Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129970 | XP_013469262.1 | 94.397 | 232 | 7 | 1 | 1 | 232 | 1 | 226 | 1.55e-155 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129970 | A0A072VZ15 | 94.397 | 232 | 7 | 1 | 1 | 232 | 1 | 226 | 7.41e-156 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034840 | Msa0129970 | 0.903091 | 4.961322e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129970 | MtrunA17_Chr1g0197151 | 94.397 | 232 | 7 | 1 | 1 | 232 | 1 | 226 | 1.43e-159 | 441 |
| Msa0129970 | MtrunA17_Chr2g0320271 | 51.613 | 186 | 77 | 4 | 6 | 180 | 7 | 190 | 2.15e-54 | 174 |
| Msa0129970 | MtrunA17_Chr4g0028161 | 47.150 | 193 | 83 | 5 | 8 | 182 | 10 | 201 | 1.94e-45 | 152 |
| Msa0129970 | MtrunA17_Chr4g0030841 | 33.168 | 202 | 80 | 7 | 22 | 180 | 16 | 205 | 1.47e-18 | 82.0 |
| Msa0129970 | MtrunA17_Chr2g0327801 | 31.841 | 201 | 84 | 5 | 21 | 180 | 16 | 204 | 2.58e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129970 | AT5G22930.1 | 44.589 | 231 | 98 | 8 | 8 | 211 | 9 | 236 | 6.60e-49 | 160 |
| Msa0129970 | AT2G28140.1 | 45.902 | 183 | 87 | 4 | 8 | 187 | 10 | 183 | 2.61e-41 | 140 |
| Msa0129970 | AT3G44940.1 | 36.154 | 260 | 109 | 6 | 1 | 213 | 1 | 250 | 4.48e-37 | 130 |
| Msa0129970 | AT2G28690.1 | 34.872 | 195 | 96 | 4 | 10 | 181 | 8 | 194 | 9.47e-23 | 92.8 |
| Msa0129970 | AT5G59760.1 | 34.826 | 201 | 103 | 5 | 20 | 200 | 15 | 207 | 2.66e-17 | 78.2 |
Find 59 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGAGATGAAATTGAAAT+TGG | 0.234904 | 1_3:-60036550 | None:intergenic |
| AGTATTAGAAAAGGAGTGTT+AGG | 0.268877 | 1_3:-60036741 | None:intergenic |
| GTGGCAGTGGTAGGTGTTAT+TGG | 0.282992 | 1_3:-60036664 | None:intergenic |
| AAAGTTAAGGCAAGAATATA+AGG | 0.294931 | 1_3:+60035826 | Msa0129970:five_prime_UTR |
| TTTGATGCTGTTGTTGTTGA+TGG | 0.306670 | 1_3:-60036270 | None:intergenic |
| AGGGATCTTGTACTCTCTTC+AGG | 0.319117 | 1_3:+60036595 | Msa0129970:CDS |
| GAAATTGCAGGGATTATTAG+AGG | 0.330852 | 1_3:+60036063 | Msa0129970:intron |
| CTTGCCTTAACTTTATTTCA+TGG | 0.355729 | 1_3:-60035817 | None:intergenic |
| TTCACTTCTTTACACAACTT+TGG | 0.356365 | 1_3:+60036096 | Msa0129970:CDS |
| TTCAAAAGTTTCCCTTTCTC+TGG | 0.371503 | 1_3:-60036424 | None:intergenic |
| GGCTACATTCATATTCCATT+TGG | 0.391789 | 1_3:-60035936 | None:intergenic |
| CTTCATCTTTAAGCAAGAAA+AGG | 0.394071 | 1_3:+60036575 | Msa0129970:CDS |
| CATCAAATGGACAACAAATC+AGG | 0.400642 | 1_3:+60036286 | Msa0129970:CDS |
| AACTTTGCTCAAAAGATCAT+TGG | 0.404110 | 1_3:-60036185 | None:intergenic |
| TTGCAGACTCTTCTTCTAGC+TGG | 0.413895 | 1_3:+60036472 | Msa0129970:CDS |
| TTGCTTAAAGATGAAGGATT+GGG | 0.434349 | 1_3:-60036568 | None:intergenic |
| ATGAATGTAGCCCTCTTACC+TGG | 0.434380 | 1_3:+60035947 | Msa0129970:CDS |
| GGAGATGAAATTGAAATTGG+AGG | 0.441663 | 1_3:-60036547 | None:intergenic |
| TTCATCTTTAAGCAAGAAAA+GGG | 0.445247 | 1_3:+60036576 | Msa0129970:CDS |
| CATCTCTTGCTAAAACCAAA+TGG | 0.447074 | 1_3:+60035921 | Msa0129970:exon |
| CTTGCTTAAAGATGAAGGAT+TGG | 0.451571 | 1_3:-60036569 | None:intergenic |
| AAGAAACCATTGCCAGAGAA+AGG | 0.460475 | 1_3:+60036412 | Msa0129970:CDS |
| ATGGGAGAAGAATATTGTAT+TGG | 0.466173 | 1_3:-60035901 | None:intergenic |
| TGTCCCATGAAATAAAGTTA+AGG | 0.470737 | 1_3:+60035813 | Msa0129970:five_prime_UTR |
| AATTCTAACACTGCTTGAAA+TGG | 0.475288 | 1_3:-60036382 | None:intergenic |
| AACACTGCTTGAAATGGTGT+TGG | 0.476228 | 1_3:-60036376 | None:intergenic |
| TTGCCTTAACTTTATTTCAT+GGG | 0.477575 | 1_3:-60035816 | None:intergenic |
| TTGATGCTGTTGTTGTTGAT+GGG | 0.484986 | 1_3:-60036269 | None:intergenic |
| TCAACAACAACAGCATCAAA+TGG | 0.490443 | 1_3:+60036273 | Msa0129970:CDS |
| AGTTTCCCTTTCTCTGGCAA+TGG | 0.491232 | 1_3:-60036418 | None:intergenic |
| TTGAAGGCAGTGGTAGAAGC+TGG | 0.493393 | 1_3:+60036442 | Msa0129970:CDS |
| AGCAACTATTGTGTCAACTA+AGG | 0.502056 | 1_3:+60036126 | Msa0129970:CDS |
| TTATAGAATTCCCAGGTAAG+AGG | 0.507710 | 1_3:-60035958 | None:intergenic |
| GGATGTTGCCACTGTGGTAA+TGG | 0.515091 | 1_3:-60036496 | None:intergenic |
| AGAAACCATTGCCAGAGAAA+GGG | 0.537284 | 1_3:+60036413 | Msa0129970:CDS |
| AGAAGAAGAGTCTGCAACAA+TGG | 0.538651 | 1_3:-60036466 | None:intergenic |
| TTCACCGAGAGTATTAGAAA+AGG | 0.545178 | 1_3:-60036750 | None:intergenic |
| AGAAAATAAATACCTCATCA+TGG | 0.545855 | 1_3:-60035981 | None:intergenic |
| GTATTAGAAAAGGAGTGTTA+GGG | 0.557044 | 1_3:-60036740 | None:intergenic |
| GGCAAGAATATAAGGAGAGT+AGG | 0.563297 | 1_3:+60035834 | Msa0129970:five_prime_UTR |
| TTGAAATGGTGTTGGAAGTG+TGG | 0.564992 | 1_3:-60036368 | None:intergenic |
| TATAGAATTCCCAGGTAAGA+GGG | 0.568195 | 1_3:-60035957 | None:intergenic |
| TGAATGTAGCCCTCTTACCT+GGG | 0.580887 | 1_3:+60035948 | Msa0129970:CDS |
| TGGTAGGTGTTATTGGTGAG+TGG | 0.584351 | 1_3:-60036657 | None:intergenic |
| ATGAAAACGATGGATGTGGT+AGG | 0.585445 | 1_3:-60036696 | None:intergenic |
| ATAGAGTTGAGTTGTGGAGG+TGG | 0.585714 | 1_3:-60036517 | None:intergenic |
| ATCTCAATAGAGTTGAGTTG+TGG | 0.586362 | 1_3:-60036523 | None:intergenic |
| TATTGCAGTAGAGTATATCA+TGG | 0.591374 | 1_3:-60035859 | None:intergenic |
| CTTTATGAAAACGATGGATG+TGG | 0.596103 | 1_3:-60036700 | None:intergenic |
| AAATGATTTGTGGCAGTGGT+AGG | 0.596554 | 1_3:-60036673 | None:intergenic |
| ATGTGGTAGGAAATGATTTG+TGG | 0.598151 | 1_3:-60036683 | None:intergenic |
| ACACTACTTTATGAAAACGA+TGG | 0.607888 | 1_3:-60036706 | None:intergenic |
| TCAATAGAGTTGAGTTGTGG+AGG | 0.609439 | 1_3:-60036520 | None:intergenic |
| TAGGAAATGATTTGTGGCAG+TGG | 0.609820 | 1_3:-60036677 | None:intergenic |
| TTGTATTGGATATTCAAGTG+AGG | 0.641045 | 1_3:-60035887 | None:intergenic |
| GGAATTCTATAACCATGATG+AGG | 0.654129 | 1_3:+60035969 | Msa0129970:CDS |
| ATCATGGTTATAGAATTCCC+AGG | 0.666715 | 1_3:-60035965 | None:intergenic |
| GGAGGTGGATGTTGCCACTG+TGG | 0.683928 | 1_3:-60036502 | None:intergenic |
| TAGCTGGACCATTACCACAG+TGG | 0.770830 | 1_3:+60036488 | Msa0129970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTGAATAAAAAATATA+GGG | - | chr1_3:60036016-60036035 | None:intergenic | 10.0% |
| !! | AATAAGTGAATAAAAAATAT+AGG | - | chr1_3:60036017-60036036 | None:intergenic | 10.0% |
| !! | ATAAGTGAATAAAAAATATA+GGG | - | chr1_3:60036016-60036035 | None:intergenic | 10.0% |
| !! | AATAAGTGAATAAAAAATAT+AGG | - | chr1_3:60036017-60036036 | None:intergenic | 10.0% |
| ! | GTTGAAAAATAAGACACAAA+AGG | - | chr1_3:60035789-60035808 | None:intergenic | 25.0% |
| !! | TTGCCTTAACTTTATTTCAT+GGG | - | chr1_3:60035819-60035838 | None:intergenic | 25.0% |
| ! | AAAGTTAAGGCAAGAATATA+AGG | + | chr1_3:60035826-60035845 | Msa0129970:five_prime_UTR | 25.0% |
| ! | AGAAAATAAATACCTCATCA+TGG | - | chr1_3:60035984-60036003 | None:intergenic | 25.0% |
| !!! | TGATGAGGTATTTATTTTCT+TGG | + | chr1_3:60035984-60036003 | Msa0129970:intron | 25.0% |
| !! | TTTTCATTCTTGAAATTGCA+GGG | + | chr1_3:60036052-60036071 | Msa0129970:intron | 25.0% |
| !!! | ATTCTTGTTTTTCAAGCATT+AGG | - | chr1_3:60036249-60036268 | None:intergenic | 25.0% |
| ! | TTCATCTTTAAGCAAGAAAA+GGG | + | chr1_3:60036576-60036595 | Msa0129970:CDS | 25.0% |
| ! | GTTGAAAAATAAGACACAAA+AGG | - | chr1_3:60035789-60035808 | None:intergenic | 25.0% |
| !! | TTGCCTTAACTTTATTTCAT+GGG | - | chr1_3:60035819-60035838 | None:intergenic | 25.0% |
| ! | AAAGTTAAGGCAAGAATATA+AGG | + | chr1_3:60035826-60035845 | Msa0129970:five_prime_UTR | 25.0% |
| ! | AGAAAATAAATACCTCATCA+TGG | - | chr1_3:60035984-60036003 | None:intergenic | 25.0% |
| !!! | TGATGAGGTATTTATTTTCT+TGG | + | chr1_3:60035984-60036003 | Msa0129970:intron | 25.0% |
| !! | TTTTCATTCTTGAAATTGCA+GGG | + | chr1_3:60036052-60036071 | Msa0129970:intron | 25.0% |
| !!! | ATTCTTGTTTTTCAAGCATT+AGG | - | chr1_3:60036249-60036268 | None:intergenic | 25.0% |
| ! | TTCATCTTTAAGCAAGAAAA+GGG | + | chr1_3:60036576-60036595 | Msa0129970:CDS | 25.0% |
| TGTCCCATGAAATAAAGTTA+AGG | + | chr1_3:60035813-60035832 | Msa0129970:five_prime_UTR | 30.0% | |
| ! | CTTGCCTTAACTTTATTTCA+TGG | - | chr1_3:60035820-60035839 | None:intergenic | 30.0% |
| TATTGCAGTAGAGTATATCA+TGG | - | chr1_3:60035862-60035881 | None:intergenic | 30.0% | |
| TTGTATTGGATATTCAAGTG+AGG | - | chr1_3:60035890-60035909 | None:intergenic | 30.0% | |
| ATGGGAGAAGAATATTGTAT+TGG | - | chr1_3:60035904-60035923 | None:intergenic | 30.0% | |
| !!! | ATTTGGTTTTAGCAAGAGAT+GGG | - | chr1_3:60035922-60035941 | None:intergenic | 30.0% |
| ! | GTTTTCATTCTTGAAATTGC+AGG | + | chr1_3:60036051-60036070 | Msa0129970:intron | 30.0% |
| TTCACTTCTTTACACAACTT+TGG | + | chr1_3:60036096-60036115 | Msa0129970:CDS | 30.0% | |
| AACTTTGCTCAAAAGATCAT+TGG | - | chr1_3:60036188-60036207 | None:intergenic | 30.0% | |
| AATTCTAACACTGCTTGAAA+TGG | - | chr1_3:60036385-60036404 | None:intergenic | 30.0% | |
| TTGGGAGATGAAATTGAAAT+TGG | - | chr1_3:60036553-60036572 | None:intergenic | 30.0% | |
| TTGCTTAAAGATGAAGGATT+GGG | - | chr1_3:60036571-60036590 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAAAGATGA+AGG | - | chr1_3:60036577-60036596 | None:intergenic | 30.0% |
| CTTCATCTTTAAGCAAGAAA+AGG | + | chr1_3:60036575-60036594 | Msa0129970:CDS | 30.0% | |
| !!! | ACTTTTCTACACTTTGAAAC+AGG | - | chr1_3:60036631-60036650 | None:intergenic | 30.0% |
| ACACTACTTTATGAAAACGA+TGG | - | chr1_3:60036709-60036728 | None:intergenic | 30.0% | |
| !! | GTATTAGAAAAGGAGTGTTA+GGG | - | chr1_3:60036743-60036762 | None:intergenic | 30.0% |
| !! | AGTATTAGAAAAGGAGTGTT+AGG | - | chr1_3:60036744-60036763 | None:intergenic | 30.0% |
| TGTCCCATGAAATAAAGTTA+AGG | + | chr1_3:60035813-60035832 | Msa0129970:five_prime_UTR | 30.0% | |
| ! | CTTGCCTTAACTTTATTTCA+TGG | - | chr1_3:60035820-60035839 | None:intergenic | 30.0% |
| TATTGCAGTAGAGTATATCA+TGG | - | chr1_3:60035862-60035881 | None:intergenic | 30.0% | |
| TTGTATTGGATATTCAAGTG+AGG | - | chr1_3:60035890-60035909 | None:intergenic | 30.0% | |
| ATGGGAGAAGAATATTGTAT+TGG | - | chr1_3:60035904-60035923 | None:intergenic | 30.0% | |
| !!! | ATTTGGTTTTAGCAAGAGAT+GGG | - | chr1_3:60035922-60035941 | None:intergenic | 30.0% |
| ! | GTTTTCATTCTTGAAATTGC+AGG | + | chr1_3:60036051-60036070 | Msa0129970:intron | 30.0% |
| TTCACTTCTTTACACAACTT+TGG | + | chr1_3:60036096-60036115 | Msa0129970:CDS | 30.0% | |
| AACTTTGCTCAAAAGATCAT+TGG | - | chr1_3:60036188-60036207 | None:intergenic | 30.0% | |
| AATTCTAACACTGCTTGAAA+TGG | - | chr1_3:60036385-60036404 | None:intergenic | 30.0% | |
| TTGGGAGATGAAATTGAAAT+TGG | - | chr1_3:60036553-60036572 | None:intergenic | 30.0% | |
| TTGCTTAAAGATGAAGGATT+GGG | - | chr1_3:60036571-60036590 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAAAGATGA+AGG | - | chr1_3:60036577-60036596 | None:intergenic | 30.0% |
| CTTCATCTTTAAGCAAGAAA+AGG | + | chr1_3:60036575-60036594 | Msa0129970:CDS | 30.0% | |
| !!! | ACTTTTCTACACTTTGAAAC+AGG | - | chr1_3:60036631-60036650 | None:intergenic | 30.0% |
| ACACTACTTTATGAAAACGA+TGG | - | chr1_3:60036709-60036728 | None:intergenic | 30.0% | |
| !! | GTATTAGAAAAGGAGTGTTA+GGG | - | chr1_3:60036743-60036762 | None:intergenic | 30.0% |
| !! | AGTATTAGAAAAGGAGTGTT+AGG | - | chr1_3:60036744-60036763 | None:intergenic | 30.0% |
| !!! | CATTTGGTTTTAGCAAGAGA+TGG | - | chr1_3:60035923-60035942 | None:intergenic | 35.0% |
| CATCTCTTGCTAAAACCAAA+TGG | + | chr1_3:60035921-60035940 | Msa0129970:exon | 35.0% | |
| GGCTACATTCATATTCCATT+TGG | - | chr1_3:60035939-60035958 | None:intergenic | 35.0% | |
| TATAGAATTCCCAGGTAAGA+GGG | - | chr1_3:60035960-60035979 | None:intergenic | 35.0% | |
| TTATAGAATTCCCAGGTAAG+AGG | - | chr1_3:60035961-60035980 | None:intergenic | 35.0% | |
| ATCATGGTTATAGAATTCCC+AGG | - | chr1_3:60035968-60035987 | None:intergenic | 35.0% | |
| GGAATTCTATAACCATGATG+AGG | + | chr1_3:60035969-60035988 | Msa0129970:CDS | 35.0% | |
| GAAATTGCAGGGATTATTAG+AGG | + | chr1_3:60036063-60036082 | Msa0129970:intron | 35.0% | |
| AGCAACTATTGTGTCAACTA+AGG | + | chr1_3:60036126-60036145 | Msa0129970:CDS | 35.0% | |
| !!! | GTTTTTCAAGCATTAGGTTC+TGG | - | chr1_3:60036243-60036262 | None:intergenic | 35.0% |
| ! | TTGATGCTGTTGTTGTTGAT+GGG | - | chr1_3:60036272-60036291 | None:intergenic | 35.0% |
| ! | TTTGATGCTGTTGTTGTTGA+TGG | - | chr1_3:60036273-60036292 | None:intergenic | 35.0% |
| TCAACAACAACAGCATCAAA+TGG | + | chr1_3:60036273-60036292 | Msa0129970:CDS | 35.0% | |
| CATCAAATGGACAACAAATC+AGG | + | chr1_3:60036286-60036305 | Msa0129970:CDS | 35.0% | |
| TTCAAAAGTTTCCCTTTCTC+TGG | - | chr1_3:60036427-60036446 | None:intergenic | 35.0% | |
| ! | AGAGAAAGGGAAACTTTTGA+AGG | + | chr1_3:60036426-60036445 | Msa0129970:CDS | 35.0% |
| ! | ATCTCAATAGAGTTGAGTTG+TGG | - | chr1_3:60036526-60036545 | None:intergenic | 35.0% |
| GGAGATGAAATTGAAATTGG+AGG | - | chr1_3:60036550-60036569 | None:intergenic | 35.0% | |
| CTTGCTTAAAGATGAAGGAT+TGG | - | chr1_3:60036572-60036591 | None:intergenic | 35.0% | |
| ATGTGGTAGGAAATGATTTG+TGG | - | chr1_3:60036686-60036705 | None:intergenic | 35.0% | |
| CTTTATGAAAACGATGGATG+TGG | - | chr1_3:60036703-60036722 | None:intergenic | 35.0% | |
| ! | CACTCCTTTTCTAATACTCT+CGG | + | chr1_3:60036746-60036765 | Msa0129970:three_prime_UTR | 35.0% |
| !! | TTCACCGAGAGTATTAGAAA+AGG | - | chr1_3:60036753-60036772 | None:intergenic | 35.0% |
| !!! | CATTTGGTTTTAGCAAGAGA+TGG | - | chr1_3:60035923-60035942 | None:intergenic | 35.0% |
| CATCTCTTGCTAAAACCAAA+TGG | + | chr1_3:60035921-60035940 | Msa0129970:exon | 35.0% | |
| GGCTACATTCATATTCCATT+TGG | - | chr1_3:60035939-60035958 | None:intergenic | 35.0% | |
| TATAGAATTCCCAGGTAAGA+GGG | - | chr1_3:60035960-60035979 | None:intergenic | 35.0% | |
| TTATAGAATTCCCAGGTAAG+AGG | - | chr1_3:60035961-60035980 | None:intergenic | 35.0% | |
| ATCATGGTTATAGAATTCCC+AGG | - | chr1_3:60035968-60035987 | None:intergenic | 35.0% | |
| GGAATTCTATAACCATGATG+AGG | + | chr1_3:60035969-60035988 | Msa0129970:CDS | 35.0% | |
| GAAATTGCAGGGATTATTAG+AGG | + | chr1_3:60036063-60036082 | Msa0129970:intron | 35.0% | |
| AGCAACTATTGTGTCAACTA+AGG | + | chr1_3:60036126-60036145 | Msa0129970:CDS | 35.0% | |
| !!! | GTTTTTCAAGCATTAGGTTC+TGG | - | chr1_3:60036243-60036262 | None:intergenic | 35.0% |
| ! | TTGATGCTGTTGTTGTTGAT+GGG | - | chr1_3:60036272-60036291 | None:intergenic | 35.0% |
| ! | TTTGATGCTGTTGTTGTTGA+TGG | - | chr1_3:60036273-60036292 | None:intergenic | 35.0% |
| TCAACAACAACAGCATCAAA+TGG | + | chr1_3:60036273-60036292 | Msa0129970:CDS | 35.0% | |
| CATCAAATGGACAACAAATC+AGG | + | chr1_3:60036286-60036305 | Msa0129970:CDS | 35.0% | |
| TTCAAAAGTTTCCCTTTCTC+TGG | - | chr1_3:60036427-60036446 | None:intergenic | 35.0% | |
| ! | AGAGAAAGGGAAACTTTTGA+AGG | + | chr1_3:60036426-60036445 | Msa0129970:CDS | 35.0% |
| ! | ATCTCAATAGAGTTGAGTTG+TGG | - | chr1_3:60036526-60036545 | None:intergenic | 35.0% |
| GGAGATGAAATTGAAATTGG+AGG | - | chr1_3:60036550-60036569 | None:intergenic | 35.0% | |
| CTTGCTTAAAGATGAAGGAT+TGG | - | chr1_3:60036572-60036591 | None:intergenic | 35.0% | |
| ATGTGGTAGGAAATGATTTG+TGG | - | chr1_3:60036686-60036705 | None:intergenic | 35.0% | |
| CTTTATGAAAACGATGGATG+TGG | - | chr1_3:60036703-60036722 | None:intergenic | 35.0% | |
| ! | CACTCCTTTTCTAATACTCT+CGG | + | chr1_3:60036746-60036765 | Msa0129970:three_prime_UTR | 35.0% |
| !! | TTCACCGAGAGTATTAGAAA+AGG | - | chr1_3:60036753-60036772 | None:intergenic | 35.0% |
| GGCAAGAATATAAGGAGAGT+AGG | + | chr1_3:60035834-60035853 | Msa0129970:five_prime_UTR | 40.0% | |
| ! | TTGAAATGGTGTTGGAAGTG+TGG | - | chr1_3:60036371-60036390 | None:intergenic | 40.0% |
| AACACTGCTTGAAATGGTGT+TGG | - | chr1_3:60036379-60036398 | None:intergenic | 40.0% | |
| AAGAAACCATTGCCAGAGAA+AGG | + | chr1_3:60036412-60036431 | Msa0129970:CDS | 40.0% | |
| AGAAACCATTGCCAGAGAAA+GGG | + | chr1_3:60036413-60036432 | Msa0129970:CDS | 40.0% | |
| AGAAGAAGAGTCTGCAACAA+TGG | - | chr1_3:60036469-60036488 | None:intergenic | 40.0% | |
| ! | TCAATAGAGTTGAGTTGTGG+AGG | - | chr1_3:60036523-60036542 | None:intergenic | 40.0% |
| ! | AAATGATTTGTGGCAGTGGT+AGG | - | chr1_3:60036676-60036695 | None:intergenic | 40.0% |
| ! | TAGGAAATGATTTGTGGCAG+TGG | - | chr1_3:60036680-60036699 | None:intergenic | 40.0% |
| ATGAAAACGATGGATGTGGT+AGG | - | chr1_3:60036699-60036718 | None:intergenic | 40.0% | |
| GGCAAGAATATAAGGAGAGT+AGG | + | chr1_3:60035834-60035853 | Msa0129970:five_prime_UTR | 40.0% | |
| ! | TTGAAATGGTGTTGGAAGTG+TGG | - | chr1_3:60036371-60036390 | None:intergenic | 40.0% |
| AACACTGCTTGAAATGGTGT+TGG | - | chr1_3:60036379-60036398 | None:intergenic | 40.0% | |
| AAGAAACCATTGCCAGAGAA+AGG | + | chr1_3:60036412-60036431 | Msa0129970:CDS | 40.0% | |
| AGAAACCATTGCCAGAGAAA+GGG | + | chr1_3:60036413-60036432 | Msa0129970:CDS | 40.0% | |
| AGAAGAAGAGTCTGCAACAA+TGG | - | chr1_3:60036469-60036488 | None:intergenic | 40.0% | |
| ! | TCAATAGAGTTGAGTTGTGG+AGG | - | chr1_3:60036523-60036542 | None:intergenic | 40.0% |
| ! | AAATGATTTGTGGCAGTGGT+AGG | - | chr1_3:60036676-60036695 | None:intergenic | 40.0% |
| ! | TAGGAAATGATTTGTGGCAG+TGG | - | chr1_3:60036680-60036699 | None:intergenic | 40.0% |
| ATGAAAACGATGGATGTGGT+AGG | - | chr1_3:60036699-60036718 | None:intergenic | 40.0% | |
| ATGAATGTAGCCCTCTTACC+TGG | + | chr1_3:60035947-60035966 | Msa0129970:CDS | 45.0% | |
| TGAATGTAGCCCTCTTACCT+GGG | + | chr1_3:60035948-60035967 | Msa0129970:CDS | 45.0% | |
| AGTTTCCCTTTCTCTGGCAA+TGG | - | chr1_3:60036421-60036440 | None:intergenic | 45.0% | |
| !! | AGGGAAACTTTTGAAGGCAG+TGG | + | chr1_3:60036432-60036451 | Msa0129970:CDS | 45.0% |
| TTGCAGACTCTTCTTCTAGC+TGG | + | chr1_3:60036472-60036491 | Msa0129970:CDS | 45.0% | |
| ! | ATAGAGTTGAGTTGTGGAGG+TGG | - | chr1_3:60036520-60036539 | None:intergenic | 45.0% |
| AGGGATCTTGTACTCTCTTC+AGG | + | chr1_3:60036595-60036614 | Msa0129970:CDS | 45.0% | |
| !! | TGGTAGGTGTTATTGGTGAG+TGG | - | chr1_3:60036660-60036679 | None:intergenic | 45.0% |
| ATGAATGTAGCCCTCTTACC+TGG | + | chr1_3:60035947-60035966 | Msa0129970:CDS | 45.0% | |
| TGAATGTAGCCCTCTTACCT+GGG | + | chr1_3:60035948-60035967 | Msa0129970:CDS | 45.0% | |
| AGTTTCCCTTTCTCTGGCAA+TGG | - | chr1_3:60036421-60036440 | None:intergenic | 45.0% | |
| !! | AGGGAAACTTTTGAAGGCAG+TGG | + | chr1_3:60036432-60036451 | Msa0129970:CDS | 45.0% |
| TTGCAGACTCTTCTTCTAGC+TGG | + | chr1_3:60036472-60036491 | Msa0129970:CDS | 45.0% | |
| ! | ATAGAGTTGAGTTGTGGAGG+TGG | - | chr1_3:60036520-60036539 | None:intergenic | 45.0% |
| AGGGATCTTGTACTCTCTTC+AGG | + | chr1_3:60036595-60036614 | Msa0129970:CDS | 45.0% | |
| !! | TGGTAGGTGTTATTGGTGAG+TGG | - | chr1_3:60036660-60036679 | None:intergenic | 45.0% |
| TTGAAGGCAGTGGTAGAAGC+TGG | + | chr1_3:60036442-60036461 | Msa0129970:CDS | 50.0% | |
| TAGCTGGACCATTACCACAG+TGG | + | chr1_3:60036488-60036507 | Msa0129970:CDS | 50.0% | |
| GGATGTTGCCACTGTGGTAA+TGG | - | chr1_3:60036499-60036518 | None:intergenic | 50.0% | |
| ! | GTGGCAGTGGTAGGTGTTAT+TGG | - | chr1_3:60036667-60036686 | None:intergenic | 50.0% |
| TTGAAGGCAGTGGTAGAAGC+TGG | + | chr1_3:60036442-60036461 | Msa0129970:CDS | 50.0% | |
| TAGCTGGACCATTACCACAG+TGG | + | chr1_3:60036488-60036507 | Msa0129970:CDS | 50.0% | |
| GGATGTTGCCACTGTGGTAA+TGG | - | chr1_3:60036499-60036518 | None:intergenic | 50.0% | |
| ! | GTGGCAGTGGTAGGTGTTAT+TGG | - | chr1_3:60036667-60036686 | None:intergenic | 50.0% |
| GGAGGTGGATGTTGCCACTG+TGG | - | chr1_3:60036505-60036524 | None:intergenic | 60.0% | |
| GGAGGTGGATGTTGCCACTG+TGG | - | chr1_3:60036505-60036524 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60035767 | 60036778 | 60035767 | ID=Msa0129970;Name=Msa0129970 |
| chr1_3 | mRNA | 60035767 | 60036778 | 60035767 | ID=Msa0129970-mRNA-1;Parent=Msa0129970;Name=Msa0129970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=173|1|1|1|1|1|2|58|232 |
| chr1_3 | exon | 60035767 | 60035990 | 60035767 | ID=Msa0129970-mRNA-1:exon:19660;Parent=Msa0129970-mRNA-1 |
| chr1_3 | exon | 60036073 | 60036778 | 60036073 | ID=Msa0129970-mRNA-1:exon:19661;Parent=Msa0129970-mRNA-1 |
| chr1_3 | five_prime_UTR | 60035767 | 60035939 | 60035767 | ID=Msa0129970-mRNA-1:five_prime_utr;Parent=Msa0129970-mRNA-1 |
| chr1_3 | CDS | 60035940 | 60035990 | 60035940 | ID=Msa0129970-mRNA-1:cds;Parent=Msa0129970-mRNA-1 |
| chr1_3 | CDS | 60036073 | 60036720 | 60036073 | ID=Msa0129970-mRNA-1:cds;Parent=Msa0129970-mRNA-1 |
| chr1_3 | three_prime_UTR | 60036721 | 60036778 | 60036721 | ID=Msa0129970-mRNA-1:three_prime_utr;Parent=Msa0129970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
