AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130280 MtrunA17_Chr1g0198351 86.280 379 18 3 2 369 1 356 0.0 660
Msa0130280 MtrunA17_Chr1g0198381 64.873 316 98 2 66 369 1 315 5.15e-154 436
Msa0130280 MtrunA17_Chr1g0198391 60.580 345 105 3 50 363 16 360 5.80e-150 427
Msa0130280 MtrunA17_Chr1g0198401 61.597 263 89 2 113 363 7 269 3.06e-117 341
Msa0130280 MtrunA17_Chr7g0266061 46.926 309 141 6 67 357 42 345 2.62e-99 298
Msa0130280 MtrunA17_Chr1g0178931 45.779 308 145 5 67 357 37 339 8.37e-97 291
Msa0130280 MtrunA17_Chr1g0178941 42.056 321 156 6 62 357 35 350 1.26e-83 258
Msa0130280 MtrunA17_Chr1g0198361 59.398 133 40 2 173 291 3 135 1.87e-44 151
Msa0130280 MtrunA17_Chr1g0178961 34.884 215 122 4 156 357 1 210 4.19e-40 141
Msa0130280 MtrunA17_Chr8g0344941 27.019 359 209 13 40 361 18 360 2.79e-30 119
Msa0130280 MtrunA17_Chr1g0178951 56.250 96 35 2 62 150 12 107 5.32e-30 111
Msa0130280 MtrunA17_Chr8g0349341 27.974 311 188 9 66 348 36 338 3.17e-28 113
Msa0130280 MtrunA17_Chr8g0344931 28.846 312 172 12 68 346 38 332 1.36e-27 111
Msa0130280 MtrunA17_Chr8g0349321 28.435 313 184 13 66 348 36 338 8.10e-27 109
Msa0130280 MtrunA17_Chr5g0432101 28.947 342 186 16 62 357 21 351 1.29e-26 108
Msa0130280 MtrunA17_Chr1g0182811 27.640 322 183 12 65 348 31 340 1.44e-26 108
Msa0130280 MtrunA17_Chr1g0198411 70.588 68 19 1 50 117 16 82 7.82e-26 99.8
Msa0130280 MtrunA17_Chr5g0420811 28.190 337 193 14 56 360 22 341 8.20e-25 103
Msa0130280 MtrunA17_Chr2g0301641 25.846 325 195 12 56 346 36 348 9.78e-25 104
Msa0130280 MtrunA17_Chr1g0189891 29.688 320 166 18 68 348 30 329 4.77e-24 101
Msa0130280 MtrunA17_Chr7g0275021 27.103 321 186 12 62 346 29 337 5.82e-24 101
Msa0130280 MtrunA17_Chr3g0099231 27.160 324 171 14 68 346 29 332 8.89e-24 101
Msa0130280 MtrunA17_Chr2g0294301 28.707 317 173 14 69 346 37 339 1.21e-23 100
Msa0130280 MtrunA17_Chr1g0189931 27.445 317 182 14 68 348 33 337 1.23e-23 100
Msa0130280 MtrunA17_Chr1g0156921 29.032 341 191 16 62 364 37 364 1.27e-23 100
Msa0130280 MtrunA17_Chr7g0275011 26.814 317 182 12 67 346 34 337 2.56e-23 99.8
Msa0130280 MtrunA17_Chr4g0017431 27.160 324 178 13 68 350 32 338 3.87e-23 99.4
Msa0130280 MtrunA17_Chr3g0099151 27.900 319 177 15 68 346 88 393 7.70e-23 99.0
Msa0130280 MtrunA17_Chr3g0085231 29.487 312 166 9 68 346 32 322 8.54e-23 98.2
Msa0130280 MtrunA17_Chr1g0189901 26.582 316 182 13 68 346 32 334 1.30e-22 97.8
Msa0130280 MtrunA17_Chr8g0374101 27.329 322 177 14 69 346 39 347 6.27e-22 95.9
Msa0130280 MtrunA17_Chr2g0283191 24.128 344 200 15 68 364 39 368 7.79e-22 95.5
Msa0130280 MtrunA17_Chr7g0275001 27.129 317 180 15 68 346 26 329 8.92e-22 95.1
Msa0130280 MtrunA17_Chr1g0156931 27.515 338 198 14 62 364 36 361 8.19e-21 92.4
Msa0130280 MtrunA17_Chr3g0131321 26.994 326 171 13 68 346 35 340 1.03e-20 92.4
Msa0130280 MtrunA17_Chr8g0371491 27.301 326 187 14 61 349 30 342 1.25e-20 92.0
Msa0130280 MtrunA17_Chr3g0099161 27.726 321 174 15 68 346 93 397 1.34e-20 92.4
Msa0130280 MtrunA17_Chr3g0077571 26.543 324 187 10 58 346 21 328 1.53e-20 91.7
Msa0130280 MtrunA17_Chr4g0068441 28.173 323 167 16 69 346 37 339 1.65e-20 91.7
Msa0130280 MtrunA17_Chr1g0156911 28.438 320 182 13 62 346 32 339 2.57e-20 90.9
Msa0130280 MtrunA17_Chr7g0215961 24.684 316 175 12 68 346 34 323 3.03e-20 90.9
Msa0130280 MtrunA17_Chr7g0226911 25.075 335 191 13 68 349 36 363 8.54e-20 89.7
Msa0130280 MtrunA17_Chr7g0274991 27.640 322 171 14 67 345 33 335 1.27e-19 89.4
Msa0130280 MtrunA17_Chr2g0320671 26.875 320 176 13 68 346 31 333 1.91e-19 88.6
Msa0130280 MtrunA17_Chr3g0142921 28.221 326 182 14 62 349 31 342 2.01e-19 88.6
Msa0130280 MtrunA17_Chr8g0349331 28.082 292 178 12 68 348 36 306 2.38e-19 87.8
Msa0130280 MtrunA17_Chr1g0156901 28.402 338 194 12 62 363 45 370 2.43e-19 88.6
Msa0130280 MtrunA17_Chr8g0352901 24.316 329 196 9 68 349 29 351 2.45e-19 88.6
Msa0130280 MtrunA17_Chr5g0434621 26.752 314 184 11 66 345 24 325 3.71e-19 87.8
Msa0130280 MtrunA17_Chr3g0085881 26.433 314 172 12 68 346 34 323 3.82e-19 87.4
Msa0130280 MtrunA17_Chr3g0077581 27.554 323 173 12 68 346 37 342 4.70e-19 87.4
Msa0130280 MtrunA17_Chr8g0370951 29.154 319 175 15 68 346 32 339 7.93e-19 87.0
Msa0130280 MtrunA17_Chr2g0285001 25.625 320 179 11 68 349 34 332 1.39e-18 86.3
Msa0130280 MtrunA17_Chr4g0060811 26.115 314 188 10 69 348 29 332 1.52e-18 85.9
Msa0130280 MtrunA17_Chr8g0380031 26.603 312 176 11 68 346 85 376 1.62e-18 86.3
Msa0130280 MtrunA17_Chr5g0438631 26.888 331 182 15 59 346 19 332 2.03e-18 85.5
Msa0130280 MtrunA17_Chr8g0349301 30.303 231 129 9 66 268 36 262 2.05e-18 85.1
Msa0130280 MtrunA17_Chr3g0092131 25.079 315 186 12 69 346 25 326 2.14e-18 85.5
Msa0130280 MtrunA17_Chr7g0254461 26.426 333 188 13 68 349 44 370 2.30e-18 85.9
Msa0130280 MtrunA17_Chr3g0105401 25.602 332 191 15 57 347 17 333 2.44e-18 85.1
Msa0130280 MtrunA17_Chr7g0226931 24.566 346 190 14 68 349 39 377 4.27e-18 85.1
Msa0130280 MtrunA17_Chr1g0160031 25.538 325 193 13 62 343 34 352 4.73e-18 84.7
Msa0130280 MtrunA17_Chr6g0457921 24.513 359 193 14 34 346 7 333 6.99e-18 84.0
Msa0130280 MtrunA17_Chr5g0438621 26.332 319 179 15 68 346 31 333 9.58e-18 83.6
Msa0130280 MtrunA17_Chr4g0057991 25.373 335 204 13 67 362 39 366 9.77e-18 84.0
Msa0130280 MtrunA17_Chr2g0285061 26.220 328 170 13 69 348 34 337 2.37e-17 82.4
Msa0130280 MtrunA17_Chr7g0275291 22.154 325 198 12 68 346 34 349 5.48e-17 81.6
Msa0130280 MtrunA17_Chr8g0341001 26.266 316 184 13 68 346 33 336 5.82e-17 81.3
Msa0130280 MtrunA17_Chr3g0086641 27.129 317 180 12 69 348 40 342 6.36e-17 81.3
Msa0130280 MtrunA17_Chr1g0157001 24.471 331 199 12 72 369 41 353 7.15e-17 81.3
Msa0130280 MtrunA17_Chr5g0438641 26.752 314 184 15 68 346 33 335 9.96e-17 80.5
Msa0130280 MtrunA17_Chr6g0450731 24.522 314 190 9 68 346 34 335 1.03e-16 80.5
Msa0130280 MtrunA17_Chr5g0396511 26.019 319 178 15 69 346 48 349 1.13e-16 80.5
Msa0130280 MtrunA17_Chr5g0405831 26.300 327 190 12 61 349 37 350 1.42e-16 80.1
Msa0130280 MtrunA17_Chr1g0159991 25.836 329 189 13 62 343 31 351 2.87e-16 79.3
Msa0130280 MtrunA17_Chr2g0284921 25.559 313 180 11 68 345 35 329 3.04e-16 79.3
Msa0130280 MtrunA17_Chr5g0405821 25.076 327 195 15 61 349 37 351 4.57e-16 78.6
Msa0130280 MtrunA17_Chr3g0142941 26.488 336 191 14 68 363 48 367 4.99e-16 78.6
Msa0130280 MtrunA17_Chr2g0284991 25.846 325 171 16 68 349 34 331 5.12e-16 78.6
Msa0130280 MtrunA17_Chr7g0226941 24.169 331 195 11 68 349 34 357 5.55e-16 78.6
Msa0130280 MtrunA17_Chr5g0437421 26.006 323 186 13 68 349 33 343 7.40e-16 78.2
Msa0130280 MtrunA17_Chr4g0008851 25.392 319 184 15 68 346 33 337 7.72e-16 78.2
Msa0130280 MtrunA17_Chr1g0160101 22.590 332 207 10 57 343 32 358 1.21e-15 77.8
Msa0130280 MtrunA17_Chr1g0159981 24.768 323 188 13 68 343 47 361 1.53e-15 77.4
Msa0130280 MtrunA17_Chr6g0450711 23.193 332 204 9 62 348 112 437 1.53e-15 77.8
Msa0130280 MtrunA17_Chr3g0120861 24.332 337 202 18 68 365 39 361 2.49e-15 76.6
Msa0130280 MtrunA17_Chr5g0444401 24.845 322 182 13 68 346 29 333 3.40e-15 76.3
Msa0130280 MtrunA17_Chr6g0450701 24.540 326 194 11 68 349 40 357 4.52e-15 75.9
Msa0130280 MtrunA17_Chr8g0370981 26.596 376 195 19 68 369 45 413 7.46e-15 75.5
Msa0130280 MtrunA17_Chr2g0283531 26.364 330 189 15 68 352 32 352 1.04e-14 74.7
Msa0130280 MtrunA17_Chr2g0284951 25.159 314 178 13 68 346 34 325 1.14e-14 74.7
Msa0130280 MtrunA17_Chr1g0160011 24.159 327 195 12 62 343 35 353 1.43e-14 74.3
Msa0130280 MtrunA17_Chr8g0371481 25.153 326 197 13 60 349 34 348 5.34e-14 72.4
Msa0130280 MtrunA17_Chr2g0330781 25.617 324 176 14 68 346 32 335 7.76e-14 72.0
Msa0130280 MtrunA17_Chr6g0450721 23.734 316 192 9 68 348 34 335 1.02e-13 71.6
Msa0130280 MtrunA17_Chr7g0271551 23.567 314 201 9 68 349 37 343 1.37e-13 71.2
Msa0130280 MtrunA17_Chr2g0283501 24.062 320 194 12 67 343 31 344 2.39e-12 67.8
Msa0130280 MtrunA17_Chr8g0339251 22.945 292 189 7 68 329 29 314 7.31e-12 65.9
Msa0130280 MtrunA17_Chr8g0371471 24.615 325 199 12 60 349 34 347 1.73e-11 65.1
Msa0130280 MtrunA17_Chr3g0104821 25.305 328 190 17 68 349 45 363 1.93e-11 65.1
Msa0130280 MtrunA17_Chr2g0301581 23.353 334 193 14 62 352 26 339 2.36e-11 64.7
Msa0130280 MtrunA17_Chr2g0301541 22.849 337 191 14 62 352 26 339 6.57e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130280 AT5G03610.1 43.804 347 176 6 31 360 8 352 2.44e-102 306
Msa0130280 AT3G09930.2 42.643 333 172 6 49 363 21 352 1.19e-91 279
Msa0130280 AT3G09930.1 42.643 333 172 6 49 363 21 352 1.19e-91 279
Msa0130280 AT2G36325.1 39.871 311 159 8 67 356 47 350 4.76e-67 216
Msa0130280 AT5G03600.1 33.229 319 183 9 67 366 14 321 4.66e-59 194
Msa0130280 AT5G03600.2 33.229 319 183 9 67 366 49 356 7.36e-59 194
Msa0130280 AT5G03590.3 33.566 286 146 9 86 362 7 257 3.95e-45 156
Msa0130280 AT5G03590.1 29.930 284 128 9 86 362 7 226 3.78e-35 129
Msa0130280 AT1G53920.1 26.347 334 206 12 47 349 30 354 4.28e-31 122
Msa0130280 AT5G41890.1 27.778 324 186 10 65 346 29 346 5.43e-29 115
Msa0130280 AT5G03590.2 43.671 158 79 6 49 198 17 172 1.19e-27 108
Msa0130280 AT1G06990.1 25.904 332 185 12 68 356 38 351 5.16e-27 110
Msa0130280 AT1G20120.1 26.361 349 171 13 54 349 69 384 3.58e-25 105
Msa0130280 AT2G03980.2 27.164 335 196 15 68 366 44 366 5.52e-25 104
Msa0130280 AT2G03980.3 27.164 335 196 15 68 366 44 366 5.52e-25 104
Msa0130280 AT2G03980.1 27.164 335 196 15 68 366 44 366 5.52e-25 104
Msa0130280 AT2G03980.4 27.164 335 196 15 68 366 44 366 5.52e-25 104
Msa0130280 AT1G71120.1 27.215 316 181 10 68 349 32 332 7.22e-25 104
Msa0130280 AT1G54030.1 24.688 320 206 10 68 368 53 356 1.34e-24 104
Msa0130280 AT2G40250.1 28.125 320 182 12 68 349 37 346 1.93e-24 103
Msa0130280 AT5G18430.1 28.037 321 173 16 68 346 29 333 3.37e-24 102
Msa0130280 AT1G71691.2 27.476 313 179 9 68 346 56 354 1.27e-23 101
Msa0130280 AT5G45960.1 27.761 335 180 18 68 357 48 365 1.71e-23 100
Msa0130280 AT1G75890.2 29.012 324 183 14 62 349 42 354 2.96e-23 100
Msa0130280 AT1G75890.3 29.141 326 180 15 62 349 71 383 3.30e-23 100
Msa0130280 AT1G20130.1 28.313 332 183 14 68 356 205 524 5.27e-23 100
Msa0130280 AT1G20130.2 28.313 332 183 14 68 356 185 504 6.12e-23 100
Msa0130280 AT1G54020.2 25.610 328 210 11 62 368 28 342 8.61e-23 98.6
Msa0130280 AT1G20135.1 28.213 319 173 13 68 352 30 326 1.12e-22 97.8
Msa0130280 AT5G33370.1 26.250 320 188 13 63 346 26 333 1.36e-22 98.2
Msa0130280 AT3G14210.1 27.134 328 200 12 65 365 34 349 1.63e-22 98.2
Msa0130280 AT4G28780.1 26.708 322 185 15 63 346 26 334 2.09e-22 97.4
Msa0130280 AT3G50400.1 27.019 322 179 14 69 346 36 345 2.22e-22 97.4
Msa0130280 AT1G54000.1 25.075 335 208 12 62 368 31 350 6.09e-22 96.7
Msa0130280 AT2G23540.1 27.500 360 198 17 34 346 15 358 9.86e-22 95.9
Msa0130280 AT5G42170.1 28.402 338 198 15 44 349 28 353 1.06e-21 95.5
Msa0130280 AT1G71691.3 28.968 252 149 6 67 288 55 306 2.20e-21 94.0
Msa0130280 AT1G75890.1 27.893 337 183 14 62 349 42 367 2.22e-21 94.7
Msa0130280 AT1G54010.1 24.773 331 214 11 62 368 31 350 3.52e-21 94.4
Msa0130280 AT4G10950.2 26.282 312 186 11 68 345 72 373 3.93e-21 94.4
Msa0130280 AT1G20132.1 26.332 319 193 12 61 346 55 364 6.21e-21 93.6
Msa0130280 AT2G04570.1 28.438 320 171 14 68 346 29 331 1.31e-20 92.0
Msa0130280 AT5G33370.2 27.481 262 156 10 63 290 26 287 1.98e-20 91.3
Msa0130280 AT5G45950.1 25.312 320 189 14 64 349 37 340 1.99e-20 91.7
Msa0130280 AT1G59406.1 28.402 338 185 18 50 349 15 333 2.19e-20 91.7
Msa0130280 AT1G59030.1 28.402 338 185 18 50 349 15 333 2.19e-20 91.7
Msa0130280 AT1G58725.1 28.402 338 185 18 50 349 15 333 2.19e-20 91.7
Msa0130280 AT1G54030.2 25.882 255 159 9 68 303 53 296 6.86e-20 89.7
Msa0130280 AT1G58430.1 25.552 317 186 10 68 346 36 340 2.32e-19 88.6
Msa0130280 AT2G19010.1 24.926 337 196 10 68 366 31 348 2.68e-19 88.6
Msa0130280 AT2G19060.1 26.101 318 169 11 69 346 32 323 3.07e-19 88.2
Msa0130280 AT2G19010.2 25.816 337 193 12 68 366 61 378 4.66e-19 88.2
Msa0130280 AT3G04290.1 24.451 319 191 12 65 346 27 332 4.88e-19 87.8
Msa0130280 AT4G10950.1 25.962 312 183 13 68 345 72 369 4.93e-19 88.2
Msa0130280 AT1G71250.1 26.087 322 176 11 68 346 42 344 5.34e-19 87.8
Msa0130280 AT5G45910.1 27.108 332 190 10 68 352 31 357 6.17e-19 87.8
Msa0130280 AT1G58520.3 28.750 320 166 16 68 349 31 326 1.30e-18 86.3
Msa0130280 AT1G58525.1 28.750 320 166 16 68 349 31 326 1.30e-18 86.3
Msa0130280 AT5G37690.1 26.006 323 189 12 62 348 22 330 3.69e-18 85.1
Msa0130280 AT3G16370.1 26.899 316 182 13 68 346 31 334 4.60e-18 84.7
Msa0130280 AT2G30310.1 24.773 331 177 12 68 349 35 342 7.74e-18 84.3
Msa0130280 AT3G14220.1 25.926 324 207 13 68 368 33 346 1.86e-17 83.2
Msa0130280 AT1G75920.2 26.019 319 178 14 68 349 30 327 2.28e-17 82.8
Msa0130280 AT2G42990.1 24.857 350 205 16 33 346 4 331 2.45e-17 82.8
Msa0130280 AT5G63170.1 26.087 322 178 14 64 349 25 322 2.89e-17 82.4
Msa0130280 AT2G31540.1 24.412 340 199 13 68 367 36 357 3.38e-17 82.4
Msa0130280 AT3G14225.2 22.424 330 216 12 63 358 33 356 7.16e-17 81.6
Msa0130280 AT5G40990.1 24.926 337 199 11 63 358 33 356 9.73e-17 81.3
Msa0130280 AT5G08460.1 24.611 321 186 12 68 346 50 356 9.81e-17 81.3
Msa0130280 AT2G04020.2 24.620 329 166 15 68 364 44 322 1.02e-16 80.5
Msa0130280 AT2G19050.1 24.918 305 187 10 69 346 33 322 1.31e-16 80.5
Msa0130280 AT5G15720.1 26.364 330 167 14 68 346 31 335 1.53e-16 80.5
Msa0130280 AT1G29660.1 27.187 320 170 13 69 345 34 333 3.69e-16 79.3
Msa0130280 AT2G04020.1 29.858 211 111 10 68 242 44 253 4.87e-16 77.8
Msa0130280 AT1G33811.1 26.829 328 171 14 68 346 35 342 7.91e-16 78.6
Msa0130280 AT2G24560.1 24.776 335 172 15 68 349 35 342 8.59e-16 78.2
Msa0130280 AT1G28570.1 26.524 328 180 16 71 349 38 353 9.14e-16 78.6
Msa0130280 AT1G28650.1 25.392 319 183 12 71 343 41 350 9.80e-16 78.2
Msa0130280 AT5G22810.1 24.242 330 175 16 68 346 35 340 1.03e-15 78.2
Msa0130280 AT3G27950.1 25.077 323 195 12 61 343 26 341 1.27e-15 77.8
Msa0130280 AT1G75910.1 26.316 323 179 14 68 352 29 330 1.37e-15 77.4
Msa0130280 AT5G15720.2 27.675 271 138 11 68 291 31 290 1.57e-15 77.0
Msa0130280 AT1G75900.1 26.730 318 184 14 68 349 44 348 1.65e-15 77.4
Msa0130280 AT1G67830.1 26.300 327 187 13 68 346 31 351 1.85e-15 77.4
Msa0130280 AT1G28640.1 24.688 320 184 12 71 343 39 348 3.63e-15 76.6
Msa0130280 AT1G28600.1 25.532 329 181 12 71 349 35 349 4.38e-15 76.3
Msa0130280 AT1G28580.1 24.847 326 188 13 71 349 41 356 6.07e-15 75.9
Msa0130280 AT1G75930.1 26.331 338 182 13 56 352 18 329 6.73e-15 75.5
Msa0130280 AT1G75880.2 27.019 322 191 13 62 349 47 358 6.81e-15 75.9
Msa0130280 AT1G75880.1 27.245 323 190 13 62 349 47 359 1.02e-14 75.1
Msa0130280 AT2G19050.2 27.615 239 145 8 69 280 33 270 1.11e-14 73.9
Msa0130280 AT4G26790.1 24.691 324 178 12 68 346 30 332 1.16e-14 74.7
Msa0130280 AT4G26790.2 24.691 324 178 12 68 346 30 332 1.16e-14 74.7
Msa0130280 AT5G37690.2 25.697 323 182 13 62 348 22 322 1.30e-14 74.7
Msa0130280 AT3G43550.1 28.947 266 147 12 62 291 25 284 1.45e-14 73.9
Msa0130280 AT2G27360.1 24.540 326 190 11 71 349 37 353 1.46e-14 74.7
Msa0130280 AT1G28670.1 25.155 322 193 12 71 349 39 355 2.20e-14 74.3
Msa0130280 AT4G01130.1 20.833 336 213 10 68 356 35 364 8.33e-14 72.4
Msa0130280 AT2G24560.2 25.091 275 140 10 68 291 35 294 2.47e-13 70.5
Msa0130280 AT4G30140.1 25.081 307 182 12 69 346 35 322 2.99e-13 70.5
Msa0130280 AT5G45670.1 24.375 320 182 13 69 346 31 332 3.79e-13 70.5
Msa0130280 AT5G14450.1 23.476 328 187 14 68 343 42 357 1.07e-12 69.3
Msa0130280 AT1G54790.3 27.103 321 178 16 71 343 36 348 1.22e-12 68.9
Msa0130280 AT1G31550.2 24.022 358 197 14 71 367 40 383 1.30e-12 68.9
Msa0130280 AT1G29670.2 25.868 317 181 14 68 346 101 401 1.45e-12 68.9
Msa0130280 AT1G29670.1 25.868 317 181 14 68 346 33 333 1.91e-12 68.2
Msa0130280 AT1G56670.1 22.601 323 212 8 68 358 41 357 1.98e-12 68.2
Msa0130280 AT3G48460.1 23.197 319 194 11 67 343 38 347 2.15e-12 68.2
Msa0130280 AT3G62280.1 23.795 332 195 14 56 346 25 339 2.21e-12 68.2
Msa0130280 AT1G23500.1 26.250 320 178 13 68 352 36 332 2.90e-12 67.8
Msa0130280 AT1G28660.1 25.545 321 192 13 71 349 39 354 3.51e-12 67.4
Msa0130280 AT3G53100.1 24.316 329 173 16 68 346 30 332 3.73e-12 67.4
Msa0130280 AT5G03810.1 24.149 323 184 15 67 346 30 334 5.44e-12 67.0
Msa0130280 AT1G31550.1 24.302 358 193 14 71 367 40 380 8.20e-12 66.6
Msa0130280 AT1G28610.2 22.892 332 186 11 71 349 35 349 8.95e-12 66.2
Msa0130280 AT1G28660.2 25.857 321 190 14 71 349 39 353 1.44e-11 65.9
Msa0130280 AT1G28590.1 23.565 331 186 12 71 349 40 355 4.50e-11 64.3
Msa0130280 AT4G18970.2 22.981 322 184 11 69 346 30 331 4.60e-11 64.3
Msa0130280 AT4G18970.1 22.910 323 183 11 69 346 30 331 5.77e-11 63.9
Msa0130280 AT1G28600.2 31.690 142 76 5 71 191 35 176 7.66e-11 62.0

Find 72 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGCATCTTTGCAATTA+TGG 0.159953 1_3:+60427699 None:intergenic
TCTTTAAAACTGTTTGTCTT+TGG 0.227374 1_3:-60429035 Msa0130280:CDS
CTTTAAAACTGTTTGTCTTT+GGG 0.259952 1_3:-60429034 Msa0130280:CDS
TGTTCAGTTGTTGCACAATT+TGG 0.268742 1_3:+60427776 None:intergenic
CTCCTTTGGCTTATTATAAC+AGG 0.281722 1_3:-60429185 Msa0130280:CDS
ACAGTTCACCCTTCTCAAAA+TGG 0.304025 1_3:-60426888 Msa0130280:CDS
GCAAATGTTGCAGGAGTAGA+AGG 0.327079 1_3:-60429095 Msa0130280:CDS
TTCTCAATGCATATGGTGTT+GGG 0.333523 1_3:+60428743 None:intergenic
GGATCATATAATCCTCCTTA+TGG 0.338044 1_3:-60428975 Msa0130280:CDS
AAATAATCACTCTTCTCCTT+TGG 0.361650 1_3:-60429199 Msa0130280:CDS
TCTATTTGTACACTCATGTT+TGG 0.364163 1_3:+60428646 None:intergenic
ATTGGTTTATTAGAGCCTAT+TGG 0.366126 1_3:-60427889 Msa0130280:CDS
TTTGGAGCAGCATTTGACTA+TGG 0.376206 1_3:+60427794 None:intergenic
CTGATTAATGCAAATGTTGC+AGG 0.380823 1_3:-60429104 Msa0130280:CDS
GGAATAAACAAAATAGCAAT+TGG 0.393328 1_3:-60427907 Msa0130280:CDS
ACTCAAGAATGGGAGCTTGC+AGG 0.394970 1_3:-60428521 Msa0130280:intron
TGAAGATTCAAGGTCATGTT+TGG 0.397860 1_3:+60428588 None:intergenic
GCTACATTTGTACTCAAGAA+TGG 0.400172 1_3:-60428532 Msa0130280:CDS
TGTGGAAGTGTTGATGATAA+AGG 0.408108 1_3:-60426963 Msa0130280:CDS
ATAAATACTACCAACGTAAT+CGG 0.408665 1_3:+60428899 None:intergenic
CAAGTGCAATTGAAGATTCA+AGG 0.415114 1_3:+60428578 None:intergenic
TCCATTGCAACCGTGTTGTA+AGG 0.424737 1_3:-60427006 Msa0130280:CDS
GAAGATCTCATGGTTATCAT+AGG 0.433924 1_3:+60427859 None:intergenic
AACCTTCCGGCTGGTTTACC+AGG 0.434798 1_3:+60428942 None:intergenic
GAACAAGCAAATGGGAAAAT+CGG 0.441025 1_3:-60427758 Msa0130280:CDS
GTGGAATTTCTCAATGCATA+TGG 0.446801 1_3:+60428736 None:intergenic
TTTCTCAATGCATATGGTGT+TGG 0.450567 1_3:+60428742 None:intergenic
CCAGGAAAACTGATTCCATA+AGG 0.452311 1_3:+60428960 None:intergenic
GCAACAACTGAACAAGCAAA+TGG 0.454466 1_3:-60427767 Msa0130280:CDS
AATTCCACAGAACTACAATA+TGG 0.459972 1_3:-60428721 Msa0130280:CDS
ACAGGTACACATTCTTTGCT+AGG 0.460442 1_3:-60429167 Msa0130280:CDS
CTTAAACGTATTCACGAGTT+GGG 0.468352 1_3:-60427928 Msa0130280:CDS
CCCTTACAACACGGTTGCAA+TGG 0.480734 1_3:+60427005 None:intergenic
TTTAAAACTGTTTGTCTTTG+GGG 0.481550 1_3:-60429033 Msa0130280:CDS
CTACATTTGTACTCAAGAAT+GGG 0.486179 1_3:-60428531 Msa0130280:CDS
TCTTAAACGTATTCACGAGT+TGG 0.489450 1_3:-60427929 Msa0130280:CDS
AACTTTGCACATGGAGGGAC+TGG 0.498125 1_3:-60428694 Msa0130280:CDS
ACAGGGAATTTCTTGAACTC+AGG 0.501576 1_3:-60428996 Msa0130280:CDS
ATCATAGGCACACATCCAAT+AGG 0.509761 1_3:+60427874 None:intergenic
CAACAACTGAACAAGCAAAT+GGG 0.511970 1_3:-60427766 Msa0130280:CDS
GTGTGATGAGTCTTCCAACT+TGG 0.516033 1_3:-60427827 Msa0130280:CDS
TAATTGCAAAGATGCAGAAA+AGG 0.523782 1_3:-60427696 Msa0130280:CDS
GAAATTCCCTGTGTCAACAT+AGG 0.528038 1_3:+60429007 None:intergenic
TCTCAATGCATATGGTGTTG+GGG 0.548431 1_3:+60428744 None:intergenic
TTCACCCTTCTCAAAATGGT+TGG 0.558076 1_3:-60426884 Msa0130280:CDS
AAGACCGTCACAGAACCTTC+CGG 0.564650 1_3:+60428929 None:intergenic
GTATGAACTTTGCACATGGA+GGG 0.571948 1_3:-60428699 Msa0130280:CDS
ATGATGCTGCAGTCTTCTCT+CGG 0.572996 1_3:-60426849 Msa0130280:CDS
CATACCATATTGTAGTTCTG+TGG 0.576053 1_3:+60428717 None:intergenic
AAGATGCAGAAAAGGCGAGC+TGG 0.578632 1_3:-60427688 Msa0130280:intron
CCATTGCAACCGTGTTGTAA+GGG 0.581191 1_3:-60427005 Msa0130280:CDS
GGGGACTCCTATGTTGACAC+AGG 0.583006 1_3:-60429014 Msa0130280:CDS
TCAATTGCACTTGTGAACGC+TGG 0.587409 1_3:-60428568 Msa0130280:CDS
GCAACCGTGTTGTAAGGGAG+AGG 0.587550 1_3:-60427000 Msa0130280:CDS
GCATCTTTGCAATTATGGAG+AGG 0.596501 1_3:+60427704 None:intergenic
CCGTCACAGAACCTTCCGGC+TGG 0.596955 1_3:+60428933 None:intergenic
AAAATCGGTCTTCATGACAC+TGG 0.603683 1_3:-60427743 Msa0130280:CDS
TCCCAAAAGAGTGAAAACTC+TGG 0.607394 1_3:+60426912 None:intergenic
CAAATGTTGCAGGAGTAGAA+GGG 0.616488 1_3:-60429094 Msa0130280:CDS
CTTGTCCTCACCGATTACGT+TGG 0.616912 1_3:-60428909 Msa0130280:intron
ATTGCACTTGTGAACGCTGG+CGG 0.620956 1_3:-60428565 Msa0130280:CDS
TTCCTGGTAAACCAGCCGGA+AGG 0.629014 1_3:-60428944 Msa0130280:CDS
TACCTGTTATAATAAGCCAA+AGG 0.634352 1_3:+60429183 None:intergenic
AAATGTTGCAGGAGTAGAAG+GGG 0.645335 1_3:-60429093 Msa0130280:CDS
GTGTTGATGATAAAGGAGCA+AGG 0.647737 1_3:-60426956 Msa0130280:CDS
GGGACTCCTATGTTGACACA+GGG 0.653629 1_3:-60429013 Msa0130280:CDS
GGTATGAACTTTGCACATGG+AGG 0.654144 1_3:-60428700 Msa0130280:CDS
GGAAAACTGATTCCATAAGG+AGG 0.664847 1_3:+60428963 None:intergenic
TATGGTATGAACTTTGCACA+TGG 0.677670 1_3:-60428703 Msa0130280:CDS
TACTACCAACGTAATCGGTG+AGG 0.687925 1_3:+60428904 None:intergenic
AAATCCTCTCCCTTACAACA+CGG 0.691341 1_3:+60426996 None:intergenic
CCAGCCGGAAGGTTCTGTGA+CGG 0.692000 1_3:-60428933 Msa0130280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATTTTTTCATTTTAT+TGG - chr1_3:60426905-60426924 Msa0130280:CDS 10.0%
!!! ATCTTTTTTTATTTTTCAAA+TGG + chr1_3:60427594-60427613 None:intergenic 10.0%
!! TTAAATATGAGATAAAATTA+AGG - chr1_3:60427653-60427672 Msa0130280:intron 10.0%
!!! TTTTATATGACATATTTATT+TGG - chr1_3:60427804-60427823 Msa0130280:CDS 10.0%
!!! TTCTTTCTTTTTTTTTTTTT+TGG + chr1_3:60428497-60428516 None:intergenic 10.0%
!!! TCATTTACATTATTTTTTTT+AGG + chr1_3:60428536-60428555 None:intergenic 10.0%
!!! TTTCAATTTTTTCATTTTAT+TGG - chr1_3:60426905-60426924 Msa0130280:CDS 10.0%
!!! ATCTTTTTTTATTTTTCAAA+TGG + chr1_3:60427594-60427613 None:intergenic 10.0%
!! TTAAATATGAGATAAAATTA+AGG - chr1_3:60427653-60427672 Msa0130280:intron 10.0%
!!! TTTTATATGACATATTTATT+TGG - chr1_3:60427804-60427823 Msa0130280:CDS 10.0%
!!! TTCTTTCTTTTTTTTTTTTT+TGG + chr1_3:60428497-60428516 None:intergenic 10.0%
!!! TCATTTACATTATTTTTTTT+AGG + chr1_3:60428536-60428555 None:intergenic 10.0%
!!! ATTTTTTCATTTTATTGGTT+TGG - chr1_3:60426910-60426929 Msa0130280:CDS 15.0%
!!! ACATTTTAATTAGTTCTTTA+TGG - chr1_3:60427865-60427884 Msa0130280:CDS 15.0%
!! TTCTTTATGGTATATTAATT+TGG - chr1_3:60427878-60427897 Msa0130280:CDS 15.0%
!! AAAAAGATAAATTAAATGAG+AGG - chr1_3:60428645-60428664 Msa0130280:CDS 15.0%
!!! ATTTTTTCATTTTATTGGTT+TGG - chr1_3:60426910-60426929 Msa0130280:CDS 15.0%
!!! ACATTTTAATTAGTTCTTTA+TGG - chr1_3:60427865-60427884 Msa0130280:CDS 15.0%
!! TTCTTTATGGTATATTAATT+TGG - chr1_3:60427878-60427897 Msa0130280:CDS 15.0%
!! AAAAAGATAAATTAAATGAG+AGG - chr1_3:60428645-60428664 Msa0130280:CDS 15.0%
!! ATATGAGATAAAATTAAGGA+AGG - chr1_3:60427657-60427676 Msa0130280:intron 20.0%
!!! GAAATCAAACTCAAATTTTT+CGG + chr1_3:60427983-60428002 None:intergenic 20.0%
!!! AAAATTTGAGTTTGATTTCT+AGG - chr1_3:60427984-60428003 Msa0130280:intron 20.0%
!!! ATGATAGACTTGATTTTTAT+TGG + chr1_3:60428580-60428599 None:intergenic 20.0%
!! GAAATATAAACTTCAATGTT+GGG + chr1_3:60428789-60428808 None:intergenic 20.0%
!! AGAAATATAAACTTCAATGT+TGG + chr1_3:60428790-60428809 None:intergenic 20.0%
!! TTCTAAACAATGGATAAAAA+AGG + chr1_3:60429005-60429024 None:intergenic 20.0%
!! ATATGAGATAAAATTAAGGA+AGG - chr1_3:60427657-60427676 Msa0130280:intron 20.0%
!!! GAAATCAAACTCAAATTTTT+CGG + chr1_3:60427983-60428002 None:intergenic 20.0%
!!! AAAATTTGAGTTTGATTTCT+AGG - chr1_3:60427984-60428003 Msa0130280:intron 20.0%
!!! ATGATAGACTTGATTTTTAT+TGG + chr1_3:60428580-60428599 None:intergenic 20.0%
!! GAAATATAAACTTCAATGTT+GGG + chr1_3:60428789-60428808 None:intergenic 20.0%
!! AGAAATATAAACTTCAATGT+TGG + chr1_3:60428790-60428809 None:intergenic 20.0%
!! TTCTAAACAATGGATAAAAA+AGG + chr1_3:60429005-60429024 None:intergenic 20.0%
!!! TCTTTAAAACTGTTTGTCTT+TGG - chr1_3:60427013-60427032 Msa0130280:CDS 25.0%
!!! CTTTAAAACTGTTTGTCTTT+GGG - chr1_3:60427014-60427033 Msa0130280:CDS 25.0%
!! TTTAAAACTGTTTGTCTTTG+GGG - chr1_3:60427015-60427034 Msa0130280:CDS 25.0%
! ATAAATACTACCAACGTAAT+CGG + chr1_3:60427152-60427171 None:intergenic 25.0%
!!! TGGGGATTTTATTTTCAAAA+AGG + chr1_3:60427289-60427308 None:intergenic 25.0%
!! ATTTTCAATACTTTGGTTGA+TGG - chr1_3:60427378-60427397 Msa0130280:intron 25.0%
! GGAATAAACAAAATAGCAAT+TGG - chr1_3:60428141-60428160 Msa0130280:intron 25.0%
!!! TTTTTTTTTTGGTACAAGAG+AGG + chr1_3:60428486-60428505 None:intergenic 25.0%
! AAAAAGATAAATTCAACGAG+AGG - chr1_3:60428681-60428700 Msa0130280:CDS 25.0%
! AAGTGAATTATGAAAACAAG+TGG + chr1_3:60428737-60428756 None:intergenic 25.0%
! ACAACAAAAAACGACAATAA+AGG - chr1_3:60428923-60428942 Msa0130280:CDS 25.0%
!!! TCTTTAAAACTGTTTGTCTT+TGG - chr1_3:60427013-60427032 Msa0130280:CDS 25.0%
!!! CTTTAAAACTGTTTGTCTTT+GGG - chr1_3:60427014-60427033 Msa0130280:CDS 25.0%
!! TTTAAAACTGTTTGTCTTTG+GGG - chr1_3:60427015-60427034 Msa0130280:CDS 25.0%
! ATAAATACTACCAACGTAAT+CGG + chr1_3:60427152-60427171 None:intergenic 25.0%
!!! TGGGGATTTTATTTTCAAAA+AGG + chr1_3:60427289-60427308 None:intergenic 25.0%
!! ATTTTCAATACTTTGGTTGA+TGG - chr1_3:60427378-60427397 Msa0130280:intron 25.0%
! GGAATAAACAAAATAGCAAT+TGG - chr1_3:60428141-60428160 Msa0130280:intron 25.0%
!!! TTTTTTTTTTGGTACAAGAG+AGG + chr1_3:60428486-60428505 None:intergenic 25.0%
! AAAAAGATAAATTCAACGAG+AGG - chr1_3:60428681-60428700 Msa0130280:CDS 25.0%
! AAGTGAATTATGAAAACAAG+TGG + chr1_3:60428737-60428756 None:intergenic 25.0%
! ACAACAAAAAACGACAATAA+AGG - chr1_3:60428923-60428942 Msa0130280:CDS 25.0%
AAATAATCACTCTTCTCCTT+TGG - chr1_3:60426849-60426868 Msa0130280:CDS 30.0%
TACCTGTTATAATAAGCCAA+AGG + chr1_3:60426868-60426887 None:intergenic 30.0%
AATTCCACAGAACTACAATA+TGG - chr1_3:60427327-60427346 Msa0130280:intron 30.0%
! GACTGGTATTTTCAATACTT+TGG - chr1_3:60427371-60427390 Msa0130280:intron 30.0%
TCTATTTGTACACTCATGTT+TGG + chr1_3:60427405-60427424 None:intergenic 30.0%
CTACATTTGTACTCAAGAAT+GGG - chr1_3:60427517-60427536 Msa0130280:intron 30.0%
!!! ACTTCGTAGTTTTATGATAG+AGG + chr1_3:60427909-60427928 None:intergenic 30.0%
AAATCAACTATGCATTCAAG+TGG - chr1_3:60427939-60427958 Msa0130280:CDS 30.0%
CAAGTACATTTGCTTTACAA+GGG + chr1_3:60428097-60428116 None:intergenic 30.0%
TCAAGTACATTTGCTTTACA+AGG + chr1_3:60428098-60428117 None:intergenic 30.0%
! ATTGGTTTATTAGAGCCTAT+TGG - chr1_3:60428159-60428178 Msa0130280:intron 30.0%
! CTTTTCATAAGAAGATCTCA+TGG + chr1_3:60428202-60428221 None:intergenic 30.0%
TTTCTGCATCTTTGCAATTA+TGG + chr1_3:60428352-60428371 None:intergenic 30.0%
TAATTGCAAAGATGCAGAAA+AGG - chr1_3:60428352-60428371 Msa0130280:intron 30.0%
! CTGTTGAGTTTTCTAAACAA+TGG + chr1_3:60429015-60429034 None:intergenic 30.0%
!! GAGGATTTGAAGTATTTTTG+TGG - chr1_3:60429067-60429086 Msa0130280:CDS 30.0%
AAATAATCACTCTTCTCCTT+TGG - chr1_3:60426849-60426868 Msa0130280:CDS 30.0%
TACCTGTTATAATAAGCCAA+AGG + chr1_3:60426868-60426887 None:intergenic 30.0%
AATTCCACAGAACTACAATA+TGG - chr1_3:60427327-60427346 Msa0130280:intron 30.0%
! GACTGGTATTTTCAATACTT+TGG - chr1_3:60427371-60427390 Msa0130280:intron 30.0%
TCTATTTGTACACTCATGTT+TGG + chr1_3:60427405-60427424 None:intergenic 30.0%
CTACATTTGTACTCAAGAAT+GGG - chr1_3:60427517-60427536 Msa0130280:intron 30.0%
!!! ACTTCGTAGTTTTATGATAG+AGG + chr1_3:60427909-60427928 None:intergenic 30.0%
AAATCAACTATGCATTCAAG+TGG - chr1_3:60427939-60427958 Msa0130280:CDS 30.0%
CAAGTACATTTGCTTTACAA+GGG + chr1_3:60428097-60428116 None:intergenic 30.0%
TCAAGTACATTTGCTTTACA+AGG + chr1_3:60428098-60428117 None:intergenic 30.0%
! ATTGGTTTATTAGAGCCTAT+TGG - chr1_3:60428159-60428178 Msa0130280:intron 30.0%
! CTTTTCATAAGAAGATCTCA+TGG + chr1_3:60428202-60428221 None:intergenic 30.0%
TTTCTGCATCTTTGCAATTA+TGG + chr1_3:60428352-60428371 None:intergenic 30.0%
TAATTGCAAAGATGCAGAAA+AGG - chr1_3:60428352-60428371 Msa0130280:intron 30.0%
! CTGTTGAGTTTTCTAAACAA+TGG + chr1_3:60429015-60429034 None:intergenic 30.0%
!! GAGGATTTGAAGTATTTTTG+TGG - chr1_3:60429067-60429086 Msa0130280:CDS 30.0%
! CTCCTTTGGCTTATTATAAC+AGG - chr1_3:60426863-60426882 Msa0130280:CDS 35.0%
CTGATTAATGCAAATGTTGC+AGG - chr1_3:60426944-60426963 Msa0130280:CDS 35.0%
GGATCATATAATCCTCCTTA+TGG - chr1_3:60427073-60427092 Msa0130280:intron 35.0%
CTACTAAATCATTTCGAACG+AGG + chr1_3:60427199-60427218 None:intergenic 35.0%
TTCTCAATGCATATGGTGTT+GGG + chr1_3:60427308-60427327 None:intergenic 35.0%
TTTCTCAATGCATATGGTGT+TGG + chr1_3:60427309-60427328 None:intergenic 35.0%
GTGGAATTTCTCAATGCATA+TGG + chr1_3:60427315-60427334 None:intergenic 35.0%
! CATACCATATTGTAGTTCTG+TGG + chr1_3:60427334-60427353 None:intergenic 35.0%
TATGGTATGAACTTTGCACA+TGG - chr1_3:60427345-60427364 Msa0130280:intron 35.0%
TGAAGATTCAAGGTCATGTT+TGG + chr1_3:60427463-60427482 None:intergenic 35.0%
CAAGTGCAATTGAAGATTCA+AGG + chr1_3:60427473-60427492 None:intergenic 35.0%
GCTACATTTGTACTCAAGAA+TGG - chr1_3:60427516-60427535 Msa0130280:intron 35.0%
!!! TCGTAGTTTTATGATAGAGG+TGG + chr1_3:60427906-60427925 None:intergenic 35.0%
!!! TCGCCTTTTGTTTTTCTTTG+TGG - chr1_3:60428046-60428065 Msa0130280:intron 35.0%
CTGCCACAAAGAAAAACAAA+AGG + chr1_3:60428052-60428071 None:intergenic 35.0%
!!! CTTTTGTTTTTCTTTGTGGC+AGG - chr1_3:60428050-60428069 Msa0130280:intron 35.0%
TCTTAAACGTATTCACGAGT+TGG - chr1_3:60428119-60428138 Msa0130280:intron 35.0%
CTTAAACGTATTCACGAGTT+GGG - chr1_3:60428120-60428139 Msa0130280:intron 35.0%
GAAGATCTCATGGTTATCAT+AGG + chr1_3:60428192-60428211 None:intergenic 35.0%
!!! ATGGTTTTGAGAAACCAAGT+TGG + chr1_3:60428238-60428257 None:intergenic 35.0%
TGTTCAGTTGTTGCACAATT+TGG + chr1_3:60428275-60428294 None:intergenic 35.0%
CAACAACTGAACAAGCAAAT+GGG - chr1_3:60428282-60428301 Msa0130280:intron 35.0%
GAACAAGCAAATGGGAAAAT+CGG - chr1_3:60428290-60428309 Msa0130280:intron 35.0%
AAAAAAGGAAGTCAGCATCA+AGG + chr1_3:60428990-60429009 None:intergenic 35.0%
!! TGTGGAAGTGTTGATGATAA+AGG - chr1_3:60429085-60429104 Msa0130280:CDS 35.0%
!! CATACCAACCATTTTGAGAA+GGG + chr1_3:60429171-60429190 None:intergenic 35.0%
!! TCATACCAACCATTTTGAGA+AGG + chr1_3:60429172-60429191 None:intergenic 35.0%
! CTCCTTTGGCTTATTATAAC+AGG - chr1_3:60426863-60426882 Msa0130280:CDS 35.0%
CTGATTAATGCAAATGTTGC+AGG - chr1_3:60426944-60426963 Msa0130280:CDS 35.0%
GGATCATATAATCCTCCTTA+TGG - chr1_3:60427073-60427092 Msa0130280:intron 35.0%
CTACTAAATCATTTCGAACG+AGG + chr1_3:60427199-60427218 None:intergenic 35.0%
TTCTCAATGCATATGGTGTT+GGG + chr1_3:60427308-60427327 None:intergenic 35.0%
TTTCTCAATGCATATGGTGT+TGG + chr1_3:60427309-60427328 None:intergenic 35.0%
GTGGAATTTCTCAATGCATA+TGG + chr1_3:60427315-60427334 None:intergenic 35.0%
! CATACCATATTGTAGTTCTG+TGG + chr1_3:60427334-60427353 None:intergenic 35.0%
TATGGTATGAACTTTGCACA+TGG - chr1_3:60427345-60427364 Msa0130280:intron 35.0%
TGAAGATTCAAGGTCATGTT+TGG + chr1_3:60427463-60427482 None:intergenic 35.0%
CAAGTGCAATTGAAGATTCA+AGG + chr1_3:60427473-60427492 None:intergenic 35.0%
GCTACATTTGTACTCAAGAA+TGG - chr1_3:60427516-60427535 Msa0130280:intron 35.0%
!!! TCGTAGTTTTATGATAGAGG+TGG + chr1_3:60427906-60427925 None:intergenic 35.0%
!!! TCGCCTTTTGTTTTTCTTTG+TGG - chr1_3:60428046-60428065 Msa0130280:intron 35.0%
CTGCCACAAAGAAAAACAAA+AGG + chr1_3:60428052-60428071 None:intergenic 35.0%
!!! CTTTTGTTTTTCTTTGTGGC+AGG - chr1_3:60428050-60428069 Msa0130280:intron 35.0%
TCTTAAACGTATTCACGAGT+TGG - chr1_3:60428119-60428138 Msa0130280:intron 35.0%
CTTAAACGTATTCACGAGTT+GGG - chr1_3:60428120-60428139 Msa0130280:intron 35.0%
GAAGATCTCATGGTTATCAT+AGG + chr1_3:60428192-60428211 None:intergenic 35.0%
!!! ATGGTTTTGAGAAACCAAGT+TGG + chr1_3:60428238-60428257 None:intergenic 35.0%
TGTTCAGTTGTTGCACAATT+TGG + chr1_3:60428275-60428294 None:intergenic 35.0%
CAACAACTGAACAAGCAAAT+GGG - chr1_3:60428282-60428301 Msa0130280:intron 35.0%
GAACAAGCAAATGGGAAAAT+CGG - chr1_3:60428290-60428309 Msa0130280:intron 35.0%
AAAAAAGGAAGTCAGCATCA+AGG + chr1_3:60428990-60429009 None:intergenic 35.0%
!! TGTGGAAGTGTTGATGATAA+AGG - chr1_3:60429085-60429104 Msa0130280:CDS 35.0%
!! CATACCAACCATTTTGAGAA+GGG + chr1_3:60429171-60429190 None:intergenic 35.0%
!! TCATACCAACCATTTTGAGA+AGG + chr1_3:60429172-60429191 None:intergenic 35.0%
ACAGGTACACATTCTTTGCT+AGG - chr1_3:60426881-60426900 Msa0130280:CDS 40.0%
CAAATGTTGCAGGAGTAGAA+GGG - chr1_3:60426954-60426973 Msa0130280:CDS 40.0%
AAATGTTGCAGGAGTAGAAG+GGG - chr1_3:60426955-60426974 Msa0130280:CDS 40.0%
GAAATTCCCTGTGTCAACAT+AGG + chr1_3:60427044-60427063 None:intergenic 40.0%
ACAGGGAATTTCTTGAACTC+AGG - chr1_3:60427052-60427071 Msa0130280:intron 40.0%
! GGAAAACTGATTCCATAAGG+AGG + chr1_3:60427088-60427107 None:intergenic 40.0%
! CCAGGAAAACTGATTCCATA+AGG + chr1_3:60427091-60427110 None:intergenic 40.0%
! CCTTATGGAATCAGTTTTCC+TGG - chr1_3:60427088-60427107 Msa0130280:intron 40.0%
! TCTCAATGCATATGGTGTTG+GGG + chr1_3:60427307-60427326 None:intergenic 40.0%
GTATGAACTTTGCACATGGA+GGG - chr1_3:60427349-60427368 Msa0130280:intron 40.0%
AAAGGCGATAATTGATCGAC+AGG + chr1_3:60428034-60428053 None:intergenic 40.0%
ATCATAGGCACACATCCAAT+AGG + chr1_3:60428177-60428196 None:intergenic 40.0%
! TTTGGAGCAGCATTTGACTA+TGG + chr1_3:60428257-60428276 None:intergenic 40.0%
GCAACAACTGAACAAGCAAA+TGG - chr1_3:60428281-60428300 Msa0130280:intron 40.0%
AAAATCGGTCTTCATGACAC+TGG - chr1_3:60428305-60428324 Msa0130280:intron 40.0%
GCATCTTTGCAATTATGGAG+AGG + chr1_3:60428347-60428366 None:intergenic 40.0%
AAATCCTCTCCCTTACAACA+CGG + chr1_3:60429055-60429074 None:intergenic 40.0%
!! GTGTTGATGATAAAGGAGCA+AGG - chr1_3:60429092-60429111 Msa0130280:CDS 40.0%
! AGCCAGAGTTTTCACTCTTT+TGG - chr1_3:60429134-60429153 Msa0130280:CDS 40.0%
! GCCAGAGTTTTCACTCTTTT+GGG - chr1_3:60429135-60429154 Msa0130280:CDS 40.0%
TCCCAAAAGAGTGAAAACTC+TGG + chr1_3:60429139-60429158 None:intergenic 40.0%
ACAGTTCACCCTTCTCAAAA+TGG - chr1_3:60429160-60429179 Msa0130280:CDS 40.0%
TTCACCCTTCTCAAAATGGT+TGG - chr1_3:60429164-60429183 Msa0130280:CDS 40.0%
ACAGGTACACATTCTTTGCT+AGG - chr1_3:60426881-60426900 Msa0130280:CDS 40.0%
CAAATGTTGCAGGAGTAGAA+GGG - chr1_3:60426954-60426973 Msa0130280:CDS 40.0%
AAATGTTGCAGGAGTAGAAG+GGG - chr1_3:60426955-60426974 Msa0130280:CDS 40.0%
GAAATTCCCTGTGTCAACAT+AGG + chr1_3:60427044-60427063 None:intergenic 40.0%
ACAGGGAATTTCTTGAACTC+AGG - chr1_3:60427052-60427071 Msa0130280:intron 40.0%
! GGAAAACTGATTCCATAAGG+AGG + chr1_3:60427088-60427107 None:intergenic 40.0%
! CCAGGAAAACTGATTCCATA+AGG + chr1_3:60427091-60427110 None:intergenic 40.0%
! CCTTATGGAATCAGTTTTCC+TGG - chr1_3:60427088-60427107 Msa0130280:intron 40.0%
! TCTCAATGCATATGGTGTTG+GGG + chr1_3:60427307-60427326 None:intergenic 40.0%
GTATGAACTTTGCACATGGA+GGG - chr1_3:60427349-60427368 Msa0130280:intron 40.0%
AAAGGCGATAATTGATCGAC+AGG + chr1_3:60428034-60428053 None:intergenic 40.0%
ATCATAGGCACACATCCAAT+AGG + chr1_3:60428177-60428196 None:intergenic 40.0%
! TTTGGAGCAGCATTTGACTA+TGG + chr1_3:60428257-60428276 None:intergenic 40.0%
GCAACAACTGAACAAGCAAA+TGG - chr1_3:60428281-60428300 Msa0130280:intron 40.0%
AAAATCGGTCTTCATGACAC+TGG - chr1_3:60428305-60428324 Msa0130280:intron 40.0%
GCATCTTTGCAATTATGGAG+AGG + chr1_3:60428347-60428366 None:intergenic 40.0%
AAATCCTCTCCCTTACAACA+CGG + chr1_3:60429055-60429074 None:intergenic 40.0%
!! GTGTTGATGATAAAGGAGCA+AGG - chr1_3:60429092-60429111 Msa0130280:CDS 40.0%
! AGCCAGAGTTTTCACTCTTT+TGG - chr1_3:60429134-60429153 Msa0130280:CDS 40.0%
! GCCAGAGTTTTCACTCTTTT+GGG - chr1_3:60429135-60429154 Msa0130280:CDS 40.0%
TCCCAAAAGAGTGAAAACTC+TGG + chr1_3:60429139-60429158 None:intergenic 40.0%
ACAGTTCACCCTTCTCAAAA+TGG - chr1_3:60429160-60429179 Msa0130280:CDS 40.0%
TTCACCCTTCTCAAAATGGT+TGG - chr1_3:60429164-60429183 Msa0130280:CDS 40.0%
GCAAATGTTGCAGGAGTAGA+AGG - chr1_3:60426953-60426972 Msa0130280:CDS 45.0%
GAAGGGGCAAAAAAGTCACA+TGG - chr1_3:60426971-60426990 Msa0130280:CDS 45.0%
! AGTTTTCCTGGTAAACCAGC+CGG - chr1_3:60427100-60427119 Msa0130280:intron 45.0%
TACTACCAACGTAATCGGTG+AGG + chr1_3:60427147-60427166 None:intergenic 45.0%
GGTATGAACTTTGCACATGG+AGG - chr1_3:60427348-60427367 Msa0130280:intron 45.0%
TCAATTGCACTTGTGAACGC+TGG - chr1_3:60427480-60427499 Msa0130280:intron 45.0%
GTGTGATGAGTCTTCCAACT+TGG - chr1_3:60428221-60428240 Msa0130280:intron 45.0%
TCCATTGCAACCGTGTTGTA+AGG - chr1_3:60429042-60429061 Msa0130280:CDS 45.0%
CCATTGCAACCGTGTTGTAA+GGG - chr1_3:60429043-60429062 Msa0130280:CDS 45.0%
ATGATGCTGCAGTCTTCTCT+CGG - chr1_3:60429199-60429218 Msa0130280:CDS 45.0%
GCAAATGTTGCAGGAGTAGA+AGG - chr1_3:60426953-60426972 Msa0130280:CDS 45.0%
GAAGGGGCAAAAAAGTCACA+TGG - chr1_3:60426971-60426990 Msa0130280:CDS 45.0%
! AGTTTTCCTGGTAAACCAGC+CGG - chr1_3:60427100-60427119 Msa0130280:intron 45.0%
TACTACCAACGTAATCGGTG+AGG + chr1_3:60427147-60427166 None:intergenic 45.0%
GGTATGAACTTTGCACATGG+AGG - chr1_3:60427348-60427367 Msa0130280:intron 45.0%
TCAATTGCACTTGTGAACGC+TGG - chr1_3:60427480-60427499 Msa0130280:intron 45.0%
GTGTGATGAGTCTTCCAACT+TGG - chr1_3:60428221-60428240 Msa0130280:intron 45.0%
TCCATTGCAACCGTGTTGTA+AGG - chr1_3:60429042-60429061 Msa0130280:CDS 45.0%
CCATTGCAACCGTGTTGTAA+GGG - chr1_3:60429043-60429062 Msa0130280:CDS 45.0%
ATGATGCTGCAGTCTTCTCT+CGG - chr1_3:60429199-60429218 Msa0130280:CDS 45.0%
GGGACTCCTATGTTGACACA+GGG - chr1_3:60427035-60427054 Msa0130280:intron 50.0%
AAGACCGTCACAGAACCTTC+CGG + chr1_3:60427122-60427141 None:intergenic 50.0%
! CTTGTCCTCACCGATTACGT+TGG - chr1_3:60427139-60427158 Msa0130280:intron 50.0%
AACTTTGCACATGGAGGGAC+TGG - chr1_3:60427354-60427373 Msa0130280:intron 50.0%
ATTGCACTTGTGAACGCTGG+CGG - chr1_3:60427483-60427502 Msa0130280:intron 50.0%
ACTCAAGAATGGGAGCTTGC+AGG - chr1_3:60427527-60427546 Msa0130280:intron 50.0%
AAGATGCAGAAAAGGCGAGC+TGG - chr1_3:60428360-60428379 Msa0130280:intron 50.0%
CCCTTACAACACGGTTGCAA+TGG + chr1_3:60429046-60429065 None:intergenic 50.0%
GGGACTCCTATGTTGACACA+GGG - chr1_3:60427035-60427054 Msa0130280:intron 50.0%
AAGACCGTCACAGAACCTTC+CGG + chr1_3:60427122-60427141 None:intergenic 50.0%
! CTTGTCCTCACCGATTACGT+TGG - chr1_3:60427139-60427158 Msa0130280:intron 50.0%
AACTTTGCACATGGAGGGAC+TGG - chr1_3:60427354-60427373 Msa0130280:intron 50.0%
ATTGCACTTGTGAACGCTGG+CGG - chr1_3:60427483-60427502 Msa0130280:intron 50.0%
ACTCAAGAATGGGAGCTTGC+AGG - chr1_3:60427527-60427546 Msa0130280:intron 50.0%
AAGATGCAGAAAAGGCGAGC+TGG - chr1_3:60428360-60428379 Msa0130280:intron 50.0%
CCCTTACAACACGGTTGCAA+TGG + chr1_3:60429046-60429065 None:intergenic 50.0%
GGGGACTCCTATGTTGACAC+AGG - chr1_3:60427034-60427053 Msa0130280:intron 55.0%
TTCCTGGTAAACCAGCCGGA+AGG - chr1_3:60427104-60427123 Msa0130280:intron 55.0%
!! AACCTTCCGGCTGGTTTACC+AGG + chr1_3:60427109-60427128 None:intergenic 55.0%
AATGGGAGCTTGCAGGTGAG+TGG - chr1_3:60427534-60427553 Msa0130280:intron 55.0%
GCAACCGTGTTGTAAGGGAG+AGG - chr1_3:60429048-60429067 Msa0130280:CDS 55.0%
GGGGACTCCTATGTTGACAC+AGG - chr1_3:60427034-60427053 Msa0130280:intron 55.0%
TTCCTGGTAAACCAGCCGGA+AGG - chr1_3:60427104-60427123 Msa0130280:intron 55.0%
!! AACCTTCCGGCTGGTTTACC+AGG + chr1_3:60427109-60427128 None:intergenic 55.0%
AATGGGAGCTTGCAGGTGAG+TGG - chr1_3:60427534-60427553 Msa0130280:intron 55.0%
GCAACCGTGTTGTAAGGGAG+AGG - chr1_3:60429048-60429067 Msa0130280:CDS 55.0%
CCAGCCGGAAGGTTCTGTGA+CGG - chr1_3:60427115-60427134 Msa0130280:intron 60.0%
CCAGCCGGAAGGTTCTGTGA+CGG - chr1_3:60427115-60427134 Msa0130280:intron 60.0%
CCGTCACAGAACCTTCCGGC+TGG + chr1_3:60427118-60427137 None:intergenic 65.0%
CCGTCACAGAACCTTCCGGC+TGG + chr1_3:60427118-60427137 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60426821 60429249 60426821 ID=Msa0130280;Name=Msa0130280
chr1_3 mRNA 60426821 60429249 60426821 ID=Msa0130280-mRNA-1;Parent=Msa0130280;Name=Msa0130280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|369
chr1_3 exon 60428910 60429249 60428910 ID=Msa0130280-mRNA-1:exon:19916;Parent=Msa0130280-mRNA-1
chr1_3 exon 60428522 60428787 60428522 ID=Msa0130280-mRNA-1:exon:19915;Parent=Msa0130280-mRNA-1
chr1_3 exon 60427689 60427965 60427689 ID=Msa0130280-mRNA-1:exon:19914;Parent=Msa0130280-mRNA-1
chr1_3 exon 60426821 60427047 60426821 ID=Msa0130280-mRNA-1:exon:19913;Parent=Msa0130280-mRNA-1
chr1_3 CDS 60428910 60429249 60428910 ID=Msa0130280-mRNA-1:cds;Parent=Msa0130280-mRNA-1
chr1_3 CDS 60428522 60428787 60428522 ID=Msa0130280-mRNA-1:cds;Parent=Msa0130280-mRNA-1
chr1_3 CDS 60427689 60427965 60427689 ID=Msa0130280-mRNA-1:cds;Parent=Msa0130280-mRNA-1
chr1_3 CDS 60426821 60427047 60426821 ID=Msa0130280-mRNA-1:cds;Parent=Msa0130280-mRNA-1
Gene Sequence

>Msa0130280

ATGATGATGAAGCAAACTCTATTAGTGAAAATAATCACTCTTCTCCTTTGGCTTATTATAACAGGTACACATTCTTTGCTAGGTTTTCAATTTTTTCATTTTATTGGTTTGGTAATTGTAGAACTGATTAATGCAAATGTTGCAGGAGTAGAAGGGGCAAAAAAGTCACATGGAACATACAACAATACAAACTCTTTAAAACTGTTTGTCTTTGGGGACTCCTATGTTGACACAGGGAATTTCTTGAACTCAGGATCATATAATCCTCCTTATGGAATCAGTTTTCCTGGTAAACCAGCCGGAAGGTTCTGTGACGGTCTTGTCCTCACCGATTACGTTGCTTCCTTTTTGAAAATAAAATCCCCAACACCATATGCATTGAGAAATTCCACAGAACTACAATATGGTATGAACTTTGCACATGGAGGGACTGGTATTTTCAATACTTTGGTTGATGGACCAAACATGAGTGTACAAATAGACTCATTTGAGAAGTTAATACAACAAAATGTCTATACCAAACATGACCTTGAATCTTCAATTGCACTTGTGAACGCTGGCGGTAATGATTATGCTACATTTGTACTCAAGAATGGGAGCTTGCAGCAAATGTACTTGAATCTTAAACGTATTCACGAGTTGGGAATAAACAAAATAGCAATTGGTTTATTAGAGCCTATTGGATGTGTGCCTATGATAACCATGAGATCTTCTTATGAAAAGTGTGATGAGTCTTCCAACTTGGTTTCTCAAAACCATAGTCAAATGCTGCTCCAAATTGTGCAACAACTGAACAAGCAAATGGGAAAATCGGTCTTCATGACACTGGATCTCTACAACTCTTTCCTCTCCATAATTGCAAAGATGCAGAAAAGGCGAGCTGAAAACTCAACAGTGATGAATCCATTGCAACCGTGTTGTAAGGGAGAGGATTTGAAGTATTTTTGTGGAAGTGTTGATGATAAAGGAGCAAGGAAATATAGTATATGTGAGAAGCCAGAGTTTTCACTCTTTTGGGACACAGTTCACCCTTCTCAAAATGGTTGGTATGAAGTTTATATGATGCTGCAGTCTTCTCTCGGTCAACTAATTCAAGAGAAAAACTTTTGA
Protein sequence

>Msa0130280

MMMKQTLLVKIITLLLWLIITGTHSLLGFQFFHFIGLVIVELINANVAGVEGAKKSHGTYNNTNSLKLFVFGDSYVDTGNFLNSGSYNPPYGISFPGKPAGRFCDGLVLTDYVASFLKIKSPTPYALRNSTELQYGMNFAHGGTGIFNTLVDGPNMSVQIDSFEKLIQQNVYTKHDLESSIALVNAGGNDYATFVLKNGSLQQMYLNLKRIHELGINKIAIGLLEPIGCVPMITMRSSYEKCDESSNLVSQNHSQMLLQIVQQLNKQMGKSVFMTLDLYNSFLSIIAKMQKRRAENSTVMNPLQPCCKGEDLKYFCGSVDDKGARKYSICEKPEFSLFWDTVHPSQNGWYEVYMMLQSSLGQLIQEKNF*