Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129920 | XP_003591688.1 | 98.921 | 649 | 7 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129920 | sp|Q9LZD3|E70A1_ARATH | 77.882 | 642 | 130 | 3 | 9 | 649 | 8 | 638 | 0.0 | 1009 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129920 | G7I413 | 98.921 | 649 | 7 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034690 | Msa0129920 | 0.880466 | 5.363096e-70 | -8.615850e-47 |
| Msa0129920 | Msa0268110 | 0.810535 | 1.098453e-50 | -8.615850e-47 |
| Msa0129920 | Msa1219830 | 0.805495 | 1.298953e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129920 | MtrunA17_Chr1g0197101 | 98.921 | 649 | 7 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1338 |
| Msa0129920 | MtrunA17_Chr1g0177671 | 71.957 | 649 | 166 | 4 | 1 | 649 | 1 | 633 | 0.0 | 937 |
| Msa0129920 | MtrunA17_Chr8g0344461 | 36.516 | 597 | 311 | 9 | 97 | 649 | 41 | 613 | 1.27e-118 | 367 |
| Msa0129920 | MtrunA17_Chr4g0057561 | 32.340 | 671 | 392 | 12 | 9 | 641 | 34 | 680 | 1.81e-115 | 361 |
| Msa0129920 | MtrunA17_Chr5g0431731 | 30.864 | 648 | 395 | 10 | 25 | 649 | 24 | 641 | 8.64e-109 | 342 |
| Msa0129920 | MtrunA17_Chr3g0106431 | 31.473 | 645 | 385 | 9 | 23 | 649 | 22 | 627 | 1.58e-95 | 306 |
| Msa0129920 | MtrunA17_Chr7g0219041 | 31.734 | 542 | 315 | 8 | 129 | 641 | 151 | 666 | 1.67e-89 | 292 |
| Msa0129920 | MtrunA17_Chr6g0462011 | 30.642 | 545 | 326 | 7 | 119 | 641 | 211 | 725 | 4.02e-88 | 290 |
| Msa0129920 | MtrunA17_Chr7g0224041 | 30.466 | 558 | 345 | 11 | 106 | 642 | 116 | 651 | 1.53e-86 | 284 |
| Msa0129920 | MtrunA17_Chr5g0431741 | 33.703 | 451 | 271 | 3 | 208 | 645 | 261 | 696 | 1.37e-85 | 282 |
| Msa0129920 | MtrunA17_Chr3g0086881 | 30.919 | 566 | 337 | 10 | 102 | 645 | 79 | 612 | 9.73e-85 | 278 |
| Msa0129920 | MtrunA17_Chr2g0327741 | 32.135 | 445 | 256 | 5 | 216 | 643 | 168 | 583 | 4.44e-82 | 270 |
| Msa0129920 | MtrunA17_Chr1g0214001 | 31.055 | 512 | 286 | 7 | 187 | 649 | 183 | 676 | 5.30e-78 | 261 |
| Msa0129920 | MtrunA17_Chr4g0030621 | 28.705 | 533 | 331 | 5 | 100 | 609 | 74 | 580 | 8.97e-75 | 252 |
| Msa0129920 | MtrunA17_Chr1g0182041 | 28.218 | 606 | 376 | 13 | 60 | 642 | 35 | 604 | 8.55e-74 | 248 |
| Msa0129920 | MtrunA17_Chr1g0182031 | 29.245 | 530 | 324 | 10 | 131 | 639 | 100 | 599 | 1.40e-73 | 248 |
| Msa0129920 | MtrunA17_Chr1g0147911 | 26.346 | 687 | 400 | 14 | 8 | 642 | 22 | 654 | 1.02e-68 | 237 |
| Msa0129920 | MtrunA17_Chr5g0432091 | 28.062 | 449 | 281 | 7 | 216 | 640 | 272 | 702 | 8.20e-57 | 204 |
| Msa0129920 | MtrunA17_Chr5g0432041 | 28.989 | 445 | 286 | 8 | 208 | 643 | 254 | 677 | 1.61e-55 | 200 |
| Msa0129920 | MtrunA17_Chr5g0431811 | 33.333 | 324 | 203 | 3 | 200 | 517 | 278 | 594 | 1.78e-53 | 198 |
| Msa0129920 | MtrunA17_Chr5g0431811 | 30.081 | 246 | 147 | 4 | 396 | 641 | 848 | 1068 | 2.54e-24 | 108 |
| Msa0129920 | MtrunA17_Chr5g0431761 | 32.997 | 297 | 184 | 2 | 194 | 475 | 245 | 541 | 1.99e-44 | 167 |
| Msa0129920 | MtrunA17_Chr4g0002391 | 23.496 | 698 | 418 | 19 | 5 | 642 | 1 | 642 | 2.25e-43 | 166 |
| Msa0129920 | MtrunA17_Chr3g0104851 | 25.333 | 450 | 296 | 9 | 201 | 639 | 246 | 666 | 4.97e-41 | 159 |
| Msa0129920 | MtrunA17_Chr1g0152401 | 24.654 | 434 | 288 | 11 | 233 | 643 | 274 | 691 | 2.92e-39 | 154 |
| Msa0129920 | MtrunA17_Chr2g0300651 | 22.642 | 689 | 433 | 15 | 5 | 642 | 1 | 640 | 1.01e-38 | 152 |
| Msa0129920 | MtrunA17_Chr5g0431971 | 26.901 | 342 | 218 | 7 | 309 | 644 | 13 | 328 | 1.75e-30 | 122 |
| Msa0129920 | MtrunA17_Chr5g0431881 | 30.488 | 246 | 146 | 4 | 396 | 641 | 3 | 223 | 3.24e-28 | 113 |
| Msa0129920 | MtrunA17_Chr5g0444661 | 28.333 | 300 | 183 | 6 | 280 | 573 | 150 | 423 | 2.64e-26 | 112 |
| Msa0129920 | MtrunA17_Chr5g0431871 | 31.176 | 170 | 115 | 1 | 210 | 377 | 6 | 175 | 1.06e-24 | 102 |
| Msa0129920 | MtrunA17_Chr5g0431991 | 28.758 | 153 | 100 | 3 | 208 | 359 | 253 | 397 | 3.66e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129920 | AT5G03540.1 | 77.882 | 642 | 130 | 3 | 9 | 649 | 8 | 638 | 0.0 | 1009 |
| Msa0129920 | AT5G03540.3 | 74.701 | 668 | 131 | 4 | 9 | 649 | 8 | 664 | 0.0 | 992 |
| Msa0129920 | AT5G52340.1 | 70.108 | 649 | 176 | 5 | 1 | 649 | 1 | 631 | 0.0 | 938 |
| Msa0129920 | AT5G03540.2 | 78.424 | 533 | 103 | 3 | 118 | 649 | 2 | 523 | 0.0 | 834 |
| Msa0129920 | AT5G52350.1 | 56.313 | 499 | 201 | 2 | 146 | 644 | 99 | 580 | 0.0 | 590 |
| Msa0129920 | AT5G50380.1 | 33.284 | 676 | 386 | 13 | 9 | 644 | 24 | 674 | 5.17e-117 | 365 |
| Msa0129920 | AT1G72470.1 | 34.340 | 629 | 337 | 11 | 73 | 649 | 25 | 629 | 4.46e-115 | 358 |
| Msa0129920 | AT3G14090.1 | 34.815 | 540 | 309 | 7 | 132 | 641 | 87 | 613 | 9.36e-112 | 349 |
| Msa0129920 | AT1G54090.1 | 33.651 | 630 | 336 | 10 | 67 | 641 | 9 | 611 | 3.37e-109 | 343 |
| Msa0129920 | AT5G58430.1 | 32.110 | 654 | 393 | 9 | 3 | 641 | 1 | 618 | 1.25e-106 | 336 |
| Msa0129920 | AT5G13990.1 | 32.049 | 571 | 340 | 12 | 97 | 647 | 145 | 687 | 4.21e-92 | 300 |
| Msa0129920 | AT5G13150.1 | 31.148 | 549 | 320 | 8 | 129 | 649 | 134 | 652 | 2.73e-91 | 296 |
| Msa0129920 | AT1G07000.1 | 28.264 | 651 | 398 | 12 | 3 | 640 | 1 | 595 | 1.39e-84 | 277 |
| Msa0129920 | AT3G29400.1 | 29.472 | 682 | 404 | 10 | 5 | 645 | 6 | 651 | 2.45e-83 | 276 |
| Msa0129920 | AT1G07725.1 | 29.859 | 566 | 325 | 10 | 102 | 641 | 72 | 591 | 4.37e-83 | 274 |
| Msa0129920 | AT2G28640.1 | 30.280 | 535 | 309 | 9 | 129 | 645 | 94 | 582 | 3.15e-78 | 261 |
| Msa0129920 | AT5G59730.1 | 29.931 | 578 | 328 | 15 | 100 | 641 | 62 | 598 | 1.87e-77 | 259 |
| Msa0129920 | AT5G59730.2 | 29.931 | 578 | 328 | 15 | 100 | 641 | 62 | 598 | 2.30e-77 | 259 |
| Msa0129920 | AT4G31540.1 | 27.066 | 702 | 395 | 14 | 7 | 644 | 11 | 659 | 4.43e-75 | 254 |
| Msa0129920 | AT2G39380.1 | 26.159 | 604 | 382 | 9 | 67 | 641 | 42 | 610 | 8.82e-72 | 244 |
| Msa0129920 | AT5G61010.1 | 30.258 | 466 | 282 | 7 | 188 | 640 | 190 | 625 | 1.74e-70 | 241 |
| Msa0129920 | AT5G61010.2 | 30.258 | 466 | 282 | 7 | 188 | 640 | 190 | 625 | 1.74e-70 | 241 |
| Msa0129920 | AT3G09520.1 | 27.955 | 533 | 327 | 8 | 135 | 642 | 107 | 607 | 3.67e-70 | 239 |
| Msa0129920 | AT3G09530.1 | 27.967 | 615 | 379 | 14 | 62 | 646 | 27 | 607 | 7.05e-68 | 234 |
| Msa0129920 | AT3G55150.1 | 24.497 | 596 | 402 | 5 | 67 | 641 | 42 | 610 | 6.68e-66 | 228 |
| Msa0129920 | AT2G28650.1 | 31.266 | 403 | 244 | 4 | 216 | 609 | 152 | 530 | 2.12e-60 | 212 |
| Msa0129920 | AT1G51640.1 | 27.703 | 444 | 296 | 10 | 221 | 648 | 200 | 634 | 2.09e-40 | 157 |
Find 148 sgRNAs with CRISPR-Local
Find 519 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCCATTGTGATTGTTTC+TGG | 0.064763 | 1_3:-59987533 | None:intergenic |
| ATGAATCCAGTTTCCGATTT+TGG | 0.109048 | 1_3:-59984538 | None:intergenic |
| CATTTCCACCTTCAAATTCT+TGG | 0.164069 | 1_3:-59986077 | None:intergenic |
| TTTAATTGATTTCTTGCTTT+GGG | 0.188298 | 1_3:+59987941 | Msa0129920:three_prime_UTR |
| TCTTCAATGCTTATCTATTC+AGG | 0.197596 | 1_3:+59987296 | Msa0129920:CDS |
| AAATCACAAGTTATTGAATT+TGG | 0.205271 | 1_3:-59981026 | None:intergenic |
| AAAGCTACAATGGGAGATTT+TGG | 0.212232 | 1_3:+59984512 | Msa0129920:CDS |
| TTCTGGGGATCTCTTGCTTT+TGG | 0.234725 | 1_3:-59985257 | None:intergenic |
| GAAAGAAAGACAGGAGGTTT+TGG | 0.254811 | 1_3:+59980930 | None:intergenic |
| AGATCATTCGTGAAACGTTT+TGG | 0.274941 | 1_3:+59987621 | Msa0129920:CDS |
| GACAACGTTGTCACCATTCT+TGG | 0.281309 | 1_3:+59981199 | Msa0129920:CDS |
| AACTCTATGCGGCCTTCTTC+AGG | 0.283131 | 1_3:+59983456 | Msa0129920:CDS |
| AGATTAGGACACATTCTATT+AGG | 0.291663 | 1_3:+59981443 | Msa0129920:intron |
| GTTTAATTGATTTCTTGCTT+TGG | 0.295148 | 1_3:+59987940 | Msa0129920:three_prime_UTR |
| GGTATTATTATTATATCTCT+TGG | 0.339397 | 1_3:+59987858 | Msa0129920:three_prime_UTR |
| AGGATTTGCTTGGGGATGAT+TGG | 0.359981 | 1_3:+59986364 | Msa0129920:CDS |
| ATGAATGCTTTCACACGCTT+GGG | 0.361381 | 1_3:-59988711 | None:intergenic |
| GTCTCTATGCTACTTAGCTT+TGG | 0.363405 | 1_3:+59985223 | Msa0129920:CDS |
| GAAGAAGGCCGCATAGAGTT+TGG | 0.364783 | 1_3:-59983453 | None:intergenic |
| TGGAAGCCAAAATCGGAAAC+TGG | 0.368171 | 1_3:+59984532 | Msa0129920:CDS |
| GCAATTCAATATTATGTTTG+AGG | 0.371379 | 1_3:+59987503 | Msa0129920:CDS |
| GCGAGTTGCGAGAATCTCTT+AGG | 0.377525 | 1_3:+59987565 | Msa0129920:CDS |
| TGTAGAAGTGGCAAAATTCT+TGG | 0.381055 | 1_3:-59983579 | None:intergenic |
| TGAAGGCTTTGATTCACTTT+CGG | 0.388357 | 1_3:+59985168 | Msa0129920:CDS |
| TTGGGCATTGATTTAATAAG+AGG | 0.392058 | 1_3:+59987877 | Msa0129920:three_prime_UTR |
| CAGGTAAAATTATTGTTTGC+TGG | 0.393369 | 1_3:+59985118 | Msa0129920:intron |
| CAACGTTGTCTGTGATAGTT+TGG | 0.395369 | 1_3:-59981186 | None:intergenic |
| GATTCTCGCAACTCGCTGTC+TGG | 0.398208 | 1_3:-59987558 | None:intergenic |
| GGATTTGCTTGGGGATGATT+GGG | 0.403240 | 1_3:+59986365 | Msa0129920:CDS |
| TATACTATACAGATCATCTA+AGG | 0.409154 | 1_3:-59987917 | None:intergenic |
| TTCTTCCAATACATTAGAAC+GGG | 0.409731 | 1_3:-59984442 | None:intergenic |
| CTGAAGCCAAGGATTTGCTT+GGG | 0.410453 | 1_3:+59986355 | Msa0129920:CDS |
| CAAACAGCGCAGGAGACCTT+TGG | 0.411441 | 1_3:+59985538 | Msa0129920:CDS |
| ATTCAGGGACTTGCCTCATC+TGG | 0.414388 | 1_3:+59987312 | Msa0129920:CDS |
| AATGTAACAAAATTTCAATC+CGG | 0.421296 | 1_3:+59988041 | Msa0129920:three_prime_UTR |
| CTTCAATGCTTATCTATTCA+GGG | 0.422022 | 1_3:+59987297 | Msa0129920:CDS |
| GGACTTGCCTCATCTGGTGG+TGG | 0.424626 | 1_3:+59987318 | Msa0129920:CDS |
| TTCTTGGAAAAGCTGTTTCA+AGG | 0.430170 | 1_3:-59986061 | None:intergenic |
| ATCAGCTATTATTATCGTAC+AGG | 0.431116 | 1_3:+59983274 | Msa0129920:CDS |
| AATGAATGCTTTCACACGCT+TGG | 0.431321 | 1_3:-59988712 | None:intergenic |
| GGTAATGAGGGTGAACATAA+TGG | 0.432381 | 1_3:+59983486 | Msa0129920:CDS |
| GTTTGTGATCAGATATTTGA+AGG | 0.434799 | 1_3:+59985151 | Msa0129920:CDS |
| GTATTATTATTATATCTCTT+GGG | 0.445431 | 1_3:+59987859 | Msa0129920:three_prime_UTR |
| GCATAGTTACAGTAGCTAGC+TGG | 0.446461 | 1_3:-59986107 | None:intergenic |
| GCAGGTGGTGATGGTGGAAC+TGG | 0.451456 | 1_3:+59987351 | Msa0129920:CDS |
| AAGTCTTATCAATATTCTCA+TGG | 0.452813 | 1_3:-59981471 | None:intergenic |
| ATCAATACAAAAGAAATGCT+TGG | 0.453550 | 1_3:+59986424 | Msa0129920:CDS |
| GACTTGCCTCATCTGGTGGT+GGG | 0.455414 | 1_3:+59987319 | Msa0129920:CDS |
| TCAATACAAAAGAAATGCTT+GGG | 0.461872 | 1_3:+59986425 | Msa0129920:CDS |
| GAATATTGATAAGACTTTGA+AGG | 0.462604 | 1_3:+59981477 | Msa0129920:CDS |
| AGTAGTAATGCAGGTGGTGA+TGG | 0.465892 | 1_3:+59987342 | Msa0129920:CDS |
| AAAGTGAAATTGACCTGAGT+TGG | 0.466548 | 1_3:-59981265 | None:intergenic |
| GGAAGCCCGTTCTAATGTAT+TGG | 0.468191 | 1_3:+59984437 | Msa0129920:CDS |
| TAGTATACAATCAAATGCTT+TGG | 0.475222 | 1_3:-59987972 | None:intergenic |
| ATGTAACAAAATTTCAATCC+GGG | 0.477935 | 1_3:+59988042 | Msa0129920:three_prime_UTR |
| CAGCATTATTGTTGTCAGAA+TGG | 0.479922 | 1_3:-59983521 | None:intergenic |
| CACAGTTACTCACAATATAC+AGG | 0.480356 | 1_3:+59983640 | Msa0129920:CDS |
| TCTGAAGCCAAGGATTTGCT+TGG | 0.482743 | 1_3:+59986354 | Msa0129920:CDS |
| TTGAAGAGACTCTCTCATCA+TGG | 0.483497 | 1_3:-59981158 | None:intergenic |
| GAAGAAGATGGGTATAGCAA+TGG | 0.485848 | 1_3:+59981105 | Msa0129920:exon |
| TTCAGGATCACCTGGTAATG+AGG | 0.489335 | 1_3:+59983473 | Msa0129920:CDS |
| TCCATTGTGATTGTTTCTGG+TGG | 0.491110 | 1_3:-59987530 | None:intergenic |
| TCACTTTGATCAATATCGTC+AGG | 0.494553 | 1_3:+59981519 | Msa0129920:CDS |
| TTAATTGATTTCTTGCTTTG+GGG | 0.500328 | 1_3:+59987942 | Msa0129920:three_prime_UTR |
| ATCATCCCCAAGCAAATCCT+TGG | 0.501684 | 1_3:-59986361 | None:intergenic |
| GAAGATCTAGATCGAATGTT+GGG | 0.510440 | 1_3:+59987779 | Msa0129920:CDS |
| AAGAGGCGCTCGGGTTCCAC+AGG | 0.511939 | 1_3:-59983420 | None:intergenic |
| ACTATATTGTCAGATCTGTT+CGG | 0.515069 | 1_3:+59986223 | Msa0129920:CDS |
| AGGCAATCAAAGAGGCGCTC+GGG | 0.516928 | 1_3:-59983429 | None:intergenic |
| CGATGTTCAAAAGCTACAAT+GGG | 0.517888 | 1_3:+59984503 | Msa0129920:CDS |
| CGGCCTTCTTCAGGATCACC+TGG | 0.519910 | 1_3:+59983465 | Msa0129920:CDS |
| AAGAAGATGGGTATAGCAAT+GGG | 0.521890 | 1_3:+59981106 | Msa0129920:exon |
| TGTTAGAATGTTAGAACAGC+GGG | 0.523839 | 1_3:-59980987 | None:intergenic |
| AGCTTTAGTTAACAAACTAC+TGG | 0.524192 | 1_3:-59983226 | None:intergenic |
| GCTCAGCAAATGATTGAAGC+TGG | 0.528097 | 1_3:+59983609 | Msa0129920:CDS |
| AACCCTAAATACATTTATCA+CGG | 0.529803 | 1_3:-59988160 | None:intergenic |
| CATAGTTACAGTAGCTAGCT+GGG | 0.531525 | 1_3:-59986106 | None:intergenic |
| AACCGCCATGCGTCCAACTC+AGG | 0.531883 | 1_3:+59981252 | Msa0129920:CDS |
| AATTATTGTTTGCTGGTGAG+AGG | 0.533969 | 1_3:+59985125 | Msa0129920:CDS |
| TTATGTTCACCCTCATTACC+AGG | 0.534172 | 1_3:-59983483 | None:intergenic |
| TTTCTTCCAATACATTAGAA+CGG | 0.536401 | 1_3:-59984443 | None:intergenic |
| AGCAGAAAGACGGTGGTCAA+AGG | 0.537160 | 1_3:-59981224 | None:intergenic |
| TACAGGCCTCTAGTGGAGAC+TGG | 0.538330 | 1_3:+59987722 | Msa0129920:intron |
| CTGTCAAAGGAAAGAAAGAC+AGG | 0.539382 | 1_3:+59980921 | None:intergenic |
| AGTCTTATCAATATTCTCAT+GGG | 0.544077 | 1_3:-59981470 | None:intergenic |
| CTATTTCAGATCTGAAGCCA+AGG | 0.549916 | 1_3:+59986344 | Msa0129920:intron |
| GTGTATTTGATGTACTTCTG+AGG | 0.551243 | 1_3:-59987752 | None:intergenic |
| ACGATGTTCAAAAGCTACAA+TGG | 0.552013 | 1_3:+59984502 | Msa0129920:CDS |
| CGCTTCTTCAAAATCTCCAA+AGG | 0.555240 | 1_3:-59985554 | None:intergenic |
| CAGGGACTTGCCTCATCTGG+TGG | 0.556427 | 1_3:+59987315 | Msa0129920:CDS |
| AGAAGATCTAGATCGAATGT+TGG | 0.557788 | 1_3:+59987778 | Msa0129920:CDS |
| ATTCTTGGTGGTATAAGAGC+GGG | 0.557992 | 1_3:-59983564 | None:intergenic |
| TGGGCATTGATTTAATAAGA+GGG | 0.559584 | 1_3:+59987878 | Msa0129920:three_prime_UTR |
| CAAAAGAAATGCTTGGGCAA+AGG | 0.560762 | 1_3:+59986431 | Msa0129920:CDS |
| TTCACGAATGATCTGTAGGC+AGG | 0.561888 | 1_3:-59987612 | None:intergenic |
| GTGGTCAAAGGAACCAAGAA+TGG | 0.565526 | 1_3:-59981212 | None:intergenic |
| TGAATGCTTTCACACGCTTG+GGG | 0.568749 | 1_3:-59988710 | None:intergenic |
| TTCTTTCCAGTCTCCACTAG+AGG | 0.569381 | 1_3:-59987728 | None:intergenic |
| TAATTACTACAGGCCTCTAG+TGG | 0.569473 | 1_3:+59987715 | Msa0129920:intron |
| ACCAAATCCTAAAACTAGTG+TGG | 0.570554 | 1_3:+59980962 | Msa0129920:five_prime_UTR |
| TTACCAGGTGATCCTGAAGA+AGG | 0.571119 | 1_3:-59983468 | None:intergenic |
| AAGGCAATCAAAGAGGCGCT+CGG | 0.575952 | 1_3:-59983430 | None:intergenic |
| AAGACTTGCGCAAACAGCGC+AGG | 0.577067 | 1_3:+59985528 | Msa0129920:CDS |
| TTAATAACATAGCTAGTCAA+AGG | 0.580431 | 1_3:-59985625 | None:intergenic |
| GGTGGTGGGAGTAGTAATGC+AGG | 0.583367 | 1_3:+59987333 | Msa0129920:CDS |
| TGCAATAAGAGACGCTGCGA+CGG | 0.583612 | 1_3:+59985495 | Msa0129920:CDS |
| TCAGGATCACCTGGTAATGA+GGG | 0.589847 | 1_3:+59983474 | Msa0129920:CDS |
| CCAAATCCTAAAACTAGTGT+GGG | 0.593708 | 1_3:+59980963 | Msa0129920:five_prime_UTR |
| TAATAAGTGGAAATAAAACC+CGG | 0.594907 | 1_3:-59988060 | None:intergenic |
| ATTGTTGTCAGAATGGTGGT+TGG | 0.594926 | 1_3:-59983514 | None:intergenic |
| TGAGCTAAATCATGTAGAAG+TGG | 0.595008 | 1_3:-59983591 | None:intergenic |
| AATGCAAGAGCTGCATTCAG+AGG | 0.600834 | 1_3:+59985312 | Msa0129920:CDS |
| ACAAAGACTGCAGTAACAGA+TGG | 0.602685 | 1_3:+59985592 | Msa0129920:CDS |
| AGTAATGCAGGTGGTGATGG+TGG | 0.603314 | 1_3:+59987345 | Msa0129920:CDS |
| ACGTTTCACGAATGATCTGT+AGG | 0.603500 | 1_3:-59987616 | None:intergenic |
| CAAGAGCACTAGTTAAAGAG+AGG | 0.611140 | 1_3:+59987391 | Msa0129920:CDS |
| AAGGCCGCATAGAGTTTGGA+AGG | 0.614139 | 1_3:-59983449 | None:intergenic |
| GGGCATTGATTTAATAAGAG+GGG | 0.614321 | 1_3:+59987879 | Msa0129920:three_prime_UTR |
| GAATGCTTTCACACGCTTGG+GGG | 0.616253 | 1_3:-59988709 | None:intergenic |
| TGAAGCCAAGGATTTGCTTG+GGG | 0.616640 | 1_3:+59986356 | Msa0129920:CDS |
| TCACGGTTTACAGTTTAGCA+CGG | 0.626004 | 1_3:-59988143 | None:intergenic |
| CGGTTTCAAGAGCAGAAAGA+CGG | 0.627542 | 1_3:-59981234 | None:intergenic |
| GTAGGCAGGTAACAAGACTT+CGG | 0.629917 | 1_3:-59987598 | None:intergenic |
| CATTATTGTTGTCAGAATGG+TGG | 0.631171 | 1_3:-59983518 | None:intergenic |
| ATTGCCTTCCAAACTCTATG+CGG | 0.632226 | 1_3:+59983445 | Msa0129920:CDS |
| ACTACTCCCACCACCAGATG+AGG | 0.635705 | 1_3:-59987325 | None:intergenic |
| TTGGAAAAGCTGTTTCAAGG+TGG | 0.637095 | 1_3:-59986058 | None:intergenic |
| ATGATTGGGTACAAAGACAT+AGG | 0.637558 | 1_3:+59986379 | Msa0129920:CDS |
| CTGTATATTGTGAGTAACTG+TGG | 0.645157 | 1_3:-59983639 | None:intergenic |
| AGAAGTGGCAAAATTCTTGG+TGG | 0.646828 | 1_3:-59983576 | None:intergenic |
| ATTGGGTACAAAGACATAGG+AGG | 0.648878 | 1_3:+59986382 | Msa0129920:CDS |
| AAAGCTGTTTCAAGGTGGAA+CGG | 0.655457 | 1_3:-59986053 | None:intergenic |
| TCCACCAGAAACAATCACAA+TGG | 0.657029 | 1_3:+59987529 | Msa0129920:CDS |
| GGTGGAACTGGAAGTAGTAG+TGG | 0.657683 | 1_3:+59987363 | Msa0129920:CDS |
| GCTTTGCAAATCAATCTAGA+CGG | 0.660922 | 1_3:+59986141 | Msa0129920:CDS |
| CTTGGTGGTATAAGAGCGGG+AGG | 0.662439 | 1_3:-59983561 | None:intergenic |
| GGTGGGAGTAGTAATGCAGG+TGG | 0.666620 | 1_3:+59987336 | Msa0129920:CDS |
| AGTTTGGAAGGCAATCAAAG+AGG | 0.666748 | 1_3:-59983437 | None:intergenic |
| ATTGACCTGAGTTGGACGCA+TGG | 0.667277 | 1_3:-59981257 | None:intergenic |
| ACGTGACTACAGCAAACCTG+TGG | 0.673150 | 1_3:+59983404 | Msa0129920:intron |
| AATTCTTGGTGGTATAAGAG+CGG | 0.676798 | 1_3:-59983565 | None:intergenic |
| ATATTGTGAGTAACTGTGGT+CGG | 0.684757 | 1_3:-59983635 | None:intergenic |
| ATGTTAGAATGTTAGAACAG+CGG | 0.690054 | 1_3:-59980988 | None:intergenic |
| ATATTGTCAGATCTGTTCGG+AGG | 0.690173 | 1_3:+59986226 | Msa0129920:CDS |
| TTTCAAGAGCAGAAAGACGG+TGG | 0.694987 | 1_3:-59981231 | None:intergenic |
| TCAAAGGAAAGAAAGACAGG+AGG | 0.698133 | 1_3:+59980924 | None:intergenic |
| GACCTGAGTTGGACGCATGG+CGG | 0.698388 | 1_3:-59981254 | None:intergenic |
| AAGATGGGTATAGCAATGGG+TGG | 0.707175 | 1_3:+59981109 | Msa0129920:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTTTGTTTAAAAAT+TGG | + | chr1_3:59981283-59981302 | Msa0129920:intron | 10.0% |
| !! | TTAAATATTTAACATGTATA+AGG | + | chr1_3:59983888-59983907 | Msa0129920:intron | 10.0% |
| !!! | AAAAATATTTTATAGTTTTG+TGG | + | chr1_3:59985813-59985832 | Msa0129920:intron | 10.0% |
| !! | CAAAAAAAAAAAATAATAAG+TGG | - | chr1_3:59988076-59988095 | None:intergenic | 10.0% |
| !!! | CTTATTATTTTTTTTTTTTG+AGG | + | chr1_3:59988076-59988095 | Msa0129920:three_prime_UTR | 10.0% |
| !!! | TATTATTTTTTTTTTTTGAG+GGG | + | chr1_3:59988078-59988097 | Msa0129920:three_prime_UTR | 10.0% |
| !!! | AAAAAATTCTGAATTTTTTT+TGG | + | chr1_3:59988461-59988480 | Msa0129920:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr1_3:59988493-59988512 | Msa0129920:intron | 10.0% |
| !!! | TTGTTTAAAAATTGGATTTT+TGG | + | chr1_3:59981291-59981310 | Msa0129920:intron | 15.0% |
| !! | AAATTAAGATAGAAAAAGAA+AGG | - | chr1_3:59982697-59982716 | None:intergenic | 15.0% |
| !!! | TTTTCTATCTTAATTTGTAA+TGG | + | chr1_3:59982701-59982720 | Msa0129920:intron | 15.0% |
| !!! | TTTAACTTCATAAATTCATA+TGG | - | chr1_3:59982826-59982845 | None:intergenic | 15.0% |
| !!! | ACAATTTTATAACTCTAAAA+AGG | - | chr1_3:59984017-59984036 | None:intergenic | 15.0% |
| !!! | AAAGTACAAATAATTTTTCT+GGG | - | chr1_3:59985276-59985295 | None:intergenic | 15.0% |
| !!! | AAAAGTACAAATAATTTTTC+TGG | - | chr1_3:59985277-59985296 | None:intergenic | 15.0% |
| !!! | AGAAAAATTATTTGTACTTT+TGG | + | chr1_3:59985276-59985295 | Msa0129920:CDS | 15.0% |
| !! | TATTACTACTAACAAAATAT+CGG | - | chr1_3:59986523-59986542 | None:intergenic | 15.0% |
| !! | TATATCACATACAATATTAA+TGG | - | chr1_3:59987677-59987696 | None:intergenic | 15.0% |
| !! | GTATTATTATTATATCTCTT+GGG | + | chr1_3:59987859-59987878 | Msa0129920:three_prime_UTR | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr1_3:59988261-59988280 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | + | chr1_3:59988577-59988596 | Msa0129920:intron | 15.0% |
| !! | GAAAAGTTAACATATTTATA+GGG | + | chr1_3:59988637-59988656 | Msa0129920:intron | 15.0% |
| !! | AAATCACAAGTTATTGAATT+TGG | - | chr1_3:59981029-59981048 | None:intergenic | 20.0% |
| !!! | AAAAATTGGATTTTTGGATT+TGG | + | chr1_3:59981297-59981316 | Msa0129920:intron | 20.0% |
| !!! | AAAATTGGATTTTTGGATTT+GGG | + | chr1_3:59981298-59981317 | Msa0129920:intron | 20.0% |
| !!! | AGTTGGATTTTTTTTTGATT+TGG | + | chr1_3:59981413-59981432 | Msa0129920:intron | 20.0% |
| !!! | GTTGGATTTTTTTTTGATTT+GGG | + | chr1_3:59981414-59981433 | Msa0129920:intron | 20.0% |
| !!! | GTGTTTTTTTTTTTTTCCAT+CGG | - | chr1_3:59981967-59981986 | None:intergenic | 20.0% |
| !! | ATGGAAAAAAAAAAAAACAC+AGG | + | chr1_3:59981967-59981986 | Msa0129920:intron | 20.0% |
| !! | TTAAAAGACTTGAATTATAG+TGG | + | chr1_3:59982134-59982153 | Msa0129920:intron | 20.0% |
| !! | TTTGCATTAAGATGTAATTT+AGG | + | chr1_3:59982373-59982392 | Msa0129920:intron | 20.0% |
| !! | AATAACATAATCCATAAAGA+TGG | - | chr1_3:59982462-59982481 | None:intergenic | 20.0% |
| !!! | TCTTTATGGATTATGTTATT+TGG | + | chr1_3:59982462-59982481 | Msa0129920:intron | 20.0% |
| !! | ATAAATTCATATGGAGTTAA+AGG | - | chr1_3:59982817-59982836 | None:intergenic | 20.0% |
| !!! | AAGCATGAAATTTAGTTTAA+CGG | - | chr1_3:59982874-59982893 | None:intergenic | 20.0% |
| !! | TAAACTAAATTTCATGCTTT+AGG | + | chr1_3:59982875-59982894 | Msa0129920:intron | 20.0% |
| !! | AAACTAAATTTCATGCTTTA+GGG | + | chr1_3:59982876-59982895 | Msa0129920:intron | 20.0% |
| !! | CATAAACTCAATAATTAATC+AGG | + | chr1_3:59983360-59983379 | Msa0129920:intron | 20.0% |
| !!! | TTCTATCATAAACCATATTT+TGG | + | chr1_3:59983804-59983823 | Msa0129920:intron | 20.0% |
| !! | TTGTTCAAAAACCTTAATTA+AGG | + | chr1_3:59984033-59984052 | Msa0129920:intron | 20.0% |
| !! | CTTTAATTCACTTTAATGTT+AGG | - | chr1_3:59984337-59984356 | None:intergenic | 20.0% |
| !!! | ATGTTTATCTCCTTTTTTAA+CGG | - | chr1_3:59984750-59984769 | None:intergenic | 20.0% |
| !!! | ATTAATCTAGAGTATATCTT+AGG | + | chr1_3:59984901-59984920 | Msa0129920:intron | 20.0% |
| !!! | AAGTACAAATAATTTTTCTG+GGG | - | chr1_3:59985275-59985294 | None:intergenic | 20.0% |
| !!! | CTCATTTTATATTCAGATTA+AGG | + | chr1_3:59985863-59985882 | Msa0129920:intron | 20.0% |
| !! | ATATTCAGATTAAGGAATTA+TGG | + | chr1_3:59985871-59985890 | Msa0129920:intron | 20.0% |
| !!! | TGTGTGTTGATAATTTTTTT+TGG | + | chr1_3:59985968-59985987 | Msa0129920:intron | 20.0% |
| !!! | GTGTGTTGATAATTTTTTTT+GGG | + | chr1_3:59985969-59985988 | Msa0129920:intron | 20.0% |
| !!! | ATCTGAAATAGAAAAAGATT+TGG | - | chr1_3:59986335-59986354 | None:intergenic | 20.0% |
| !! | AAACTTTATAAACACTACTT+AGG | - | chr1_3:59986879-59986898 | None:intergenic | 20.0% |
| !! | TAAGTAGTGTTTATAAAGTT+TGG | + | chr1_3:59986878-59986897 | Msa0129920:intron | 20.0% |
| !!! | TTTTTTATGAACTTTCAGTT+AGG | + | chr1_3:59987428-59987447 | Msa0129920:intron | 20.0% |
| !!! | TTTTTATGAACTTTCAGTTA+GGG | + | chr1_3:59987429-59987448 | Msa0129920:intron | 20.0% |
| !! | GGTATTATTATTATATCTCT+TGG | + | chr1_3:59987858-59987877 | Msa0129920:three_prime_UTR | 20.0% |
| !!! | TTTAATTGATTTCTTGCTTT+GGG | + | chr1_3:59987941-59987960 | Msa0129920:three_prime_UTR | 20.0% |
| !!! | AAATTTTGTTACATTCACAT+TGG | - | chr1_3:59988036-59988055 | None:intergenic | 20.0% |
| !! | AATGTAACAAAATTTCAATC+CGG | + | chr1_3:59988041-59988060 | Msa0129920:three_prime_UTR | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr1_3:59988201-59988220 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr1_3:59988262-59988281 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr1_3:59988265-59988284 | Msa0129920:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr1_3:59988545-59988564 | Msa0129920:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr1_3:59988546-59988565 | Msa0129920:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr1_3:59988573-59988592 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | + | chr1_3:59988576-59988595 | Msa0129920:intron | 20.0% |
| !! | CGAAAAGTTAACATATTTAT+AGG | + | chr1_3:59988636-59988655 | Msa0129920:intron | 20.0% |
| ! | TAAGAAAAAGAAGAAGAAGA+TGG | + | chr1_3:59981093-59981112 | Msa0129920:exon | 25.0% |
| ! | AAGAAAAAGAAGAAGAAGAT+GGG | + | chr1_3:59981094-59981113 | Msa0129920:exon | 25.0% |
| !! | AGTCTTATCAATATTCTCAT+GGG | - | chr1_3:59981473-59981492 | None:intergenic | 25.0% |
| !! | AAGTCTTATCAATATTCTCA+TGG | - | chr1_3:59981474-59981493 | None:intergenic | 25.0% |
| ! | GAATATTGATAAGACTTTGA+AGG | + | chr1_3:59981477-59981496 | Msa0129920:CDS | 25.0% |
| !! | TGATCTGTTTCTTACAAAAT+AGG | + | chr1_3:59981591-59981610 | Msa0129920:intron | 25.0% |
| ! | AGTATTGTAAATGTTAGTTC+AGG | + | chr1_3:59981706-59981725 | Msa0129920:intron | 25.0% |
| ! | ACAATTATCTTTCATCAATC+TGG | + | chr1_3:59981734-59981753 | Msa0129920:intron | 25.0% |
| !!! | CCAATTTTTCAAACAAGATT+GGG | - | chr1_3:59981846-59981865 | None:intergenic | 25.0% |
| !! | CCAATCTTGTTTGAAAAATT+GGG | + | chr1_3:59981844-59981863 | Msa0129920:intron | 25.0% |
| ! | AAATGATAGTAATAGCATTG+AGG | - | chr1_3:59982228-59982247 | None:intergenic | 25.0% |
| ! | ACAATTGCCATTACAAATTA+AGG | - | chr1_3:59982757-59982776 | None:intergenic | 25.0% |
| ! | AACTAAATTTCATGCTTTAG+GGG | + | chr1_3:59982877-59982896 | Msa0129920:intron | 25.0% |
| !!! | TCATCCAGTATCTAATTTTT+TGG | - | chr1_3:59982930-59982949 | None:intergenic | 25.0% |
| !!! | AGAAGCAACATTCAATTTTT+TGG | + | chr1_3:59983159-59983178 | Msa0129920:CDS | 25.0% |
| ! | AAGAAAAATCTTGTGAGTTA+AGG | + | chr1_3:59983935-59983954 | Msa0129920:intron | 25.0% |
| ! | GAGACTATATAAAATGTTGT+AGG | - | chr1_3:59984139-59984158 | None:intergenic | 25.0% |
| ! | TATCATCATTATTATCATGC+AGG | + | chr1_3:59984415-59984434 | Msa0129920:intron | 25.0% |
| ! | ATCATCATTATTATCATGCA+GGG | + | chr1_3:59984416-59984435 | Msa0129920:intron | 25.0% |
| ! | TTTCTTCCAATACATTAGAA+CGG | - | chr1_3:59984446-59984465 | None:intergenic | 25.0% |
| ! | CAGTAAGTAGATTGTAAAAT+TGG | + | chr1_3:59984574-59984593 | Msa0129920:intron | 25.0% |
| !! | CTATTTGTTACTAGTGAAAA+CGG | - | chr1_3:59984820-59984839 | None:intergenic | 25.0% |
| !!! | TTTTGATTTGTTCCTGATTT+AGG | + | chr1_3:59984950-59984969 | Msa0129920:intron | 25.0% |
| ! | GGAAATAAAAAATTTCATCG+AGG | - | chr1_3:59985411-59985430 | None:intergenic | 25.0% |
| !!! | CAGATTGAAACACTTTTTAA+AGG | + | chr1_3:59985460-59985479 | Msa0129920:intron | 25.0% |
| ! | TTAATAACATAGCTAGTCAA+AGG | - | chr1_3:59985628-59985647 | None:intergenic | 25.0% |
| ! | CTAGAATTAATTTCATGATG+TGG | - | chr1_3:59985709-59985728 | None:intergenic | 25.0% |
| ! | AAATTTGAAGAATTCTGATC+AGG | - | chr1_3:59986024-59986043 | None:intergenic | 25.0% |
| ! | ATCAATACAAAAGAAATGCT+TGG | + | chr1_3:59986424-59986443 | Msa0129920:CDS | 25.0% |
| ! | TCAATACAAAAGAAATGCTT+GGG | + | chr1_3:59986425-59986444 | Msa0129920:CDS | 25.0% |
| ! | TTGATACCATCTTAAAACAT+GGG | - | chr1_3:59986672-59986691 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTTAAAACA+TGG | - | chr1_3:59986673-59986692 | None:intergenic | 25.0% |
| ! | ACTATACAAAGAACAAAACA+AGG | - | chr1_3:59987240-59987259 | None:intergenic | 25.0% |
| !!! | TGAATTTTGATTCTTTTGCT+TGG | + | chr1_3:59987268-59987287 | Msa0129920:intron | 25.0% |
| ! | GTTCATAAAAAAGCAATGAA+AGG | - | chr1_3:59987420-59987439 | None:intergenic | 25.0% |
| !! | ATACAAAAAAGCATGTCAAA+AGG | - | chr1_3:59987466-59987485 | None:intergenic | 25.0% |
| ! | GCAATTCAATATTATGTTTG+AGG | + | chr1_3:59987503-59987522 | Msa0129920:CDS | 25.0% |
| ! | TATACTATACAGATCATCTA+AGG | - | chr1_3:59987920-59987939 | None:intergenic | 25.0% |
| !! | GTTTAATTGATTTCTTGCTT+TGG | + | chr1_3:59987940-59987959 | Msa0129920:three_prime_UTR | 25.0% |
| !! | TTAATTGATTTCTTGCTTTG+GGG | + | chr1_3:59987942-59987961 | Msa0129920:three_prime_UTR | 25.0% |
| ! | TAGTATACAATCAAATGCTT+TGG | - | chr1_3:59987975-59987994 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTACTAGTCTTG+AGG | + | chr1_3:59988009-59988028 | Msa0129920:three_prime_UTR | 25.0% |
| !!! | TGAAATTTTACTAGTCTTGA+GGG | + | chr1_3:59988010-59988029 | Msa0129920:three_prime_UTR | 25.0% |
| ! | ATGTAACAAAATTTCAATCC+GGG | + | chr1_3:59988042-59988061 | Msa0129920:three_prime_UTR | 25.0% |
| ! | TAATAAGTGGAAATAAAACC+CGG | - | chr1_3:59988063-59988082 | None:intergenic | 25.0% |
| ! | AAACCGTGATAAATGTATTT+AGG | + | chr1_3:59988157-59988176 | Msa0129920:intron | 25.0% |
| ! | AACCGTGATAAATGTATTTA+GGG | + | chr1_3:59988158-59988177 | Msa0129920:intron | 25.0% |
| ! | AACCCTAAATACATTTATCA+CGG | - | chr1_3:59988163-59988182 | None:intergenic | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr1_3:59988202-59988221 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr1_3:59988606-59988625 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr1_3:59988605-59988624 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr1_3:59988605-59988624 | Msa0129920:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr1_3:59988606-59988625 | Msa0129920:intron | 25.0% |
| !!! | ACATGGGTTAAATATGTTTT+TGG | - | chr1_3:59988664-59988683 | None:intergenic | 25.0% |
| ATGTTAGAATGTTAGAACAG+CGG | - | chr1_3:59980991-59981010 | None:intergenic | 30.0% | |
| ! | TCAAGTAGTGATTGGAATTT+TGG | + | chr1_3:59981352-59981371 | Msa0129920:intron | 30.0% |
| ! | CAAGTAGTGATTGGAATTTT+GGG | + | chr1_3:59981353-59981372 | Msa0129920:intron | 30.0% |
| ! | AAGTAGTGATTGGAATTTTG+GGG | + | chr1_3:59981354-59981373 | Msa0129920:intron | 30.0% |
| !! | GATTTGTGGTTTTTGAAAGT+TGG | + | chr1_3:59981396-59981415 | Msa0129920:intron | 30.0% |
| AGATTAGGACACATTCTATT+AGG | + | chr1_3:59981443-59981462 | Msa0129920:intron | 30.0% | |
| !!! | GGTTAGTTTTACAATGATCA+TGG | + | chr1_3:59981540-59981559 | Msa0129920:intron | 30.0% |
| !! | TACAATGATCATGGTTTTAC+TGG | + | chr1_3:59981549-59981568 | Msa0129920:intron | 30.0% |
| TTGTAAGAAACAGATCATGT+AGG | - | chr1_3:59981588-59981607 | None:intergenic | 30.0% | |
| TGTTCAATGTCAATCACTAA+AGG | + | chr1_3:59981677-59981696 | Msa0129920:intron | 30.0% | |
| ! | CCCAATCTTGTTTGAAAAAT+TGG | + | chr1_3:59981843-59981862 | Msa0129920:intron | 30.0% |
| !! | CCCAATTTTTCAAACAAGAT+TGG | - | chr1_3:59981847-59981866 | None:intergenic | 30.0% |
| ! | CAAGTCTTTTAACCTTTACT+AGG | - | chr1_3:59982126-59982145 | None:intergenic | 30.0% |
| ATAGCAATGTGCAAATATGA+AGG | + | chr1_3:59982314-59982333 | Msa0129920:intron | 30.0% | |
| AACCAAATAAGACTAGAGTT+GGG | - | chr1_3:59982340-59982359 | None:intergenic | 30.0% | |
| TAACCAAATAAGACTAGAGT+TGG | - | chr1_3:59982341-59982360 | None:intergenic | 30.0% | |
| AAGTCTTACAAGGACTAAAT+TGG | - | chr1_3:59982582-59982601 | None:intergenic | 30.0% | |
| AATTTAGTCCTTGTAAGACT+TGG | + | chr1_3:59982581-59982600 | Msa0129920:intron | 30.0% | |
| AAGATTATCCAAGTCTTACA+AGG | - | chr1_3:59982592-59982611 | None:intergenic | 30.0% | |
| !!! | TTACATCTTGTGCTAGTTTT+TGG | + | chr1_3:59982611-59982630 | Msa0129920:intron | 30.0% |
| !!! | TACATCTTGTGCTAGTTTTT+GGG | + | chr1_3:59982612-59982631 | Msa0129920:intron | 30.0% |
| TGAAGGAAATTCTTAGAACT+TGG | - | chr1_3:59982660-59982679 | None:intergenic | 30.0% | |
| AGGCAGTGTAATTAAAATGA+AGG | - | chr1_3:59982677-59982696 | None:intergenic | 30.0% | |
| !! | TTCCCTACCTTAATTTGTAA+TGG | + | chr1_3:59982747-59982766 | Msa0129920:intron | 30.0% |
| TGCCATTACAAATTAAGGTA+GGG | - | chr1_3:59982752-59982771 | None:intergenic | 30.0% | |
| TTGCCATTACAAATTAAGGT+AGG | - | chr1_3:59982753-59982772 | None:intergenic | 30.0% | |
| !!! | TCTAATTTTTTGGAAGCATG+TGG | - | chr1_3:59982920-59982939 | None:intergenic | 30.0% |
| GCTTCCAAAAAATTAGATAC+TGG | + | chr1_3:59982923-59982942 | Msa0129920:intron | 30.0% | |
| TACTGGATGATGTCAATTTA+AGG | + | chr1_3:59982940-59982959 | Msa0129920:intron | 30.0% | |
| TCATAACGAGGTACATAAAA+AGG | - | chr1_3:59983010-59983029 | None:intergenic | 30.0% | |
| CAGAGGCAAAAATACTTAAA+GGG | + | chr1_3:59983091-59983110 | Msa0129920:CDS | 30.0% | |
| ! | TTGCTTCAAGATAGTTTTCT+AGG | - | chr1_3:59983128-59983147 | None:intergenic | 30.0% |
| !!! | AGCAGTTTTAAGAATAGTGA+TGG | + | chr1_3:59983189-59983208 | Msa0129920:CDS | 30.0% |
| ! | AGCTTTAGTTAACAAACTAC+TGG | - | chr1_3:59983229-59983248 | None:intergenic | 30.0% |
| ATCAGCTATTATTATCGTAC+AGG | + | chr1_3:59983274-59983293 | Msa0129920:CDS | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | chr1_3:59983799-59983818 | None:intergenic | 30.0% | |
| TATAAGGATGTGAAGAATGT+AGG | + | chr1_3:59983904-59983923 | Msa0129920:intron | 30.0% | |
| AAGAAGTCACTCCTTAATTA+AGG | - | chr1_3:59984047-59984066 | None:intergenic | 30.0% | |
| TTGTTAGAAACGTGTACAAT+AGG | - | chr1_3:59984364-59984383 | None:intergenic | 30.0% | |
| ATTGTACACGTTTCTAACAA+TGG | + | chr1_3:59984364-59984383 | Msa0129920:intron | 30.0% | |
| TTGTACACGTTTCTAACAAT+GGG | + | chr1_3:59984365-59984384 | Msa0129920:intron | 30.0% | |
| TTCTTCCAATACATTAGAAC+GGG | - | chr1_3:59984445-59984464 | None:intergenic | 30.0% | |
| ACGAAAAAGTAAAACACGAA+AGG | + | chr1_3:59984675-59984694 | Msa0129920:intron | 30.0% | |
| !!! | CTTTTTTAACGGAAATCATG+TGG | - | chr1_3:59984739-59984758 | None:intergenic | 30.0% |
| CACATGATTTCCGTTAAAAA+AGG | + | chr1_3:59984737-59984756 | Msa0129920:intron | 30.0% | |
| AAACGCAAGAATATACATGT+GGG | - | chr1_3:59984792-59984811 | None:intergenic | 30.0% | |
| TCCGTGTATTGCTATAAATA+GGG | + | chr1_3:59984979-59984998 | Msa0129920:intron | 30.0% | |
| TCCCTATTTATAGCAATACA+CGG | - | chr1_3:59984983-59985002 | None:intergenic | 30.0% | |
| AGACAAAATACTAAGAACCT+CGG | - | chr1_3:59985064-59985083 | None:intergenic | 30.0% | |
| !!! | GTTGAGAGGTTTTAGATAAA+AGG | - | chr1_3:59985090-59985109 | None:intergenic | 30.0% |
| CAGGTAAAATTATTGTTTGC+TGG | + | chr1_3:59985118-59985137 | Msa0129920:intron | 30.0% | |
| GTTTGTGATCAGATATTTGA+AGG | + | chr1_3:59985151-59985170 | Msa0129920:CDS | 30.0% | |
| ATGCAATATCATTTCTGCAT+TGG | + | chr1_3:59985368-59985387 | Msa0129920:intron | 30.0% | |
| AAAAAATTTCATCGAGGCTA+TGG | - | chr1_3:59985405-59985424 | None:intergenic | 30.0% | |
| ACTATATTGTCAGATCTGTT+CGG | + | chr1_3:59986223-59986242 | Msa0129920:CDS | 30.0% | |
| GGTATGTCTTCAACATATAT+TGG | + | chr1_3:59986247-59986266 | Msa0129920:intron | 30.0% | |
| !!! | AGTTTTATTATGCACTGCAA+TGG | + | chr1_3:59986292-59986311 | Msa0129920:intron | 30.0% |
| CAATCTTATAAGCACTACTT+AGG | - | chr1_3:59986600-59986619 | None:intergenic | 30.0% | |
| CTAAGTAGTGCTTATAAGAT+TGG | + | chr1_3:59986598-59986617 | Msa0129920:intron | 30.0% | |
| ! | TTGTTTTCATTCAAGATCCT+TGG | + | chr1_3:59987040-59987059 | Msa0129920:intron | 30.0% |
| ! | TGTTTTCATTCAAGATCCTT+GGG | + | chr1_3:59987041-59987060 | Msa0129920:intron | 30.0% |
| GCATTTACAAAGTGATACAT+TGG | + | chr1_3:59987081-59987100 | Msa0129920:intron | 30.0% | |
| !!! | TTTAGTTTTATGTGCTGAGT+TGG | - | chr1_3:59987139-59987158 | None:intergenic | 30.0% |
| ACTCAGCACATAAAACTAAA+TGG | + | chr1_3:59987139-59987158 | Msa0129920:intron | 30.0% | |
| TCTTCAATGCTTATCTATTC+AGG | + | chr1_3:59987296-59987315 | Msa0129920:CDS | 30.0% | |
| CTTCAATGCTTATCTATTCA+GGG | + | chr1_3:59987297-59987316 | Msa0129920:CDS | 30.0% | |
| !!! | CTTTTTTGTATTGTGTTGTC+AGG | + | chr1_3:59987475-59987494 | Msa0129920:intron | 30.0% |
| AATGGATAGCAATGTCATAA+TGG | - | chr1_3:59987659-59987678 | None:intergenic | 30.0% | |
| CAATGATGTGTAATTACTAC+AGG | + | chr1_3:59987705-59987724 | Msa0129920:intron | 30.0% | |
| !!! | TTCTTTTTTCGATTATCGCT+TGG | - | chr1_3:59987837-59987856 | None:intergenic | 30.0% |
| AGCGATAATCGAAAAAAGAA+TGG | + | chr1_3:59987837-59987856 | Msa0129920:exon | 30.0% | |
| !! | TTGGGCATTGATTTAATAAG+AGG | + | chr1_3:59987877-59987896 | Msa0129920:three_prime_UTR | 30.0% |
| !! | TGGGCATTGATTTAATAAGA+GGG | + | chr1_3:59987878-59987897 | Msa0129920:three_prime_UTR | 30.0% |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr1_3:59988592-59988611 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr1_3:59988592-59988611 | Msa0129920:intron | 30.0% | |
| TAGTGCAGACATAAATACAT+GGG | - | chr1_3:59988680-59988699 | None:intergenic | 30.0% | |
| ! | AAAGAAAGACAGGAGGTTTT+GGG | + | chr1_3:59980931-59980950 | Msa0129920:five_prime_UTR | 35.0% |
| ACCAAATCCTAAAACTAGTG+TGG | + | chr1_3:59980962-59980981 | Msa0129920:five_prime_UTR | 35.0% | |
| CCAAATCCTAAAACTAGTGT+GGG | + | chr1_3:59980963-59980982 | Msa0129920:five_prime_UTR | 35.0% | |
| TGTTAGAATGTTAGAACAGC+GGG | - | chr1_3:59980990-59981009 | None:intergenic | 35.0% | |
| AAGAAGATGGGTATAGCAAT+GGG | + | chr1_3:59981106-59981125 | Msa0129920:exon | 35.0% | |
| AAAGTGAAATTGACCTGAGT+TGG | - | chr1_3:59981268-59981287 | None:intergenic | 35.0% | |
| !! | GATTTGACTTGTGTTTGACT+TGG | + | chr1_3:59981329-59981348 | Msa0129920:intron | 35.0% |
| TCACTTTGATCAATATCGTC+AGG | + | chr1_3:59981519-59981538 | Msa0129920:CDS | 35.0% | |
| AGAACTTGAGTTCTTCATCA+GGG | - | chr1_3:59981790-59981809 | None:intergenic | 35.0% | |
| TAGAACTTGAGTTCTTCATC+AGG | - | chr1_3:59981791-59981810 | None:intergenic | 35.0% | |
| CTAGGCTGGTAAATGATATT+GGG | - | chr1_3:59981908-59981927 | None:intergenic | 35.0% | |
| ACTAGGCTGGTAAATGATAT+TGG | - | chr1_3:59981909-59981928 | None:intergenic | 35.0% | |
| GTCTAAATGGTCTAAACTGT+GGG | + | chr1_3:59982096-59982115 | Msa0129920:intron | 35.0% | |
| TCTAAATGGTCTAAACTGTG+GGG | + | chr1_3:59982097-59982116 | Msa0129920:intron | 35.0% | |
| AATTCGGTAAAAGGCAATAG+CGG | - | chr1_3:59982262-59982281 | None:intergenic | 35.0% | |
| !! | TCTTATTTGGTTAGCTTCAC+TGG | + | chr1_3:59982348-59982367 | Msa0129920:intron | 35.0% |
| TAATCCATAAAGATGGTGAC+TGG | - | chr1_3:59982455-59982474 | None:intergenic | 35.0% | |
| CATACGATTACGTTGTTTGA+TGG | + | chr1_3:59983047-59983066 | Msa0129920:intron | 35.0% | |
| GCAGAGGCAAAAATACTTAA+AGG | + | chr1_3:59983090-59983109 | Msa0129920:CDS | 35.0% | |
| ! | GGTTTGTATTTTGTGCTTAG+TGG | + | chr1_3:59983295-59983314 | Msa0129920:intron | 35.0% |
| ! | TTTTCATCCAACAGACGAAA+AGG | - | chr1_3:59983327-59983346 | None:intergenic | 35.0% |
| GTGGGACAAAAGAAATTTGA+GGG | - | chr1_3:59983386-59983405 | None:intergenic | 35.0% | |
| CATTATTGTTGTCAGAATGG+TGG | - | chr1_3:59983521-59983540 | None:intergenic | 35.0% | |
| CAGCATTATTGTTGTCAGAA+TGG | - | chr1_3:59983524-59983543 | None:intergenic | 35.0% | |
| ! | AATTCTTGGTGGTATAAGAG+CGG | - | chr1_3:59983568-59983587 | None:intergenic | 35.0% |
| TGTAGAAGTGGCAAAATTCT+TGG | - | chr1_3:59983582-59983601 | None:intergenic | 35.0% | |
| TGAGCTAAATCATGTAGAAG+TGG | - | chr1_3:59983594-59983613 | None:intergenic | 35.0% | |
| ATATTGTGAGTAACTGTGGT+CGG | - | chr1_3:59983638-59983657 | None:intergenic | 35.0% | |
| CTGTATATTGTGAGTAACTG+TGG | - | chr1_3:59983642-59983661 | None:intergenic | 35.0% | |
| CACAGTTACTCACAATATAC+AGG | + | chr1_3:59983640-59983659 | Msa0129920:CDS | 35.0% | |
| GTTGACTGTTGCATTGTAAA+AGG | + | chr1_3:59983677-59983696 | Msa0129920:intron | 35.0% | |
| TGTAGAGTTCTACAACAATG+AGG | - | chr1_3:59983834-59983853 | None:intergenic | 35.0% | |
| AAACAATCCCCATCCAATTA+GGG | - | chr1_3:59983970-59983989 | None:intergenic | 35.0% | |
| AGACCTACTTACAAGATTTC+AGG | - | chr1_3:59984164-59984183 | None:intergenic | 35.0% | |
| GAAATCTTGTAAGTAGGTCT+AGG | + | chr1_3:59984164-59984183 | Msa0129920:intron | 35.0% | |
| CTTACTCTCATCGTGATATT+AGG | - | chr1_3:59984233-59984252 | None:intergenic | 35.0% | |
| GTTTAACTACTCACAAGGAT+TGG | + | chr1_3:59984282-59984301 | Msa0129920:intron | 35.0% | |
| TAGGTGTCTAGGTTCATTAT+AGG | - | chr1_3:59984318-59984337 | None:intergenic | 35.0% | |
| CACTTTAATGTTAGGTGTCT+AGG | - | chr1_3:59984329-59984348 | None:intergenic | 35.0% | |
| ! | GTTTCTCAACTCCAAGTTTT+TGG | - | chr1_3:59984473-59984492 | None:intergenic | 35.0% |
| ACGATGTTCAAAAGCTACAA+TGG | + | chr1_3:59984502-59984521 | Msa0129920:CDS | 35.0% | |
| CGATGTTCAAAAGCTACAAT+GGG | + | chr1_3:59984503-59984522 | Msa0129920:CDS | 35.0% | |
| ! | AAAGCTACAATGGGAGATTT+TGG | + | chr1_3:59984512-59984531 | Msa0129920:CDS | 35.0% |
| !! | GAGATTTTGGAAGCCAAAAT+CGG | + | chr1_3:59984525-59984544 | Msa0129920:CDS | 35.0% |
| ! | ATGAATCCAGTTTCCGATTT+TGG | - | chr1_3:59984541-59984560 | None:intergenic | 35.0% |
| GTGGGTTCGTATAAAATCAA+TGG | - | chr1_3:59984717-59984736 | None:intergenic | 35.0% | |
| TTTAACGGAAATCATGTGGT+GGG | - | chr1_3:59984735-59984754 | None:intergenic | 35.0% | |
| ! | TTTTAACGGAAATCATGTGG+TGG | - | chr1_3:59984736-59984755 | None:intergenic | 35.0% |
| GAAACGCAAGAATATACATG+TGG | - | chr1_3:59984793-59984812 | None:intergenic | 35.0% | |
| GTCCGTGTATTGCTATAAAT+AGG | + | chr1_3:59984978-59984997 | Msa0129920:intron | 35.0% | |
| CTCGGAATGTTATTGATACT+GGG | - | chr1_3:59985046-59985065 | None:intergenic | 35.0% | |
| AACCTCTCAACAATATGAAC+AGG | + | chr1_3:59985099-59985118 | Msa0129920:intron | 35.0% | |
| TACCTGTTCATATTGTTGAG+AGG | - | chr1_3:59985104-59985123 | None:intergenic | 35.0% | |
| ! | AATTATTGTTTGCTGGTGAG+AGG | + | chr1_3:59985125-59985144 | Msa0129920:CDS | 35.0% |
| ! | TGAAGGCTTTGATTCACTTT+CGG | + | chr1_3:59985168-59985187 | Msa0129920:CDS | 35.0% |
| CAAACATAGAAAGTCAGCAT+TGG | - | chr1_3:59985432-59985451 | None:intergenic | 35.0% | |
| !! | CTTTGGAGATTTTGAAGAAG+CGG | + | chr1_3:59985555-59985574 | Msa0129920:CDS | 35.0% |
| !!! | TTTTTTTGGGATCTTCATCG+TGG | + | chr1_3:59985982-59986001 | Msa0129920:intron | 35.0% |
| CATCGTGGTTCTTCAAATAT+TGG | + | chr1_3:59985997-59986016 | Msa0129920:intron | 35.0% | |
| ! | TTCTTGGAAAAGCTGTTTCA+AGG | - | chr1_3:59986064-59986083 | None:intergenic | 35.0% |
| ! | CAGCTTTTCCAAGAATTTGA+AGG | + | chr1_3:59986069-59986088 | Msa0129920:CDS | 35.0% |
| ! | CTTTTCCAAGAATTTGAAGG+TGG | + | chr1_3:59986072-59986091 | Msa0129920:CDS | 35.0% |
| CATTTCCACCTTCAAATTCT+TGG | - | chr1_3:59986080-59986099 | None:intergenic | 35.0% | |
| GCTTTGCAAATCAATCTAGA+CGG | + | chr1_3:59986141-59986160 | Msa0129920:CDS | 35.0% | |
| GAAAAAGATGTGTCAATGCA+GGG | - | chr1_3:59986188-59986207 | None:intergenic | 35.0% | |
| AGAAAAAGATGTGTCAATGC+AGG | - | chr1_3:59986189-59986208 | None:intergenic | 35.0% | |
| ATGATTGGGTACAAAGACAT+AGG | + | chr1_3:59986379-59986398 | Msa0129920:CDS | 35.0% | |
| TTAGTAGTAATACGAGCAAG+TGG | + | chr1_3:59986531-59986550 | Msa0129920:intron | 35.0% | |
| ! | AGTGGTTGAGTAGATTTGTT+AGG | + | chr1_3:59986549-59986568 | Msa0129920:intron | 35.0% |
| ACCATCTTAAAACATGGGTT+GGG | - | chr1_3:59986667-59986686 | None:intergenic | 35.0% | |
| TACCATCTTAAAACATGGGT+TGG | - | chr1_3:59986668-59986687 | None:intergenic | 35.0% | |
| ! | TCGAAATGTAGCCTTAATTG+TGG | + | chr1_3:59986764-59986783 | Msa0129920:intron | 35.0% |
| !! | TCCCACATTACTTTGAGATA+TGG | + | chr1_3:59986853-59986872 | Msa0129920:intron | 35.0% |
| GCCATATCTCAAAGTAATGT+GGG | - | chr1_3:59986857-59986876 | None:intergenic | 35.0% | |
| TCAATGATTGAATGAGCTCT+GGG | + | chr1_3:59986952-59986971 | Msa0129920:intron | 35.0% | |
| ! | AGATCATTCGTGAAACGTTT+TGG | + | chr1_3:59987621-59987640 | Msa0129920:CDS | 35.0% |
| ! | GATCATTCGTGAAACGTTTT+GGG | + | chr1_3:59987622-59987641 | Msa0129920:CDS | 35.0% |
| GTGTATTTGATGTACTTCTG+AGG | - | chr1_3:59987755-59987774 | None:intergenic | 35.0% | |
| AGAAGATCTAGATCGAATGT+TGG | + | chr1_3:59987778-59987797 | Msa0129920:CDS | 35.0% | |
| GAAGATCTAGATCGAATGTT+GGG | + | chr1_3:59987779-59987798 | Msa0129920:CDS | 35.0% | |
| !!! | ATGTTGGGCGAATTTTTTGA+AGG | + | chr1_3:59987794-59987813 | Msa0129920:CDS | 35.0% |
| !! | GGGCATTGATTTAATAAGAG+GGG | + | chr1_3:59987879-59987898 | Msa0129920:three_prime_UTR | 35.0% |
| CTAGTGCAGACATAAATACA+TGG | - | chr1_3:59988681-59988700 | None:intergenic | 35.0% | |
| !!! | CCCACACTAGTTTTAGGATT+TGG | - | chr1_3:59980966-59980985 | None:intergenic | 40.0% |
| GAAGAAGATGGGTATAGCAA+TGG | + | chr1_3:59981105-59981124 | Msa0129920:exon | 40.0% | |
| TTGAAGAGACTCTCTCATCA+TGG | - | chr1_3:59981161-59981180 | None:intergenic | 40.0% | |
| CAACGTTGTCTGTGATAGTT+TGG | - | chr1_3:59981189-59981208 | None:intergenic | 40.0% | |
| !! | TGACTTGGTCAAGTAGTGAT+TGG | + | chr1_3:59981344-59981363 | Msa0129920:intron | 40.0% |
| !! | TTGGAATTTTGGGGATCTGA+AGG | + | chr1_3:59981363-59981382 | Msa0129920:intron | 40.0% |
| !! | TGGAATTTTGGGGATCTGAA+GGG | + | chr1_3:59981364-59981383 | Msa0129920:intron | 40.0% |
| !!! | AAGGGTGTTTTGTGGATTTG+TGG | + | chr1_3:59981382-59981401 | Msa0129920:intron | 40.0% |
| ! | TGATTTGGGTGTTGCAGATT+AGG | + | chr1_3:59981428-59981447 | Msa0129920:intron | 40.0% |
| AACTTGAGTTCTTCATCAGG+GGG | - | chr1_3:59981788-59981807 | None:intergenic | 40.0% | |
| GAACTTGAGTTCTTCATCAG+GGG | - | chr1_3:59981789-59981808 | None:intergenic | 40.0% | |
| ! | CTAATTCCCAAGTTGGCATT+GGG | - | chr1_3:59981873-59981892 | None:intergenic | 40.0% |
| ! | ACTAATTCCCAAGTTGGCAT+TGG | - | chr1_3:59981874-59981893 | None:intergenic | 40.0% |
| !! | CCGGTTTTTCAAACGAGATT+GGG | - | chr1_3:59982038-59982057 | None:intergenic | 40.0% |
| CCCAATCTCGTTTGAAAAAC+CGG | + | chr1_3:59982035-59982054 | Msa0129920:intron | 40.0% | |
| !! | TCCGGTTTTTCAAACGAGAT+TGG | - | chr1_3:59982039-59982058 | None:intergenic | 40.0% |
| GGTCTAAATGGTCTAAACTG+TGG | + | chr1_3:59982095-59982114 | Msa0129920:intron | 40.0% | |
| ACATGCGTGAATTCGGTAAA+AGG | - | chr1_3:59982271-59982290 | None:intergenic | 40.0% | |
| GTAACAGACATGCGTGAATT+CGG | - | chr1_3:59982278-59982297 | None:intergenic | 40.0% | |
| ATAAAGATGGTGACTGGTGA+GGG | - | chr1_3:59982449-59982468 | None:intergenic | 40.0% | |
| ! | GTTAAAGAAGCGCATAGGTT+AGG | - | chr1_3:59982505-59982524 | None:intergenic | 40.0% |
| ! | AGCAAGTTAAAGAAGCGCAT+AGG | - | chr1_3:59982510-59982529 | None:intergenic | 40.0% |
| !!! | GCTAGTTTTTGGGTTGAGTT+AGG | + | chr1_3:59982622-59982641 | Msa0129920:intron | 40.0% |
| TTAGAACTTGGACGTTAGCT+AGG | - | chr1_3:59982648-59982667 | None:intergenic | 40.0% | |
| CAACGTAATCGTATGTGTGT+GGG | - | chr1_3:59983042-59983061 | None:intergenic | 40.0% | |
| ACAACGTAATCGTATGTGTG+TGG | - | chr1_3:59983043-59983062 | None:intergenic | 40.0% | |
| GGTATCTTTGATCTGTCAAC+AGG | + | chr1_3:59983068-59983087 | Msa0129920:intron | 40.0% | |
| ! | TAGTTTTCTAGGTCTTCGTG+TGG | - | chr1_3:59983117-59983136 | None:intergenic | 40.0% |
| CGTGGGACAAAAGAAATTTG+AGG | - | chr1_3:59983387-59983406 | None:intergenic | 40.0% | |
| AGTTTGGAAGGCAATCAAAG+AGG | - | chr1_3:59983440-59983459 | None:intergenic | 40.0% | |
| ATTGCCTTCCAAACTCTATG+CGG | + | chr1_3:59983445-59983464 | Msa0129920:CDS | 40.0% | |
| TTATGTTCACCCTCATTACC+AGG | - | chr1_3:59983486-59983505 | None:intergenic | 40.0% | |
| GGTAATGAGGGTGAACATAA+TGG | + | chr1_3:59983486-59983505 | Msa0129920:CDS | 40.0% | |
| ATTGTTGTCAGAATGGTGGT+TGG | - | chr1_3:59983517-59983536 | None:intergenic | 40.0% | |
| ! | ATTCTTGGTGGTATAAGAGC+GGG | - | chr1_3:59983567-59983586 | None:intergenic | 40.0% |
| AGAAGTGGCAAAATTCTTGG+TGG | - | chr1_3:59983579-59983598 | None:intergenic | 40.0% | |
| CAATGAGGTGGACCAAAATA+TGG | - | chr1_3:59983819-59983838 | None:intergenic | 40.0% | |
| AGAGTTCTACAACAATGAGG+TGG | - | chr1_3:59983831-59983850 | None:intergenic | 40.0% | |
| !! | AAGGAAGTGTCAACCCTAAT+TGG | + | chr1_3:59983954-59983973 | Msa0129920:intron | 40.0% |
| AAGTGTCAACCCTAATTGGA+TGG | + | chr1_3:59983958-59983977 | Msa0129920:intron | 40.0% | |
| AGTGTCAACCCTAATTGGAT+GGG | + | chr1_3:59983959-59983978 | Msa0129920:intron | 40.0% | |
| CAAACAATCCCCATCCAATT+AGG | - | chr1_3:59983971-59983990 | None:intergenic | 40.0% | |
| ! | TGATCCCTAGTGATTAGTTG+AGG | + | chr1_3:59983989-59984008 | Msa0129920:intron | 40.0% |
| CTGCCTGAAATCTTGTAAGT+AGG | + | chr1_3:59984158-59984177 | Msa0129920:intron | 40.0% | |
| ATGAGACATATGCTGAACCA+TGG | + | chr1_3:59984259-59984278 | Msa0129920:intron | 40.0% | |
| TGAGACATATGCTGAACCAT+GGG | + | chr1_3:59984260-59984279 | Msa0129920:intron | 40.0% | |
| CTTGTGAGTAGTTAAACCCA+TGG | - | chr1_3:59984279-59984298 | None:intergenic | 40.0% | |
| CATGGGTTTAACTACTCACA+AGG | + | chr1_3:59984277-59984296 | Msa0129920:intron | 40.0% | |
| GAAGAAAGCCTCCAAAAACT+TGG | + | chr1_3:59984459-59984478 | Msa0129920:CDS | 40.0% | |
| !! | TCTCAACTCCAAGTTTTTGG+AGG | - | chr1_3:59984470-59984489 | None:intergenic | 40.0% |
| TGTTACTAGTGAAAACGGAC+AGG | - | chr1_3:59984815-59984834 | None:intergenic | 40.0% | |
| GAATGTTATTGATACTGGGC+TGG | - | chr1_3:59985042-59985061 | None:intergenic | 40.0% | |
| CCTCGGAATGTTATTGATAC+TGG | - | chr1_3:59985047-59985066 | None:intergenic | 40.0% | |
| CCAGTATCAATAACATTCCG+AGG | + | chr1_3:59985044-59985063 | Msa0129920:intron | 40.0% | |
| ! | GTCTCTATGCTACTTAGCTT+TGG | + | chr1_3:59985223-59985242 | Msa0129920:CDS | 40.0% |
| CGCTTCTTCAAAATCTCCAA+AGG | - | chr1_3:59985557-59985576 | None:intergenic | 40.0% | |
| ACAAAGACTGCAGTAACAGA+TGG | + | chr1_3:59985592-59985611 | Msa0129920:CDS | 40.0% | |
| ATCTCTGTAATGAGTGCACA+CGG | - | chr1_3:59985741-59985760 | None:intergenic | 40.0% | |
| ! | AAAGCTGTTTCAAGGTGGAA+CGG | - | chr1_3:59986056-59986075 | None:intergenic | 40.0% |
| ! | TTGGAAAAGCTGTTTCAAGG+TGG | - | chr1_3:59986061-59986080 | None:intergenic | 40.0% |
| CATAGTTACAGTAGCTAGCT+GGG | - | chr1_3:59986109-59986128 | None:intergenic | 40.0% | |
| ATATTGTCAGATCTGTTCGG+AGG | + | chr1_3:59986226-59986245 | Msa0129920:CDS | 40.0% | |
| ! | CTATTTCAGATCTGAAGCCA+AGG | + | chr1_3:59986344-59986363 | Msa0129920:intron | 40.0% |
| ATTGGGTACAAAGACATAGG+AGG | + | chr1_3:59986382-59986401 | Msa0129920:CDS | 40.0% | |
| CAAAAGAAATGCTTGGGCAA+AGG | + | chr1_3:59986431-59986450 | Msa0129920:CDS | 40.0% | |
| TCCCACATTCCTTAGAGATA+TGG | + | chr1_3:59986574-59986593 | Msa0129920:intron | 40.0% | |
| ! | GCCATATCTCTAAGGAATGT+GGG | - | chr1_3:59986578-59986597 | None:intergenic | 40.0% |
| CTACTTAGGCCATATCTCTA+AGG | - | chr1_3:59986586-59986605 | None:intergenic | 40.0% | |
| !! | TGGTTTGGTAGGGTTTAGTT+AGG | + | chr1_3:59986641-59986660 | Msa0129920:intron | 40.0% |
| TGAAGCTCAACAACAGATCT+GGG | - | chr1_3:59986702-59986721 | None:intergenic | 40.0% | |
| CAAAGTGTGTGAAGTGTGAA+CGG | - | chr1_3:59986729-59986748 | None:intergenic | 40.0% | |
| GTTCACACTTCACACACTTT+GGG | + | chr1_3:59986728-59986747 | Msa0129920:intron | 40.0% | |
| CTAGTGGCATACCACAATTA+AGG | - | chr1_3:59986778-59986797 | None:intergenic | 40.0% | |
| !! | CCACTCATTGACTTCAATGA+AGG | - | chr1_3:59986827-59986846 | None:intergenic | 40.0% |
| CCTTCATTGAAGTCAATGAG+TGG | + | chr1_3:59986824-59986843 | Msa0129920:intron | 40.0% | |
| GGCCATATCTCAAAGTAATG+TGG | - | chr1_3:59986858-59986877 | None:intergenic | 40.0% | |
| CTCAATGATTGAATGAGCTC+TGG | + | chr1_3:59986951-59986970 | Msa0129920:intron | 40.0% | |
| CAATGATTGAATGAGCTCTG+GGG | + | chr1_3:59986953-59986972 | Msa0129920:intron | 40.0% | |
| TTAGCTATATTGCTAGCCCA+AGG | - | chr1_3:59987060-59987079 | None:intergenic | 40.0% | |
| !! | TTGGGCTAGCAATATAGCTA+AGG | + | chr1_3:59987059-59987078 | Msa0129920:intron | 40.0% |
| AGAACAAAACAAGGAGACAC+AGG | - | chr1_3:59987231-59987250 | None:intergenic | 40.0% | |
| !! | CAAGAGCACTAGTTAAAGAG+AGG | + | chr1_3:59987391-59987410 | Msa0129920:CDS | 40.0% |
| TCCACCAGAAACAATCACAA+TGG | + | chr1_3:59987529-59987548 | Msa0129920:CDS | 40.0% | |
| !! | TCCATTGTGATTGTTTCTGG+TGG | - | chr1_3:59987533-59987552 | None:intergenic | 40.0% |
| CTGTCCATTGTGATTGTTTC+TGG | - | chr1_3:59987536-59987555 | None:intergenic | 40.0% | |
| ACGTTTCACGAATGATCTGT+AGG | - | chr1_3:59987619-59987638 | None:intergenic | 40.0% | |
| TAATTACTACAGGCCTCTAG+TGG | + | chr1_3:59987715-59987734 | Msa0129920:intron | 40.0% | |
| TCACGGTTTACAGTTTAGCA+CGG | - | chr1_3:59988146-59988165 | None:intergenic | 40.0% | |
| ATGAATGCTTTCACACGCTT+GGG | - | chr1_3:59988714-59988733 | None:intergenic | 40.0% | |
| AATGAATGCTTTCACACGCT+TGG | - | chr1_3:59988715-59988734 | None:intergenic | 40.0% | |
| AAGATGGGTATAGCAATGGG+TGG | + | chr1_3:59981109-59981128 | Msa0129920:exon | 45.0% | |
| GACAACGTTGTCACCATTCT+TGG | + | chr1_3:59981199-59981218 | Msa0129920:CDS | 45.0% | |
| GTGGTCAAAGGAACCAAGAA+TGG | - | chr1_3:59981215-59981234 | None:intergenic | 45.0% | |
| TTTCAAGAGCAGAAAGACGG+TGG | - | chr1_3:59981234-59981253 | None:intergenic | 45.0% | |
| CGGTTTCAAGAGCAGAAAGA+CGG | - | chr1_3:59981237-59981256 | None:intergenic | 45.0% | |
| ! | CAATCTGGTGTTGAGAGAGT+TGG | + | chr1_3:59981749-59981768 | Msa0129920:intron | 45.0% |
| ACTTGAGTTCTTCATCAGGG+GGG | - | chr1_3:59981787-59981806 | None:intergenic | 45.0% | |
| ACTGAATGAACTTTCCCAGC+TGG | + | chr1_3:59981813-59981832 | Msa0129920:intron | 45.0% | |
| CTGAATGAACTTTCCCAGCT+GGG | + | chr1_3:59981814-59981833 | Msa0129920:intron | 45.0% | |
| AGCAGGACTAATTCCCAAGT+TGG | - | chr1_3:59981880-59981899 | None:intergenic | 45.0% | |
| CTCTCTCAAGTCTCAACACT+AGG | - | chr1_3:59981926-59981945 | None:intergenic | 45.0% | |
| GTGTTGAGACTTGAGAGAGT+TGG | + | chr1_3:59981927-59981946 | Msa0129920:intron | 45.0% | |
| GGTAATGTGACTTTCTCCGA+TGG | + | chr1_3:59981948-59981967 | Msa0129920:intron | 45.0% | |
| ACTGAATGAGTTTGCCCTGT+TGG | + | chr1_3:59982005-59982024 | Msa0129920:intron | 45.0% | |
| GATTGGGATGTCTTCCAACA+GGG | - | chr1_3:59982022-59982041 | None:intergenic | 45.0% | |
| AGATTGGGATGTCTTCCAAC+AGG | - | chr1_3:59982023-59982042 | None:intergenic | 45.0% | |
| ! | CAAGTTGGCATCGAGATTTC+CGG | - | chr1_3:59982057-59982076 | None:intergenic | 45.0% |
| GGAAATCTCGATGCCAACTT+GGG | + | chr1_3:59982056-59982075 | Msa0129920:intron | 45.0% | |
| AGCTGGACTAATTCCCAAGT+TGG | - | chr1_3:59982072-59982091 | None:intergenic | 45.0% | |
| ACTGTGGGGATACCTAGTAA+AGG | + | chr1_3:59982111-59982130 | Msa0129920:intron | 45.0% | |
| !! | GGCCCAACTCTAGTCTTATT+TGG | + | chr1_3:59982335-59982354 | Msa0129920:intron | 45.0% |
| CATAAAGATGGTGACTGGTG+AGG | - | chr1_3:59982450-59982469 | None:intergenic | 45.0% | |
| CTCACCAGTCACCATCTTTA+TGG | + | chr1_3:59982448-59982467 | Msa0129920:intron | 45.0% | |
| !! | TCATGCTTTAGGGGCAGAAA+AGG | + | chr1_3:59982886-59982905 | Msa0129920:intron | 45.0% |
| TTTGATCTGTCAACAGGCAG+AGG | + | chr1_3:59983074-59983093 | Msa0129920:intron | 45.0% | |
| ! | GTGTTCACCTTTTCGTCTGT+TGG | + | chr1_3:59983317-59983336 | Msa0129920:intron | 45.0% |
| TTACCAGGTGATCCTGAAGA+AGG | - | chr1_3:59983471-59983490 | None:intergenic | 45.0% | |
| ! | TTCAGGATCACCTGGTAATG+AGG | + | chr1_3:59983473-59983492 | Msa0129920:CDS | 45.0% |
| ! | TCAGGATCACCTGGTAATGA+GGG | + | chr1_3:59983474-59983493 | Msa0129920:CDS | 45.0% |
| GCTCAGCAAATGATTGAAGC+TGG | + | chr1_3:59983609-59983628 | Msa0129920:CDS | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_3:59983749-59983768 | Msa0129920:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_3:59983750-59983769 | Msa0129920:intron | 45.0% |
| GTGTCAACCCTAATTGGATG+GGG | + | chr1_3:59983960-59983979 | Msa0129920:intron | 45.0% | |
| GGCTCCTCAACTAATCACTA+GGG | - | chr1_3:59983996-59984015 | None:intergenic | 45.0% | |
| AGGCTCCTCAACTAATCACT+AGG | - | chr1_3:59983997-59984016 | None:intergenic | 45.0% | |
| GTAAGTAGGTCTAGGTACAC+TGG | + | chr1_3:59984172-59984191 | Msa0129920:intron | 45.0% | |
| TAGGTCTAGGTACACTGGAT+CGG | + | chr1_3:59984177-59984196 | Msa0129920:intron | 45.0% | |
| GGAAGCCCGTTCTAATGTAT+TGG | + | chr1_3:59984437-59984456 | Msa0129920:CDS | 45.0% | |
| TGGAAGCCAAAATCGGAAAC+TGG | + | chr1_3:59984532-59984551 | Msa0129920:CDS | 45.0% | |
| CACGGACTCAATCCTAAATC+AGG | - | chr1_3:59984965-59984984 | None:intergenic | 45.0% | |
| ! | TTCGGAACAGTGTTTTGCTG+AGG | + | chr1_3:59985186-59985205 | Msa0129920:CDS | 45.0% |
| !! | TTCTGGGGATCTCTTGCTTT+TGG | - | chr1_3:59985260-59985279 | None:intergenic | 45.0% |
| AATGCAAGAGCTGCATTCAG+AGG | + | chr1_3:59985312-59985331 | Msa0129920:CDS | 45.0% | |
| AAGAGCTGCATTCAGAGGTA+TGG | + | chr1_3:59985317-59985336 | Msa0129920:intron | 45.0% | |
| ! | GTTTTGTGGTGTTCTGCTCA+TGG | + | chr1_3:59985827-59985846 | Msa0129920:intron | 45.0% |
| GCATAGTTACAGTAGCTAGC+TGG | - | chr1_3:59986110-59986129 | None:intergenic | 45.0% | |
| ! | TCTGAAGCCAAGGATTTGCT+TGG | + | chr1_3:59986354-59986373 | Msa0129920:CDS | 45.0% |
| ! | CTGAAGCCAAGGATTTGCTT+GGG | + | chr1_3:59986355-59986374 | Msa0129920:CDS | 45.0% |
| ! | TGAAGCCAAGGATTTGCTTG+GGG | + | chr1_3:59986356-59986375 | Msa0129920:CDS | 45.0% |
| ATCATCCCCAAGCAAATCCT+TGG | - | chr1_3:59986364-59986383 | None:intergenic | 45.0% | |
| ! | AGGATTTGCTTGGGGATGAT+TGG | + | chr1_3:59986364-59986383 | Msa0129920:CDS | 45.0% |
| ! | GGATTTGCTTGGGGATGATT+GGG | + | chr1_3:59986365-59986384 | Msa0129920:CDS | 45.0% |
| ! | GGCCATATCTCTAAGGAATG+TGG | - | chr1_3:59986579-59986598 | None:intergenic | 45.0% |
| !! | ACAATCCTCACCTTTGAAGC+TGG | + | chr1_3:59986621-59986640 | Msa0129920:intron | 45.0% |
| !! | ACCTTTGAAGCTGGTTTGGT+AGG | + | chr1_3:59986630-59986649 | Msa0129920:intron | 45.0% |
| !! | CCTTTGAAGCTGGTTTGGTA+GGG | + | chr1_3:59986631-59986650 | Msa0129920:intron | 45.0% |
| !!! | GCCCAACCCATGTTTTAAGA+TGG | + | chr1_3:59986663-59986682 | Msa0129920:intron | 45.0% |
| GAAGCTCAACAACAGATCTG+GGG | - | chr1_3:59986701-59986720 | None:intergenic | 45.0% | |
| GTGAAGCTCAACAACAGATC+TGG | - | chr1_3:59986703-59986722 | None:intergenic | 45.0% | |
| CGTTCACACTTCACACACTT+TGG | + | chr1_3:59986727-59986746 | Msa0129920:intron | 45.0% | |
| TACATTTCGAACACACACCC+AGG | - | chr1_3:59986754-59986773 | None:intergenic | 45.0% | |
| TTGGCAAGTTGTGAGTGGAA+AGG | - | chr1_3:59987120-59987139 | None:intergenic | 45.0% | |
| AGTAGTAATGCAGGTGGTGA+TGG | + | chr1_3:59987342-59987361 | Msa0129920:CDS | 45.0% | |
| GTAGGCAGGTAACAAGACTT+CGG | - | chr1_3:59987601-59987620 | None:intergenic | 45.0% | |
| TTCACGAATGATCTGTAGGC+AGG | - | chr1_3:59987615-59987634 | None:intergenic | 45.0% | |
| TTCTTTCCAGTCTCCACTAG+AGG | - | chr1_3:59987731-59987750 | None:intergenic | 45.0% | |
| TGAATGCTTTCACACGCTTG+GGG | - | chr1_3:59988713-59988732 | None:intergenic | 45.0% | |
| !! | TCAAATATATAATTATAATT+AGG | + | chr1_3:59984637-59984656 | Msa0129920:intron | 5.0% |
| !!! | AATTTCATATTTTTATATTT+AGG | + | chr1_3:59985907-59985926 | Msa0129920:intron | 5.0% |
| !!! | TTATTATTTTTTTTTTTTGA+GGG | + | chr1_3:59988077-59988096 | Msa0129920:three_prime_UTR | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr1_3:59988292-59988311 | None:intergenic | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr1_3:59988293-59988312 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTATTTT+AGG | - | chr1_3:59988368-59988387 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+AGG | - | chr1_3:59988422-59988441 | None:intergenic | 5.0% |
| AGCAGAAAGACGGTGGTCAA+AGG | - | chr1_3:59981227-59981246 | None:intergenic | 50.0% | |
| ! | ATTGACCTGAGTTGGACGCA+TGG | - | chr1_3:59981260-59981279 | None:intergenic | 50.0% |
| !!! | GGGATCTGAAGGGTGTTTTG+TGG | + | chr1_3:59981374-59981393 | Msa0129920:intron | 50.0% |
| GATTGGGATATCTCCCAGCT+GGG | - | chr1_3:59981830-59981849 | None:intergenic | 50.0% | |
| AGATTGGGATATCTCCCAGC+TGG | - | chr1_3:59981831-59981850 | None:intergenic | 50.0% | |
| TGGGTATCCCAATGCCAACT+TGG | + | chr1_3:59981863-59981882 | Msa0129920:intron | 50.0% | |
| GGGTATCCCAATGCCAACTT+GGG | + | chr1_3:59981864-59981883 | Msa0129920:intron | 50.0% | |
| TTGGGAATTAGTCCTGCTGC+AGG | + | chr1_3:59981882-59981901 | Msa0129920:intron | 50.0% | |
| AATGATATTGGGCCTGCAGC+AGG | - | chr1_3:59981897-59981916 | None:intergenic | 50.0% | |
| CTCAAGTCTCAACACTAGGC+TGG | - | chr1_3:59981922-59981941 | None:intergenic | 50.0% | |
| CGGAAATCTCGATGCCAACT+TGG | + | chr1_3:59982055-59982074 | Msa0129920:intron | 50.0% | |
| TTGGGAATTAGTCCAGCTGC+AGG | + | chr1_3:59982074-59982093 | Msa0129920:intron | 50.0% | |
| AGTCCAGCTGCAGGTCTAAA+TGG | + | chr1_3:59982083-59982102 | Msa0129920:intron | 50.0% | |
| AGACCATTTAGACCTGCAGC+TGG | - | chr1_3:59982089-59982108 | None:intergenic | 50.0% | |
| TCGTATGTGTGTGGGAGAGA+GGG | - | chr1_3:59983034-59983053 | None:intergenic | 50.0% | |
| ATCGTATGTGTGTGGGAGAG+AGG | - | chr1_3:59983035-59983054 | None:intergenic | 50.0% | |
| !! | CAGGTTTGCTGTAGTCACGT+GGG | - | chr1_3:59983404-59983423 | None:intergenic | 50.0% |
| !! | ACAGGTTTGCTGTAGTCACG+TGG | - | chr1_3:59983405-59983424 | None:intergenic | 50.0% |
| ACGTGACTACAGCAAACCTG+TGG | + | chr1_3:59983404-59983423 | Msa0129920:intron | 50.0% | |
| !! | AAGGCAATCAAAGAGGCGCT+CGG | - | chr1_3:59983433-59983452 | None:intergenic | 50.0% |
| AAGGCCGCATAGAGTTTGGA+AGG | - | chr1_3:59983452-59983471 | None:intergenic | 50.0% | |
| GAAGAAGGCCGCATAGAGTT+TGG | - | chr1_3:59983456-59983475 | None:intergenic | 50.0% | |
| AACTCTATGCGGCCTTCTTC+AGG | + | chr1_3:59983456-59983475 | Msa0129920:CDS | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr1_3:59983748-59983767 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_3:59983751-59983770 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_3:59983748-59983767 | Msa0129920:intron | 50.0% |
| CAACCCCACTTAGTGGGATA+AGG | - | chr1_3:59983756-59983775 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | + | chr1_3:59983754-59983773 | Msa0129920:intron | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | - | chr1_3:59983762-59983781 | None:intergenic | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | - | chr1_3:59983763-59983782 | None:intergenic | 50.0% | |
| !! | ACTAAGTGGGGTTGGCTACA+TGG | + | chr1_3:59983762-59983781 | Msa0129920:intron | 50.0% |
| TGCAATAAGAGACGCTGCGA+CGG | + | chr1_3:59985495-59985514 | Msa0129920:CDS | 50.0% | |
| TGTAATGAGTGCACACGGCA+AGG | - | chr1_3:59985736-59985755 | None:intergenic | 50.0% | |
| CCAAACCAGCTTCAAAGGTG+AGG | - | chr1_3:59986629-59986648 | None:intergenic | 50.0% | |
| !! | CCTCACCTTTGAAGCTGGTT+TGG | + | chr1_3:59986626-59986645 | Msa0129920:intron | 50.0% |
| CCCTACCAAACCAGCTTCAA+AGG | - | chr1_3:59986634-59986653 | None:intergenic | 50.0% | |
| ACTTCACACACTTTGGGCCT+GGG | + | chr1_3:59986734-59986753 | Msa0129920:intron | 50.0% | |
| ACCCAAATGCCGCAATTAGG+CGG | - | chr1_3:59986802-59986821 | None:intergenic | 50.0% | |
| GCAACCCAAATGCCGCAATT+AGG | - | chr1_3:59986805-59986824 | None:intergenic | 50.0% | |
| GCAACCAGCTTGTAAGGTGA+GGG | - | chr1_3:59986908-59986927 | None:intergenic | 50.0% | |
| AGCAACCAGCTTGTAAGGTG+AGG | - | chr1_3:59986909-59986928 | None:intergenic | 50.0% | |
| CACGTAGCAACCAGCTTGTA+AGG | - | chr1_3:59986914-59986933 | None:intergenic | 50.0% | |
| ! | CTGAGTTGGCAAGTTGTGAG+TGG | - | chr1_3:59987125-59987144 | None:intergenic | 50.0% |
| ATTCAGGGACTTGCCTCATC+TGG | + | chr1_3:59987312-59987331 | Msa0129920:CDS | 50.0% | |
| !! | AGTAATGCAGGTGGTGATGG+TGG | + | chr1_3:59987345-59987364 | Msa0129920:CDS | 50.0% |
| GGTGGAACTGGAAGTAGTAG+TGG | + | chr1_3:59987363-59987382 | Msa0129920:CDS | 50.0% | |
| GCGAGTTGCGAGAATCTCTT+AGG | + | chr1_3:59987565-59987584 | Msa0129920:CDS | 50.0% | |
| GAATGCTTTCACACGCTTGG+GGG | - | chr1_3:59988712-59988731 | None:intergenic | 50.0% | |
| !!! | GCGGGTCCCACACTAGTTTT+AGG | - | chr1_3:59980972-59980991 | None:intergenic | 55.0% |
| CGTATGTGTGTGGGAGAGAG+GGG | - | chr1_3:59983033-59983052 | None:intergenic | 55.0% | |
| !! | AGGCAATCAAAGAGGCGCTC+GGG | - | chr1_3:59983432-59983451 | None:intergenic | 55.0% |
| ! | CTTGGTGGTATAAGAGCGGG+AGG | - | chr1_3:59983564-59983583 | None:intergenic | 55.0% |
| AAGACTTGCGCAAACAGCGC+AGG | + | chr1_3:59985528-59985547 | Msa0129920:CDS | 55.0% | |
| CAAACAGCGCAGGAGACCTT+TGG | + | chr1_3:59985538-59985557 | Msa0129920:CDS | 55.0% | |
| CACTTCACACACTTTGGGCC+TGG | + | chr1_3:59986733-59986752 | Msa0129920:intron | 55.0% | |
| CCCAAATGCCGCAATTAGGC+GGG | - | chr1_3:59986801-59986820 | None:intergenic | 55.0% | |
| CCCGCCTAATTGCGGCATTT+GGG | + | chr1_3:59986798-59986817 | Msa0129920:intron | 55.0% | |
| ACCAGCTTGTAAGGTGAGGG+CGG | - | chr1_3:59986905-59986924 | None:intergenic | 55.0% | |
| GACTTGCCTCATCTGGTGGT+GGG | + | chr1_3:59987319-59987338 | Msa0129920:CDS | 55.0% | |
| ACTACTCCCACCACCAGATG+AGG | - | chr1_3:59987328-59987347 | None:intergenic | 55.0% | |
| !! | GGTGGTGGGAGTAGTAATGC+AGG | + | chr1_3:59987333-59987352 | Msa0129920:CDS | 55.0% |
| GGTGGGAGTAGTAATGCAGG+TGG | + | chr1_3:59987336-59987355 | Msa0129920:CDS | 55.0% | |
| GATTCTCGCAACTCGCTGTC+TGG | - | chr1_3:59987561-59987580 | None:intergenic | 55.0% | |
| TACAGGCCTCTAGTGGAGAC+TGG | + | chr1_3:59987722-59987741 | Msa0129920:intron | 55.0% | |
| AACCGCCATGCGTCCAACTC+AGG | + | chr1_3:59981252-59981271 | Msa0129920:CDS | 60.0% | |
| ! | GACCTGAGTTGGACGCATGG+CGG | - | chr1_3:59981257-59981276 | None:intergenic | 60.0% |
| GGGAGAGAGGGGTCATAACG+AGG | - | chr1_3:59983022-59983041 | None:intergenic | 60.0% | |
| CGGCCTTCTTCAGGATCACC+TGG | + | chr1_3:59983465-59983484 | Msa0129920:CDS | 60.0% | |
| GCCACTAGCCCGCCTAATTG+CGG | + | chr1_3:59986790-59986809 | Msa0129920:intron | 60.0% | |
| GCCCGCCTAATTGCGGCATT+TGG | + | chr1_3:59986797-59986816 | Msa0129920:intron | 60.0% | |
| ACCGCCCTCACCTTACAAGC+TGG | + | chr1_3:59986901-59986920 | Msa0129920:intron | 60.0% | |
| CAGGGACTTGCCTCATCTGG+TGG | + | chr1_3:59987315-59987334 | Msa0129920:CDS | 60.0% | |
| GGACTTGCCTCATCTGGTGG+TGG | + | chr1_3:59987318-59987337 | Msa0129920:CDS | 60.0% | |
| !! | GCAGGTGGTGATGGTGGAAC+TGG | + | chr1_3:59987351-59987370 | Msa0129920:CDS | 60.0% |
| GCTTTCACACGCTTGGGGGA+AGG | - | chr1_3:59988708-59988727 | None:intergenic | 60.0% | |
| !! | AAGAGGCGCTCGGGTTCCAC+AGG | - | chr1_3:59983423-59983442 | None:intergenic | 65.0% |
| !! | GCCGCAATTAGGCGGGCTAG+TGG | - | chr1_3:59986794-59986813 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59980931 | 59988747 | 59980931 | ID=Msa0129920;Name=Msa0129920 |
| chr1_3 | mRNA | 59980931 | 59988747 | 59980931 | ID=Msa0129920-mRNA-1;Parent=Msa0129920;Name=Msa0129920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=181|1|1|1|0.91|0.84|13|392|649 |
| chr1_3 | exon | 59980931 | 59981273 | 59980931 | ID=Msa0129920-mRNA-1:exon:19618;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59981445 | 59981540 | 59981445 | ID=Msa0129920-mRNA-1:exon:19619;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59983090 | 59983295 | 59983090 | ID=Msa0129920-mRNA-1:exon:19620;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59983416 | 59983661 | 59983416 | ID=Msa0129920-mRNA-1:exon:19621;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59984437 | 59984575 | 59984437 | ID=Msa0129920-mRNA-1:exon:19622;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59985121 | 59985333 | 59985121 | ID=Msa0129920-mRNA-1:exon:19623;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59985463 | 59985668 | 59985463 | ID=Msa0129920-mRNA-1:exon:19624;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59986050 | 59986247 | 59986050 | ID=Msa0129920-mRNA-1:exon:19625;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59986353 | 59986452 | 59986353 | ID=Msa0129920-mRNA-1:exon:19626;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59987294 | 59987412 | 59987294 | ID=Msa0129920-mRNA-1:exon:19627;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59987497 | 59987643 | 59987497 | ID=Msa0129920-mRNA-1:exon:19628;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59987727 | 59988170 | 59987727 | ID=Msa0129920-mRNA-1:exon:19629;Parent=Msa0129920-mRNA-1 |
| chr1_3 | exon | 59988682 | 59988747 | 59988682 | ID=Msa0129920-mRNA-1:exon:19630;Parent=Msa0129920-mRNA-1 |
| chr1_3 | five_prime_UTR | 59980931 | 59981111 | 59980931 | ID=Msa0129920-mRNA-1:five_prime_utr;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59981112 | 59981273 | 59981112 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59981445 | 59981540 | 59981445 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59983090 | 59983295 | 59983090 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59983416 | 59983661 | 59983416 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59984437 | 59984575 | 59984437 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59985121 | 59985333 | 59985121 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59985463 | 59985668 | 59985463 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59986050 | 59986247 | 59986050 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59986353 | 59986452 | 59986353 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59987294 | 59987412 | 59987294 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59987497 | 59987643 | 59987497 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | CDS | 59987727 | 59987844 | 59987727 | ID=Msa0129920-mRNA-1:cds;Parent=Msa0129920-mRNA-1 |
| chr1_3 | three_prime_UTR | 59987845 | 59988170 | 59987845 | ID=Msa0129920-mRNA-1:three_prime_utr;Parent=Msa0129920-mRNA-1 |
| chr1_3 | three_prime_UTR | 59988682 | 59988747 | 59988682 | ID=Msa0129920-mRNA-1:three_prime_utr;Parent=Msa0129920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
