AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448950 MtrunA17_Chr3g0092131 98.834 343 4 0 1 343 22 364 0.0 697
Msa0448950 MtrunA17_Chr4g0060811 83.129 326 55 0 1 326 26 351 0.0 572
Msa0448950 MtrunA17_Chr5g0434621 47.619 315 163 2 1 315 24 336 5.21e-107 317
Msa0448950 MtrunA17_Chr2g0294301 44.969 318 166 7 4 316 37 350 2.85e-83 256
Msa0448950 MtrunA17_Chr4g0068441 43.887 319 170 6 3 316 36 350 1.22e-81 253
Msa0448950 MtrunA17_Chr4g0017431 39.241 316 186 5 4 316 33 345 3.83e-81 251
Msa0448950 MtrunA17_Chr8g0374101 39.752 322 183 8 4 316 39 358 3.49e-77 241
Msa0448950 MtrunA17_Chr2g0294311 41.590 327 174 6 4 317 34 356 8.66e-76 238
Msa0448950 MtrunA17_Chr5g0438621 40.625 320 180 8 5 319 33 347 2.34e-74 233
Msa0448950 MtrunA17_Chr3g0077571 40.129 309 180 4 4 312 32 335 5.24e-73 230
Msa0448950 MtrunA17_Chr7g0275021 36.957 322 197 5 4 323 36 353 7.61e-71 225
Msa0448950 MtrunA17_Chr5g0438631 38.750 320 187 7 5 319 31 346 1.58e-70 223
Msa0448950 MtrunA17_Chr3g0131321 35.016 317 199 5 3 314 35 349 2.30e-69 221
Msa0448950 MtrunA17_Chr1g0189931 37.143 315 194 4 4 316 34 346 7.41e-69 219
Msa0448950 MtrunA17_Chr1g0189901 36.624 314 195 4 4 315 33 344 1.21e-68 219
Msa0448950 MtrunA17_Chr7g0275011 36.392 316 197 4 4 317 36 349 2.38e-68 218
Msa0448950 MtrunA17_Chr3g0086641 37.061 313 188 6 4 312 40 347 1.90e-67 216
Msa0448950 MtrunA17_Chr7g0275001 36.593 317 196 4 4 317 27 341 3.93e-67 215
Msa0448950 MtrunA17_Chr8g0380041 38.730 315 180 8 4 312 33 340 5.82e-67 214
Msa0448950 MtrunA17_Chr1g0182811 37.342 316 192 6 4 315 35 348 2.29e-66 213
Msa0448950 MtrunA17_Chr3g0105401 36.562 320 192 7 5 318 31 345 2.53e-66 213
Msa0448950 MtrunA17_Chr4g0008851 36.593 317 195 5 4 316 34 348 1.47e-65 211
Msa0448950 MtrunA17_Chr2g0285061 37.261 314 187 8 4 312 34 342 2.12e-65 211
Msa0448950 MtrunA17_Chr7g0274991 36.508 315 196 4 4 316 35 347 2.93e-65 210
Msa0448950 MtrunA17_Chr3g0120861 36.593 317 193 7 5 317 41 353 1.12e-64 209
Msa0448950 MtrunA17_Chr3g0099151 34.365 323 193 7 4 315 89 403 7.87e-63 206
Msa0448950 MtrunA17_Chr3g0077581 40.694 317 175 10 4 312 38 349 6.74e-62 202
Msa0448950 MtrunA17_Chr1g0189891 37.421 318 184 8 4 316 31 338 1.37e-61 201
Msa0448950 MtrunA17_Chr3g0099161 32.915 319 202 4 4 315 94 407 3.22e-61 201
Msa0448950 MtrunA17_Chr6g0457921 36.792 318 192 6 4 316 31 344 3.99e-61 199
Msa0448950 MtrunA17_Chr5g0444401 31.761 318 209 3 4 316 30 344 1.73e-60 198
Msa0448950 MtrunA17_Chr8g0371491 34.169 319 202 7 4 318 38 352 3.40e-58 192
Msa0448950 MtrunA17_Chr3g0099231 30.696 316 212 3 4 315 30 342 3.66e-58 192
Msa0448950 MtrunA17_Chr5g0438641 33.333 321 200 9 5 318 35 348 8.21e-58 191
Msa0448950 MtrunA17_Chr1g0156921 32.915 319 208 5 4 319 44 359 2.68e-57 189
Msa0448950 MtrunA17_Chr5g0396511 33.016 315 205 4 4 315 48 359 4.19e-57 189
Msa0448950 MtrunA17_Chr2g0320671 35.220 318 196 8 4 316 32 344 1.44e-56 187
Msa0448950 MtrunA17_Chr1g0156911 32.407 324 212 6 4 324 39 358 1.06e-55 185
Msa0448950 MtrunA17_Chr7g0215961 33.968 315 191 6 4 316 35 334 7.76e-55 183
Msa0448950 MtrunA17_Chr8g0370951 32.915 319 205 5 4 315 33 349 1.12e-54 183
Msa0448950 MtrunA17_Chr5g0405821 33.866 313 199 7 6 313 47 356 1.86e-54 182
Msa0448950 MtrunA17_Chr1g0156931 32.808 317 205 6 6 319 45 356 3.83e-54 181
Msa0448950 MtrunA17_Chr8g0371481 32.812 320 202 7 6 318 45 358 4.40e-54 181
Msa0448950 MtrunA17_Chr8g0341001 35.625 320 189 10 6 316 36 347 7.23e-54 180
Msa0448950 MtrunA17_Chr2g0301641 34.472 322 193 7 4 315 45 358 1.00e-53 181
Msa0448950 MtrunA17_Chr2g0284921 37.342 316 177 11 4 312 36 337 2.99e-52 176
Msa0448950 MtrunA17_Chr3g0142921 32.288 319 210 5 4 319 38 353 3.98e-52 176
Msa0448950 MtrunA17_Chr5g0432101 34.139 331 202 9 4 323 35 360 9.07e-52 175
Msa0448950 MtrunA17_Chr3g0142941 32.288 319 208 7 6 320 51 365 1.01e-51 175
Msa0448950 MtrunA17_Chr4g0027521 36.420 324 187 10 4 316 29 344 2.07e-51 174
Msa0448950 MtrunA17_Chr1g0156891 31.776 321 209 6 4 319 45 360 3.06e-51 174
Msa0448950 MtrunA17_Chr3g0085881 37.299 311 178 9 4 312 35 330 3.72e-51 173
Msa0448950 MtrunA17_Chr8g0371471 31.230 317 210 7 6 318 45 357 6.39e-51 173
Msa0448950 MtrunA17_Chr1g0156901 31.348 319 212 6 4 319 52 366 1.48e-50 172
Msa0448950 MtrunA17_Chr2g0285001 36.593 317 181 10 4 313 35 338 1.24e-49 170
Msa0448950 MtrunA17_Chr8g0344941 32.817 323 196 8 4 315 43 355 1.90e-49 169
Msa0448950 MtrunA17_Chr5g0405831 31.861 317 207 8 5 316 46 358 3.28e-49 169
Msa0448950 MtrunA17_Chr2g0330781 34.700 317 196 9 6 316 35 346 6.97e-48 165
Msa0448950 MtrunA17_Chr2g0283191 31.975 319 196 9 4 307 40 352 1.51e-47 164
Msa0448950 MtrunA17_Chr8g0380031 35.647 317 177 11 4 312 86 383 1.71e-47 165
Msa0448950 MtrunA17_Chr2g0284951 37.143 315 175 10 4 312 35 332 2.04e-47 164
Msa0448950 MtrunA17_Chr2g0284991 36.137 321 188 11 4 319 35 343 2.96e-47 164
Msa0448950 MtrunA17_Chr3g0085231 33.546 313 188 8 4 312 33 329 4.40e-47 162
Msa0448950 MtrunA17_Chr5g0420811 34.069 317 186 8 4 314 35 334 6.02e-47 162
Msa0448950 MtrunA17_Chr4g0046151 31.307 329 203 10 4 316 38 359 9.87e-46 159
Msa0448950 MtrunA17_Chr8g0349341 30.503 318 199 7 4 312 39 343 6.69e-45 157
Msa0448950 MtrunA17_Chr5g0437421 31.310 313 200 7 4 306 34 341 2.10e-42 150
Msa0448950 MtrunA17_Chr6g0459921 33.478 230 144 5 94 317 119 345 4.37e-42 150
Msa0448950 MtrunA17_Chr8g0349321 29.874 318 201 7 4 312 39 343 5.52e-42 149
Msa0448950 MtrunA17_Chr8g0344931 32.268 313 196 7 4 312 39 339 1.52e-41 148
Msa0448950 MtrunA17_Chr1g0157001 30.275 327 202 8 7 321 41 353 2.65e-41 148
Msa0448950 MtrunA17_Chr6g0455661 34.389 221 136 5 103 317 239 456 5.43e-41 149
Msa0448950 MtrunA17_Chr6g0455661 51.042 96 34 4 4 95 33 119 5.14e-16 79.0
Msa0448950 MtrunA17_Chr2g0284941 36.709 316 164 12 4 315 35 318 1.12e-40 146
Msa0448950 MtrunA17_Chr8g0349301 31.802 283 175 7 4 282 39 307 1.54e-40 144
Msa0448950 MtrunA17_Chr8g0370981 29.132 357 200 9 4 312 46 397 1.98e-40 147
Msa0448950 MtrunA17_Chr8g0349331 30.503 318 169 7 4 312 37 311 1.83e-36 134
Msa0448950 MtrunA17_Chr8g0370961 28.384 229 151 5 94 316 6 227 3.21e-31 118
Msa0448950 MtrunA17_Chr4g0027571 32.710 214 138 4 107 316 3 214 4.24e-31 117
Msa0448950 MtrunA17_Chr7g0226911 26.479 355 197 10 4 316 37 369 4.78e-31 120
Msa0448950 MtrunA17_Chr8g0381581 28.169 355 195 12 4 319 42 375 2.26e-30 119
Msa0448950 MtrunA17_Chr7g0226931 27.654 358 200 11 4 316 40 383 3.55e-29 115
Msa0448950 MtrunA17_Chr1g0160101 28.070 342 202 14 4 315 44 371 4.97e-29 115
Msa0448950 MtrunA17_Chr7g0271551 29.499 339 190 12 2 316 36 349 7.95e-28 111
Msa0448950 MtrunA17_Chr7g0254461 27.168 346 205 12 4 316 45 376 9.29e-28 112
Msa0448950 MtrunA17_Chr6g0450731 27.576 330 202 9 6 317 37 347 2.82e-27 110
Msa0448950 MtrunA17_Chr2g0283481 28.955 335 206 14 4 316 49 373 3.88e-26 107
Msa0448950 MtrunA17_Chr7g0275291 27.941 340 204 12 4 316 35 360 4.73e-26 107
Msa0448950 MtrunA17_Chr1g0159971 28.488 344 197 12 4 315 49 375 1.58e-25 105
Msa0448950 MtrunA17_Chr1g0160031 28.146 302 181 10 42 316 74 366 2.29e-25 105
Msa0448950 MtrunA17_Chr7g0229581 37.857 140 84 2 180 316 8 147 8.00e-25 98.6
Msa0448950 MtrunA17_Chr3g0104821 27.647 340 207 13 4 317 46 372 8.95e-25 103
Msa0448950 MtrunA17_Chr1g0159981 28.383 303 179 9 42 315 81 374 1.95e-24 102
Msa0448950 MtrunA17_Chr7g0273101 27.326 344 204 13 4 316 31 359 5.12e-24 101
Msa0448950 MtrunA17_Chr2g0283501 27.381 336 213 11 4 317 33 359 6.43e-24 100
Msa0448950 MtrunA17_Chr5g0440501 25.000 220 153 3 103 312 10 227 7.50e-24 98.6
Msa0448950 MtrunA17_Chr6g0450721 26.444 329 205 10 6 317 37 345 9.99e-24 100
Msa0448950 MtrunA17_Chr4g0057991 26.471 340 205 12 4 317 41 361 1.14e-23 100
Msa0448950 MtrunA17_Chr8g0347751 27.536 345 203 16 4 316 38 367 2.77e-23 99.4
Msa0448950 MtrunA17_Chr7g0226941 27.405 343 201 12 6 316 37 363 3.07e-23 99.4
Msa0448950 MtrunA17_Chr1g0160011 27.907 301 181 11 42 315 75 366 9.23e-23 97.8
Msa0448950 MtrunA17_Chr1g0191461 27.746 346 203 14 4 318 33 362 9.55e-23 97.8
Msa0448950 MtrunA17_Chr2g0301581 28.060 335 195 13 4 317 36 345 2.23e-22 96.7
Msa0448950 MtrunA17_Chr1g0178931 26.316 323 210 10 4 318 39 341 2.65e-22 96.3
Msa0448950 MtrunA17_Chr2g0317271 26.647 334 203 12 4 317 32 343 1.07e-21 94.7
Msa0448950 MtrunA17_Chr1g0159991 25.959 339 212 10 4 315 38 364 1.09e-21 94.7
Msa0448950 MtrunA17_Chr2g0283531 29.641 334 205 13 4 316 33 357 1.19e-21 94.7
Msa0448950 MtrunA17_Chr6g0450701 27.083 336 205 13 6 316 43 363 1.22e-21 94.7
Msa0448950 MtrunA17_Chr6g0450711 26.822 343 199 11 6 317 126 447 1.38e-21 95.1
Msa0448950 MtrunA17_Chr0c01g0489581 26.647 334 203 12 4 317 32 343 1.46e-21 94.4
Msa0448950 MtrunA17_Chr0c01g0489571 26.647 334 203 12 4 317 32 343 1.83e-21 94.0
Msa0448950 MtrunA17_Chr2g0283511 27.893 337 205 14 7 317 36 360 2.50e-21 94.0
Msa0448950 MtrunA17_Chr2g0301541 27.463 335 197 13 4 317 36 345 1.02e-20 91.7
Msa0448950 MtrunA17_Chr3g0112821 27.171 357 214 13 4 340 32 362 1.05e-20 91.7
Msa0448950 MtrunA17_Chr2g0317261 26.807 332 205 12 4 317 32 343 1.88e-20 90.9
Msa0448950 MtrunA17_Chr7g0266061 25.077 323 209 12 4 315 44 344 2.00e-20 90.9
Msa0448950 MtrunA17_Chr1g0198351 25.397 315 194 10 4 304 45 332 2.39e-20 90.5
Msa0448950 MtrunA17_Chr3g0093031 27.348 362 212 14 4 340 32 367 6.30e-20 89.7
Msa0448950 MtrunA17_Chr4g0018571 38.571 140 83 2 180 316 31 170 1.02e-19 85.5
Msa0448950 MtrunA17_Chr1g0178941 26.140 329 211 10 4 318 42 352 1.28e-19 88.6
Msa0448950 MtrunA17_Chr1g0189911 30.469 128 87 2 191 316 1 128 5.65e-19 82.4
Msa0448950 MtrunA17_Chr8g0352901 25.806 341 208 11 6 316 32 357 1.21e-18 85.9
Msa0448950 MtrunA17_Chr1g0189921 48.421 95 47 2 4 98 33 125 4.62e-18 80.1
Msa0448950 MtrunA17_Chr1g0198381 25.625 320 194 13 1 304 1 292 8.59e-18 82.8
Msa0448950 MtrunA17_Chr3g0096551 26.420 352 205 14 4 317 31 366 1.69e-17 82.8
Msa0448950 MtrunA17_Chr8g0370971 46.875 96 46 3 4 95 40 134 6.19e-17 77.4
Msa0448950 MtrunA17_Chr6g0469521 34.351 131 83 2 170 297 22 152 9.22e-17 76.6
Msa0448950 MtrunA17_Chr7g0229591 36.076 158 96 5 4 159 32 186 1.14e-16 77.8
Msa0448950 MtrunA17_Chr2g0321991 44.186 86 47 1 4 89 35 119 2.52e-15 71.6
Msa0448950 MtrunA17_Chr7g0228261 41.538 65 38 0 253 317 11 75 8.75e-14 66.6
Msa0448950 MtrunA17_Chr2g0301571 24.912 285 174 10 53 317 37 301 9.50e-14 71.2
Msa0448950 MtrunA17_Chr2g0301551 24.912 285 174 10 53 317 37 301 2.15e-13 70.1
Msa0448950 MtrunA17_Chr3g0104831 25.725 276 169 12 67 317 27 291 2.96e-12 66.6
Msa0448950 MtrunA17_Chr2g0308211 32.812 128 82 2 54 179 20 145 3.90e-12 63.5
Msa0448950 MtrunA17_Chr2g0283541 25.692 253 159 9 88 316 36 283 6.49e-12 65.5
Msa0448950 MtrunA17_Chr8g0339251 24.727 275 182 8 6 271 32 290 8.52e-12 65.5
Msa0448950 MtrunA17_Chr3g0112691 24.058 345 208 13 4 317 32 353 1.74e-11 64.7
Msa0448950 MtrunA17_Chr2g0301591 27.273 275 156 10 4 261 36 283 2.10e-11 63.9
Msa0448950 MtrunA17_Chr4g0027581 28.571 147 80 5 195 316 41 187 4.16e-11 62.0
Msa0448950 MtrunA17_Chr6g0469511 37.719 114 67 4 4 116 32 142 9.97e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448950 AT1G74460.1 76.232 345 80 1 1 343 22 366 0.0 558
Msa0448950 AT5G37690.1 46.984 315 165 2 1 315 26 338 3.43e-107 318
Msa0448950 AT5G37690.2 45.079 315 163 3 1 315 26 330 3.22e-99 297
Msa0448950 AT3G50400.1 41.796 323 176 9 4 316 36 356 2.32e-79 247
Msa0448950 AT5G15720.1 41.615 322 176 7 4 318 32 348 2.75e-78 244
Msa0448950 AT2G23540.1 40.683 322 180 8 4 316 50 369 2.85e-77 242
Msa0448950 AT5G08460.1 40.506 316 180 5 3 312 50 363 9.80e-77 241
Msa0448950 AT1G71250.1 39.423 312 183 5 4 312 43 351 1.01e-76 240
Msa0448950 AT1G71691.2 40.064 312 181 5 4 314 57 363 1.04e-72 230
Msa0448950 AT5G41890.1 37.725 334 184 11 1 316 30 357 3.36e-70 224
Msa0448950 AT4G28780.1 37.460 315 193 3 4 316 33 345 3.35e-68 218
Msa0448950 AT1G33811.1 39.688 320 176 10 4 312 36 349 2.57e-67 216
Msa0448950 AT1G29660.1 40.127 314 177 8 4 312 34 341 3.38e-67 216
Msa0448950 AT5G45670.1 36.991 319 193 6 4 318 31 345 1.98e-65 211
Msa0448950 AT5G18430.1 35.962 317 197 5 4 316 30 344 2.91e-65 211
Msa0448950 AT5G33370.1 34.286 315 203 4 4 316 32 344 1.40e-64 209
Msa0448950 AT1G29670.1 38.339 313 183 8 4 312 34 340 3.49e-64 207
Msa0448950 AT3G04290.1 35.873 315 198 4 4 316 31 343 7.35e-64 207
Msa0448950 AT4G18970.1 35.423 319 198 6 4 318 30 344 7.96e-64 207
Msa0448950 AT1G29670.2 38.339 313 183 8 4 312 102 408 4.58e-63 207
Msa0448950 AT4G18970.2 35.737 319 197 6 4 318 30 344 9.05e-63 206
Msa0448950 AT5G15720.3 38.603 272 158 5 54 318 48 317 6.03e-61 198
Msa0448950 AT4G10950.2 33.441 311 203 3 4 312 73 381 7.89e-61 200
Msa0448950 AT2G04570.1 35.127 316 197 7 5 316 31 342 1.14e-60 198
Msa0448950 AT5G42170.1 34.675 323 200 7 6 324 54 369 1.89e-60 198
Msa0448950 AT4G26790.1 35.535 318 195 8 5 317 32 344 5.64e-60 196
Msa0448950 AT4G26790.2 35.535 318 195 8 5 317 32 344 5.64e-60 196
Msa0448950 AT1G71691.1 37.597 258 157 3 58 314 8 262 1.39e-58 191
Msa0448950 AT2G42990.1 34.169 319 202 7 5 319 31 345 5.52e-58 191
Msa0448950 AT4G10950.1 33.441 311 199 4 4 312 73 377 1.66e-57 191
Msa0448950 AT1G75890.2 33.542 319 205 6 5 319 50 365 2.24e-57 190
Msa0448950 AT1G75890.3 33.542 319 205 6 5 319 79 394 3.91e-57 190
Msa0448950 AT5G15720.2 41.353 266 144 7 4 262 32 292 7.15e-57 187
Msa0448950 AT1G75890.1 32.931 331 204 8 5 319 50 378 1.40e-56 188
Msa0448950 AT3G14820.1 36.250 320 190 10 5 319 35 345 2.07e-55 184
Msa0448950 AT5G55050.1 34.472 322 198 7 4 316 41 358 3.99e-55 184
Msa0448950 AT1G20120.1 33.125 320 202 8 4 317 80 393 6.01e-55 185
Msa0448950 AT5G45950.1 33.651 315 199 7 4 316 42 348 1.72e-54 182
Msa0448950 AT1G58430.1 33.750 320 204 6 4 318 37 353 4.03e-54 181
Msa0448950 AT2G30220.1 33.546 313 192 7 4 307 35 340 1.38e-53 180
Msa0448950 AT1G59406.1 33.022 321 200 9 5 319 33 344 4.37e-53 179
Msa0448950 AT1G59030.1 33.022 321 200 9 5 319 33 344 4.37e-53 179
Msa0448950 AT1G58725.1 33.022 321 200 9 5 319 33 344 4.37e-53 179
Msa0448950 AT3G16370.1 34.700 317 196 9 6 316 34 345 4.18e-52 176
Msa0448950 AT1G71691.3 40.000 260 150 5 4 262 57 311 4.68e-52 175
Msa0448950 AT1G75880.1 31.975 319 210 6 5 319 55 370 2.14e-51 175
Msa0448950 AT2G31540.1 32.492 317 206 6 4 315 37 350 1.80e-50 172
Msa0448950 AT2G30310.1 31.310 313 207 6 4 311 36 345 2.60e-50 172
Msa0448950 AT1G75900.1 31.761 318 208 7 6 319 47 359 6.35e-50 171
Msa0448950 AT2G24560.1 32.573 307 199 6 4 305 36 339 8.70e-50 170
Msa0448950 AT1G75880.2 31.975 319 209 7 5 319 55 369 1.04e-49 171
Msa0448950 AT4G16230.1 43.439 221 116 6 3 218 31 247 6.73e-49 165
Msa0448950 AT5G22810.1 33.642 324 196 10 4 316 36 351 8.12e-49 167
Msa0448950 AT5G45960.1 33.121 314 192 9 5 307 50 356 9.18e-49 168
Msa0448950 AT2G19010.1 35.127 316 179 13 4 312 32 328 1.41e-48 167
Msa0448950 AT1G06990.1 31.056 322 211 7 4 319 39 355 2.47e-48 166
Msa0448950 AT2G19010.2 35.127 316 179 13 4 312 62 358 5.27e-48 166
Msa0448950 AT2G19060.1 33.019 318 183 14 4 311 32 329 9.90e-48 164
Msa0448950 AT1G71120.1 31.975 319 198 9 4 315 33 339 3.27e-47 164
Msa0448950 AT5G33370.2 33.716 261 169 4 4 262 32 290 6.14e-47 162
Msa0448950 AT1G58520.3 31.776 321 197 10 5 319 33 337 1.04e-46 162
Msa0448950 AT1G58525.1 31.776 321 197 10 5 319 33 337 1.04e-46 162
Msa0448950 AT2G40250.1 31.077 325 210 6 4 319 38 357 1.80e-46 162
Msa0448950 AT5G03810.1 31.875 320 207 9 5 318 33 347 2.73e-46 161
Msa0448950 AT3G53100.1 33.542 319 202 8 5 318 32 345 4.19e-46 160
Msa0448950 AT2G19050.1 34.591 318 178 13 4 312 33 329 5.10e-46 160
Msa0448950 AT1G53920.1 31.068 309 193 8 4 302 50 348 9.34e-46 160
Msa0448950 AT3G43570.1 29.968 317 186 7 5 319 33 315 1.41e-45 158
Msa0448950 AT1G20132.1 30.864 324 208 9 4 319 63 378 3.19e-45 159
Msa0448950 AT2G03980.2 32.177 317 197 8 4 312 45 351 4.87e-45 158
Msa0448950 AT2G03980.3 32.177 317 197 8 4 312 45 351 4.87e-45 158
Msa0448950 AT2G03980.1 32.177 317 197 8 4 312 45 351 4.87e-45 158
Msa0448950 AT2G03980.4 32.177 317 197 8 4 312 45 351 4.87e-45 158
Msa0448950 AT1G73610.1 33.129 326 191 10 4 322 37 342 5.56e-44 154
Msa0448950 AT3G14225.2 30.864 324 205 7 4 316 39 354 2.62e-43 154
Msa0448950 AT3G14225.1 31.288 326 205 7 4 316 39 358 2.63e-43 154
Msa0448950 AT1G20130.2 31.307 329 207 10 4 319 186 508 7.98e-43 155
Msa0448950 AT5G40990.1 31.385 325 202 9 4 316 39 354 1.61e-42 151
Msa0448950 AT1G20130.1 31.307 329 207 10 4 319 206 528 1.85e-42 154
Msa0448950 AT1G20135.1 33.010 309 189 9 6 311 33 326 3.40e-42 149
Msa0448950 AT5G03820.1 31.776 321 203 9 5 316 36 349 4.30e-42 150
Msa0448950 AT5G03820.2 31.776 321 203 9 5 316 64 377 1.04e-41 149
Msa0448950 AT5G63170.1 33.007 306 185 10 6 307 32 321 2.58e-41 147
Msa0448950 AT4G30140.1 32.063 315 188 12 4 312 35 329 1.85e-40 145
Msa0448950 AT1G53940.2 29.321 324 210 7 4 316 41 356 5.01e-40 145
Msa0448950 AT1G23500.1 34.036 332 181 13 4 323 37 342 2.03e-39 142
Msa0448950 AT1G75920.2 29.503 322 199 9 6 317 33 336 1.27e-38 140
Msa0448950 AT1G53990.1 31.173 324 197 9 4 316 37 345 4.56e-38 139
Msa0448950 AT2G24560.2 32.374 278 178 7 4 276 36 308 8.05e-38 137
Msa0448950 AT2G19050.2 37.097 248 142 9 4 248 33 269 2.17e-37 135
Msa0448950 AT3G43550.1 32.319 263 164 8 5 262 33 286 1.87e-36 133
Msa0448950 AT1G75920.1 28.487 337 198 10 6 317 28 346 1.89e-35 132
Msa0448950 AT1G75930.1 31.077 325 192 12 4 316 31 335 8.41e-34 127
Msa0448950 AT1G75910.1 27.848 316 213 5 6 317 32 336 9.23e-34 127
Msa0448950 AT1G75920.4 28.283 297 186 8 31 317 29 308 3.03e-33 125
Msa0448950 AT1G54030.1 27.184 309 196 10 4 308 54 337 3.04e-32 125
Msa0448950 AT1G75920.3 27.103 321 177 8 6 317 33 305 7.61e-30 116
Msa0448950 AT2G31550.1 29.048 210 144 3 110 315 1 209 2.38e-29 112
Msa0448950 AT2G04020.2 30.573 314 156 10 4 308 45 305 8.81e-29 114
Msa0448950 AT1G53940.1 28.409 264 177 5 4 262 41 297 2.08e-28 112
Msa0448950 AT1G54020.2 26.282 312 208 8 4 312 35 327 1.28e-27 111
Msa0448950 AT2G04020.1 35.176 199 119 4 4 200 45 235 3.67e-27 108
Msa0448950 AT3G14220.1 28.750 320 199 13 2 312 32 331 6.20e-27 109
Msa0448950 AT3G05180.1 27.457 346 201 11 4 316 38 366 9.66e-27 109
Msa0448950 AT1G54000.1 25.857 321 211 10 4 316 38 339 2.74e-26 108
Msa0448950 AT3G14210.1 28.704 324 198 13 4 315 38 340 4.60e-26 107
Msa0448950 AT5G14450.1 28.060 335 201 11 6 312 45 367 7.51e-26 107
Msa0448950 AT1G54010.1 26.087 322 209 12 4 316 38 339 7.76e-26 107
Msa0448950 AT3G62280.1 27.327 333 198 11 6 316 40 350 1.60e-25 105
Msa0448950 AT1G28580.1 29.377 337 199 13 6 316 41 364 3.20e-25 105
Msa0448950 AT1G54790.3 27.874 348 193 17 6 316 36 362 7.93e-25 103
Msa0448950 AT1G54030.2 26.718 262 165 8 4 261 54 292 3.69e-24 100
Msa0448950 AT1G31550.2 27.941 340 201 11 6 317 40 363 5.96e-24 101
Msa0448950 AT1G67830.1 26.686 341 202 11 4 311 32 357 7.91e-24 101
Msa0448950 AT5G03610.1 24.762 315 207 8 4 307 45 340 1.06e-23 100
Msa0448950 AT2G27360.1 27.410 332 205 13 6 312 37 357 1.45e-23 100
Msa0448950 AT4G16233.1 40.187 107 63 1 211 316 6 112 2.95e-23 94.0
Msa0448950 AT3G26430.1 26.801 347 202 11 4 315 33 362 4.11e-23 99.4
Msa0448950 AT1G09390.1 26.479 355 211 14 2 334 37 363 6.37e-23 98.6
Msa0448950 AT3G48460.1 25.904 332 209 12 4 312 40 357 1.13e-22 98.2
Msa0448950 AT4G01130.1 25.217 345 211 13 4 316 36 365 3.44e-22 96.7
Msa0448950 AT1G54790.1 27.019 359 186 16 4 316 33 361 5.60e-22 95.9
Msa0448950 AT1G28570.1 27.003 337 209 13 6 317 38 362 7.43e-22 95.9
Msa0448950 AT3G27950.1 26.331 338 208 11 4 316 34 355 1.45e-21 94.7
Msa0448950 AT5G45910.1 30.612 343 196 18 4 316 32 362 1.66e-21 94.7
Msa0448950 AT1G56670.1 26.331 338 205 15 2 316 40 356 2.71e-21 94.0
Msa0448950 AT1G28590.1 26.786 336 211 12 6 317 40 364 5.03e-21 93.6
Msa0448950 AT1G28610.2 26.786 336 210 12 6 317 35 358 6.54e-21 93.2
Msa0448950 AT1G28600.1 25.664 339 208 11 6 316 35 357 2.23e-19 88.6
Msa0448950 AT1G31550.1 26.765 340 202 12 6 317 40 360 4.20e-19 87.8
Msa0448950 AT1G28660.1 25.519 337 212 12 6 316 39 362 6.50e-19 87.4
Msa0448950 AT1G28650.1 24.850 334 218 11 6 316 41 364 1.06e-18 86.7
Msa0448950 AT1G28660.2 25.223 337 212 13 6 316 39 361 3.66e-18 85.1
Msa0448950 AT3G09930.2 23.404 329 219 9 4 319 41 349 4.00e-18 84.7
Msa0448950 AT3G09930.1 23.404 329 219 9 4 319 41 349 4.00e-18 84.7
Msa0448950 AT1G28640.1 24.251 334 220 13 6 316 39 362 1.18e-17 83.6
Msa0448950 AT1G54020.1 24.031 258 176 7 58 312 1 241 1.23e-17 82.4
Msa0448950 AT1G54020.5 24.031 258 176 7 58 312 1 241 1.23e-17 82.4
Msa0448950 AT1G54020.3 24.031 258 176 7 58 312 1 241 1.23e-17 82.4
Msa0448950 AT1G28670.1 25.617 324 211 11 6 307 39 354 8.76e-17 80.9
Msa0448950 AT4G16220.1 37.324 142 84 4 3 143 31 168 5.78e-16 77.0
Msa0448950 AT1G54020.4 27.451 153 108 2 163 312 40 192 1.34e-15 75.5
Msa0448950 AT4G01130.3 23.322 283 179 9 66 316 3 279 2.16e-15 75.9
Msa0448950 AT3G62280.2 27.007 274 161 10 6 262 40 291 2.54e-14 72.8
Msa0448950 AT4G01130.2 25.271 277 175 10 4 262 36 298 3.34e-14 73.2
Msa0448950 AT3G14210.2 26.887 212 140 8 115 315 5 212 1.41e-13 70.5
Msa0448950 AT1G28580.2 26.502 283 172 11 58 316 13 283 3.48e-13 69.7
Msa0448950 AT2G36325.1 24.308 325 212 13 4 316 49 351 5.18e-11 63.5

Find 88 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAGGCCTCCAGCATTTC+TGG 0.064442 3_3:+30957847 Msa0448950:CDS
ATAGAAGCAAGTACGTATTT+TGG 0.172975 3_3:+30960296 Msa0448950:CDS
AGCTCTTTGCCTTTGTAATT+TGG 0.181494 3_3:+30960531 Msa0448950:three_prime_UTR
CCATTACAATAGAAATTTAA+TGG 0.182143 3_3:-30960498 None:intergenic
TACATGTTTAGGTGACAATA+TGG 0.234845 3_3:+30957820 Msa0448950:intron
GTCTTTGGGCTGGGCCCAAT+GGG 0.246354 3_3:+30959353 Msa0448950:CDS
GAACTAATTAGAAGCAAAAT+TGG 0.258541 3_3:+30958362 Msa0448950:CDS
CCTTGGTATGGTATTGATAT+AGG 0.265630 3_3:+30957007 Msa0448950:CDS
GACTCACCATGTTGCTCATT+TGG 0.279634 3_3:+30960223 Msa0448950:CDS
GGTCTTTGGGCTGGGCCCAA+TGG 0.280375 3_3:+30959352 Msa0448950:CDS
GCAAGGCAACTGATGGTCTT+TGG 0.287259 3_3:+30959338 Msa0448950:CDS
AGTGAGGTAGTAAATGATTT+GGG 0.289269 3_3:+30959464 Msa0448950:CDS
TTTAAGTGAAGATGTTATAT+TGG 0.296957 3_3:+30957877 Msa0448950:CDS
ACTGAACTCATCAAGAAGTT+TGG 0.302955 3_3:+30960361 Msa0448950:CDS
GCACGTTATGTTGTTGCTTT+AGG 0.308496 3_3:+30958416 Msa0448950:CDS
CAAAGAGTCCTTAGTACATC+TGG 0.308692 3_3:+30959389 Msa0448950:CDS
GAAGATGTTATATTGGAAAA+TGG 0.314449 3_3:+30957884 Msa0448950:CDS
TGCCTCTTTATAGTGATTCA+TGG 0.314992 3_3:+30958468 Msa0448950:CDS
AACATGGTGAGTCTGCATTT+TGG 0.326085 3_3:-30960213 None:intergenic
CTGAACTCATCAAGAAGTTT+GGG 0.326694 3_3:+30960362 Msa0448950:CDS
ATTAGCAACCCCAGCAAGTA+TGG 0.336548 3_3:+30959548 Msa0448950:CDS
GCAACTGATGGTCTTTGGGC+TGG 0.343547 3_3:+30959343 Msa0448950:CDS
CCATTAAATTTCTATTGTAA+TGG 0.345373 3_3:+30960498 Msa0448950:three_prime_UTR
CAAGGCAACTGATGGTCTTT+GGG 0.345742 3_3:+30959339 Msa0448950:CDS
AATGGAGTAAACTATGCTTC+TGG 0.349079 3_3:+30957902 Msa0448950:CDS
CGTACAGTTGCTGATATTAT+AGG 0.351578 3_3:+30957064 Msa0448950:CDS
CCAAATCTGTAGCTTGCATT+TGG 0.374809 3_3:-30959497 None:intergenic
CAACTGATGGTCTTTGGGCT+GGG 0.375703 3_3:+30959344 Msa0448950:CDS
ACTCACCATGTTGCTCATTT+GGG 0.381809 3_3:+30960224 Msa0448950:CDS
CCAAATGCAAGCTACAGATT+TGG 0.382063 3_3:+30959497 Msa0448950:CDS
ACCTTCATTGATTACTTAGT+AGG 0.385384 3_3:+30958506 Msa0448950:CDS
AAACAAATTGAGCTGTTTCA+AGG 0.396976 3_3:+30958332 Msa0448950:CDS
AAGTGAGGTAGTAAATGATT+TGG 0.397728 3_3:+30959463 Msa0448950:CDS
ACATGTTTAGGTGACAATAT+GGG 0.408796 3_3:+30957821 Msa0448950:intron
TATGGTATTGATATAGGAAA+TGG 0.415031 3_3:+30957013 Msa0448950:CDS
GAAGGGGAATGCAGCCCATT+GGG 0.429532 3_3:-30959367 None:intergenic
ATAGGAAATGGACTTCCTAA+TGG 0.436248 3_3:+30957025 Msa0448950:CDS
CCATTAGAGAACCTCCCATT+AGG 0.441445 3_3:-30957040 None:intergenic
GTGACAATATGGGGCTTCCT+AGG 0.453449 3_3:+30957831 Msa0448950:CDS
TCCAGAAATGCTGGAGGCCT+AGG 0.461614 3_3:-30957848 None:intergenic
ATGTACTAAGGACTCTTTGA+AGG 0.476349 3_3:-30959385 None:intergenic
TAGGAAATGGACTTCCTAAT+GGG 0.480982 3_3:+30957026 Msa0448950:CDS
ATAACATCTTCACTTAAAGA+TGG 0.482637 3_3:-30957872 None:intergenic
CCTAATGGGAGGTTCTCTAA+TGG 0.482897 3_3:+30957040 Msa0448950:CDS
AGTTCATTAGCTTTGTCTGA+TGG 0.485030 3_3:-30960331 None:intergenic
AACAAATTGAGCTGTTTCAA+GGG 0.487213 3_3:+30958333 Msa0448950:CDS
TGAAGGGGAATGCAGCCCAT+TGG 0.497511 3_3:-30959368 None:intergenic
AACTATGCTTCTGGAGGTGG+TGG 0.499056 3_3:+30957911 Msa0448950:CDS
GACAATTCCCAGATGTACTA+AGG 0.500454 3_3:-30959397 None:intergenic
GGTGATTCTTTATCTGATGT+TGG 0.502099 3_3:+30956941 Msa0448950:CDS
CAAGCAAGTTTGCCTTGGTA+TGG 0.502737 3_3:+30956995 Msa0448950:CDS
GGTGGCATATTGAATGAAAC+TGG 0.503719 3_3:+30957929 Msa0448950:CDS
GAAGGAGATGGAGCAACCTC+TGG 0.504019 3_3:-30960424 None:intergenic
TTGCTCAAGCAAGTTTGCCT+TGG 0.504515 3_3:+30956990 Msa0448950:CDS
GTAAACTATGCTTCTGGAGG+TGG 0.504846 3_3:+30957908 Msa0448950:CDS
TCCTACTAAGTAATCAATGA+AGG 0.504930 3_3:-30958507 None:intergenic
CCATCAGTTGCCTTGCGCCT+AGG 0.509636 3_3:-30959331 None:intergenic
GTCCATGAATCACTATAAAG+AGG 0.514127 3_3:-30958470 None:intergenic
AACACTTCAAGAACAACTAA+AGG 0.521281 3_3:+30958529 Msa0448950:CDS
AAAGATGGGTCCAGAAATGC+TGG 0.521979 3_3:-30957857 None:intergenic
TCTTTGCACAATGTTGATGC+TGG 0.523376 3_3:-30960274 None:intergenic
CATGTTTAGGTGACAATATG+GGG 0.525761 3_3:+30957822 Msa0448950:intron
CACCATGTTGCTCATTTGGG+AGG 0.534108 3_3:+30960227 Msa0448950:CDS
TTGTATAATTAATCATCTGA+AGG 0.547376 3_3:-30960442 None:intergenic
TAACATCTTCACTTAAAGAT+GGG 0.549902 3_3:-30957871 None:intergenic
AAAGAGTCCTTAGTACATCT+GGG 0.564543 3_3:+30959390 Msa0448950:CDS
AATTAATCATCTGAAGGAGA+TGG 0.573103 3_3:-30960436 None:intergenic
CCTAGGCGCAAGGCAACTGA+TGG 0.583140 3_3:+30959331 Msa0448950:CDS
AATTAGAAGCAAAATTGGAA+AGG 0.589388 3_3:+30958367 Msa0448950:CDS
TGTACTAAGGACTCTTTGAA+GGG 0.590352 3_3:-30959384 None:intergenic
TACTGCATAGCCTAGGCGCA+AGG 0.595564 3_3:+30959321 Msa0448950:CDS
TTTACTTACCATACTTGCTG+GGG 0.611867 3_3:-30959556 None:intergenic
GCAACCTCTGGTGATGGTGA+AGG 0.624396 3_3:-30960412 None:intergenic
GTTTAGGTACTGCATAGCCT+AGG 0.624460 3_3:+30959314 Msa0448950:intron
AACTCAAAACCAAATTACAA+AGG 0.624485 3_3:-30960540 None:intergenic
AAACTTCTTGATGAGTTCAG+TGG 0.642304 3_3:-30960359 None:intergenic
GCTGGTATACATGTAAGAGC+TGG 0.647675 3_3:-30960256 None:intergenic
GGAGTAAACTATGCTTCTGG+AGG 0.648773 3_3:+30957905 Msa0448950:CDS
GATGGAGCAACCTCTGGTGA+TGG 0.650771 3_3:-30960418 None:intergenic
GTGAGGTAGTAAATGATTTG+GGG 0.650999 3_3:+30959465 Msa0448950:CDS
AACTCCTTCACCATCACCAG+AGG 0.652672 3_3:+30960408 Msa0448950:CDS
GAAATGGACTTCCTAATGGG+AGG 0.658829 3_3:+30957029 Msa0448950:CDS
CTTTAACAAAGCATCAAGTG+AGG 0.659461 3_3:+30959448 Msa0448950:CDS
GTACTAAGGACTCTTTGAAG+GGG 0.664714 3_3:-30959383 None:intergenic
CCTATATCAATACCATACCA+AGG 0.668954 3_3:-30957007 None:intergenic
ATTTGGAGATGCTTATGATG+TGG 0.679980 3_3:+30959514 Msa0448950:CDS
ATCCTCCCAAATGAGCAACA+TGG 0.688236 3_3:-30960229 None:intergenic
GATGGGTCCAGAAATGCTGG+AGG 0.718465 3_3:-30957854 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATTTTATTTTCATTT+TGG - chr3_3:30957506-30957525 None:intergenic 10.0%
!!! GTCTTTTTTTTTTTTTTTTA+AGG + chr3_3:30959236-30959255 Msa0448950:intron 10.0%
!!! CTTTTCTCTATAAAAAATAT+TGG + chr3_3:30958680-30958699 Msa0448950:intron 15.0%
!!! AAATTATTAATTTGTTGTGA+AGG + chr3_3:30958703-30958722 Msa0448950:intron 15.0%
!! CATTGAAAATATTATGATAA+TGG - chr3_3:30960186-30960205 None:intergenic 15.0%
!!! TATCATAATATTTTCAATGT+AGG + chr3_3:30960187-30960206 Msa0448950:intron 15.0%
!! ATTATTGTATTTAGGAACTT+TGG - chr3_3:30957477-30957496 None:intergenic 20.0%
!! GGTAGAAAATTATTGTATTT+AGG - chr3_3:30957485-30957504 None:intergenic 20.0%
!! ACATAAAGTGTGAATTATAA+TGG + chr3_3:30957662-30957681 Msa0448950:intron 20.0%
!! CTCATATTATTTACATGTTT+AGG + chr3_3:30957809-30957828 Msa0448950:intron 20.0%
!! TTTAAGTGAAGATGTTATAT+TGG + chr3_3:30957877-30957896 Msa0448950:CDS 20.0%
!!! AGTTATTTTGTAAGATTACA+AGG + chr3_3:30957953-30957972 Msa0448950:intron 20.0%
!! CGTTGAAAATTGAAAAATTA+TGG + chr3_3:30958088-30958107 Msa0448950:intron 20.0%
!! TCAATCTATGATGAAAATTA+TGG - chr3_3:30958135-30958154 None:intergenic 20.0%
!!! TTTATGCTATTTGACATTTA+TGG + chr3_3:30958218-30958237 Msa0448950:intron 20.0%
!!! AGTTTAAATCTCTTTAAAAC+TGG - chr3_3:30958981-30959000 None:intergenic 20.0%
!! TGAAAATCCTAACAAATAAA+GGG - chr3_3:30959110-30959129 None:intergenic 20.0%
!! TTGAAAATCCTAACAAATAA+AGG - chr3_3:30959111-30959130 None:intergenic 20.0%
!!! TTCCATTCAACATTTTTTAT+AGG - chr3_3:30959207-30959226 None:intergenic 20.0%
!!! ATCATGCTTTTAAAATGTTT+AGG + chr3_3:30959298-30959317 Msa0448950:intron 20.0%
!!! ACTTAAATTTGTTTTTAGAG+TGG - chr3_3:30959812-30959831 None:intergenic 20.0%
!!! CAATTTGTATGCAATTTTTT+AGG + chr3_3:30959875-30959894 Msa0448950:intron 20.0%
!! TTGTATAATTAATCATCTGA+AGG - chr3_3:30960445-30960464 None:intergenic 20.0%
!! CCATTACAATAGAAATTTAA+TGG - chr3_3:30960501-30960520 None:intergenic 20.0%
!! CCATTAAATTTCTATTGTAA+TGG + chr3_3:30960498-30960517 Msa0448950:three_prime_UTR 20.0%
!!! TATGGTATTGATATAGGAAA+TGG + chr3_3:30957013-30957032 Msa0448950:CDS 25.0%
!! ATTTGCACATGATTAATTTG+TGG + chr3_3:30957110-30957129 Msa0448950:intron 25.0%
! TATAGTACACAAGAAATTAG+TGG + chr3_3:30957138-30957157 Msa0448950:intron 25.0%
!! TCGAACTAAGATTTTATGAA+AGG + chr3_3:30957306-30957325 Msa0448950:intron 25.0%
!! GATACTATTTGGAGTAAATA+GGG + chr3_3:30957449-30957468 Msa0448950:intron 25.0%
! ACAATCAAGTAAAGCTAATT+TGG + chr3_3:30957544-30957563 Msa0448950:intron 25.0%
! CACAATTATTGGATGATAAT+CGG - chr3_3:30957591-30957610 None:intergenic 25.0%
! ATTTATTCTACTTAGAGCAT+AGG - chr3_3:30957723-30957742 None:intergenic 25.0%
! TAACATCTTCACTTAAAGAT+GGG - chr3_3:30957874-30957893 None:intergenic 25.0%
! ATAACATCTTCACTTAAAGA+TGG - chr3_3:30957875-30957894 None:intergenic 25.0%
! GAAGATGTTATATTGGAAAA+TGG + chr3_3:30957884-30957903 Msa0448950:CDS 25.0%
! TCTGTTCGTATTCAAAATTA+TGG + chr3_3:30958031-30958050 Msa0448950:intron 25.0%
! TTAATCACATTCAAAACATG+TGG - chr3_3:30958184-30958203 None:intergenic 25.0%
! TAATAATCAGTGACTTTCTT+TGG - chr3_3:30958255-30958274 None:intergenic 25.0%
! GAACTAATTAGAAGCAAAAT+TGG + chr3_3:30958362-30958381 Msa0448950:CDS 25.0%
! AATTAGAAGCAAAATTGGAA+AGG + chr3_3:30958367-30958386 Msa0448950:CDS 25.0%
! TCATTTCTTTGTGTTTCATT+TGG + chr3_3:30958582-30958601 Msa0448950:intron 25.0%
! CATTTCTTTGTGTTTCATTT+GGG + chr3_3:30958583-30958602 Msa0448950:intron 25.0%
!!! TTATTAATTTGTTGTGAAGG+AGG + chr3_3:30958706-30958725 Msa0448950:intron 25.0%
!!! CAATGTAAAATTGCTACTTT+TGG + chr3_3:30958920-30958939 Msa0448950:intron 25.0%
! TACTGTTGAGAATTTAAATC+CGG + chr3_3:30959031-30959050 Msa0448950:intron 25.0%
! TCAAATTCAGTCATGTAAAA+AGG + chr3_3:30959127-30959146 Msa0448950:intron 25.0%
!!! CATTTTTTATAGGCTCTTAT+TGG - chr3_3:30959197-30959216 None:intergenic 25.0%
! AGCCTATAAAAAATGTTGAA+TGG + chr3_3:30959202-30959221 Msa0448950:intron 25.0%
!!! AGGAAGAAATAGTCTTATTT+AGG + chr3_3:30959256-30959275 Msa0448950:intron 25.0%
!!! GGAAGAAATAGTCTTATTTA+GGG + chr3_3:30959257-30959276 Msa0448950:intron 25.0%
!!! TATTTCGTTTTTGTTTTCAG+AGG + chr3_3:30959643-30959662 Msa0448950:intron 25.0%
!! AAAAAACATACAAAGTGTTC+TGG - chr3_3:30959720-30959739 None:intergenic 25.0%
!!! TTTTTTCTCACAATATCAGA+AGG + chr3_3:30959914-30959933 Msa0448950:intron 25.0%
! GAATCCATAAACTCTTAAAA+TGG + chr3_3:30960015-30960034 Msa0448950:intron 25.0%
!!! TCATCCATTTTAAGAGTTTA+TGG - chr3_3:30960022-30960041 None:intergenic 25.0%
! CTATCAGTAGAAATCTAATT+CGG + chr3_3:30960067-30960086 Msa0448950:intron 25.0%
!!! ATAATGGAAATCATTTTCAC+GGG - chr3_3:30960170-30960189 None:intergenic 25.0%
!!! GATAATGGAAATCATTTTCA+CGG - chr3_3:30960171-30960190 None:intergenic 25.0%
! AACTCAAAACCAAATTACAA+AGG - chr3_3:30960543-30960562 None:intergenic 25.0%
TATGAGACTAATCTTTGCTT+AGG - chr3_3:30957401-30957420 None:intergenic 30.0%
! ATTCAAAAGATCGAAGCTTT+TGG + chr3_3:30957425-30957444 Msa0448950:intron 30.0%
! TTCAAAAGATCGAAGCTTTT+GGG + chr3_3:30957426-30957445 Msa0448950:intron 30.0%
! GGATACTATTTGGAGTAAAT+AGG + chr3_3:30957448-30957467 Msa0448950:intron 30.0%
AATCGAGGAATCACAATTAT+TGG - chr3_3:30957602-30957621 None:intergenic 30.0%
ATTCACACTTTATGTAGCAA+AGG - chr3_3:30957657-30957676 None:intergenic 30.0%
TGGACGACATATTAAAAAAG+TGG + chr3_3:30957682-30957701 Msa0448950:intron 30.0%
ATGAGTATGATAATAGCATG+AGG - chr3_3:30957794-30957813 None:intergenic 30.0%
TACATGTTTAGGTGACAATA+TGG + chr3_3:30957820-30957839 Msa0448950:intron 30.0%
ACATGTTTAGGTGACAATAT+GGG + chr3_3:30957821-30957840 Msa0448950:intron 30.0%
CGAACAGATATAACATATGT+AGG - chr3_3:30958019-30958038 None:intergenic 30.0%
AAAATCTTTGAATCTGCACA+AGG - chr3_3:30958304-30958323 None:intergenic 30.0%
! AAACAAATTGAGCTGTTTCA+AGG + chr3_3:30958332-30958351 Msa0448950:CDS 30.0%
! AACAAATTGAGCTGTTTCAA+GGG + chr3_3:30958333-30958352 Msa0448950:CDS 30.0%
! ACCTTCATTGATTACTTAGT+AGG + chr3_3:30958506-30958525 Msa0448950:CDS 30.0%
TCCTACTAAGTAATCAATGA+AGG - chr3_3:30958510-30958529 None:intergenic 30.0%
AACACTTCAAGAACAACTAA+AGG + chr3_3:30958529-30958548 Msa0448950:CDS 30.0%
GAAATTCACATTAACTGAAC+CGG - chr3_3:30959053-30959072 None:intergenic 30.0%
!! TTTTGACTCTGAGAAATATG+CGG - chr3_3:30959086-30959105 None:intergenic 30.0%
! TCAAAAGCCCTTTATTTGTT+AGG + chr3_3:30959100-30959119 Msa0448950:intron 30.0%
!!! TTGCAGATTTTTTACATGTC+CGG + chr3_3:30959156-30959175 Msa0448950:intron 30.0%
! TTGGTTCAGAGTTTAAAATC+CGG - chr3_3:30959178-30959197 None:intergenic 30.0%
AAGTGAGGTAGTAAATGATT+TGG + chr3_3:30959463-30959482 Msa0448950:CDS 30.0%
AGTGAGGTAGTAAATGATTT+GGG + chr3_3:30959464-30959483 Msa0448950:CDS 30.0%
! TTTTACTTACCATACTTGCT+GGG - chr3_3:30959560-30959579 None:intergenic 30.0%
! ATTTTACTTACCATACTTGC+TGG - chr3_3:30959561-30959580 None:intergenic 30.0%
! CTAACATTTTCATAACATCG+AGG - chr3_3:30960142-30960161 None:intergenic 30.0%
! ATAGAAGCAAGTACGTATTT+TGG + chr3_3:30960296-30960315 Msa0448950:CDS 30.0%
! TAGAAGCAAGTACGTATTTT+GGG + chr3_3:30960297-30960316 Msa0448950:CDS 30.0%
AATTAATCATCTGAAGGAGA+TGG - chr3_3:30960439-30960458 None:intergenic 30.0%
GGTGATTCTTTATCTGATGT+TGG + chr3_3:30956941-30956960 Msa0448950:CDS 35.0%
CCTATATCAATACCATACCA+AGG - chr3_3:30957010-30957029 None:intergenic 35.0%
!! CCTTGGTATGGTATTGATAT+AGG + chr3_3:30957007-30957026 Msa0448950:CDS 35.0%
! ATAGGAAATGGACTTCCTAA+TGG + chr3_3:30957025-30957044 Msa0448950:CDS 35.0%
! TAGGAAATGGACTTCCTAAT+GGG + chr3_3:30957026-30957045 Msa0448950:CDS 35.0%
CGTACAGTTGCTGATATTAT+AGG + chr3_3:30957064-30957083 Msa0448950:CDS 35.0%
CTTGATGAGAATGTGTTATG+CGG - chr3_3:30957347-30957366 None:intergenic 35.0%
GCATAACACATTCTCATCAA+GGG + chr3_3:30957346-30957365 Msa0448950:intron 35.0%
CATAACACATTCTCATCAAG+GGG + chr3_3:30957347-30957366 Msa0448950:intron 35.0%
! TCAAGGGGAGATGATTTTTA+AGG + chr3_3:30957362-30957381 Msa0448950:intron 35.0%
! TCAAAAGATCGAAGCTTTTG+GGG + chr3_3:30957427-30957446 Msa0448950:intron 35.0%
!! AAGCTTTTGGGGATACTATT+TGG + chr3_3:30957438-30957457 Msa0448950:intron 35.0%
AAGGTCTTGGATTTACTACA+TGG - chr3_3:30957638-30957657 None:intergenic 35.0%
ACTTTATGTAGCAAAGGTCT+TGG - chr3_3:30957651-30957670 None:intergenic 35.0%
CATGTTTAGGTGACAATATG+GGG + chr3_3:30957822-30957841 Msa0448950:intron 35.0%
AATGGAGTAAACTATGCTTC+TGG + chr3_3:30957902-30957921 Msa0448950:CDS 35.0%
!!! TGAAGCAGAGAAGTTTTTTC+TGG + chr3_3:30958391-30958410 Msa0448950:CDS 35.0%
TGCCTCTTTATAGTGATTCA+TGG + chr3_3:30958468-30958487 Msa0448950:CDS 35.0%
GTCCATGAATCACTATAAAG+AGG - chr3_3:30958473-30958492 None:intergenic 35.0%
! TTTGACTCTGAGAAATATGC+GGG - chr3_3:30959085-30959104 None:intergenic 35.0%
TGTACTAAGGACTCTTTGAA+GGG - chr3_3:30959387-30959406 None:intergenic 35.0%
ATGTACTAAGGACTCTTTGA+AGG - chr3_3:30959388-30959407 None:intergenic 35.0%
AAAGAGTCCTTAGTACATCT+GGG + chr3_3:30959390-30959409 Msa0448950:CDS 35.0%
! CTTTAACAAAGCATCAAGTG+AGG + chr3_3:30959448-30959467 Msa0448950:CDS 35.0%
GTGAGGTAGTAAATGATTTG+GGG + chr3_3:30959465-30959484 Msa0448950:CDS 35.0%
ATTTGGAGATGCTTATGATG+TGG + chr3_3:30959514-30959533 Msa0448950:CDS 35.0%
! TTTACTTACCATACTTGCTG+GGG - chr3_3:30959559-30959578 None:intergenic 35.0%
!! AGTTCATTAGCTTTGTCTGA+TGG - chr3_3:30960334-30960353 None:intergenic 35.0%
AAACTTCTTGATGAGTTCAG+TGG - chr3_3:30960362-30960381 None:intergenic 35.0%
ACTGAACTCATCAAGAAGTT+TGG + chr3_3:30960361-30960380 Msa0448950:CDS 35.0%
CTGAACTCATCAAGAAGTTT+GGG + chr3_3:30960362-30960381 Msa0448950:CDS 35.0%
AGCTCTTTGCCTTTGTAATT+TGG + chr3_3:30960531-30960550 Msa0448950:three_prime_UTR 35.0%
CACAAGAAATTAGTGGTCGT+TGG + chr3_3:30957145-30957164 Msa0448950:intron 40.0%
TTAACTGAGTCTGACTGAGT+TGG + chr3_3:30957278-30957297 Msa0448950:intron 40.0%
CGCATAACACATTCTCATCA+AGG + chr3_3:30957345-30957364 Msa0448950:intron 40.0%
TCTACTTAGAGCATAGGTCT+TGG - chr3_3:30957717-30957736 None:intergenic 40.0%
GGTGGCATATTGAATGAAAC+TGG + chr3_3:30957929-30957948 Msa0448950:CDS 40.0%
!! GCACGTTATGTTGTTGCTTT+AGG + chr3_3:30958416-30958435 Msa0448950:CDS 40.0%
! TTGACTCTGAGAAATATGCG+GGG - chr3_3:30959084-30959103 None:intergenic 40.0%
! GTACTAAGGACTCTTTGAAG+GGG - chr3_3:30959386-30959405 None:intergenic 40.0%
CAAAGAGTCCTTAGTACATC+TGG + chr3_3:30959389-30959408 Msa0448950:CDS 40.0%
GACAATTCCCAGATGTACTA+AGG - chr3_3:30959400-30959419 None:intergenic 40.0%
! CCAAATCTGTAGCTTGCATT+TGG - chr3_3:30959500-30959519 None:intergenic 40.0%
CCAAATGCAAGCTACAGATT+TGG + chr3_3:30959497-30959516 Msa0448950:CDS 40.0%
! AACATGGTGAGTCTGCATTT+TGG - chr3_3:30960216-30960235 None:intergenic 40.0%
ACTCACCATGTTGCTCATTT+GGG + chr3_3:30960224-30960243 Msa0448950:CDS 40.0%
TCTTTGCACAATGTTGATGC+TGG - chr3_3:30960277-30960296 None:intergenic 40.0%
TTGCTCAAGCAAGTTTGCCT+TGG + chr3_3:30956990-30957009 Msa0448950:CDS 45.0%
CAAGCAAGTTTGCCTTGGTA+TGG + chr3_3:30956995-30957014 Msa0448950:CDS 45.0%
! GAAATGGACTTCCTAATGGG+AGG + chr3_3:30957029-30957048 Msa0448950:CDS 45.0%
CCATTAGAGAACCTCCCATT+AGG - chr3_3:30957043-30957062 None:intergenic 45.0%
CCTAATGGGAGGTTCTCTAA+TGG + chr3_3:30957040-30957059 Msa0448950:CDS 45.0%
GGAGCATAATCATGCAATCG+AGG - chr3_3:30957617-30957636 None:intergenic 45.0%
AAAGATGGGTCCAGAAATGC+TGG - chr3_3:30957860-30957879 None:intergenic 45.0%
GGAGTAAACTATGCTTCTGG+AGG + chr3_3:30957905-30957924 Msa0448950:CDS 45.0%
! GTAAACTATGCTTCTGGAGG+TGG + chr3_3:30957908-30957927 Msa0448950:CDS 45.0%
! GTTTAGGTACTGCATAGCCT+AGG + chr3_3:30959314-30959333 Msa0448950:intron 45.0%
CAAGGCAACTGATGGTCTTT+GGG + chr3_3:30959339-30959358 Msa0448950:CDS 45.0%
ATTAGCAACCCCAGCAAGTA+TGG + chr3_3:30959548-30959567 Msa0448950:CDS 45.0%
GACTCACCATGTTGCTCATT+TGG + chr3_3:30960223-30960242 Msa0448950:CDS 45.0%
ATCCTCCCAAATGAGCAACA+TGG - chr3_3:30960232-30960251 None:intergenic 45.0%
GCTGGTATACATGTAAGAGC+TGG - chr3_3:30960259-30960278 None:intergenic 45.0%
GTGACAATATGGGGCTTCCT+AGG + chr3_3:30957831-30957850 Msa0448950:CDS 50.0%
! AACTATGCTTCTGGAGGTGG+TGG + chr3_3:30957911-30957930 Msa0448950:CDS 50.0%
! ACTCTGAGAAATATGCGGGG+TGG - chr3_3:30959081-30959100 None:intergenic 50.0%
GCAAGGCAACTGATGGTCTT+TGG + chr3_3:30959338-30959357 Msa0448950:CDS 50.0%
CAACTGATGGTCTTTGGGCT+GGG + chr3_3:30959344-30959363 Msa0448950:CDS 50.0%
CACCATGTTGCTCATTTGGG+AGG + chr3_3:30960227-30960246 Msa0448950:CDS 50.0%
AACTCCTTCACCATCACCAG+AGG + chr3_3:30960408-30960427 Msa0448950:CDS 50.0%
TCCTAGGCCTCCAGCATTTC+TGG + chr3_3:30957847-30957866 Msa0448950:CDS 55.0%
TCCAGAAATGCTGGAGGCCT+AGG - chr3_3:30957851-30957870 None:intergenic 55.0%
GATGGGTCCAGAAATGCTGG+AGG - chr3_3:30957857-30957876 None:intergenic 55.0%
TACTGCATAGCCTAGGCGCA+AGG + chr3_3:30959321-30959340 Msa0448950:CDS 55.0%
GCAACTGATGGTCTTTGGGC+TGG + chr3_3:30959343-30959362 Msa0448950:CDS 55.0%
GAAGGGGAATGCAGCCCATT+GGG - chr3_3:30959370-30959389 None:intergenic 55.0%
TGAAGGGGAATGCAGCCCAT+TGG - chr3_3:30959371-30959390 None:intergenic 55.0%
ACATCGAGGTCTAGCGCATG+TGG - chr3_3:30960128-30960147 None:intergenic 55.0%
!! GCAACCTCTGGTGATGGTGA+AGG - chr3_3:30960415-30960434 None:intergenic 55.0%
GATGGAGCAACCTCTGGTGA+TGG - chr3_3:30960421-30960440 None:intergenic 55.0%
GAAGGAGATGGAGCAACCTC+TGG - chr3_3:30960427-30960446 None:intergenic 55.0%
CCATCAGTTGCCTTGCGCCT+AGG - chr3_3:30959334-30959353 None:intergenic 60.0%
CCTAGGCGCAAGGCAACTGA+TGG + chr3_3:30959331-30959350 Msa0448950:CDS 60.0%
! GTCTTTGGGCTGGGCCCAAT+GGG + chr3_3:30959353-30959372 Msa0448950:CDS 60.0%
CGAGGTCTAGCGCATGTGGT+TGG - chr3_3:30960124-30960143 None:intergenic 60.0%
! GGTCTTTGGGCTGGGCCCAA+TGG + chr3_3:30959352-30959371 Msa0448950:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 30956923 30960571 30956923 ID=Msa0448950;Name=Msa0448950
chr3_3 mRNA 30956923 30960571 30956923 ID=Msa0448950-mRNA-1;Parent=Msa0448950;Name=Msa0448950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.4|1|1|0.8|5|115|343
chr3_3 exon 30956923 30957085 30956923 ID=Msa0448950-mRNA-1:exon:5701;Parent=Msa0448950-mRNA-1
chr3_3 exon 30957831 30957961 30957831 ID=Msa0448950-mRNA-1:exon:5702;Parent=Msa0448950-mRNA-1
chr3_3 exon 30958311 30958550 30958311 ID=Msa0448950-mRNA-1:exon:5703;Parent=Msa0448950-mRNA-1
chr3_3 exon 30959320 30959569 30959320 ID=Msa0448950-mRNA-1:exon:5704;Parent=Msa0448950-mRNA-1
chr3_3 exon 30960209 30960571 30960209 ID=Msa0448950-mRNA-1:exon:5705;Parent=Msa0448950-mRNA-1
chr3_3 CDS 30956923 30957085 30956923 ID=Msa0448950-mRNA-1:cds;Parent=Msa0448950-mRNA-1
chr3_3 CDS 30957831 30957961 30957831 ID=Msa0448950-mRNA-1:cds;Parent=Msa0448950-mRNA-1
chr3_3 CDS 30958311 30958550 30958311 ID=Msa0448950-mRNA-1:cds;Parent=Msa0448950-mRNA-1
chr3_3 CDS 30959320 30959569 30959320 ID=Msa0448950-mRNA-1:cds;Parent=Msa0448950-mRNA-1
chr3_3 CDS 30960209 30960456 30960209 ID=Msa0448950-mRNA-1:cds;Parent=Msa0448950-mRNA-1
chr3_3 three_prime_UTR 30960457 30960571 30960457 ID=Msa0448950-mRNA-1:three_prime_utr;Parent=Msa0448950-mRNA-1
Gene Sequence

>Msa0448950

ATGGTGCAGTTTATTTTTGGTGATTCTTTATCTGATGTTGGAAATAACAAATACTTATCTAAAAGTCTTGCTCAAGCAAGTTTGCCTTGGTATGGTATTGATATAGGAAATGGACTTCCTAATGGGAGGTTCTCTAATGGTCGTACAGTTGCTGATATTATAGGTGACAATATGGGGCTTCCTAGGCCTCCAGCATTTCTGGACCCATCTTTAAGTGAAGATGTTATATTGGAAAATGGAGTAAACTATGCTTCTGGAGGTGGTGGCATATTGAATGAAACTGGCAGTTATTTTATTCAAAGATTTTCTCTCTACAAACAAATTGAGCTGTTTCAAGGGACACAAGAACTAATTAGAAGCAAAATTGGAAAGGTTGAAGCAGAGAAGTTTTTTCTGGAAGCACGTTATGTTGTTGCTTTAGGTAGCAATGACTTCATCAACAATTATTTGATGCCTCTTTATAGTGATTCATGGACATACAACGATGAAACCTTCATTGATTACTTAGTAGGAACACTTCAAGAACAACTAAAGGTACTGCATAGCCTAGGCGCAAGGCAACTGATGGTCTTTGGGCTGGGCCCAATGGGCTGCATTCCCCTTCAAAGAGTCCTTAGTACATCTGGGAATTGTCAAGAAAAAACAAACAAGTTAGCTCTTAGCTTTAACAAAGCATCAAGTGAGGTAGTAAATGATTTGGGGAAGCAACTTCCAAATGCAAGCTACAGATTTGGAGATGCTTATGATGTGGTTAATGATGTAATTAGCAACCCCAGCAAGTATGGATTCCAAAATGCAGACTCACCATGTTGCTCATTTGGGAGGATTAGACCAGCTCTTACATGTATACCAGCATCAACATTGTGCAAAGATAGAAGCAAGTACGTATTTTGGGATGAGTATCATCCATCAGACAAAGCTAATGAACTAATTGCCACTGAACTCATCAAGAAGTTTGGGTTTAAACGTGTTGATCAAGCAGAAACTCCTTCACCATCACCAGAGGTTGCTCCATCTCCTTCAGATGATTAA
Protein sequence

>Msa0448950

MVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDIGNGLPNGRFSNGRTVADIIGDNMGLPRPPAFLDPSLSEDVILENGVNYASGGGGILNETGSYFIQRFSLYKQIELFQGTQELIRSKIGKVEAEKFFLEARYVVALGSNDFINNYLMPLYSDSWTYNDETFIDYLVGTLQEQLKVLHSLGARQLMVFGLGPMGCIPLQRVLSTSGNCQEKTNKLALSFNKASSEVVNDLGKQLPNASYRFGDAYDVVNDVISNPSKYGFQNADSPCCSFGRIRPALTCIPASTLCKDRSKYVFWDEYHPSDKANELIATELIKKFGFKRVDQAETPSPSPEVAPSPSDD*