAAGAAACAAAAAAT+TGG | + | chr1_3:59818700-59818719 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAAATTGAA+TGG | + | chr1_3:59819272-59819291 | None:intergenic | 10.0% |
| !! | AAAAATATAAAAGATAAAAG+AGG | - | chr1_3:59819450-59819469 | Msa0129750:intron | 10.0% |
| !!! | AACAATAAAGATTAAAATTT+TGG | + | chr1_3:59821652-59821671 | None:intergenic | 10.0% |
| !! | TATTTGGATATATTTATTAT+TGG | + | chr1_3:59821799-59821818 | None:intergenic | 10.0% |
| !! | TCAATGAAAAAATATATATT+TGG | + | chr1_3:59822285-59822304 | None:intergenic | 10.0% |
| !!! | ATATATATTTTTTCATTGAA+AGG | - | chr1_3:59822286-59822305 | Msa0129750:CDS | 10.0% |
| !!! | TGTATTTAATTGATTTAATT+CGG | - | chr1_3:59822601-59822620 | Msa0129750:intron | 10.0% |
| !! | ATTTGTATATTAAGAAAAAA+TGG | + | chr1_3:59823453-59823472 | None:intergenic | 10.0% |
| !!! | ATTGTTTTTTTTTGTAATTA+AGG | - | chr1_3:59824647-59824666 | Msa0129750:intron | 10.0% |
| !!! | TTTTATTTTATTTTTCTGTT+TGG | - | chr1_3:59825006-59825025 | Msa0129750:CDS | 10.0% |
| !! | TTAATTCTTCAATTAACAAA+AGG | + | chr1_3:59819245-59819264 | None:intergenic | 15.0% |
| !! | TGTTTAAATTACTAATAGTT+CGG | - | chr1_3:59819310-59819329 | Msa0129750:intron | 15.0% |
| !!! | ATACAATATACACAATATTT+TGG | + | chr1_3:59820133-59820152 | None:intergenic | 15.0% |
| !! | AAAATATTGTGTATATTGTA+TGG | - | chr1_3:59820132-59820151 | Msa0129750:intron | 15.0% |
| !! | AAATGACAATAAAAGAAATT+GGG | + | chr1_3:59820193-59820212 | None:intergenic | 15.0% |
| !!! | TCCATTATATAGTTTTATTA+TGG | - | chr1_3:59820595-59820614 | Msa0129750:intron | 15.0% |
| !! | TCCATAATAAAACTATATAA+TGG | + | chr1_3:59820599-59820618 | None:intergenic | 15.0% |
| !!! | AACAATACTAACAATTTTTT+AGG | - | chr1_3:59820966-59820985 | Msa0129750:intron | 15.0% |
| !!! | TTTGAATCTTTTCTTATTTT+TGG | - | chr1_3:59820999-59821018 | Msa0129750:intron | 15.0% |
| !! | AATATGCAAAAAATTAATGT+AGG | - | chr1_3:59821377-59821396 | Msa0129750:intron | 15.0% |
| !!! | GAATTTTTCTTGTTTTTTTA+AGG | - | chr1_3:59823057-59823076 | Msa0129750:intron | 15.0% |
| !! | ATAACAAAATGAATTTAACA+AGG | + | chr1_3:59823091-59823110 | None:intergenic | 15.0% |
| !!! | TTTTTAATCATAAAACTTGT+GGG | - | chr1_3:59823125-59823144 | Msa0129750:intron | 15.0% |
| !! | TAACATGTTAAATTAACTAT+AGG | + | chr1_3:59823670-59823689 | None:intergenic | 15.0% |
| !!! | CTAAATAAAATATTTTCTCT+TGG | - | chr1_3:59824268-59824287 | Msa0129750:intron | 15.0% |
| !! | AAAACAAGAAAAATATAATG+AGG | + | chr1_3:59824731-59824750 | None:intergenic | 15.0% |
| !!! | TCATTATATTTTTCTTGTTT+TGG | - | chr1_3:59824730-59824749 | Msa0129750:intron | 15.0% |
| !! | ATAGAAAAATAGTGTTAGAA+AGG | + | chr1_3:59817923-59817942 | None:intergenic | 20.0% |
| !!! | GTTGGTACTATTAATTTTAA+TGG | - | chr1_3:59817999-59818018 | Msa0129750:intron | 20.0% |
| !! | TTCTTATTAATAATAGCTAG+TGG | - | chr1_3:59818036-59818055 | Msa0129750:intron | 20.0% |
| !! | AGTATTAAAAGAGACAAATA+AGG | - | chr1_3:59818094-59818113 | Msa0129750:intron | 20.0% |
| !!! | AGGTGAATTTTAATTGTAAA+AGG | - | chr1_3:59818252-59818271 | Msa0129750:intron | 20.0% |
| !! | TAATTGTAAAAGGATTAAGT+TGG | - | chr1_3:59818262-59818281 | Msa0129750:intron | 20.0% |
| !! | AGAAAATAATTCACAAACAA+GGG | + | chr1_3:59818824-59818843 | None:intergenic | 20.0% |
| !! | AAGAAAATAATTCACAAACA+AGG | + | chr1_3:59818825-59818844 | None:intergenic | 20.0% |
| !! | AATATATGTAAGATCAAAGA+GGG | + | chr1_3:59818867-59818886 | None:intergenic | 20.0% |
| !! | AAATATATGTAAGATCAAAG+AGG | + | chr1_3:59818868-59818887 | None:intergenic | 20.0% |
| !! | TAAGAAAATAACCAAGAAAA+TGG | - | chr1_3:59819500-59819519 | Msa0129750:intron | 20.0% |
| !! | AAGAAAATAACCAAGAAAAT+GGG | - | chr1_3:59819501-59819520 | Msa0129750:intron | 20.0% |
| !! | TTCTTATAACTTATAAGACT+TGG | + | chr1_3:59819655-59819674 | None:intergenic | 20.0% |
| !!! | ATAAGTTATAAGAACTGTTT+TGG | - | chr1_3:59819661-59819680 | Msa0129750:intron | 20.0% |
| !!! | TCTAATAGCATTTTCAAATT+TGG | - | chr1_3:59819800-59819819 | Msa0129750:CDS | 20.0% |
| !!! | ATTTTCAAATTTGGATTTTG+AGG | - | chr1_3:59819809-59819828 | Msa0129750:CDS | 20.0% |
| !!! | TGTTTTATCTCTAATCAATA+CGG | - | chr1_3:59819894-59819913 | Msa0129750:CDS | 20.0% |
| !! | GAAATGACAATAAAAGAAAT+TGG | + | chr1_3:59820194-59820213 | None:intergenic | 20.0% |
| !!! | AAATTTGATTTGTGCATATT+AGG | - | chr1_3:59820481-59820500 | Msa0129750:CDS | 20.0% |
| !! | ATATCATTATCAATTGTCTT+CGG | + | chr1_3:59820694-59820713 | None:intergenic | 20.0% |
| !! | CATCATGTTAAATATCAAAA+TGG | + | chr1_3:59821306-59821325 | None:intergenic | 20.0% |
| !!! | TTGTAATTGATAGTGAAAAT+AGG | - | chr1_3:59821541-59821560 | Msa0129750:intron | 20.0% |
| !!! | ATTTTTATTTCACAACATAC+AGG | - | chr1_3:59821607-59821626 | Msa0129750:intron | 20.0% |
| !! | TGGATATATTTATTATTGGA+GGG | + | chr1_3:59821795-59821814 | None:intergenic | 20.0% |
| !! | TTGGATATATTTATTATTGG+AGG | + | chr1_3:59821796-59821815 | None:intergenic | 20.0% |
| !! | AAAAAATGACATTAAAGAAC+TGG | - | chr1_3:59821862-59821881 | Msa0129750:intron | 20.0% |
| !! | AAAAATGACATTAAAGAACT+GGG | - | chr1_3:59821863-59821882 | Msa0129750:intron | 20.0% |
| !! | AAATAATATATGCACCAAAA+TGG | + | chr1_3:59821915-59821934 | None:intergenic | 20.0% |
| !!! | TAGGTAATAGATAAATCTTT+TGG | - | chr1_3:59822087-59822106 | Msa0129750:intron | 20.0% |
| !!! | ATTTTTCTGAAAAGAGAAAT+AGG | + | chr1_3:59822344-59822363 | None:intergenic | 20.0% |
| !!! | CTTTTTAATCATAAAACTTG+TGG | - | chr1_3:59823124-59823143 | Msa0129750:intron | 20.0% |
| !! | TGATTACTTAAACATAATCT+AGG | - | chr1_3:59823843-59823862 | Msa0129750:intron | 20.0% |
| !! | ATAATTTGAATGAAGTAAAG+AGG | + | chr1_3:59824211-59824230 | None:intergenic | 20.0% |
| !! | TTATTTAGAAAATCTAGATG+AGG | + | chr1_3:59824256-59824275 | None:intergenic | 20.0% |
| !! | AATAAAACAAGAATAACACA+AGG | + | chr1_3:59824993-59825012 | None:intergenic | 20.0% |
| !! | CAATTTAATAATACATACAG+AGG | - | chr1_3:59825103-59825122 | Msa0129750:five_prime_UTR | 20.0% |
| ! | AGTTAATTGAATCTATGTGT+TGG | - | chr1_3:59817981-59818000 | Msa0129750:intron | 25.0% |
| ! | TTAAAAGAGACAAATAAGGA+AGG | - | chr1_3:59818098-59818117 | Msa0129750:intron | 25.0% |
| ! | TGAGAATAACCATATGTTAA+AGG | + | chr1_3:59818215-59818234 | None:intergenic | 25.0% |
| ! | CAATTAAAATTCACCTCATA+TGG | + | chr1_3:59818248-59818267 | None:intergenic | 25.0% |
| ! | TTGCATAAGTTAACAAGTAA+TGG | - | chr1_3:59818310-59818329 | Msa0129750:intron | 25.0% |
| !!! | TGTTTTGGTTGATTTGTTAA+GGG | - | chr1_3:59818370-59818389 | Msa0129750:intron | 25.0% |
| ! | GATATATACATACATACATG+AGG | + | chr1_3:59818472-59818491 | None:intergenic | 25.0% |
| ! | AGTTAATAAGCTTCAAATCT+AGG | + | chr1_3:59818655-59818674 | None:intergenic | 25.0% |
| ! | TAATCACTGTATTAATTCCT+GGG | + | chr1_3:59819102-59819121 | None:intergenic | 25.0% |
| ! | AGGAATTAATACAGTGATTA+GGG | - | chr1_3:59819102-59819121 | Msa0129750:intron | 25.0% |
| !!! | GTTAACTAGTTTTACAATCT+GGG | - | chr1_3:59819582-59819601 | Msa0129750:intron | 25.0% |
| ! | AAAACAAAATAGTCCTTACA+AGG | + | chr1_3:59819880-59819899 | None:intergenic | 25.0% |
| !! | GTTTTATCTCTAATCAATAC+GGG | - | chr1_3:59819895-59819914 | Msa0129750:CDS | 25.0% |
| !! | TTTTATCTCTAATCAATACG+GGG | - | chr1_3:59819896-59819915 | Msa0129750:CDS | 25.0% |
| ! | TTAAGAGTTATCAAGTTAGA+TGG | + | chr1_3:59820086-59820105 | None:intergenic | 25.0% |
| ! | AATGTTATCTACTATCTTGT+GGG | + | chr1_3:59820375-59820394 | None:intergenic | 25.0% |
| !!! | TCAGTAAATTTTGTCGTTTT+AGG | - | chr1_3:59820429-59820448 | Msa0129750:intron | 25.0% |
| ! | TTTAGGTGCTTAATAGATTA+TGG | - | chr1_3:59820446-59820465 | Msa0129750:CDS | 25.0% |
| ! | AATAGATTATGGAAAACCAA+TGG | - | chr1_3:59820457-59820476 | Msa0129750:CDS | 25.0% |
| ! | ATAGATTATGGAAAACCAAT+GGG | - | chr1_3:59820458-59820477 | Msa0129750:CDS | 25.0% |
| ! | GCATATTAGGTATACATTAT+TGG | - | chr1_3:59820494-59820513 | Msa0129750:CDS | 25.0% |
| ! | TATTAGGTATACATTATTGG+AGG | - | chr1_3:59820497-59820516 | Msa0129750:CDS | 25.0% |
| ! | TTGATTTCTCTCACAATTTA+TGG | - | chr1_3:59820561-59820580 | Msa0129750:CDS | 25.0% |
| !! | CACAAGTTTAAAACAGATAA+CGG | + | chr1_3:59820734-59820753 | None:intergenic | 25.0% |
| ! | AAAACAGGATAATGATACAA+TGG | + | chr1_3:59820812-59820831 | None:intergenic | 25.0% |
| !!! | TATCCTGTTTTTATTCTTTG+TGG | - | chr1_3:59820821-59820840 | Msa0129750:intron | 25.0% |
| !!! | ATCCTGTTTTTATTCTTTGT+GGG | - | chr1_3:59820822-59820841 | Msa0129750:intron | 25.0% |
| ! | ATGTTCATGACAAACAAATT+CGG | - | chr1_3:59820853-59820872 | Msa0129750:intron | 25.0% |
| !! | GATAATGTATCTGATGATTT+TGG | - | chr1_3:59820899-59820918 | Msa0129750:intron | 25.0% |
| ! | TATTGTTGTCTAAGAAAATG+AGG | + | chr1_3:59820953-59820972 | None:intergenic | 25.0% |
| ! | AATGTAGGCTATTACTAAAA+AGG | - | chr1_3:59821392-59821411 | Msa0129750:intron | 25.0% |
| ! | ATGTAGGCTATTACTAAAAA+GGG | - | chr1_3:59821393-59821412 | Msa0129750:intron | 25.0% |
| ! | TGATTTGAAAACAAGAAGTA+AGG | - | chr1_3:59821498-59821517 | Msa0129750:intron | 25.0% |
| !! | GATTGAATTCATGCTTATTT+TGG | - | chr1_3:59821739-59821758 | Msa0129750:intron | 25.0% |
| ! | TATCACAAAAAGTTATTGCT+CGG | + | chr1_3:59822050-59822069 | None:intergenic | 25.0% |
| ! | AAGATTTATCTATTACCTAG+AGG | + | chr1_3:59822086-59822105 | None:intergenic | 25.0% |
| !! | AATAGTGTTGAAAATGGAAT+TGG | - | chr1_3:59822168-59822187 | Msa0129750:intron | 25.0% |
| ! | AATTGGAATTGTTAAGCTAA+TGG | - | chr1_3:59822185-59822204 | Msa0129750:intron | 25.0% |
| ! | ATTGGAATTGTTAAGCTAAT+GGG | - | chr1_3:59822186-59822205 | Msa0129750:intron | 25.0% |
| !! | TCCATAAACTGATTCTTATT+AGG | - | chr1_3:59822438-59822457 | Msa0129750:intron | 25.0% |
| ! | ACCTAATAAGAATCAGTTTA+TGG | + | chr1_3:59822442-59822461 | None:intergenic | 25.0% |
| !!! | ATTAGGTGTTTTGTTATTGA+TGG | - | chr1_3:59822455-59822474 | Msa0129750:intron | 25.0% |
| !!! | TTAGGTGTTTTGTTATTGAT+GGG | - | chr1_3:59822456-59822475 | Msa0129750:intron | 25.0% |
| ! | CTTGAAAAAATCAATAAACG+AGG | + | chr1_3:59822648-59822667 | None:intergenic | 25.0% |
| !!! | GATTTTTTCAAGAGAGAAAA+AGG | - | chr1_3:59822656-59822675 | Msa0129750:intron | 25.0% |
| !!! | TTTTTGAGTTTATTGAACAG+AGG | - | chr1_3:59822761-59822780 | Msa0129750:intron | 25.0% |
| ! | AAATGGACATTTAGTTATTG+TGG | - | chr1_3:59822792-59822811 | Msa0129750:intron | 25.0% |
| ! | ACATTATAGAACTGATCTAT+TGG | + | chr1_3:59823017-59823036 | None:intergenic | 25.0% |
| !! | TTTCATTTTCTTTGATGAGA+AGG | + | chr1_3:59823237-59823256 | None:intergenic | 25.0% |
| ! | AGAAAAAATGGACAACTTAA+AGG | + | chr1_3:59823441-59823460 | None:intergenic | 25.0% |
| ! | GCGGTAAATATGAAATATAT+AGG | - | chr1_3:59823518-59823537 | Msa0129750:CDS | 25.0% |
| ! | AAAGATAAAGCTATTGTAAG+TGG | + | chr1_3:59823606-59823625 | None:intergenic | 25.0% |
| ! | ATTGCATCTAATAGATTAGT+AGG | - | chr1_3:59823712-59823731 | Msa0129750:CDS | 25.0% |
| ! | CAAGCATAAAAAAGTTAACA+TGG | + | chr1_3:59823825-59823844 | None:intergenic | 25.0% |
| !!! | ACAACTTTGTTGTTAATTCT+AGG | + | chr1_3:59824386-59824405 | None:intergenic | 25.0% |
| ! | TAAGCAATTTAATGAATTGC+CGG | - | chr1_3:59824433-59824452 | Msa0129750:CDS | 25.0% |
| ! | ATATTACCTCTATCTAATCT+AGG | - | chr1_3:59824942-59824961 | Msa0129750:CDS | 25.0% |
| ! | ATTTATGTACGAGCATAATT+TGG | - | chr1_3:59825047-59825066 | Msa0129750:CDS | 25.0% |
| GTGTTAGAAAGGAGAAAAAA+CGG | + | chr1_3:59817912-59817931 | None:intergenic | 30.0% | |
| !!! | TGCATTTTCAAGTCATTAAG+AGG | - | chr1_3:59818142-59818161 | Msa0129750:intron | 30.0% |
| AGAGGATGTATATATTACTG+AGG | - | chr1_3:59818160-59818179 | Msa0129750:intron | 30.0% | |
| CAGTATTGTCCTTTAACATA+TGG | - | chr1_3:59818203-59818222 | Msa0129750:intron | 30.0% | |
| TTAAAATTCACCTCATATGG+AGG | + | chr1_3:59818245-59818264 | None:intergenic | 30.0% | |
| ! | GAGTTTTTGACAAACTGTTT+TGG | - | chr1_3:59818355-59818374 | Msa0129750:intron | 30.0% |
| !!! | CTGTTTTGGTTGATTTGTTA+AGG | - | chr1_3:59818369-59818388 | Msa0129750:intron | 30.0% |
| !!! | GTTTTGGTTGATTTGTTAAG+GGG | - | chr1_3:59818371-59818390 | Msa0129750:intron | 30.0% |
| ATTCCTTCTTCTAACCATAT+TGG | - | chr1_3:59818493-59818512 | Msa0129750:intron | 30.0% | |
| ACTATCAGAAATCACCAATA+TGG | + | chr1_3:59818510-59818529 | None:intergenic | 30.0% | |
| AGAAACAAAAAATTGGGAAC+TGG | + | chr1_3:59818693-59818712 | None:intergenic | 30.0% | |
| ! | ATAAACCGTTTTATGCTTTC+AGG | - | chr1_3:59818740-59818759 | Msa0129750:intron | 30.0% |
| ! | GTATTCCTGAAAGCATAAAA+CGG | + | chr1_3:59818748-59818767 | None:intergenic | 30.0% |
| ATTCAGAAAAATAGTCCTAG+AGG | - | chr1_3:59818915-59818934 | Msa0129750:intron | 30.0% | |
| ! | ATGTTTTATACCTTTTCTCG+AGG | + | chr1_3:59818963-59818982 | None:intergenic | 30.0% |
| ! | TCGAGAAAAGGTATAAAACA+TGG | - | chr1_3:59818962-59818981 | Msa0129750:intron | 30.0% |
| GAAGTAAACCTAATATTCGA+AGG | + | chr1_3:59819032-59819051 | None:intergenic | 30.0% | |
| CTAATCACTGTATTAATTCC+TGG | + | chr1_3:59819103-59819122 | None:intergenic | 30.0% | |
| CAGGAATTAATACAGTGATT+AGG | - | chr1_3:59819101-59819120 | Msa0129750:intron | 30.0% | |
| AGTAGTTAATACGTCATTTG+CGG | - | chr1_3:59819382-59819401 | Msa0129750:intron | 30.0% | |
| AAATAACCAAGAAAATGGGA+AGG | - | chr1_3:59819505-59819524 | Msa0129750:intron | 30.0% | |
| CAACCAATTCATAACAGTAA+AGG | - | chr1_3:59819539-59819558 | Msa0129750:intron | 30.0% | |
| CAATTCATAACAGTAAAGGA+GGG | - | chr1_3:59819543-59819562 | Msa0129750:intron | 30.0% | |
| !!! | CGTTAACTAGTTTTACAATC+TGG | - | chr1_3:59819581-59819600 | Msa0129750:intron | 30.0% |
| ATGGGACTAATAATAGATCT+AGG | - | chr1_3:59819772-59819791 | Msa0129750:CDS | 30.0% | |
| TCCTGTCTTGAATATTATGA+CGG | - | chr1_3:59820016-59820035 | Msa0129750:intron | 30.0% | |
| TTATGAATCACCATATTCTC+TGG | - | chr1_3:59820222-59820241 | Msa0129750:intron | 30.0% | |
| TATGAATCACCATATTCTCT+GGG | - | chr1_3:59820223-59820242 | Msa0129750:intron | 30.0% | |
| !!! | CTTTTTCAGGAAGGATATAA+AGG | - | chr1_3:59820248-59820267 | Msa0129750:intron | 30.0% |
| TTAGCGATATCCATAAACTT+GGG | - | chr1_3:59820312-59820331 | Msa0129750:intron | 30.0% | |
| CAATGTTATCTACTATCTTG+TGG | + | chr1_3:59820376-59820395 | None:intergenic | 30.0% | |
| CAAGATAGTAGATAACATTG+AGG | - | chr1_3:59820376-59820395 | Msa0129750:intron | 30.0% | |
| ! | TTTTCAACTTCCTTCATCAA+AGG | + | chr1_3:59820640-59820659 | None:intergenic | 30.0% |
| !!! | TCCTGTTTTTATTCTTTGTG+GGG | - | chr1_3:59820823-59820842 | Msa0129750:intron | 30.0% |
| !!! | TGATGATTTTGGTGTTGTTT+TGG | - | chr1_3:59820910-59820929 | Msa0129750:intron | 30.0% |
| !!! | TTATTTTTGGCTGCAAACTT+TGG | - | chr1_3:59821012-59821031 | Msa0129750:intron | 30.0% |
| !!! | TTGATTATTTTTACCAGACC+AGG | + | chr1_3:59821120-59821139 | None:intergenic | 30.0% |
| TGGTCTGGTAAAAATAATCA+AGG | - | chr1_3:59821119-59821138 | Msa0129750:intron | 30.0% | |
| AATTTCAGCACATTAACAAG+AGG | - | chr1_3:59821692-59821711 | Msa0129750:intron | 30.0% | |
| ! | TATTTTGCATGTTTACCTCT+AGG | - | chr1_3:59822068-59822087 | Msa0129750:intron | 30.0% |
| ! | GAGGTTAATAGTGTTGAAAA+TGG | - | chr1_3:59822162-59822181 | Msa0129750:intron | 30.0% |
| TTCATTGAAAGGACATAGAA+TGG | - | chr1_3:59822297-59822316 | Msa0129750:CDS | 30.0% | |
| TCATTGAAAGGACATAGAAT+GGG | - | chr1_3:59822298-59822317 | Msa0129750:CDS | 30.0% | |
| !! | GTTTGATGAACTGATTCTTT+TGG | - | chr1_3:59822483-59822502 | Msa0129750:intron | 30.0% |
| GAAAAAATCAATAAACGAGG+AGG | + | chr1_3:59822645-59822664 | None:intergenic | 30.0% | |
| ! | TTACAACTGTTGCTATTAGT+AGG | + | chr1_3:59822686-59822705 | None:intergenic | 30.0% |
| GAACAGAGGTTAAAAGAAAA+TGG | - | chr1_3:59822775-59822794 | Msa0129750:intron | 30.0% | |
| TTGATCTTATTGGATAACCA+TGG | + | chr1_3:59822913-59822932 | None:intergenic | 30.0% | |
| ATGGTTATCCAATAAGATCA+AGG | - | chr1_3:59822912-59822931 | Msa0129750:intron | 30.0% | |
| ! | ATTGGTAAGTTGACTGATAA+TGG | + | chr1_3:59822999-59823018 | None:intergenic | 30.0% |
| TTTGAAAACTGTGTAGACTT+TGG | - | chr1_3:59823304-59823323 | Msa0129750:intron | 30.0% | |
| TTTCACAAAGTTTCCAAAGA+TGG | - | chr1_3:59823496-59823515 | Msa0129750:intron | 30.0% | |
| ATAAAGCTATTGTAAGTGGA+AGG | + | chr1_3:59823602-59823621 | None:intergenic | 30.0% | |
| ACGAAAATGTATTATCCAGT+TGG | - | chr1_3:59823637-59823656 | Msa0129750:intron | 30.0% | |
| ACTATAGGTAAATTTCCAAC+TGG | + | chr1_3:59823655-59823674 | None:intergenic | 30.0% | |
| TAACATGTTACTGAATCAGA+TGG | - | chr1_3:59823680-59823699 | Msa0129750:intron | 30.0% | |
| ATAGCTCGAATCATATATGT+AGG | + | chr1_3:59823969-59823988 | None:intergenic | 30.0% | |
| TTAACAACAAAGTTGTGTTG+AGG | - | chr1_3:59824390-59824409 | Msa0129750:intron | 30.0% | |
| TCTCATAAAGCTTATGCATT+TGG | + | chr1_3:59824507-59824526 | None:intergenic | 30.0% | |
| AGCTGGTATAGTAAATGTTA+TGG | + | chr1_3:59824757-59824776 | None:intergenic | 30.0% | |
| ATTGAACCTAGATTAGATAG+AGG | + | chr1_3:59824951-59824970 | None:intergenic | 30.0% | |
| ! | CAGAGATTGTTATTCAGAGT+CGG | + | chr1_3:59817553-59817572 | None:intergenic | 35.0% |
| ATTGAGTCAGGTGTTTGTAA+AGG | - | chr1_3:59817586-59817605 | Msa0129750:three_prime_UTR | 35.0% | |
| CAGGTGTTTGTAAAGGTAAA+TGG | - | chr1_3:59817593-59817612 | Msa0129750:three_prime_UTR | 35.0% | |
| ! | ACTTGTTAACTTATGCAACG+AGG | + | chr1_3:59818308-59818327 | None:intergenic | 35.0% |
| TCTATATTTGTCCTTCGATC+TGG | + | chr1_3:59818337-59818356 | None:intergenic | 35.0% | |
| TCACCAATATGGTTAGAAGA+AGG | + | chr1_3:59818499-59818518 | None:intergenic | 35.0% | |
| CTGCAAAAGAGGAATTCAAA+TGG | + | chr1_3:59818535-59818554 | None:intergenic | 35.0% | |
| GACAATTGAATAAGCTTGAC+TGG | + | chr1_3:59818580-59818599 | None:intergenic | 35.0% | |
| ! | CAGGAATACTTTTGTAAGTC+CGG | - | chr1_3:59818759-59818778 | Msa0129750:intron | 35.0% |
| ! | TTTTGTAAGTCCGGAAGATA+TGG | - | chr1_3:59818768-59818787 | Msa0129750:intron | 35.0% |
| GTGATTAGGGAAATTGTATC+TGG | - | chr1_3:59819115-59819134 | Msa0129750:intron | 35.0% | |
| ! | TCTGGCTTGAAAAACATGTA+TGG | - | chr1_3:59819133-59819152 | Msa0129750:intron | 35.0% |
| ! | CTGGCTTGAAAAACATGTAT+GGG | - | chr1_3:59819134-59819153 | Msa0129750:intron | 35.0% |
| TGGCTTGAAAAACATGTATG+GGG | - | chr1_3:59819135-59819154 | Msa0129750:intron | 35.0% | |
| TATGGGGTTGAAGATATACT+TGG | - | chr1_3:59819151-59819170 | Msa0129750:CDS | 35.0% | |
| ATGGGGTTGAAGATATACTT+GGG | - | chr1_3:59819152-59819171 | Msa0129750:CDS | 35.0% | |
| TGAAGATATACTTGGGATTG+AGG | - | chr1_3:59819159-59819178 | Msa0129750:CDS | 35.0% | |
| ! | TTCAATCCTTCCCATTTTCT+TGG | + | chr1_3:59819514-59819533 | None:intergenic | 35.0% |
| CCTCCTTTACTGTTATGAAT+TGG | + | chr1_3:59819545-59819564 | None:intergenic | 35.0% | |
| CCAATTCATAACAGTAAAGG+AGG | - | chr1_3:59819542-59819561 | Msa0129750:intron | 35.0% | |
| ! | ACTAGTTAACGAGTGTTTTG+TGG | + | chr1_3:59819572-59819591 | None:intergenic | 35.0% |
| GCTATATCTTGACTCAACAT+GGG | - | chr1_3:59819683-59819702 | Msa0129750:intron | 35.0% | |
| TTCAACCTTAAGCCATCTTT+GGG | + | chr1_3:59819846-59819865 | None:intergenic | 35.0% | |
| AAAATAGTCCTTACAAGGCT+TGG | + | chr1_3:59819875-59819894 | None:intergenic | 35.0% | |
| TCCTCAACGTAGAAAACTAT+AGG | - | chr1_3:59819965-59819984 | Msa0129750:intron | 35.0% | |
| ! | ACCTATAGTTTTCTACGTTG+AGG | + | chr1_3:59819969-59819988 | None:intergenic | 35.0% |
| CCTGTCTTGAATATTATGAC+GGG | - | chr1_3:59820017-59820036 | Msa0129750:intron | 35.0% | |
| GAAAAAGTTCCCAGAGAATA+TGG | + | chr1_3:59820235-59820254 | None:intergenic | 35.0% | |
| !! | TATTCTCTGGGAACTTTTTC+AGG | - | chr1_3:59820235-59820254 | Msa0129750:intron | 35.0% |
| GTTAGCGATATCCATAAACT+TGG | - | chr1_3:59820311-59820330 | Msa0129750:intron | 35.0% | |
| TAGCGATATCCATAAACTTG+GGG | - | chr1_3:59820313-59820332 | Msa0129750:intron | 35.0% | |
| GCACAAATCAAATTTCCCAT+TGG | + | chr1_3:59820476-59820495 | None:intergenic | 35.0% | |
| GTATACATTATTGGAGGTGA+TGG | - | chr1_3:59820503-59820522 | Msa0129750:CDS | 35.0% | |
| ATATGAGCATCCTTTGATGA+AGG | - | chr1_3:59820627-59820646 | Msa0129750:intron | 35.0% | |
| !! | GTTTTAAACTTGTGCTCACA+TGG | - | chr1_3:59820740-59820759 | Msa0129750:intron | 35.0% |
| TCCCCACAAAGAATAAAAAC+AGG | + | chr1_3:59820827-59820846 | None:intergenic | 35.0% | |
| AGATGTCATAGTCTCTAAGT+AGG | + | chr1_3:59821218-59821237 | None:intergenic | 35.0% | |
| !! | TCTGGCATTTAAGGAGTATT+TGG | + | chr1_3:59821815-59821834 | None:intergenic | 35.0% |
| AAAAAGTCGTCTGGCATTTA+AGG | + | chr1_3:59821824-59821843 | None:intergenic | 35.0% | |
| ! | TTTGACATCAGTGACCATTT+TGG | - | chr1_3:59821898-59821917 | Msa0129750:intron | 35.0% |
| GTTCTGACAAACAAATGCTA+AGG | + | chr1_3:59821966-59821985 | None:intergenic | 35.0% | |
| ! | TTTTGGATTTGATACTGCTG+TGG | - | chr1_3:59822104-59822123 | Msa0129750:intron | 35.0% |
| CTAATAGCAACAGTTGTAAC+AGG | - | chr1_3:59822687-59822706 | Msa0129750:intron | 35.0% | |
| ! | TCCAGAGTCTCCATTTTATT+TGG | - | chr1_3:59822723-59822742 | Msa0129750:intron | 35.0% |
| TCCAAATAAAATGGAGACTC+TGG | + | chr1_3:59822727-59822746 | None:intergenic | 35.0% | |
| !! | GAGTCTCCATTTTATTTGGA+AGG | - | chr1_3:59822727-59822746 | Msa0129750:intron | 35.0% |
| CCTCTTCCTTCCAAATAAAA+TGG | + | chr1_3:59822736-59822755 | None:intergenic | 35.0% | |
| !! | CCATTTTATTTGGAAGGAAG+AGG | - | chr1_3:59822733-59822752 | Msa0129750:intron | 35.0% |
| !! | TTTTATTTGGAAGGAAGAGG+CGG | - | chr1_3:59822736-59822755 | Msa0129750:intron | 35.0% |
| TTAGTTATTGTGGTAGCAGA+AGG | - | chr1_3:59822802-59822821 | Msa0129750:intron | 35.0% | |
| AACAAGCTACTTCTTGATGT+TGG | - | chr1_3:59822886-59822905 | Msa0129750:intron | 35.0% | |
| GGATCATACCTTGATCTTAT+TGG | + | chr1_3:59822923-59822942 | None:intergenic | 35.0% | |
| TACAAGAGAAGGAAAGATGA+TGG | + | chr1_3:59822944-59822963 | None:intergenic | 35.0% | |
| AGTGTACAGAATACAAGAGA+AGG | + | chr1_3:59822955-59822974 | None:intergenic | 35.0% | |
| !! | GACTGATAATGGCATAAATG+CGG | + | chr1_3:59822988-59823007 | None:intergenic | 35.0% |
| AAAACCATACTCAGAACTTC+TGG | + | chr1_3:59823412-59823431 | None:intergenic | 35.0% | |
| AAATACAACCTCCTTTGTAC+AGG | - | chr1_3:59823469-59823488 | Msa0129750:intron | 35.0% | |
| TGTGAAATGATCCTGTACAA+AGG | + | chr1_3:59823483-59823502 | None:intergenic | 35.0% | |
| TTCATATTTACCGCCATCTT+TGG | + | chr1_3:59823512-59823531 | None:intergenic | 35.0% | |
| TGTTACTGAATCAGATGGAA+AGG | - | chr1_3:59823685-59823704 | Msa0129750:intron | 35.0% | |
| ATGAACCACTTACAGCTATT+GGG | + | chr1_3:59824112-59824131 | None:intergenic | 35.0% | |
| AATGAACCACTTACAGCTAT+TGG | + | chr1_3:59824113-59824132 | None:intergenic | 35.0% | |
| GTTGTTTGAACTACACTTTG+AGG | + | chr1_3:59824189-59824208 | None:intergenic | 35.0% | |
| GAGTATAGACTATAGTCCAA+TGG | - | chr1_3:59824352-59824371 | Msa0129750:intron | 35.0% | |
| !! | ATTCTAGGAAGCTTTTCCAT+TGG | + | chr1_3:59824371-59824390 | None:intergenic | 35.0% |
| GTTGTGTTGAGGATATGAAA+TGG | - | chr1_3:59824401-59824420 | Msa0129750:intron | 35.0% | |
| GATACACATTAATGCTGATC+AGG | + | chr1_3:59824465-59824484 | None:intergenic | 35.0% | |
| GAATAAGTCGTAGAGTAGTT+TGG | - | chr1_3:59824525-59824544 | Msa0129750:intron | 35.0% | |
| ! | TGCTAGGTTTTTCTTCGATT+TGG | - | chr1_3:59824606-59824625 | Msa0129750:intron | 35.0% |
| ! | ATTGTTATTCAGAGTCGGAC+TGG | + | chr1_3:59817548-59817567 | None:intergenic | 40.0% |
| AGTGAGAGATTGATTGAGTC+AGG | - | chr1_3:59817574-59817593 | Msa0129750:three_prime_UTR | 40.0% | |
| !! | TAGTTGCAGAGAGTTTTGAC+GGG | + | chr1_3:59817697-59817716 | None:intergenic | 40.0% |
| !! | GTAGTTGCAGAGAGTTTTGA+CGG | + | chr1_3:59817698-59817717 | None:intergenic | 40.0% |
| !!! | GTCGTCATTTTGGGTTTGAT+TGG | + | chr1_3:59817829-59817848 | None:intergenic | 40.0% |
| !! | AAAACCGTCGTCGTCATTTT+GGG | + | chr1_3:59817838-59817857 | None:intergenic | 40.0% |
| GAAAGGAGAAAAAACGGTAC+CGG | + | chr1_3:59817906-59817925 | None:intergenic | 40.0% | |
| TTGACTGCAATGTTGTGTCT+GGG | + | chr1_3:59817946-59817965 | None:intergenic | 40.0% | |
| TTTGACTGCAATGTTGTGTC+TGG | + | chr1_3:59817947-59817966 | None:intergenic | 40.0% | |
| ! | TCAATTTGCTCCTCCATATG+AGG | - | chr1_3:59818232-59818251 | Msa0129750:intron | 40.0% |
| !! | GGTTGATTTGTTAAGGGGTT+CGG | - | chr1_3:59818376-59818395 | Msa0129750:intron | 40.0% |
| TTTGGATAGGACTGCAAAAG+AGG | + | chr1_3:59818546-59818565 | None:intergenic | 40.0% | |
| CACAAACAAGGGAGAAGATT+GGG | + | chr1_3:59818813-59818832 | None:intergenic | 40.0% | |
| TCACAAACAAGGGAGAAGAT+TGG | + | chr1_3:59818814-59818833 | None:intergenic | 40.0% | |
| CGATGATGCCTTCGAATATT+AGG | - | chr1_3:59819021-59819040 | Msa0129750:intron | 40.0% | |
| GGCTATATCTTGACTCAACA+TGG | - | chr1_3:59819682-59819701 | Msa0129750:intron | 40.0% | |
| ! | TCTAGAGCGTGGACTAATAT+AGG | - | chr1_3:59819748-59819767 | Msa0129750:intron | 40.0% |
| ATAGACCCAAAGATGGCTTA+AGG | - | chr1_3:59819838-59819857 | Msa0129750:CDS | 40.0% | |
| CTTCAACCTTAAGCCATCTT+TGG | + | chr1_3:59819847-59819866 | None:intergenic | 40.0% | |
| ! | AAGATTGTCCAAGCCTTGTA+AGG | - | chr1_3:59819864-59819883 | Msa0129750:CDS | 40.0% |
| CCCGTCATAATATTCAAGAC+AGG | + | chr1_3:59820020-59820039 | None:intergenic | 40.0% | |
| CACTTTAGGTGTCAATCTCA+TGG | + | chr1_3:59820291-59820310 | None:intergenic | 40.0% | |
| CATGAGATTGACACCTAAAG+TGG | - | chr1_3:59820289-59820308 | Msa0129750:CDS | 40.0% | |
| TGGATATCGCTAACCACTTT+AGG | + | chr1_3:59820305-59820324 | None:intergenic | 40.0% | |
| AGCGATATCCATAAACTTGG+GGG | - | chr1_3:59820314-59820333 | Msa0129750:intron | 40.0% | |
| GAAATGTTCCCCCAAGTTTA+TGG | + | chr1_3:59820325-59820344 | None:intergenic | 40.0% | |
| ACATTTCTTCGTACATCTCG+TGG | - | chr1_3:59820338-59820357 | Msa0129750:intron | 40.0% | |
| GTAGATAACATTGAGGACAG+AGG | - | chr1_3:59820383-59820402 | Msa0129750:intron | 40.0% | |
| TGAGGACAGAGGAATAAATC+AGG | - | chr1_3:59820394-59820413 | Msa0129750:intron | 40.0% | |
| TGAAAAACGTCGTCTTCAAG+TGG | - | chr1_3:59820654-59820673 | Msa0129750:intron | 40.0% | |
| !!! | TTTTTGGCTGCAAACTTTGG+TGG | - | chr1_3:59821015-59821034 | Msa0129750:intron | 40.0% |
| TACCGTTTGTGCTCATAGAT+AGG | - | chr1_3:59821051-59821070 | Msa0129750:intron | 40.0% | |
| ACCGTTTGTGCTCATAGATA+GGG | - | chr1_3:59821052-59821071 | Msa0129750:intron | 40.0% | |
| CCTAAAAATAAGCCTTCGAC+AGG | + | chr1_3:59821154-59821173 | None:intergenic | 40.0% | |
| !! | CCTGTCGAAGGCTTATTTTT+AGG | - | chr1_3:59821151-59821170 | Msa0129750:intron | 40.0% |
| GCCTTTCCAGAAGTTTAGTA+TGG | - | chr1_3:59821184-59821203 | Msa0129750:intron | 40.0% | |
| ! | GCCATACTAAACTTCTGGAA+AGG | + | chr1_3:59821188-59821207 | None:intergenic | 40.0% |
| CGATTCTTCAAAAAGTCGTC+TGG | + | chr1_3:59821833-59821852 | None:intergenic | 40.0% | |
| AAGCTAATGGGAAGATACAG+TGG | - | chr1_3:59822198-59822217 | Msa0129750:intron | 40.0% | |
| CATTGCCATGAATGCAACTT+TGG | - | chr1_3:59822391-59822410 | Msa0129750:CDS | 40.0% | |
| ACTTGCCAAAGTTGCATTCA+TGG | + | chr1_3:59822399-59822418 | None:intergenic | 40.0% | |
| !!! | GGTGTTTTGTTATTGATGGG+TGG | - | chr1_3:59822459-59822478 | Msa0129750:intron | 40.0% |
| TACTTCTTGATGTTGGTCCA+TGG | - | chr1_3:59822893-59822912 | Msa0129750:intron | 40.0% | |
| CTTTGACTGAGCGCTATATT+TGG | - | chr1_3:59823333-59823352 | Msa0129750:intron | 40.0% | |
| !! | TTCTCCAGAAGTTCTGAGTA+TGG | - | chr1_3:59823405-59823424 | Msa0129750:intron | 40.0% |
| GAAATGATCCTGTACAAAGG+AGG | + | chr1_3:59823480-59823499 | None:intergenic | 40.0% | |
| CACAAAGTTTCCAAAGATGG+CGG | - | chr1_3:59823499-59823518 | Msa0129750:intron | 40.0% | |
| ! | ATGTTGTCTGAGGCATTACT+TGG | + | chr1_3:59823993-59824012 | None:intergenic | 40.0% |
| !! | GATATTCTGGCTTCACAGTT+GGG | - | chr1_3:59824060-59824079 | Msa0129750:intron | 40.0% |
| !! | TAAGCATGTTTGCTGTTCAC+AGG | + | chr1_3:59824086-59824105 | None:intergenic | 40.0% |
| TATCTCCCAATAGCTGTAAG+TGG | - | chr1_3:59824104-59824123 | Msa0129750:CDS | 40.0% | |
| ACACATTAATGCTGATCAGG+AGG | + | chr1_3:59824462-59824481 | None:intergenic | 40.0% | |
| TAGCAGAAGGTTGTTAGAGA+AGG | + | chr1_3:59824591-59824610 | None:intergenic | 40.0% | |
| TTCTCTAACAACCTTCTGCT+AGG | - | chr1_3:59824590-59824609 | Msa0129750:intron | 40.0% | |
| TCGAAGAAAAACCTAGCAGA+AGG | + | chr1_3:59824604-59824623 | None:intergenic | 40.0% | |
| ! | CAAGATGTTTTGTGATCAGC+TGG | + | chr1_3:59824774-59824793 | None:intergenic | 40.0% |
| TGGTCAGAGGTAACAAAACT+TGG | + | chr1_3:59824878-59824897 | None:intergenic | 40.0% | |
| TGACCAACAAAGAGTTGAGA+AGG | - | chr1_3:59824892-59824911 | Msa0129750:CDS | 40.0% | |
| TCTCCTTCTCAACTCTTTGT+TGG | + | chr1_3:59824898-59824917 | None:intergenic | 40.0% | |
| ACAAAGAGTTGAGAAGGAGA+TGG | - | chr1_3:59824898-59824917 | Msa0129750:CDS | 40.0% | |
| AGAAGAGAACGAAGTGGAGA+CGG | + | chr1_3:59817640-59817659 | None:intergenic | 45.0% | |
| AGAGAGAGAAGAGAACGAAG+TGG | + | chr1_3:59817646-59817665 | None:intergenic | 45.0% | |
| GAGGAGAGAGAAAATGAAGG+AGG | + | chr1_3:59817675-59817694 | None:intergenic | 45.0% | |
| !!! | TTGTTTTGGCGGGAAAATGG+TGG | + | chr1_3:59817780-59817799 | None:intergenic | 45.0% |
| !!! | GGATTGTTTTGGCGGGAAAA+TGG | + | chr1_3:59817783-59817802 | None:intergenic | 45.0% |
| GTTTGATTGGAAACTCGAGG+AGG | + | chr1_3:59817816-59817835 | None:intergenic | 45.0% | |
| TGGGTTTGATTGGAAACTCG+AGG | + | chr1_3:59817819-59817838 | None:intergenic | 45.0% | |
| CAAACCCAAAATGACGACGA+CGG | - | chr1_3:59817831-59817850 | Msa0129750:CDS | 45.0% | |
| ! | GAAAACCGTCGTCGTCATTT+TGG | + | chr1_3:59817839-59817858 | None:intergenic | 45.0% |
| GATTGGGAAGGAAATTGGTG+AGG | + | chr1_3:59817881-59817900 | None:intergenic | 45.0% | |
| CAATTTCCTTCCCAATCTGC+CGG | - | chr1_3:59817884-59817903 | Msa0129750:intron | 45.0% | |
| !! | AAAAACGGTACCGGCAGATT+GGG | + | chr1_3:59817897-59817916 | None:intergenic | 45.0% |
| !! | AAAAAACGGTACCGGCAGAT+TGG | + | chr1_3:59817898-59817917 | None:intergenic | 45.0% |
| !! | CAAGTAATGGACCAGATCGA+AGG | - | chr1_3:59818323-59818342 | Msa0129750:intron | 45.0% |
| !! | AAGCTTGACTGGTTTGCAGT+GGG | + | chr1_3:59818569-59818588 | None:intergenic | 45.0% |
| !! | TAAGCTTGACTGGTTTGCAG+TGG | + | chr1_3:59818570-59818589 | None:intergenic | 45.0% |
| GTTTGTGCGACCATATCTTC+CGG | + | chr1_3:59818781-59818800 | None:intergenic | 45.0% | |
| ATGCAAGCACGTACTTCTTC+TGG | + | chr1_3:59819058-59819077 | None:intergenic | 45.0% | |
| GTCGCTTAAGCTAGCAATCT+GGG | + | chr1_3:59819623-59819642 | None:intergenic | 45.0% | |
| TTGACTCAACATGGGATCTC+AGG | - | chr1_3:59819691-59819710 | Msa0129750:intron | 45.0% | |
| CATCTCTTCACGCTCAAGAT+TGG | - | chr1_3:59819722-59819741 | Msa0129750:intron | 45.0% | |
| ! | AAGATTGGTCATCTAGAGCG+TGG | - | chr1_3:59819737-59819756 | Msa0129750:intron | 45.0% |
| ! | AGCGTGGACTAATATAGGCA+TGG | - | chr1_3:59819753-59819772 | Msa0129750:CDS | 45.0% |
| ! | GCGTGGACTAATATAGGCAT+GGG | - | chr1_3:59819754-59819773 | Msa0129750:CDS | 45.0% |
| GCTGACTATAGACCCAAAGA+TGG | - | chr1_3:59819831-59819850 | Msa0129750:CDS | 45.0% | |
| TGACGGGAACATTGAGAAGA+AGG | - | chr1_3:59820033-59820052 | Msa0129750:intron | 45.0% | |
| GGGAACATTGAGAAGAAGGT+TGG | - | chr1_3:59820037-59820056 | Msa0129750:intron | 45.0% | |
| AAATTGGGAAACAGCGCTCA+TGG | + | chr1_3:59820178-59820197 | None:intergenic | 45.0% | |
| !!! | CTCTGGGAACTTTTTCAGGA+AGG | - | chr1_3:59820239-59820258 | Msa0129750:intron | 45.0% |
| TTTCTTCGTACATCTCGTGG+AGG | - | chr1_3:59820341-59820360 | Msa0129750:intron | 45.0% | |
| GGACAGAGGAATAAATCAGG+TGG | - | chr1_3:59820397-59820416 | Msa0129750:intron | 45.0% | |
| ! | AATGCGTGCAGCTCCTTTTT+GGG | + | chr1_3:59820531-59820550 | None:intergenic | 45.0% |
| ! | AAATGCGTGCAGCTCCTTTT+TGG | + | chr1_3:59820532-59820551 | None:intergenic | 45.0% |
| CCCCTATCTATGAGCACAAA+CGG | + | chr1_3:59821056-59821075 | None:intergenic | 45.0% | |
| CCGTTTGTGCTCATAGATAG+GGG | - | chr1_3:59821053-59821072 | Msa0129750:intron | 45.0% | |
| TTTGTGCTCATAGATAGGGG+TGG | - | chr1_3:59821056-59821075 | Msa0129750:intron | 45.0% | |
| TTGTGCTCATAGATAGGGGT+GGG | - | chr1_3:59821057-59821076 | Msa0129750:intron | 45.0% | |
| TCATAGATAGGGGTGGGAAT+AGG | - | chr1_3:59821063-59821082 | Msa0129750:intron | 45.0% | |
| AAGCCTTGCAAAGTCTAACC+CGG | + | chr1_3:59821094-59821113 | None:intergenic | 45.0% | |
| !!! | CTTATTTTTAGGCTCGAGCC+TGG | - | chr1_3:59821162-59821181 | Msa0129750:intron | 45.0% |
| ! | ACTAAACTTCTGGAAAGGCC+AGG | + | chr1_3:59821183-59821202 | None:intergenic | 45.0% |
| AGCAGGCCATACTAAACTTC+TGG | + | chr1_3:59821193-59821212 | None:intergenic | 45.0% | |
| TAGTCTCTAAGTAGGCTAGC+AGG | + | chr1_3:59821210-59821229 | None:intergenic | 45.0% | |
| !! | CAGGAGCATCTTCACACAAA+TGG | - | chr1_3:59821626-59821645 | Msa0129750:intron | 45.0% |
| TGCAGCGTTAATGGCTCTTT+GGG | + | chr1_3:59822136-59822155 | None:intergenic | 45.0% | |
| CTTTACAAGCTTCCATCTGC+AGG | - | chr1_3:59822365-59822384 | Msa0129750:CDS | 45.0% | |
| ATGGCAATGAAACCTGCAGA+TGG | + | chr1_3:59822380-59822399 | None:intergenic | 45.0% | |
| AACTTTGGCAAGTCGAGATG+TGG | - | chr1_3:59822406-59822425 | Msa0129750:CDS | 45.0% | |
| AATAAACGAGGAGGAGCAAG+AGG | + | chr1_3:59822636-59822655 | None:intergenic | 45.0% | |
| AGTTCATACAGCTGACGAGA+AGG | - | chr1_3:59822852-59822871 | Msa0129750:intron | 45.0% | |
| TGTGGGATATTGCTTTGCGA+TGG | - | chr1_3:59823142-59823161 | Msa0129750:intron | 45.0% | |
| GTGGGATATTGCTTTGCGAT+GGG | - | chr1_3:59823143-59823162 | Msa0129750:intron | 45.0% | |
| CGATGGGAAATTTACTGACG+TGG | - | chr1_3:59823159-59823178 | Msa0129750:intron | 45.0% | |
| GTGGAAGGCTACAGTCATTT+CGG | + | chr1_3:59823587-59823606 | None:intergenic | 45.0% | |
| CGTGCAGTAAATGTTGTCTG+AGG | + | chr1_3:59824003-59824022 | None:intergenic | 45.0% | |
| ! | CTTGCTCATAGTGCTGTTCA+TGG | - | chr1_3:59824026-59824045 | Msa0129750:intron | 45.0% |
| ! | TAGTGCTGTTCATGGAGCTA+TGG | - | chr1_3:59824034-59824053 | Msa0129750:intron | 45.0% |
| !! | GGATATTCTGGCTTCACAGT+TGG | - | chr1_3:59824059-59824078 | Msa0129750:intron | 45.0% |
| ACCGAATACAGTCCAACTGA+CGG | - | chr1_3:59824814-59824833 | Msa0129750:CDS | 45.0% | |
| CTCAACTCTTTGTTGGTCAG+AGG | + | chr1_3:59824891-59824910 | None:intergenic | 45.0% | |
| !! | TAAAATCTAATATATAATAA+TGG | - | chr1_3:59821444-59821463 | Msa0129750:intron | 5.0% |
| !! | TTATAAATATAAATAAAACA+TGG | - | chr1_3:59822023-59822042 | Msa0129750:intron | 5.0% |
| !! | TAAAAAAAAAAAAAAAATAC+AGG | + | chr1_3:59822249-59822268 | None:intergenic | 5.0% |
| CGGGAGGAGAGAGAAAATGA+AGG | + | chr1_3:59817678-59817697 | None:intergenic | 50.0% | |
| !! | TTGCAGAGAGTTTTGACGGG+AGG | + | chr1_3:59817694-59817713 | None:intergenic | 50.0% |
| ! | AGTTCCGGAGAAAGAGTGCA+CGG | + | chr1_3:59817746-59817765 | None:intergenic | 50.0% |
| ! | TTTTGGCGGGAAAATGGTGG+TGG | + | chr1_3:59817777-59817796 | None:intergenic | 50.0% |
| GGAAGGAAATTGGTGAGGTG+TGG | + | chr1_3:59817876-59817895 | None:intergenic | 50.0% | |
| CGGCAGATTGGGAAGGAAAT+TGG | + | chr1_3:59817886-59817905 | None:intergenic | 50.0% | |
| ! | GGTTTGCAGTGGGTTTGGAT+AGG | + | chr1_3:59818559-59818578 | None:intergenic | 50.0% |
| !! | TGACTGGTTTGCAGTGGGTT+TGG | + | chr1_3:59818564-59818583 | None:intergenic | 50.0% |
| ATGGTCGCACAAACTGTGAG+TGG | - | chr1_3:59818787-59818806 | Msa0129750:intron | 50.0% | |
| CGGCGAAAATGAACTCCTCT+AGG | + | chr1_3:59818933-59818952 | None:intergenic | 50.0% | |
| CGTGCTTGCATAGTGACTTG+TGG | - | chr1_3:59819067-59819086 | Msa0129750:intron | 50.0% | |
| ! | GCTTGCATAGTGACTTGTGG+AGG | - | chr1_3:59819070-59819089 | Msa0129750:intron | 50.0% |
| ACTTGTGGAGGATTATGCCC+AGG | - | chr1_3:59819082-59819101 | Msa0129750:intron | 50.0% | |
| CGTCGCTTAAGCTAGCAATC+TGG | + | chr1_3:59819624-59819643 | None:intergenic | 50.0% | |
| ! | GATTGCTAGCTTAAGCGACG+AGG | - | chr1_3:59819624-59819643 | Msa0129750:intron | 50.0% |
| ! | GGAGGTGATGGTACCCAAAA+AGG | - | chr1_3:59820515-59820534 | Msa0129750:CDS | 50.0% |
| AGGAGCTGCACGCATTTATG+AGG | - | chr1_3:59820535-59820554 | Msa0129750:CDS | 50.0% | |
| GACTTTGCAAGGCTTAAGCC+TGG | - | chr1_3:59821099-59821118 | Msa0129750:intron | 50.0% | |
| AAGCCTTCGACAGGTAACAG+AGG | + | chr1_3:59821145-59821164 | None:intergenic | 50.0% | |
| GTGCAGCGTTAATGGCTCTT+TGG | + | chr1_3:59822137-59822156 | None:intergenic | 50.0% | |
| AGCCATTAACGCTGCACATG+TGG | - | chr1_3:59822140-59822159 | Msa0129750:CDS | 50.0% | |
| CTCCACATGTGCAGCGTTAA+TGG | + | chr1_3:59822145-59822164 | None:intergenic | 50.0% | |
| CATTAACGCTGCACATGTGG+AGG | - | chr1_3:59822143-59822162 | Msa0129750:CDS | 50.0% | |
| ATTGTGGTAGCAGAAGGAGC+TGG | - | chr1_3:59822808-59822827 | Msa0129750:intron | 50.0% | |
| CTGACGAGAAGGATGCATCA+GGG | - | chr1_3:59822863-59822882 | Msa0129750:intron | 50.0% | |
| GGAGCTATGGCAGGATATTC+TGG | - | chr1_3:59824047-59824066 | Msa0129750:intron | 50.0% | |
| AATGCTGATCAGGAGGATGC+CGG | + | chr1_3:59824455-59824474 | None:intergenic | 50.0% | |
| CCCGTCAGTTGGACTGTATT+CGG | + | chr1_3:59824818-59824837 | None:intergenic | 50.0% | |
| CCGAATACAGTCCAACTGAC+GGG | - | chr1_3:59824815-59824834 | Msa0129750:CDS | 50.0% | |
| ! | ATACAGTCCAACTGACGGGT+AGG | - | chr1_3:59824819-59824838 | Msa0129750:CDS | 50.0% |
| AGAGAACGAAGTGGAGACGG+AGG | + | chr1_3:59817637-59817656 | None:intergenic | 55.0% | |
| ! | GAAAGAGTGCACGGTGAGGA+AGG | + | chr1_3:59817737-59817756 | None:intergenic | 55.0% |
| CTCACCGTGCACTCTTTCTC+CGG | - | chr1_3:59817739-59817758 | Msa0129750:CDS | 55.0% | |
| !! | CGGGAAAATGGTGGTGGTAG+TGG | + | chr1_3:59817771-59817790 | None:intergenic | 55.0% |
| !!! | GAGTGGGGGATTGTTTTGGC+GGG | + | chr1_3:59817790-59817809 | None:intergenic | 55.0% |
| !!! | CGAGTGGGGGATTGTTTTGG+CGG | + | chr1_3:59817791-59817810 | None:intergenic | 55.0% |
| ! | GTGCGAGTGGGGGATTGTTT+TGG | + | chr1_3:59817794-59817813 | None:intergenic | 55.0% |
| ! | AAACTCGAGGAGGTGCGAGT+GGG | + | chr1_3:59817806-59817825 | None:intergenic | 55.0% |
| TGAGGTGTGGAACGTCTTCG+AGG | + | chr1_3:59817863-59817882 | None:intergenic | 55.0% | |
| ! | GGAGTTCATTTTCGCCGTGC+TGG | - | chr1_3:59818936-59818955 | Msa0129750:intron | 55.0% |
| ! | CCTTTTCTCGAGGTCCAGCA+CGG | + | chr1_3:59818953-59818972 | None:intergenic | 55.0% |
| ACGTCGTCTTCAAGTGGCTG+TGG | - | chr1_3:59820660-59820679 | Msa0129750:intron | 55.0% | |
| GTCTTCAAGTGGCTGTGGCT+GGG | - | chr1_3:59820665-59820684 | Msa0129750:intron | 55.0% | |
| ! | GAGCCGGGTTAGACTTTGCA+AGG | - | chr1_3:59821088-59821107 | Msa0129750:intron | 55.0% |
| TGCAAGGCTTAAGCCTGGTC+TGG | - | chr1_3:59821104-59821123 | Msa0129750:intron | 55.0% | |
| AGGCCTCTGTTACCTGTCGA+AGG | - | chr1_3:59821139-59821158 | Msa0129750:intron | 55.0% | |
| GCTGACGAGAAGGATGCATC+AGG | - | chr1_3:59822862-59822881 | Msa0129750:intron | 55.0% | |
| GCTGTTCATGGAGCTATGGC+AGG | - | chr1_3:59824038-59824057 | Msa0129750:intron | 55.0% | |
| ! | TCCAACTGACGGGTAGGATG+TGG | - | chr1_3:59824825-59824844 | Msa0129750:CDS | 55.0% |
| ! | CCAACTGACGGGTAGGATGT+GGG | - | chr1_3:59824826-59824845 | Msa0129750:CDS | 55.0% |
| GAACGAAGTGGAGACGGAGG+AGG | + | chr1_3:59817634-59817653 | None:intergenic | 60.0% | |
| GAGTGCACGGTGAGGAAGGT+GGG | + | chr1_3:59817733-59817752 | None:intergenic | 60.0% | |
| AGAGTGCACGGTGAGGAAGG+TGG | + | chr1_3:59817734-59817753 | None:intergenic | 60.0% | |
| ! | CGGAGAAAGAGTGCACGGTG+AGG | + | chr1_3:59817741-59817760 | None:intergenic | 60.0% |
| !! | GTGGTGGTAGTGGCGAGTTC+CGG | + | chr1_3:59817761-59817780 | None:intergenic | 60.0% |
| ! | AACTCGAGGAGGTGCGAGTG+GGG | + | chr1_3:59817805-59817824 | None:intergenic | 60.0% |
| ! | GAAACTCGAGGAGGTGCGAG+TGG | + | chr1_3:59817807-59817826 | None:intergenic | 60.0% |
| !! | ACGGTACCGGCAGATTGGGA+AGG | + | chr1_3:59817893-59817912 | None:intergenic | 60.0% |
| CCGTGCTGGACCTCGAGAAA+AGG | - | chr1_3:59818950-59818969 | Msa0129750:intron | 60.0% | |
| GGGAAACAGCGCTCATGGAC+TGG | + | chr1_3:59820173-59820192 | None:intergenic | 60.0% | |
| CGTCTTCAAGTGGCTGTGGC+TGG | - | chr1_3:59820664-59820683 | Msa0129750:intron | 60.0% | |
| GGTAGCAGAAGGAGCTGGTC+AGG | - | chr1_3:59822813-59822832 | Msa0129750:intron | 60.0% | |
| CCCACATCCTACCCGTCAGT+TGG | + | chr1_3:59824829-59824848 | None:intergenic | 60.0% | |
| AGTGGAGACGGAGGAGGAGG+AGG | + | chr1_3:59817628-59817647 | None:intergenic | 65.0% | |
| CGAAGTGGAGACGGAGGAGG+AGG | + | chr1_3:59817631-59817650 | None:intergenic | 65.0% | |
| ! | ACTCGAGGAGGTGCGAGTGG+GGG | + | chr1_3:59817804-59817823 | None:intergenic | 65.0% |
| GGGGTGGGAATAGGCTGAGC+CGG | - | chr1_3:59821072-59821091 | Msa0129750:intron | 65.0% | |
| GGGTGGGAATAGGCTGAGCC+GGG | - | chr1_3:59821073-59821092 | Msa0129750:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59817544 | 59825138 | 59817544 | ID=Msa0129750;Name=Msa0129750 |
| chr1_3 | mRNA | 59817544 | 59825138 | 59817544 | ID=Msa0129750-mRNA-1;Parent=Msa0129750;Name=Msa0129750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|0.64|0.73|0.93|1|1|15|180|578 |
| chr1_3 | exon | 59817544 | 59817882 | 59817544 | ID=Msa0129750-mRNA-1:exon:19606;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59818564 | 59818718 | 59818564 | ID=Msa0129750-mRNA-1:exon:19605;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59819143 | 59819191 | 59819143 | ID=Msa0129750-mRNA-1:exon:19604;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59819749 | 59819954 | 59819749 | ID=Msa0129750-mRNA-1:exon:19603;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59820255 | 59820324 | 59820255 | ID=Msa0129750-mRNA-1:exon:19602;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59820434 | 59820592 | 59820434 | ID=Msa0129750-mRNA-1:exon:19601;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59821965 | 59822033 | 59821965 | ID=Msa0129750-mRNA-1:exon:19600;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59822126 | 59822179 | 59822126 | ID=Msa0129750-mRNA-1:exon:19599;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59822267 | 59822425 | 59822267 | ID=Msa0129750-mRNA-1:exon:19598;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59823502 | 59823639 | 59823502 | ID=Msa0129750-mRNA-1:exon:19597;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59823711 | 59823773 | 59823711 | ID=Msa0129750-mRNA-1:exon:19596;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59823857 | 59823920 | 59823857 | ID=Msa0129750-mRNA-1:exon:19595;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59824081 | 59824127 | 59824081 | ID=Msa0129750-mRNA-1:exon:19594;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59824429 | 59824479 | 59824429 | ID=Msa0129750-mRNA-1:exon:19593;Parent=Msa0129750-mRNA-1 |
| chr1_3 | exon | 59824777 | 59825138 | 59824777 | ID=Msa0129750-mRNA-1:exon:19592;Parent=Msa0129750-mRNA-1 |
| chr1_3 | five_prime_UTR | 59825071 | 59825138 | 59825071 | ID=Msa0129750-mRNA-1:five_prime_utr;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59824777 | 59825070 | 59824777 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59824429 | 59824479 | 59824429 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59824081 | 59824127 | 59824081 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59823857 | 59823920 | 59823857 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59823711 | 59823773 | 59823711 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59823502 | 59823639 | 59823502 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59822267 | 59822425 | 59822267 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59822126 | 59822179 | 59822126 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59821965 | 59822033 | 59821965 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59820434 | 59820592 | 59820434 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59820255 | 59820324 | 59820255 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59819749 | 59819954 | 59819749 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59819143 | 59819191 | 59819143 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59818564 | 59818718 | 59818564 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | CDS | 59817724 | 59817882 | 59817724 | ID=Msa0129750-mRNA-1:cds;Parent=Msa0129750-mRNA-1 |
| chr1_3 | three_prime_UTR | 59817544 | 59817723 | 59817544 | ID=Msa0129750-mRNA-1:three_prime_utr;Parent=Msa0129750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
