Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034840 | XP_013469262.1 | 94.828 | 232 | 6 | 1 | 1 | 232 | 1 | 226 | 4.25e-156 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034840 | Msa0129970 | 0.903091 | 4.961322e-79 | -8.615850e-47 |
| Msa0034840 | Msa0853200 | -0.808042 | 3.762073e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034840 | MtrunA17_Chr1g0197151 | 94.828 | 232 | 6 | 1 | 1 | 232 | 1 | 226 | 3.91e-160 | 442 |
| Msa0034840 | MtrunA17_Chr2g0320271 | 51.613 | 186 | 77 | 4 | 6 | 180 | 7 | 190 | 2.03e-54 | 174 |
| Msa0034840 | MtrunA17_Chr4g0028161 | 47.150 | 193 | 83 | 5 | 8 | 182 | 10 | 201 | 2.00e-45 | 152 |
| Msa0034840 | MtrunA17_Chr4g0030841 | 33.168 | 202 | 80 | 7 | 22 | 180 | 16 | 205 | 1.16e-18 | 82.4 |
| Msa0034840 | MtrunA17_Chr2g0327801 | 31.841 | 201 | 84 | 5 | 21 | 180 | 16 | 204 | 2.69e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034840 | AT5G22930.1 | 44.589 | 231 | 98 | 8 | 8 | 211 | 9 | 236 | 6.60e-49 | 160 |
| Msa0034840 | AT2G28140.1 | 45.902 | 183 | 87 | 4 | 8 | 187 | 10 | 183 | 2.67e-41 | 140 |
| Msa0034840 | AT3G44940.1 | 36.538 | 260 | 108 | 6 | 1 | 213 | 1 | 250 | 4.29e-37 | 130 |
| Msa0034840 | AT2G28690.1 | 34.872 | 195 | 96 | 4 | 10 | 181 | 8 | 194 | 1.11e-22 | 92.8 |
| Msa0034840 | AT5G59760.1 | 34.826 | 201 | 103 | 5 | 20 | 200 | 15 | 207 | 2.71e-17 | 78.2 |
Find 59 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGAGATGAAATTGAAAT+TGG | 0.234904 | 1_1:-62825185 | None:intergenic |
| GAGGCAGTGGTAGGTGTTAT+TGG | 0.257973 | 1_1:-62825299 | None:intergenic |
| AGTATTAGAAAAGGAGTGTT+AGG | 0.268877 | 1_1:-62825376 | None:intergenic |
| AAAGTTAAGGCAAGAATATA+AGG | 0.294931 | 1_1:+62824461 | Msa0034840:five_prime_UTR |
| TTTGATGCTGTTGTTGTTGA+TGG | 0.306670 | 1_1:-62824905 | None:intergenic |
| GAAATTTCAGGGATTATTAG+AGG | 0.318481 | 1_1:+62824698 | Msa0034840:intron |
| CTTGCCTTAACTTTATTTCA+TGG | 0.355729 | 1_1:-62824452 | None:intergenic |
| TTCACTTCTTTACACAACTT+TGG | 0.356365 | 1_1:+62824731 | Msa0034840:CDS |
| AGGGATCTTGTACTCTCTTC+AGG | 0.363392 | 1_1:+62825230 | Msa0034840:CDS |
| TTCAAAAGTTTCCCTTTCTC+TGG | 0.371503 | 1_1:-62825059 | None:intergenic |
| GGCTACATTCATATTCCATT+TGG | 0.391789 | 1_1:-62824571 | None:intergenic |
| CTTCATCTTTAAGCAAGAAA+AGG | 0.394071 | 1_1:+62825210 | Msa0034840:CDS |
| CATCAAATGGACAACAAATC+AGG | 0.400642 | 1_1:+62824921 | Msa0034840:CDS |
| AACTTTGCTCAAAAGATCAT+TGG | 0.404110 | 1_1:-62824820 | None:intergenic |
| TTGCAGACTCTTCTTCTAGC+TGG | 0.413895 | 1_1:+62825107 | Msa0034840:CDS |
| TTGCTTAAAGATGAAGGATT+GGG | 0.434349 | 1_1:-62825203 | None:intergenic |
| ATGAATGTAGCCCTCTTACC+TGG | 0.434380 | 1_1:+62824582 | Msa0034840:CDS |
| GGAGATGAAATTGAAATTGG+AGG | 0.441663 | 1_1:-62825182 | None:intergenic |
| TTCATCTTTAAGCAAGAAAA+GGG | 0.445247 | 1_1:+62825211 | Msa0034840:CDS |
| CATCTCTTGCTAAAACCAAA+TGG | 0.447074 | 1_1:+62824556 | Msa0034840:exon |
| CTTGCTTAAAGATGAAGGAT+TGG | 0.451571 | 1_1:-62825204 | None:intergenic |
| AAGAAACCATTGCCAGAGAA+AGG | 0.460475 | 1_1:+62825047 | Msa0034840:CDS |
| ATGGGAGAAGAATATTGTAT+TGG | 0.466173 | 1_1:-62824536 | None:intergenic |
| TGTCCCATGAAATAAAGTTA+AGG | 0.470737 | 1_1:+62824448 | Msa0034840:five_prime_UTR |
| AATTCTAACACTGCTTGAAA+TGG | 0.475288 | 1_1:-62825017 | None:intergenic |
| AACACTGCTTGAAATGGTGT+TGG | 0.476228 | 1_1:-62825011 | None:intergenic |
| TTGCCTTAACTTTATTTCAT+GGG | 0.477575 | 1_1:-62824451 | None:intergenic |
| TTGATGCTGTTGTTGTTGAT+GGG | 0.484986 | 1_1:-62824904 | None:intergenic |
| TCAACAACAACAGCATCAAA+TGG | 0.490443 | 1_1:+62824908 | Msa0034840:CDS |
| AGTTTCCCTTTCTCTGGCAA+TGG | 0.491232 | 1_1:-62825053 | None:intergenic |
| TTGAAGGCAGTGGTAGAAGC+TGG | 0.493393 | 1_1:+62825077 | Msa0034840:CDS |
| AGCAACTATTGTGTCAACTA+AGG | 0.502056 | 1_1:+62824761 | Msa0034840:CDS |
| TTATAGAATTCCCAGGTAAG+AGG | 0.507710 | 1_1:-62824593 | None:intergenic |
| GGATGTTGCCACTGTGGTAA+TGG | 0.515091 | 1_1:-62825131 | None:intergenic |
| AGAAACCATTGCCAGAGAAA+GGG | 0.537284 | 1_1:+62825048 | Msa0034840:CDS |
| AGAAGAAGAGTCTGCAACAA+TGG | 0.538651 | 1_1:-62825101 | None:intergenic |
| TTCACCGAGAGTATTAGAAA+AGG | 0.545178 | 1_1:-62825385 | None:intergenic |
| AGAAAATAAATACCTCATCA+TGG | 0.545855 | 1_1:-62824616 | None:intergenic |
| GTATTAGAAAAGGAGTGTTA+GGG | 0.557044 | 1_1:-62825375 | None:intergenic |
| GGCAAGAATATAAGGAGAGT+AGG | 0.563297 | 1_1:+62824469 | Msa0034840:five_prime_UTR |
| TTGAAATGGTGTTGGAAGTG+TGG | 0.564992 | 1_1:-62825003 | None:intergenic |
| TATAGAATTCCCAGGTAAGA+GGG | 0.568195 | 1_1:-62824592 | None:intergenic |
| TAGGAAATGATTTGAGGCAG+TGG | 0.569316 | 1_1:-62825312 | None:intergenic |
| TGAATGTAGCCCTCTTACCT+GGG | 0.580887 | 1_1:+62824583 | Msa0034840:CDS |
| TGGTAGGTGTTATTGGTGAG+TGG | 0.584351 | 1_1:-62825292 | None:intergenic |
| ATGAAAACGATGGATGTGGT+AGG | 0.585445 | 1_1:-62825331 | None:intergenic |
| ATAGAGTTGAGTTGTGGAGG+TGG | 0.585714 | 1_1:-62825152 | None:intergenic |
| ATCTCAATAGAGTTGAGTTG+TGG | 0.586362 | 1_1:-62825158 | None:intergenic |
| TATTGCAGTAGAGTATATCA+TGG | 0.591374 | 1_1:-62824494 | None:intergenic |
| CTTTATGAAAACGATGGATG+TGG | 0.596103 | 1_1:-62825335 | None:intergenic |
| AAATGATTTGAGGCAGTGGT+AGG | 0.597450 | 1_1:-62825308 | None:intergenic |
| ACACTACTTTATGAAAACGA+TGG | 0.607888 | 1_1:-62825341 | None:intergenic |
| TCAATAGAGTTGAGTTGTGG+AGG | 0.609439 | 1_1:-62825155 | None:intergenic |
| ATGTGGTAGGAAATGATTTG+AGG | 0.621083 | 1_1:-62825318 | None:intergenic |
| TTGTATTGGATATTCAAGTG+AGG | 0.641045 | 1_1:-62824522 | None:intergenic |
| GGAATTCTATAACCATGATG+AGG | 0.654129 | 1_1:+62824604 | Msa0034840:CDS |
| ATCATGGTTATAGAATTCCC+AGG | 0.666715 | 1_1:-62824600 | None:intergenic |
| GGAGGTGGATGTTGCCACTG+TGG | 0.683928 | 1_1:-62825137 | None:intergenic |
| TAGCTGGACCATTACCACAG+TGG | 0.770830 | 1_1:+62825123 | Msa0034840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTGAATAAAAAATATA+GGG | - | chr1_1:62824651-62824670 | None:intergenic | 10.0% |
| !! | AATAAGTGAATAAAAAATAT+AGG | - | chr1_1:62824652-62824671 | None:intergenic | 10.0% |
| !! | ATAAGTGAATAAAAAATATA+GGG | - | chr1_1:62824651-62824670 | None:intergenic | 10.0% |
| !! | AATAAGTGAATAAAAAATAT+AGG | - | chr1_1:62824652-62824671 | None:intergenic | 10.0% |
| !!! | TTTTCATTCTTGAAATTTCA+GGG | + | chr1_1:62824687-62824706 | Msa0034840:intron | 20.0% |
| !!! | TTTTCATTCTTGAAATTTCA+GGG | + | chr1_1:62824687-62824706 | Msa0034840:intron | 20.0% |
| ! | GTTGAAAAATAAGACACAAA+AGG | - | chr1_1:62824424-62824443 | None:intergenic | 25.0% |
| !! | TTGCCTTAACTTTATTTCAT+GGG | - | chr1_1:62824454-62824473 | None:intergenic | 25.0% |
| ! | AAAGTTAAGGCAAGAATATA+AGG | + | chr1_1:62824461-62824480 | Msa0034840:five_prime_UTR | 25.0% |
| ! | AGAAAATAAATACCTCATCA+TGG | - | chr1_1:62824619-62824638 | None:intergenic | 25.0% |
| !!! | TGATGAGGTATTTATTTTCT+TGG | + | chr1_1:62824619-62824638 | Msa0034840:intron | 25.0% |
| !! | GTTTTCATTCTTGAAATTTC+AGG | + | chr1_1:62824686-62824705 | Msa0034840:intron | 25.0% |
| !!! | ATTCTTGTTTTTCAAGCATT+AGG | - | chr1_1:62824884-62824903 | None:intergenic | 25.0% |
| ! | TTCATCTTTAAGCAAGAAAA+GGG | + | chr1_1:62825211-62825230 | Msa0034840:CDS | 25.0% |
| ! | GTTGAAAAATAAGACACAAA+AGG | - | chr1_1:62824424-62824443 | None:intergenic | 25.0% |
| !! | TTGCCTTAACTTTATTTCAT+GGG | - | chr1_1:62824454-62824473 | None:intergenic | 25.0% |
| ! | AAAGTTAAGGCAAGAATATA+AGG | + | chr1_1:62824461-62824480 | Msa0034840:five_prime_UTR | 25.0% |
| ! | AGAAAATAAATACCTCATCA+TGG | - | chr1_1:62824619-62824638 | None:intergenic | 25.0% |
| !!! | TGATGAGGTATTTATTTTCT+TGG | + | chr1_1:62824619-62824638 | Msa0034840:intron | 25.0% |
| !! | GTTTTCATTCTTGAAATTTC+AGG | + | chr1_1:62824686-62824705 | Msa0034840:intron | 25.0% |
| !!! | ATTCTTGTTTTTCAAGCATT+AGG | - | chr1_1:62824884-62824903 | None:intergenic | 25.0% |
| ! | TTCATCTTTAAGCAAGAAAA+GGG | + | chr1_1:62825211-62825230 | Msa0034840:CDS | 25.0% |
| TGTCCCATGAAATAAAGTTA+AGG | + | chr1_1:62824448-62824467 | Msa0034840:five_prime_UTR | 30.0% | |
| ! | CTTGCCTTAACTTTATTTCA+TGG | - | chr1_1:62824455-62824474 | None:intergenic | 30.0% |
| TATTGCAGTAGAGTATATCA+TGG | - | chr1_1:62824497-62824516 | None:intergenic | 30.0% | |
| TTGTATTGGATATTCAAGTG+AGG | - | chr1_1:62824525-62824544 | None:intergenic | 30.0% | |
| ATGGGAGAAGAATATTGTAT+TGG | - | chr1_1:62824539-62824558 | None:intergenic | 30.0% | |
| !!! | ATTTGGTTTTAGCAAGAGAT+GGG | - | chr1_1:62824557-62824576 | None:intergenic | 30.0% |
| GAAATTTCAGGGATTATTAG+AGG | + | chr1_1:62824698-62824717 | Msa0034840:intron | 30.0% | |
| TTCACTTCTTTACACAACTT+TGG | + | chr1_1:62824731-62824750 | Msa0034840:CDS | 30.0% | |
| AACTTTGCTCAAAAGATCAT+TGG | - | chr1_1:62824823-62824842 | None:intergenic | 30.0% | |
| AATTCTAACACTGCTTGAAA+TGG | - | chr1_1:62825020-62825039 | None:intergenic | 30.0% | |
| TTGGGAGATGAAATTGAAAT+TGG | - | chr1_1:62825188-62825207 | None:intergenic | 30.0% | |
| TTGCTTAAAGATGAAGGATT+GGG | - | chr1_1:62825206-62825225 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAAAGATGA+AGG | - | chr1_1:62825212-62825231 | None:intergenic | 30.0% |
| CTTCATCTTTAAGCAAGAAA+AGG | + | chr1_1:62825210-62825229 | Msa0034840:CDS | 30.0% | |
| !!! | ACTTTTCTACACTTTGAAAC+AGG | - | chr1_1:62825266-62825285 | None:intergenic | 30.0% |
| ACACTACTTTATGAAAACGA+TGG | - | chr1_1:62825344-62825363 | None:intergenic | 30.0% | |
| !! | GTATTAGAAAAGGAGTGTTA+GGG | - | chr1_1:62825378-62825397 | None:intergenic | 30.0% |
| !! | AGTATTAGAAAAGGAGTGTT+AGG | - | chr1_1:62825379-62825398 | None:intergenic | 30.0% |
| TGTCCCATGAAATAAAGTTA+AGG | + | chr1_1:62824448-62824467 | Msa0034840:five_prime_UTR | 30.0% | |
| ! | CTTGCCTTAACTTTATTTCA+TGG | - | chr1_1:62824455-62824474 | None:intergenic | 30.0% |
| TATTGCAGTAGAGTATATCA+TGG | - | chr1_1:62824497-62824516 | None:intergenic | 30.0% | |
| TTGTATTGGATATTCAAGTG+AGG | - | chr1_1:62824525-62824544 | None:intergenic | 30.0% | |
| ATGGGAGAAGAATATTGTAT+TGG | - | chr1_1:62824539-62824558 | None:intergenic | 30.0% | |
| !!! | ATTTGGTTTTAGCAAGAGAT+GGG | - | chr1_1:62824557-62824576 | None:intergenic | 30.0% |
| GAAATTTCAGGGATTATTAG+AGG | + | chr1_1:62824698-62824717 | Msa0034840:intron | 30.0% | |
| TTCACTTCTTTACACAACTT+TGG | + | chr1_1:62824731-62824750 | Msa0034840:CDS | 30.0% | |
| AACTTTGCTCAAAAGATCAT+TGG | - | chr1_1:62824823-62824842 | None:intergenic | 30.0% | |
| AATTCTAACACTGCTTGAAA+TGG | - | chr1_1:62825020-62825039 | None:intergenic | 30.0% | |
| TTGGGAGATGAAATTGAAAT+TGG | - | chr1_1:62825188-62825207 | None:intergenic | 30.0% | |
| TTGCTTAAAGATGAAGGATT+GGG | - | chr1_1:62825206-62825225 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAAAGATGA+AGG | - | chr1_1:62825212-62825231 | None:intergenic | 30.0% |
| CTTCATCTTTAAGCAAGAAA+AGG | + | chr1_1:62825210-62825229 | Msa0034840:CDS | 30.0% | |
| !!! | ACTTTTCTACACTTTGAAAC+AGG | - | chr1_1:62825266-62825285 | None:intergenic | 30.0% |
| ACACTACTTTATGAAAACGA+TGG | - | chr1_1:62825344-62825363 | None:intergenic | 30.0% | |
| !! | GTATTAGAAAAGGAGTGTTA+GGG | - | chr1_1:62825378-62825397 | None:intergenic | 30.0% |
| !! | AGTATTAGAAAAGGAGTGTT+AGG | - | chr1_1:62825379-62825398 | None:intergenic | 30.0% |
| !!! | CATTTGGTTTTAGCAAGAGA+TGG | - | chr1_1:62824558-62824577 | None:intergenic | 35.0% |
| CATCTCTTGCTAAAACCAAA+TGG | + | chr1_1:62824556-62824575 | Msa0034840:exon | 35.0% | |
| GGCTACATTCATATTCCATT+TGG | - | chr1_1:62824574-62824593 | None:intergenic | 35.0% | |
| TATAGAATTCCCAGGTAAGA+GGG | - | chr1_1:62824595-62824614 | None:intergenic | 35.0% | |
| TTATAGAATTCCCAGGTAAG+AGG | - | chr1_1:62824596-62824615 | None:intergenic | 35.0% | |
| ATCATGGTTATAGAATTCCC+AGG | - | chr1_1:62824603-62824622 | None:intergenic | 35.0% | |
| GGAATTCTATAACCATGATG+AGG | + | chr1_1:62824604-62824623 | Msa0034840:CDS | 35.0% | |
| AGCAACTATTGTGTCAACTA+AGG | + | chr1_1:62824761-62824780 | Msa0034840:CDS | 35.0% | |
| !!! | GTTTTTCAAGCATTAGGTTC+TGG | - | chr1_1:62824878-62824897 | None:intergenic | 35.0% |
| ! | TTGATGCTGTTGTTGTTGAT+GGG | - | chr1_1:62824907-62824926 | None:intergenic | 35.0% |
| ! | TTTGATGCTGTTGTTGTTGA+TGG | - | chr1_1:62824908-62824927 | None:intergenic | 35.0% |
| TCAACAACAACAGCATCAAA+TGG | + | chr1_1:62824908-62824927 | Msa0034840:CDS | 35.0% | |
| CATCAAATGGACAACAAATC+AGG | + | chr1_1:62824921-62824940 | Msa0034840:CDS | 35.0% | |
| TTCAAAAGTTTCCCTTTCTC+TGG | - | chr1_1:62825062-62825081 | None:intergenic | 35.0% | |
| ! | AGAGAAAGGGAAACTTTTGA+AGG | + | chr1_1:62825061-62825080 | Msa0034840:CDS | 35.0% |
| ! | ATCTCAATAGAGTTGAGTTG+TGG | - | chr1_1:62825161-62825180 | None:intergenic | 35.0% |
| GGAGATGAAATTGAAATTGG+AGG | - | chr1_1:62825185-62825204 | None:intergenic | 35.0% | |
| CTTGCTTAAAGATGAAGGAT+TGG | - | chr1_1:62825207-62825226 | None:intergenic | 35.0% | |
| ATGTGGTAGGAAATGATTTG+AGG | - | chr1_1:62825321-62825340 | None:intergenic | 35.0% | |
| CTTTATGAAAACGATGGATG+TGG | - | chr1_1:62825338-62825357 | None:intergenic | 35.0% | |
| ! | CACTCCTTTTCTAATACTCT+CGG | + | chr1_1:62825381-62825400 | Msa0034840:three_prime_UTR | 35.0% |
| !! | TTCACCGAGAGTATTAGAAA+AGG | - | chr1_1:62825388-62825407 | None:intergenic | 35.0% |
| !!! | CATTTGGTTTTAGCAAGAGA+TGG | - | chr1_1:62824558-62824577 | None:intergenic | 35.0% |
| CATCTCTTGCTAAAACCAAA+TGG | + | chr1_1:62824556-62824575 | Msa0034840:exon | 35.0% | |
| GGCTACATTCATATTCCATT+TGG | - | chr1_1:62824574-62824593 | None:intergenic | 35.0% | |
| TATAGAATTCCCAGGTAAGA+GGG | - | chr1_1:62824595-62824614 | None:intergenic | 35.0% | |
| TTATAGAATTCCCAGGTAAG+AGG | - | chr1_1:62824596-62824615 | None:intergenic | 35.0% | |
| ATCATGGTTATAGAATTCCC+AGG | - | chr1_1:62824603-62824622 | None:intergenic | 35.0% | |
| GGAATTCTATAACCATGATG+AGG | + | chr1_1:62824604-62824623 | Msa0034840:CDS | 35.0% | |
| AGCAACTATTGTGTCAACTA+AGG | + | chr1_1:62824761-62824780 | Msa0034840:CDS | 35.0% | |
| !!! | GTTTTTCAAGCATTAGGTTC+TGG | - | chr1_1:62824878-62824897 | None:intergenic | 35.0% |
| ! | TTGATGCTGTTGTTGTTGAT+GGG | - | chr1_1:62824907-62824926 | None:intergenic | 35.0% |
| ! | TTTGATGCTGTTGTTGTTGA+TGG | - | chr1_1:62824908-62824927 | None:intergenic | 35.0% |
| TCAACAACAACAGCATCAAA+TGG | + | chr1_1:62824908-62824927 | Msa0034840:CDS | 35.0% | |
| CATCAAATGGACAACAAATC+AGG | + | chr1_1:62824921-62824940 | Msa0034840:CDS | 35.0% | |
| TTCAAAAGTTTCCCTTTCTC+TGG | - | chr1_1:62825062-62825081 | None:intergenic | 35.0% | |
| ! | AGAGAAAGGGAAACTTTTGA+AGG | + | chr1_1:62825061-62825080 | Msa0034840:CDS | 35.0% |
| ! | ATCTCAATAGAGTTGAGTTG+TGG | - | chr1_1:62825161-62825180 | None:intergenic | 35.0% |
| GGAGATGAAATTGAAATTGG+AGG | - | chr1_1:62825185-62825204 | None:intergenic | 35.0% | |
| CTTGCTTAAAGATGAAGGAT+TGG | - | chr1_1:62825207-62825226 | None:intergenic | 35.0% | |
| ATGTGGTAGGAAATGATTTG+AGG | - | chr1_1:62825321-62825340 | None:intergenic | 35.0% | |
| CTTTATGAAAACGATGGATG+TGG | - | chr1_1:62825338-62825357 | None:intergenic | 35.0% | |
| ! | CACTCCTTTTCTAATACTCT+CGG | + | chr1_1:62825381-62825400 | Msa0034840:three_prime_UTR | 35.0% |
| !! | TTCACCGAGAGTATTAGAAA+AGG | - | chr1_1:62825388-62825407 | None:intergenic | 35.0% |
| GGCAAGAATATAAGGAGAGT+AGG | + | chr1_1:62824469-62824488 | Msa0034840:five_prime_UTR | 40.0% | |
| ! | TTGAAATGGTGTTGGAAGTG+TGG | - | chr1_1:62825006-62825025 | None:intergenic | 40.0% |
| AACACTGCTTGAAATGGTGT+TGG | - | chr1_1:62825014-62825033 | None:intergenic | 40.0% | |
| AAGAAACCATTGCCAGAGAA+AGG | + | chr1_1:62825047-62825066 | Msa0034840:CDS | 40.0% | |
| AGAAACCATTGCCAGAGAAA+GGG | + | chr1_1:62825048-62825067 | Msa0034840:CDS | 40.0% | |
| AGAAGAAGAGTCTGCAACAA+TGG | - | chr1_1:62825104-62825123 | None:intergenic | 40.0% | |
| ! | TCAATAGAGTTGAGTTGTGG+AGG | - | chr1_1:62825158-62825177 | None:intergenic | 40.0% |
| ! | AAATGATTTGAGGCAGTGGT+AGG | - | chr1_1:62825311-62825330 | None:intergenic | 40.0% |
| ! | TAGGAAATGATTTGAGGCAG+TGG | - | chr1_1:62825315-62825334 | None:intergenic | 40.0% |
| ATGAAAACGATGGATGTGGT+AGG | - | chr1_1:62825334-62825353 | None:intergenic | 40.0% | |
| GGCAAGAATATAAGGAGAGT+AGG | + | chr1_1:62824469-62824488 | Msa0034840:five_prime_UTR | 40.0% | |
| ! | TTGAAATGGTGTTGGAAGTG+TGG | - | chr1_1:62825006-62825025 | None:intergenic | 40.0% |
| AACACTGCTTGAAATGGTGT+TGG | - | chr1_1:62825014-62825033 | None:intergenic | 40.0% | |
| AAGAAACCATTGCCAGAGAA+AGG | + | chr1_1:62825047-62825066 | Msa0034840:CDS | 40.0% | |
| AGAAACCATTGCCAGAGAAA+GGG | + | chr1_1:62825048-62825067 | Msa0034840:CDS | 40.0% | |
| AGAAGAAGAGTCTGCAACAA+TGG | - | chr1_1:62825104-62825123 | None:intergenic | 40.0% | |
| ! | TCAATAGAGTTGAGTTGTGG+AGG | - | chr1_1:62825158-62825177 | None:intergenic | 40.0% |
| ! | AAATGATTTGAGGCAGTGGT+AGG | - | chr1_1:62825311-62825330 | None:intergenic | 40.0% |
| ! | TAGGAAATGATTTGAGGCAG+TGG | - | chr1_1:62825315-62825334 | None:intergenic | 40.0% |
| ATGAAAACGATGGATGTGGT+AGG | - | chr1_1:62825334-62825353 | None:intergenic | 40.0% | |
| ATGAATGTAGCCCTCTTACC+TGG | + | chr1_1:62824582-62824601 | Msa0034840:CDS | 45.0% | |
| TGAATGTAGCCCTCTTACCT+GGG | + | chr1_1:62824583-62824602 | Msa0034840:CDS | 45.0% | |
| AGTTTCCCTTTCTCTGGCAA+TGG | - | chr1_1:62825056-62825075 | None:intergenic | 45.0% | |
| !! | AGGGAAACTTTTGAAGGCAG+TGG | + | chr1_1:62825067-62825086 | Msa0034840:CDS | 45.0% |
| TTGCAGACTCTTCTTCTAGC+TGG | + | chr1_1:62825107-62825126 | Msa0034840:CDS | 45.0% | |
| ! | ATAGAGTTGAGTTGTGGAGG+TGG | - | chr1_1:62825155-62825174 | None:intergenic | 45.0% |
| AGGGATCTTGTACTCTCTTC+AGG | + | chr1_1:62825230-62825249 | Msa0034840:CDS | 45.0% | |
| !! | TGGTAGGTGTTATTGGTGAG+TGG | - | chr1_1:62825295-62825314 | None:intergenic | 45.0% |
| ATGAATGTAGCCCTCTTACC+TGG | + | chr1_1:62824582-62824601 | Msa0034840:CDS | 45.0% | |
| TGAATGTAGCCCTCTTACCT+GGG | + | chr1_1:62824583-62824602 | Msa0034840:CDS | 45.0% | |
| AGTTTCCCTTTCTCTGGCAA+TGG | - | chr1_1:62825056-62825075 | None:intergenic | 45.0% | |
| !! | AGGGAAACTTTTGAAGGCAG+TGG | + | chr1_1:62825067-62825086 | Msa0034840:CDS | 45.0% |
| TTGCAGACTCTTCTTCTAGC+TGG | + | chr1_1:62825107-62825126 | Msa0034840:CDS | 45.0% | |
| ! | ATAGAGTTGAGTTGTGGAGG+TGG | - | chr1_1:62825155-62825174 | None:intergenic | 45.0% |
| AGGGATCTTGTACTCTCTTC+AGG | + | chr1_1:62825230-62825249 | Msa0034840:CDS | 45.0% | |
| !! | TGGTAGGTGTTATTGGTGAG+TGG | - | chr1_1:62825295-62825314 | None:intergenic | 45.0% |
| TTGAAGGCAGTGGTAGAAGC+TGG | + | chr1_1:62825077-62825096 | Msa0034840:CDS | 50.0% | |
| TAGCTGGACCATTACCACAG+TGG | + | chr1_1:62825123-62825142 | Msa0034840:CDS | 50.0% | |
| GGATGTTGCCACTGTGGTAA+TGG | - | chr1_1:62825134-62825153 | None:intergenic | 50.0% | |
| ! | GAGGCAGTGGTAGGTGTTAT+TGG | - | chr1_1:62825302-62825321 | None:intergenic | 50.0% |
| TTGAAGGCAGTGGTAGAAGC+TGG | + | chr1_1:62825077-62825096 | Msa0034840:CDS | 50.0% | |
| TAGCTGGACCATTACCACAG+TGG | + | chr1_1:62825123-62825142 | Msa0034840:CDS | 50.0% | |
| GGATGTTGCCACTGTGGTAA+TGG | - | chr1_1:62825134-62825153 | None:intergenic | 50.0% | |
| ! | GAGGCAGTGGTAGGTGTTAT+TGG | - | chr1_1:62825302-62825321 | None:intergenic | 50.0% |
| GGAGGTGGATGTTGCCACTG+TGG | - | chr1_1:62825140-62825159 | None:intergenic | 60.0% | |
| GGAGGTGGATGTTGCCACTG+TGG | - | chr1_1:62825140-62825159 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62824402 | 62825413 | 62824402 | ID=Msa0034840;Name=Msa0034840 |
| chr1_1 | mRNA | 62824402 | 62825413 | 62824402 | ID=Msa0034840-mRNA-1;Parent=Msa0034840;Name=Msa0034840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=173|1|1|1|1|1|2|58|232 |
| chr1_1 | exon | 62824402 | 62824625 | 62824402 | ID=Msa0034840-mRNA-1:exon:19899;Parent=Msa0034840-mRNA-1 |
| chr1_1 | exon | 62824708 | 62825413 | 62824708 | ID=Msa0034840-mRNA-1:exon:19900;Parent=Msa0034840-mRNA-1 |
| chr1_1 | five_prime_UTR | 62824402 | 62824574 | 62824402 | ID=Msa0034840-mRNA-1:five_prime_utr;Parent=Msa0034840-mRNA-1 |
| chr1_1 | CDS | 62824575 | 62824625 | 62824575 | ID=Msa0034840-mRNA-1:cds;Parent=Msa0034840-mRNA-1 |
| chr1_1 | CDS | 62824708 | 62825355 | 62824708 | ID=Msa0034840-mRNA-1:cds;Parent=Msa0034840-mRNA-1 |
| chr1_1 | three_prime_UTR | 62825356 | 62825413 | 62825356 | ID=Msa0034840-mRNA-1:three_prime_utr;Parent=Msa0034840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
