AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130610 MtrunA17_Chr1g0198931 97.644 679 16 0 1 679 1 679 0.0 1375
Msa0130610 MtrunA17_Chr5g0408061 60.984 610 218 6 71 676 42 635 0.0 744
Msa0130610 MtrunA17_Chr8g0359931 52.769 614 269 9 73 681 34 631 0.0 627
Msa0130610 MtrunA17_Chr1g0200651 50.904 664 285 13 42 676 14 665 0.0 610
Msa0130610 MtrunA17_Chr1g0176441 45.814 657 299 12 41 676 117 737 0.0 568
Msa0130610 MtrunA17_Chr1g0176451 47.463 611 282 9 76 676 1 582 0.0 561
Msa0130610 MtrunA17_Chr7g0267971 46.549 623 283 11 73 676 135 726 0.0 541
Msa0130610 MtrunA17_Chr3g0102731 44.301 544 273 8 73 596 54 587 6.62e-147 440
Msa0130610 MtrunA17_Chr5g0446901 43.407 546 280 8 73 596 64 602 3.29e-143 431
Msa0130610 MtrunA17_Chr2g0318061 55.330 394 158 6 74 466 1 377 3.93e-142 420
Msa0130610 MtrunA17_Chr1g0208391 30.732 615 378 14 42 640 46 628 2.25e-84 281
Msa0130610 MtrunA17_Chr2g0318071 55.947 227 96 3 458 681 12 237 7.66e-81 256
Msa0130610 MtrunA17_Chr1g0213091 30.941 627 375 19 45 624 44 659 6.51e-76 259
Msa0130610 MtrunA17_Chr7g0263351 30.703 583 367 13 73 626 82 656 7.10e-74 253
Msa0130610 MtrunA17_Chr4g0039251 31.528 517 309 11 104 594 90 587 6.13e-70 242
Msa0130610 MtrunA17_Chr6g0477811 28.903 647 374 19 76 679 47 650 4.22e-68 236
Msa0130610 MtrunA17_Chr4g0050251 29.118 601 383 19 104 679 70 652 3.98e-67 233
Msa0130610 MtrunA17_Chr4g0039261 30.882 544 316 15 104 613 48 565 1.96e-66 231
Msa0130610 MtrunA17_Chr4g0050261 28.438 640 378 18 104 679 70 693 4.07e-65 229
Msa0130610 MtrunA17_Chr2g0316301 28.660 642 390 19 62 675 26 627 5.51e-65 226
Msa0130610 MtrunA17_Chr4g0050291 29.670 637 384 23 72 676 24 628 3.33e-63 222
Msa0130610 MtrunA17_Chr4g0065231 31.250 592 352 19 107 675 75 634 5.49e-63 221
Msa0130610 MtrunA17_Chr1g0171351 27.608 623 397 17 10 608 797 1389 9.38e-63 227
Msa0130610 MtrunA17_Chr1g0171351 27.474 586 343 20 102 632 171 729 6.49e-43 167
Msa0130610 MtrunA17_Chr4g0050221 29.716 599 370 19 98 670 25 598 4.66e-61 215
Msa0130610 MtrunA17_Chr1g0148841 29.239 578 365 14 66 626 842 1392 4.82e-61 222
Msa0130610 MtrunA17_Chr1g0148841 28.295 569 340 17 107 627 166 714 8.17e-38 151
Msa0130610 MtrunA17_Chr1g0199471 32.649 536 299 19 69 570 493 1000 5.35e-60 218
Msa0130610 MtrunA17_Chr7g0265991 27.411 591 366 15 49 608 7 565 8.57e-60 212
Msa0130610 MtrunA17_Chr3g0104621 30.245 572 335 21 66 607 729 1266 1.83e-59 217
Msa0130610 MtrunA17_Chr3g0104621 29.049 568 324 19 86 595 28 574 6.49e-42 164
Msa0130610 MtrunA17_Chr8g0384391 27.751 627 394 16 81 676 36 634 1.97e-59 211
Msa0130610 MtrunA17_Chr7g0262231 28.498 586 353 18 66 623 848 1395 2.14e-58 214
Msa0130610 MtrunA17_Chr7g0262231 26.753 542 326 18 107 597 162 683 2.25e-42 166
Msa0130610 MtrunA17_Chr7g0262251 27.795 662 403 23 66 684 792 1421 4.38e-58 213
Msa0130610 MtrunA17_Chr7g0262251 27.323 538 346 16 107 615 175 696 7.30e-42 164
Msa0130610 MtrunA17_Chr8g0340651 27.023 655 408 21 5 627 806 1422 8.98e-58 212
Msa0130610 MtrunA17_Chr8g0340651 27.334 589 344 24 99 632 172 731 1.45e-38 154
Msa0130610 MtrunA17_Chr1g0148811 28.720 578 368 15 66 626 819 1369 6.88e-57 209
Msa0130610 MtrunA17_Chr1g0148811 27.835 582 326 24 107 627 154 702 1.52e-32 135
Msa0130610 MtrunA17_Chr1g0202431 28.976 635 386 19 68 675 5 601 9.36e-57 203
Msa0130610 MtrunA17_Chr2g0332221 27.986 561 361 15 66 611 820 1352 4.17e-56 207
Msa0130610 MtrunA17_Chr2g0332221 26.568 542 327 16 107 597 167 688 1.16e-41 163
Msa0130610 MtrunA17_Chr7g0262241 28.975 566 352 17 66 612 844 1378 4.22e-56 207
Msa0130610 MtrunA17_Chr7g0262241 26.786 560 339 18 107 615 162 701 1.98e-40 159
Msa0130610 MtrunA17_Chr7g0265981 27.243 613 385 17 31 617 810 1387 1.26e-55 206
Msa0130610 MtrunA17_Chr7g0265981 26.232 568 342 18 97 609 174 719 1.18e-31 132
Msa0130610 MtrunA17_Chr2g0332241 27.199 614 395 19 16 611 774 1353 1.32e-55 206
Msa0130610 MtrunA17_Chr2g0332241 25.535 607 368 18 42 597 115 688 8.67e-42 164
Msa0130610 MtrunA17_Chr2g0332211 27.807 561 362 15 66 611 904 1436 2.59e-55 205
Msa0130610 MtrunA17_Chr2g0332211 27.194 581 352 19 107 635 248 809 6.42e-42 164
Msa0130610 MtrunA17_Chr1g0198291 27.346 618 398 17 13 608 801 1389 2.92e-55 204
Msa0130610 MtrunA17_Chr1g0198291 28.942 501 275 19 106 550 188 663 3.21e-37 149
Msa0130610 MtrunA17_Chr8g0393191 41.237 291 160 7 76 363 43 325 2.99e-55 202
Msa0130610 MtrunA17_Chr7g0262261 29.167 576 345 19 66 610 768 1311 9.29e-55 203
Msa0130610 MtrunA17_Chr7g0262261 26.643 563 348 16 82 597 110 654 8.17e-46 176
Msa0130610 MtrunA17_Chr4g0003981 27.167 600 391 16 27 608 789 1360 1.13e-54 203
Msa0130610 MtrunA17_Chr4g0003981 32.817 323 165 10 42 328 121 427 2.55e-36 147
Msa0130610 MtrunA17_Chr3g0130331 27.863 585 405 10 104 676 55 634 1.63e-54 197
Msa0130610 MtrunA17_Chr5g0411621 38.957 326 170 10 72 390 17 320 2.15e-54 199
Msa0130610 MtrunA17_Chr7g0265971 27.778 594 347 19 66 617 840 1393 2.97e-54 201
Msa0130610 MtrunA17_Chr7g0265971 25.880 568 344 19 97 609 168 713 1.99e-37 150
Msa0130610 MtrunA17_Chr3g0138261 28.084 616 393 18 66 663 835 1418 5.16e-54 201
Msa0130610 MtrunA17_Chr3g0138261 27.193 570 356 16 81 605 140 695 1.96e-43 169
Msa0130610 MtrunA17_Chr0c20g0493841 27.660 611 387 16 34 623 794 1370 5.58e-54 201
Msa0130610 MtrunA17_Chr0c20g0493841 33.574 277 142 10 107 346 168 439 8.50e-33 136
Msa0130610 MtrunA17_Chr2g0331081 27.652 575 372 15 66 623 856 1403 9.67e-54 200
Msa0130610 MtrunA17_Chr2g0331081 27.350 585 359 22 94 632 168 732 1.14e-36 148
Msa0130610 MtrunA17_Chr7g0261971 28.261 644 389 22 66 677 840 1442 1.14e-52 197
Msa0130610 MtrunA17_Chr7g0261971 27.387 555 342 18 107 615 158 697 2.08e-39 156
Msa0130610 MtrunA17_Chr5g0429871 30.268 522 316 17 31 535 599 1089 1.89e-52 196
Msa0130610 MtrunA17_Chr5g0429871 25.151 497 310 16 147 597 20 500 5.85e-32 133
Msa0130610 MtrunA17_Chr7g0262221 27.645 586 344 20 66 612 819 1363 1.27e-51 194
Msa0130610 MtrunA17_Chr7g0262221 27.725 523 327 16 107 597 163 666 3.88e-44 171
Msa0130610 MtrunA17_Chr7g0261951 27.866 567 356 17 66 612 844 1377 2.99e-51 192
Msa0130610 MtrunA17_Chr7g0261951 27.629 561 333 17 107 615 162 701 2.36e-38 153
Msa0130610 MtrunA17_Chr7g0264441 39.130 322 181 8 105 420 277 589 8.80e-51 190
Msa0130610 MtrunA17_Chr4g0062871 28.342 561 348 20 66 604 809 1337 9.09e-51 191
Msa0130610 MtrunA17_Chr4g0062871 28.980 559 322 19 99 604 144 680 4.89e-34 140
Msa0130610 MtrunA17_Chr1g0180971 41.135 282 144 8 72 349 392 655 1.29e-50 188
Msa0130610 MtrunA17_Chr4g0003971 28.546 564 356 17 66 612 790 1323 1.69e-50 190
Msa0130610 MtrunA17_Chr4g0003971 28.265 559 320 21 94 597 150 682 2.60e-42 165
Msa0130610 MtrunA17_Chr7g0261981 27.326 688 431 23 3 677 771 1402 7.17e-50 188
Msa0130610 MtrunA17_Chr7g0261981 27.807 561 332 19 107 615 162 701 6.13e-40 158
Msa0130610 MtrunA17_Chr4g0004021 29.741 464 286 14 66 515 828 1265 6.17e-49 185
Msa0130610 MtrunA17_Chr4g0004021 28.378 518 316 17 107 581 171 676 6.00e-36 145
Msa0130610 MtrunA17_Chr4g0028621 43.463 283 136 9 72 349 486 749 4.06e-48 182
Msa0130610 MtrunA17_Chr7g0265961 25.719 556 358 14 66 608 796 1309 6.30e-48 182
Msa0130610 MtrunA17_Chr7g0265961 26.984 567 339 20 97 609 172 717 2.72e-39 156
Msa0130610 MtrunA17_Chr2g0327241 24.928 690 454 19 15 675 46 700 1.73e-46 176
Msa0130610 MtrunA17_Chr4g0039231 35.762 302 157 9 146 427 1 285 2.72e-44 168
Msa0130610 MtrunA17_Chr7g0262321 35.664 286 167 8 70 346 535 812 2.15e-43 168
Msa0130610 MtrunA17_Chr7g0262321 27.889 398 241 17 212 589 24 395 4.17e-22 102
Msa0130610 MtrunA17_Chr4g0026731 26.590 519 336 17 140 623 12 520 1.10e-42 163
Msa0130610 MtrunA17_Chr4g0050201 27.469 557 342 19 145 670 2 527 2.75e-40 155
Msa0130610 MtrunA17_Chr6g0472481 38.889 198 117 3 107 302 13 208 3.88e-37 139
Msa0130610 MtrunA17_Chr7g0266001 26.808 567 340 21 97 609 53 598 5.04e-37 147
Msa0130610 MtrunA17_Chr4g0069211 35.294 272 161 7 34 302 782 1041 6.62e-37 148
Msa0130610 MtrunA17_Chr4g0069211 30.325 277 140 10 107 346 167 427 4.77e-25 111
Msa0130610 MtrunA17_Chr3g0093331 40.580 207 115 5 127 328 18 221 6.03e-35 133
Msa0130610 MtrunA17_Chr4g0047831 62.500 80 30 0 228 307 5 84 4.62e-26 102
Msa0130610 MtrunA17_Chr7g0215001 24.250 400 234 14 255 612 1 373 9.91e-21 94.7
Msa0130610 MtrunA17_Chr7g0249091 29.185 233 131 7 105 314 98 319 2.97e-18 87.0
Msa0130610 MtrunA17_Chr5g0433051 32.599 227 128 10 105 318 479 693 5.92e-18 88.2
Msa0130610 MtrunA17_Chr1g0178481 33.014 209 122 9 107 308 396 593 9.50e-17 84.3
Msa0130610 MtrunA17_Chr7g0238421 33.333 147 81 4 117 259 14 147 3.80e-16 78.6
Msa0130610 MtrunA17_Chr7g0227391 28.704 216 128 9 116 320 451 651 7.85e-16 81.3
Msa0130610 MtrunA17_Chr4g0061601 28.216 241 154 9 101 334 398 626 2.08e-15 80.1
Msa0130610 MtrunA17_Chr5g0433071 30.263 228 132 9 105 318 481 695 4.04e-15 79.3
Msa0130610 MtrunA17_Chr3g0093041 27.984 243 154 8 119 356 207 433 1.49e-14 77.4
Msa0130610 MtrunA17_Chr6g0453051 27.962 211 134 8 116 320 1034 1232 1.78e-14 77.4
Msa0130610 MtrunA17_Chr6g0451911 29.630 216 131 8 107 314 1032 1234 1.92e-14 77.4
Msa0130610 MtrunA17_Chr8g0390471 39.175 97 57 2 107 201 5 101 3.63e-14 69.3
Msa0130610 MtrunA17_Chr5g0410921 30.435 207 122 9 117 315 383 575 5.27e-14 75.9
Msa0130610 MtrunA17_Chr5g0410921 28.095 210 133 8 118 321 1017 1214 8.59e-13 72.0
Msa0130610 MtrunA17_Chr7g0257341 27.604 192 125 4 119 308 584 763 1.20e-13 75.1
Msa0130610 MtrunA17_Chr7g0257341 26.667 210 136 8 85 289 1458 1654 6.47e-11 66.2
Msa0130610 MtrunA17_Chr3g0123411 27.027 222 142 9 107 321 922 1130 2.93e-13 73.6
Msa0130610 MtrunA17_Chr3g0128381 25.541 231 148 8 104 321 404 623 2.98e-13 73.2
Msa0130610 MtrunA17_Chr6g0452171 27.830 212 141 6 107 314 1037 1240 3.41e-13 73.6
Msa0130610 MtrunA17_Chr6g0452141 29.412 221 120 9 107 308 1034 1237 4.52e-13 73.2
Msa0130610 MtrunA17_Chr7g0264631 29.717 212 123 9 107 308 443 638 5.63e-13 72.8
Msa0130610 MtrunA17_Chr6g0474071 30.612 196 118 7 106 293 229 414 5.73e-13 71.6
Msa0130610 MtrunA17_Chr8g0344651 27.160 243 144 11 107 338 615 835 5.84e-13 72.8
Msa0130610 MtrunA17_Chr6g0452041 27.619 210 138 6 107 308 1036 1239 6.11e-13 72.8
Msa0130610 MtrunA17_Chr3g0102741 37.647 85 52 1 593 676 2 86 6.73e-13 65.1
Msa0130610 MtrunA17_Chr3g0132711 24.490 245 168 6 119 359 221 452 7.17e-13 72.0
Msa0130610 MtrunA17_Chr6g0451881 28.000 200 130 6 117 308 1034 1227 8.50e-13 72.0
Msa0130610 MtrunA17_Chr6g0452061 27.358 212 142 6 107 314 546 749 1.20e-12 71.2
Msa0130610 MtrunA17_Chr6g0452071 27.619 210 138 6 107 308 230 433 1.82e-12 70.1
Msa0130610 MtrunA17_Chr1g0180601 30.348 201 114 9 118 308 427 611 2.22e-12 70.9
Msa0130610 MtrunA17_Chr7g0233901 27.556 225 140 9 107 321 1012 1223 4.48e-12 69.7
Msa0130610 MtrunA17_Chr6g0452111 26.887 212 143 6 107 314 1035 1238 4.79e-12 69.7
Msa0130610 MtrunA17_Chr4g0041871 24.528 265 179 10 64 320 979 1230 1.44e-11 68.2
Msa0130610 MtrunA17_Chr4g0060421 26.667 195 127 6 118 308 163 345 1.73e-11 67.0
Msa0130610 MtrunA17_Chr3g0093091 26.667 195 127 6 118 308 648 830 2.18e-11 67.4
Msa0130610 MtrunA17_Chr1g0156821 26.852 216 140 8 117 326 1021 1224 2.46e-11 67.4
Msa0130610 MtrunA17_Chr2g0285191 27.434 226 136 10 106 320 414 622 2.80e-11 67.4
Msa0130610 MtrunA17_Chr6g0472531 26.549 226 125 10 100 314 581 776 2.87e-11 67.4
Msa0130610 MtrunA17_Chr4g0060401 26.291 213 140 7 81 289 606 805 3.37e-11 67.0
Msa0130610 MtrunA17_Chr4g0060431 26.238 202 133 6 118 315 628 817 3.77e-11 66.6
Msa0130610 MtrunA17_Chr4g0060471 24.561 228 153 7 123 346 1 213 4.17e-11 64.3
Msa0130610 MtrunA17_Chr6g0486841 28.095 210 137 7 116 321 385 584 5.63e-11 66.2
Msa0130610 MtrunA17_Chr2g0285311 26.512 215 140 8 106 314 385 587 6.66e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130610 AT3G25620.2 66.179 683 211 9 1 676 1 670 0.0 855
Msa0130610 AT1G31770.1 57.364 645 262 8 31 675 11 642 0.0 741
Msa0130610 AT4G27420.1 53.674 626 268 8 64 681 25 636 0.0 639
Msa0130610 AT5G06530.2 47.512 623 277 11 73 676 154 745 0.0 583
Msa0130610 AT5G06530.1 47.512 623 277 11 73 676 154 745 0.0 583
Msa0130610 AT1G71960.1 47.939 655 295 13 54 676 18 658 0.0 564
Msa0130610 AT3G25620.1 61.734 473 161 9 1 466 1 460 0.0 550
Msa0130610 AT5G06530.3 48.463 553 252 8 73 607 154 691 0.0 531
Msa0130610 AT5G06530.4 50.000 502 227 8 124 607 1 496 1.05e-171 500
Msa0130610 AT3G13220.1 41.988 674 346 12 32 682 32 683 2.42e-171 506
Msa0130610 AT2G01320.3 31.181 635 377 18 70 681 64 661 4.03e-91 299
Msa0130610 AT2G01320.1 31.181 635 377 18 70 681 64 661 4.18e-91 299
Msa0130610 AT2G01320.4 31.181 635 377 18 70 681 64 661 4.18e-91 299
Msa0130610 AT2G01320.2 31.181 635 377 18 70 681 64 661 4.56e-91 299
Msa0130610 AT2G01320.8 32.027 587 346 16 70 634 64 619 6.28e-91 296
Msa0130610 AT2G01320.5 32.027 587 346 16 70 634 64 619 6.28e-91 296
Msa0130610 AT2G01320.7 34.221 488 275 14 70 542 64 520 8.09e-82 269
Msa0130610 AT2G01320.6 34.221 488 275 14 70 542 64 520 8.09e-82 269
Msa0130610 AT3G55100.1 32.513 569 345 14 73 623 19 566 2.27e-78 263
Msa0130610 AT3G55100.2 32.513 569 345 14 73 623 19 566 2.27e-78 263
Msa0130610 AT2G37360.1 32.686 566 351 16 73 616 95 652 2.50e-76 260
Msa0130610 AT3G55110.1 31.972 563 347 14 73 616 60 605 1.54e-73 251
Msa0130610 AT3G55090.1 30.822 584 372 15 73 631 70 646 1.66e-73 252
Msa0130610 AT5G13580.1 31.952 579 350 13 68 616 60 624 2.68e-73 251
Msa0130610 AT3G55130.1 31.199 609 364 20 34 616 43 622 2.51e-72 249
Msa0130610 AT3G21090.1 30.177 623 355 21 104 679 42 631 7.92e-72 246
Msa0130610 AT2G39350.1 31.525 590 358 15 73 624 64 645 1.01e-71 247
Msa0130610 AT3G53510.1 32.734 556 352 12 76 616 88 636 8.74e-71 244
Msa0130610 AT1G17840.1 30.944 572 330 17 76 616 50 587 5.07e-69 239
Msa0130610 AT1G51460.1 29.402 619 369 17 104 676 27 623 8.38e-69 238
Msa0130610 AT1G51500.1 29.527 613 374 20 104 679 41 632 2.12e-68 237
Msa0130610 AT2G13610.1 30.581 654 407 21 43 676 10 636 2.76e-67 233
Msa0130610 AT2G37280.3 28.571 630 398 18 10 623 788 1381 1.92e-66 238
Msa0130610 AT2G37280.3 25.086 582 331 18 106 604 153 712 1.30e-34 142
Msa0130610 AT2G37280.1 28.571 630 398 18 10 623 759 1352 1.97e-66 238
Msa0130610 AT2G37280.1 26.582 553 330 18 106 604 153 683 1.61e-38 154
Msa0130610 AT1G53270.1 30.596 621 369 21 76 685 19 588 2.12e-66 229
Msa0130610 AT2G37280.4 28.685 631 396 19 10 623 601 1194 2.69e-66 238
Msa0130610 AT2G37280.4 25.974 539 323 18 120 604 9 525 9.92e-34 139
Msa0130610 AT3G53480.1 29.965 574 360 17 66 623 842 1389 7.77e-66 236
Msa0130610 AT3G53480.1 28.265 559 326 25 100 607 184 718 3.94e-36 147
Msa0130610 AT2G37280.2 28.904 602 378 17 10 597 759 1324 1.13e-63 230
Msa0130610 AT2G37280.2 26.944 553 328 19 106 604 153 683 1.61e-38 154
Msa0130610 AT4G15236.1 29.076 595 372 14 46 623 768 1329 8.76e-63 228
Msa0130610 AT4G15236.1 28.164 561 323 22 99 604 147 682 6.62e-44 171
Msa0130610 AT4G15233.7 29.298 570 353 14 71 623 777 1313 2.91e-62 226
Msa0130610 AT4G15233.7 28.519 540 316 21 107 604 155 666 6.51e-44 171
Msa0130610 AT4G15233.8 29.298 570 353 14 71 623 786 1322 2.92e-62 226
Msa0130610 AT4G15233.8 27.240 558 309 22 107 604 155 675 6.83e-38 152
Msa0130610 AT4G15233.1 29.298 570 353 14 71 623 795 1331 2.94e-62 226
Msa0130610 AT4G15233.1 27.957 558 314 21 107 604 155 684 3.48e-43 168
Msa0130610 AT4G15233.3 29.032 589 368 14 71 642 733 1288 3.74e-62 226
Msa0130610 AT4G15233.3 27.949 551 323 19 107 604 93 622 4.11e-43 168
Msa0130610 AT4G15233.6 29.032 589 368 14 71 642 733 1288 3.74e-62 226
Msa0130610 AT4G15233.6 27.949 551 323 19 107 604 93 622 4.11e-43 168
Msa0130610 AT3G16340.1 30.108 558 342 18 66 604 806 1334 1.67e-61 224
Msa0130610 AT3G16340.1 28.548 599 334 24 94 632 151 715 3.18e-41 162
Msa0130610 AT3G16340.2 29.636 577 358 18 66 623 801 1348 1.79e-61 224
Msa0130610 AT3G16340.2 27.926 598 334 23 94 632 151 710 1.07e-38 154
Msa0130610 AT1G59870.1 28.596 577 364 16 66 623 859 1406 7.58e-61 222
Msa0130610 AT1G59870.1 26.878 599 344 23 94 632 175 739 6.15e-36 146
Msa0130610 AT4G15233.2 29.286 560 343 14 71 610 795 1321 8.01e-61 221
Msa0130610 AT4G15233.2 27.957 558 314 21 107 604 155 684 2.78e-43 169
Msa0130610 AT1G15210.1 29.167 576 362 18 66 623 832 1379 9.26e-61 221
Msa0130610 AT1G15210.1 26.174 596 352 23 94 632 173 737 5.76e-34 140
Msa0130610 AT4G15230.3 28.381 599 379 13 41 623 775 1339 4.72e-60 219
Msa0130610 AT4G15230.3 28.265 559 325 21 99 604 150 685 4.50e-45 174
Msa0130610 AT4G15230.1 28.381 599 379 13 41 623 775 1339 4.72e-60 219
Msa0130610 AT4G15230.1 28.265 559 325 21 99 604 150 685 4.50e-45 174
Msa0130610 AT4G15230.4 28.381 599 379 13 41 623 696 1260 5.43e-60 219
Msa0130610 AT4G15230.4 28.265 559 325 21 99 604 71 606 4.40e-45 174
Msa0130610 AT1G53390.1 31.365 542 283 18 76 570 507 1006 1.43e-59 217
Msa0130610 AT5G19410.1 29.452 584 357 15 107 672 66 612 3.03e-59 211
Msa0130610 AT5G19410.2 29.452 584 357 15 107 672 75 621 3.91e-59 211
Msa0130610 AT2G37010.2 30.627 542 322 19 105 615 498 1016 2.69e-58 213
Msa0130610 AT2G37010.1 30.627 542 322 19 105 615 498 1016 2.69e-58 213
Msa0130610 AT2G29940.1 29.558 565 342 20 66 607 818 1349 4.84e-58 213
Msa0130610 AT2G29940.1 28.897 571 330 19 99 615 167 715 7.96e-46 176
Msa0130610 AT4G15215.1 29.147 621 380 17 19 623 753 1329 8.58e-58 213
Msa0130610 AT4G15215.1 27.273 561 321 21 99 604 147 675 9.43e-41 161
Msa0130610 AT4G15215.8 29.147 621 380 17 19 623 750 1326 9.22e-58 213
Msa0130610 AT4G15215.8 27.273 561 321 21 99 604 144 672 1.03e-40 160
Msa0130610 AT4G15215.10 29.147 621 380 17 19 623 750 1326 9.22e-58 213
Msa0130610 AT4G15215.10 27.273 561 321 21 99 604 144 672 1.03e-40 160
Msa0130610 AT4G15215.6 29.147 621 380 17 19 623 750 1326 9.22e-58 213
Msa0130610 AT4G15215.6 27.273 561 321 21 99 604 144 672 1.03e-40 160
Msa0130610 AT4G15215.7 29.147 621 380 17 19 623 750 1326 9.22e-58 213
Msa0130610 AT4G15215.7 27.273 561 321 21 99 604 144 672 1.03e-40 160
Msa0130610 AT4G15215.11 29.147 621 380 17 19 623 760 1336 1.01e-57 212
Msa0130610 AT4G15215.11 27.758 562 324 22 99 604 147 682 6.50e-43 167
Msa0130610 AT4G15215.9 29.147 621 380 17 19 623 757 1333 1.05e-57 212
Msa0130610 AT4G15215.9 27.758 562 324 22 99 604 144 679 6.55e-43 167
Msa0130610 AT4G15215.4 29.147 621 380 17 19 623 757 1333 1.05e-57 212
Msa0130610 AT4G15215.4 27.758 562 324 22 99 604 144 679 6.55e-43 167
Msa0130610 AT4G15215.5 29.147 621 380 17 19 623 757 1333 1.05e-57 212
Msa0130610 AT4G15215.5 27.758 562 324 22 99 604 144 679 6.55e-43 167
Msa0130610 AT4G15215.3 29.147 621 380 17 19 623 757 1333 1.05e-57 212
Msa0130610 AT4G15215.3 27.758 562 324 22 99 604 144 679 6.55e-43 167
Msa0130610 AT4G15215.2 29.147 621 380 17 19 623 757 1333 1.05e-57 212
Msa0130610 AT4G15215.2 27.758 562 324 22 99 604 144 679 6.55e-43 167
Msa0130610 AT1G66950.1 27.482 564 360 15 66 611 845 1377 8.78e-57 209
Msa0130610 AT1G66950.1 27.387 555 334 19 106 609 189 725 2.08e-40 160
Msa0130610 AT4G25750.1 29.195 596 338 16 107 675 30 568 4.10e-56 201
Msa0130610 AT4G15230.2 28.546 571 360 13 41 597 775 1311 4.95e-56 207
Msa0130610 AT4G15230.2 28.265 559 325 21 99 604 150 685 4.61e-45 174
Msa0130610 AT4G15233.5 28.817 524 337 12 116 623 685 1188 4.98e-56 207
Msa0130610 AT4G15233.5 28.518 533 325 19 107 604 93 604 9.47e-44 170
Msa0130610 AT4G15233.4 28.817 524 337 12 116 623 685 1188 4.98e-56 207
Msa0130610 AT4G15233.4 28.518 533 325 19 107 604 93 604 9.47e-44 170
Msa0130610 AT1G15520.1 29.027 565 344 20 66 608 817 1346 1.18e-54 203
Msa0130610 AT1G15520.1 27.087 539 328 19 107 597 169 690 5.19e-36 146
Msa0130610 AT3G30842.1 28.826 562 345 18 71 610 816 1344 3.47e-54 202
Msa0130610 AT3G30842.1 27.574 544 319 22 107 597 161 682 8.97e-41 161
Msa0130610 AT2G26910.1 28.978 597 363 23 66 636 810 1371 4.66e-54 201
Msa0130610 AT2G26910.1 28.214 560 327 18 98 604 143 680 1.14e-37 151
Msa0130610 AT2G36380.1 28.000 575 363 18 66 621 844 1386 7.43e-54 201
Msa0130610 AT2G36380.1 27.474 586 351 22 99 634 182 743 3.80e-41 162
Msa0130610 AT5G52860.1 28.640 625 383 17 67 675 3 580 1.28e-51 189
Msa0130610 AT5G60740.1 31.852 540 303 17 72 572 494 1007 1.03e-49 188
Msa0130610 AT2G28070.2 27.169 703 435 27 15 681 52 713 3.34e-48 181
Msa0130610 AT2G28070.1 27.169 703 435 27 15 681 52 713 3.34e-48 181
Msa0130610 AT1G15520.2 30.085 472 274 19 66 515 817 1254 1.06e-47 182
Msa0130610 AT1G15520.2 27.087 539 328 19 107 597 169 690 1.81e-36 147
Msa0130610 AT5G58270.1 31.944 216 129 8 105 314 492 695 5.72e-18 89.0
Msa0130610 AT3G28390.1 30.198 202 129 6 118 315 1008 1201 9.32e-16 82.0
Msa0130610 AT3G28390.1 24.199 281 174 9 118 392 375 622 1.68e-11 68.6
Msa0130610 AT5G39040.1 31.532 222 119 9 101 308 407 609 3.37e-15 79.7
Msa0130610 AT4G25960.1 31.280 211 123 9 118 320 429 625 6.29e-15 79.3
Msa0130610 AT4G25960.1 27.230 213 137 8 114 320 1054 1254 6.90e-12 69.7
Msa0130610 AT4G25450.3 29.487 234 145 8 106 331 317 538 7.34e-15 78.6
Msa0130610 AT4G25450.1 29.487 234 145 8 106 331 486 707 7.58e-15 79.0
Msa0130610 AT4G28620.1 29.167 216 135 8 105 314 452 655 1.06e-14 78.2
Msa0130610 AT1G10680.1 30.455 220 135 8 107 320 378 585 1.28e-14 78.6
Msa0130610 AT1G10680.1 30.392 204 124 8 118 315 1010 1201 6.61e-13 72.8
Msa0130610 AT1G10680.2 30.000 240 144 9 93 320 358 585 1.30e-14 78.6
Msa0130610 AT3G28860.1 28.436 211 133 8 116 320 1036 1234 1.84e-14 77.8
Msa0130610 AT4G28630.1 28.241 216 137 8 105 314 450 653 2.27e-14 77.4
Msa0130610 AT5G61690.2 24.055 291 184 11 119 393 559 828 2.64e-14 77.4
Msa0130610 AT3G47730.1 24.042 287 195 8 86 368 526 793 4.05e-14 76.6
Msa0130610 AT1G27940.1 30.303 198 122 8 116 308 397 583 1.06e-13 75.5
Msa0130610 AT1G27940.1 27.094 203 134 6 117 315 1031 1223 3.21e-12 70.9
Msa0130610 AT1G27940.2 30.303 198 122 8 116 308 183 369 1.20e-13 75.1
Msa0130610 AT1G27940.2 27.228 202 133 6 118 315 818 1009 3.51e-12 70.5
Msa0130610 AT3G47740.1 23.443 273 194 6 39 308 563 823 1.60e-13 74.7
Msa0130610 AT1G65410.1 26.180 233 138 7 105 314 97 318 1.95e-13 72.8
Msa0130610 AT1G28010.1 29.630 216 128 9 118 324 400 600 2.46e-13 74.3
Msa0130610 AT3G28380.1 29.353 201 130 6 118 314 1023 1215 3.10e-13 73.9
Msa0130610 AT3G28380.1 27.317 205 131 8 117 315 386 578 2.56e-11 67.8
Msa0130610 AT5G61730.1 26.339 224 144 8 119 336 550 758 4.54e-13 73.2
Msa0130610 AT5G61730.2 26.339 224 144 8 119 336 560 768 4.81e-13 73.2
Msa0130610 AT5G61690.1 23.711 291 184 11 119 393 559 827 5.29e-13 73.2
Msa0130610 AT3G47780.1 25.217 230 156 7 82 308 610 826 8.20e-13 72.4
Msa0130610 AT2G36910.1 30.047 213 123 9 106 308 384 580 1.63e-12 71.6
Msa0130610 AT3G47750.1 22.628 274 191 8 48 315 577 835 1.90e-12 71.2
Msa0130610 AT5G61700.2 25.641 195 133 4 98 289 606 791 2.78e-12 70.9
Msa0130610 AT5G61700.4 25.641 195 133 4 98 289 606 791 2.78e-12 70.9
Msa0130610 AT3G47790.1 24.215 223 137 5 98 308 597 799 2.95e-12 70.9
Msa0130610 AT2G41700.2 31.613 155 90 5 119 269 509 651 3.45e-12 70.9
Msa0130610 AT2G41700.2 28.342 187 118 7 108 289 1432 1607 1.37e-11 68.9
Msa0130610 AT2G41700.1 31.613 155 90 5 119 269 579 721 3.52e-12 70.9
Msa0130610 AT2G41700.1 28.342 187 118 7 108 289 1474 1649 1.48e-11 68.6
Msa0130610 AT1G70610.2 26.244 221 136 9 107 315 291 496 6.52e-12 68.9
Msa0130610 AT3G28345.1 30.732 205 122 9 118 314 1023 1215 9.40e-12 69.3
Msa0130610 AT3G28345.1 26.667 210 136 8 118 321 387 584 2.37e-11 67.8
Msa0130610 AT3G28360.1 27.358 212 142 6 107 314 998 1201 1.08e-11 68.9
Msa0130610 AT5G61700.1 24.766 214 147 6 98 308 606 808 1.28e-11 68.6
Msa0130610 AT1G70610.1 26.244 221 136 9 107 315 472 677 1.36e-11 68.2
Msa0130610 AT3G47790.3 24.752 202 122 4 98 287 597 780 2.52e-11 67.4
Msa0130610 AT3G47790.2 24.752 202 122 4 98 287 478 661 2.96e-11 67.4
Msa0130610 AT3G28415.1 27.941 204 129 8 118 315 366 557 4.44e-11 67.0
Msa0130610 AT3G28415.2 27.941 204 129 8 118 315 374 565 4.52e-11 67.0
Msa0130610 AT3G47760.1 24.686 239 158 9 83 315 572 794 7.08e-11 66.2
Msa0130610 AT5G61740.2 25.773 194 130 6 118 308 584 766 7.14e-11 66.2
Msa0130610 AT5G61740.3 25.773 194 130 6 118 308 479 661 7.32e-11 66.2
Msa0130610 AT5G61740.1 25.773 194 130 6 118 308 618 800 8.10e-11 65.9
Msa0130610 AT3G47760.3 24.686 239 158 9 83 315 612 834 8.56e-11 65.9
Msa0130610 AT3G47760.2 24.686 239 158 9 83 315 582 804 9.69e-11 65.9
Msa0130610 AT4G18050.1 28.440 218 120 10 118 320 383 579 9.77e-11 65.9

Find 217 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTCTTCTCCATCTTT+TGG 0.148365 1_3:+61030724 Msa0130610:CDS
AATTTAGTCCAAATTCTTTA+TGG 0.155481 1_3:+61031708 Msa0130610:three_prime_UTR
GAGGGAATTCAAATACTTTA+AGG 0.166291 1_3:+61031949 Msa0130610:three_prime_UTR
AATTCAAGGTTCTGCTTAAA+AGG 0.168055 1_3:+61030330 Msa0130610:CDS
GTGATTTGATTCGAATTAAA+AGG 0.169086 1_3:+61031620 Msa0130610:three_prime_UTR
TTTAAAGAATTTAAAATTCT+AGG 0.230070 1_3:-61031979 None:intergenic
CATTAAGTCCTTAGGCATTT+AGG 0.238994 1_3:-61031356 None:intergenic
TAACAAAGTTAAACCAAGTT+TGG 0.258097 1_3:+61027465 Msa0130610:CDS
CTAAATGCCTAAGGACTTAA+TGG 0.273442 1_3:+61031357 Msa0130610:CDS
TGGATCCGTTGGGTTTGTTC+CGG 0.291288 1_3:+61028940 Msa0130610:CDS
TCGGGTTCACCAACATTTCT+TGG 0.309741 1_3:-61028700 None:intergenic
CTCTCCGTTCTGTTTGTGTT+GGG 0.321758 1_3:-61027406 None:intergenic
TCTCCGGTGGGGAGAGAAAA+AGG 0.331729 1_3:+61028666 Msa0130610:CDS
AGCCTTGTTTCTTCATAGTT+AGG 0.342213 1_3:+61027269 Msa0130610:five_prime_UTR
GTGTTGGGTGAGTTGTTATT+TGG 0.343433 1_3:-61027391 None:intergenic
TCCGTTGTATGTTATTGTTC+CGG 0.343808 1_3:-61028411 None:intergenic
TGTGTTTGGATGAGGTAATT+TGG 0.346586 1_3:-61032006 None:intergenic
TTTCTCCTTGATCTTGCTAA+TGG 0.346709 1_3:+61028989 Msa0130610:CDS
GCCCTAGCCGGAAGACTTGC+CGG 0.348608 1_3:+61028380 Msa0130610:CDS
GTACTTACTTTGAGTGTAAC+TGG 0.353627 1_3:-61027571 None:intergenic
TTTCCCTGCCGTAAAATGTT+TGG 0.357311 1_3:+61031241 Msa0130610:CDS
TCAAATGAACTAACTCTAAC+TGG 0.358651 1_3:-61031747 None:intergenic
TTCTTCACGCGTAAGTGTCT+TGG 0.363853 1_3:-61028549 None:intergenic
TTGAGGTGAATTCCATTGTT+TGG 0.365263 1_3:+61031885 Msa0130610:three_prime_UTR
GGATCCGTTGGGTTTGTTCC+GGG 0.369435 1_3:+61028941 Msa0130610:CDS
GTAGAGAAGGGTTGCATTGT+AGG 0.372689 1_3:+61031210 Msa0130610:CDS
TCCTGCATGAAACGCAAAAT+AGG 0.375269 1_3:+61028446 Msa0130610:CDS
ATCATATATTAGAGTGTGTT+TGG 0.380736 1_3:+61031812 Msa0130610:intron
TGGATGAGAAGGAATATTAA+TGG 0.381396 1_3:-61027503 None:intergenic
TTCCGGCTAGGGCCGTTAGT+AGG 0.384985 1_3:-61028370 None:intergenic
ATGCATTTACTCAGTGTGTT+TGG 0.390083 1_3:-61032020 None:intergenic
ACTGCCTCAGTTAAATTAAG+AGG 0.392645 1_3:+61031598 Msa0130610:three_prime_UTR
CACGGCTCAACTTATTGTTT+CGG 0.395239 1_3:+61028766 Msa0130610:CDS
ATCCTATACAACCGACTTGA+AGG 0.395418 1_3:-61028842 None:intergenic
CACTCCGGTTGGAGGATGTA+TGG 0.395662 1_3:+61028628 Msa0130610:CDS
TGTAGTTTACCCTCACTTAA+CGG 0.403323 1_3:+61028487 Msa0130610:CDS
TGTTTCGGTTCTTCGAGGTT+TGG 0.404999 1_3:+61028781 Msa0130610:CDS
GACACTTACGCGTGAAGAAA+AGG 0.407846 1_3:+61028553 Msa0130610:CDS
CATTGAAAAGCATGATCAAA+AGG 0.408097 1_3:-61030962 None:intergenic
CTAACTCTAACTGGCACATC+TGG 0.409598 1_3:-61031738 None:intergenic
GGATGAACCGACTTCCGGTT+TGG 0.410736 1_3:+61028736 Msa0130610:CDS
TACTGTTATAAGCTGCTTGT+AGG 0.412477 1_3:+61031155 Msa0130610:CDS
TCCGGCAAGTCTTCCGGCTA+GGG 0.416322 1_3:-61028381 None:intergenic
TCTTCACGCGTAAGTGTCTT+GGG 0.418551 1_3:-61028548 None:intergenic
TTGTCTGTTTCCATTCTCTC+AGG 0.422014 1_3:+61030407 Msa0130610:CDS
GTTCTGGTCTCTCAAGGAAT+AGG 0.424448 1_3:+61030984 Msa0130610:CDS
CCCACCAACTTGTGTTCCAT+TGG 0.424808 1_3:-61030304 None:intergenic
TATATTAGAGTGTGTTTGGA+TGG 0.429929 1_3:+61031816 Msa0130610:intron
CCATTCTCTCAGGACTCCTC+TGG 0.430280 1_3:+61030417 Msa0130610:CDS
GGTCGGGTAATTGATTATCT+TGG 0.430337 1_3:+61028920 Msa0130610:CDS
CAACATAGTATGATGATAGA+TGG 0.433604 1_3:-61030830 None:intergenic
ATTCAAGGTTCTGCTTAAAA+GGG 0.434766 1_3:+61030331 Msa0130610:CDS
TGAGGGAATGTAATGTTATG+AGG 0.434789 1_3:+61031849 Msa0130610:three_prime_UTR
GCTCTCCGTTCTGTTTGTGT+TGG 0.436595 1_3:-61027407 None:intergenic
TTATAGTGGTAATGCGGGTC+GGG 0.436666 1_3:+61028904 Msa0130610:CDS
CCAGAGGAGTCCTGAGAGAA+TGG 0.440248 1_3:-61030417 None:intergenic
GAGTGTTCCGGCACCGTGTA+AGG 0.441193 1_3:-61028610 None:intergenic
GGTGAATTCCATTGTTTGGA+TGG 0.441405 1_3:+61031889 Msa0130610:three_prime_UTR
GCATTGACTATAATGTTTGT+TGG 0.442314 1_3:+61031293 Msa0130610:CDS
TTGTTGCATATTTAGCTTTG+AGG 0.443906 1_3:+61031324 Msa0130610:CDS
ATTGATTATCTTGGATCCGT+TGG 0.444923 1_3:+61028929 Msa0130610:CDS
CTTCGAGGTTTGGCTCGGTC+CGG 0.448611 1_3:+61028791 Msa0130610:CDS
GTATAGGATGTTTGATAAAG+TGG 0.449267 1_3:+61028856 Msa0130610:CDS
TTCCGGCAAGTCTTCCGGCT+AGG 0.449427 1_3:-61028382 None:intergenic
CATATTTAGCTTTGAGGATG+GGG 0.450017 1_3:+61031330 Msa0130610:CDS
GAGGGAATTCAAATACTTTG+AGG 0.450814 1_3:+61031868 Msa0130610:three_prime_UTR
ACTGTTATAAGCTGCTTGTA+GGG 0.453743 1_3:+61031156 Msa0130610:CDS
TAATTGACATGAAAATGAAA+TGG 0.457548 1_3:+61031666 Msa0130610:three_prime_UTR
CGGTTCTTCGAGGTTTGGCT+CGG 0.465676 1_3:+61028786 Msa0130610:CDS
CGGCACTTACACTTCCATAC+TGG 0.466112 1_3:-61031504 None:intergenic
GCCGTAAAATGTTTGGAGCT+TGG 0.466643 1_3:+61031248 Msa0130610:CDS
TGAATATCTTCTTTAAGAGC+AGG 0.467009 1_3:-61030110 None:intergenic
CTTATTGTTTCGGTTCTTCG+AGG 0.467582 1_3:+61028776 Msa0130610:CDS
TTGATTATCTTGGATCCGTT+GGG 0.467631 1_3:+61028930 Msa0130610:CDS
TTCAATGTTCTGGTCTCTCA+AGG 0.468386 1_3:+61030978 Msa0130610:CDS
AGCCTTCAAGTCGGTTGTAT+AGG 0.470038 1_3:+61028840 Msa0130610:CDS
CTCTCCCGGTCTTGCCACTC+CGG 0.472165 1_3:-61028306 None:intergenic
ACAGCAATGCTAGGACCCTC+AGG 0.475554 1_3:+61028332 Msa0130610:CDS
AATGATGTGAGTGGTGTAGT+TGG 0.475914 1_3:-61027523 None:intergenic
CCCGCATTACCACTATAAAT+CGG 0.476218 1_3:-61028899 None:intergenic
AGTCACCGGAGTGGCAAGAC+CGG 0.477564 1_3:+61028301 Msa0130610:CDS
CAAAGTACAATGAGAATTGA+AGG 0.480373 1_3:-61027234 None:intergenic
TGATTTGATTCGAATTAAAA+GGG 0.482278 1_3:+61031621 Msa0130610:three_prime_UTR
TGCAATCTTTGCATTTCCGC+TGG 0.482627 1_3:+61030767 Msa0130610:CDS
TATCATCATACTATGTTGCT+AGG 0.484472 1_3:+61030835 Msa0130610:CDS
TTACTCAGTGTGTTTGGATG+AGG 0.484472 1_3:-61032014 None:intergenic
TATTAGAGTGTGTTTGGATG+GGG 0.488048 1_3:+61031818 Msa0130610:intron
GTGAATTCCATTGTTTGGAT+GGG 0.488356 1_3:+61031890 Msa0130610:three_prime_UTR
AGCATTGCTGTTAACTCTCC+CGG 0.489375 1_3:-61028320 None:intergenic
ACCATCTGGTTCACCATGGA+TGG 0.489910 1_3:-61027434 None:intergenic
TGCATATTTAGCTTTGAGGA+TGG 0.490680 1_3:+61031328 Msa0130610:CDS
TTTCATGTCAATTATTTACA+AGG 0.494843 1_3:-61031657 None:intergenic
GCAAAGATTGCATTGAAGAG+AGG 0.497435 1_3:-61030756 None:intergenic
ATCCTCCAACCGGAGTGTTC+CGG 0.498291 1_3:-61028622 None:intergenic
TGTAACTATCACCTACTGGA+TGG 0.499220 1_3:+61030902 Msa0130610:CDS
TTACCCTCACTTAACGGTGT+TGG 0.499552 1_3:+61028493 Msa0130610:CDS
ACGCATTTAATTCGAAGTGT+TGG 0.501332 1_3:-61031398 None:intergenic
AAGTTGGTGGGAGCAATTCA+AGG 0.501653 1_3:+61030316 Msa0130610:CDS
TGAATTCCATTGTTTGGATG+GGG 0.501764 1_3:+61031891 Msa0130610:three_prime_UTR
GAATGGAAACAGACAAGACT+TGG 0.502369 1_3:-61030400 None:intergenic
GAGGTTTATGAATGTAGAGA+AGG 0.503307 1_3:+61031197 Msa0130610:CDS
GCATATTTAGCTTTGAGGAT+GGG 0.503455 1_3:+61031329 Msa0130610:CDS
GAGGGAATGTAATGTTATGA+GGG 0.504394 1_3:+61031850 Msa0130610:three_prime_UTR
GCACATTAACACTGAACCAC+TGG 0.505606 1_3:+61030133 Msa0130610:CDS
TTGTTAGAAGAAGAACCATC+TGG 0.507820 1_3:-61027448 None:intergenic
TGCCGGAACACTCCGGTTGG+AGG 0.510189 1_3:+61028620 Msa0130610:CDS
ATCATACTATGTTGCTAGGA+TGG 0.510933 1_3:+61030839 Msa0130610:CDS
TCTCCCCACCGGAGATTCCC+CGG 0.511975 1_3:-61028658 None:intergenic
ACATGAGAGAAGAGATGTAA+AGG 0.514300 1_3:-61027196 None:intergenic
ATATTAGAGTGTGTTTGGAT+GGG 0.514508 1_3:+61031817 Msa0130610:intron
AGGGAAGAATCCCCAAAAGA+TGG 0.517414 1_3:-61030736 None:intergenic
GTAACTATCACCTACTGGAT+GGG 0.517772 1_3:+61030903 Msa0130610:CDS
GGTTCAGTATTCAGTAAATG+AGG 0.517781 1_3:+61031178 Msa0130610:CDS
ATGCTAGGACCCTCAGGGAG+CGG 0.518715 1_3:+61028338 Msa0130610:CDS
TCCGGCTAGGGCCGTTAGTA+GGG 0.518752 1_3:-61028369 None:intergenic
TCCCTCACACATACAAGATC+AGG 0.520206 1_3:+61030451 Msa0130610:CDS
AGCACTTGGTGCAATTCTCA+TGG 0.521935 1_3:+61031010 Msa0130610:CDS
TTGTGATCAATATCCAAACT+TGG 0.522631 1_3:-61027478 None:intergenic
GTAGGAAGAACAAGCTCCAT+TGG 0.522983 1_3:-61030873 None:intergenic
CAAAGATTGCATTGAAGAGA+GGG 0.524564 1_3:-61030755 None:intergenic
AATTCTCATGGATGTTAAGC+AGG 0.526442 1_3:+61031022 Msa0130610:CDS
TTTAACCAAGCTATAAAAGA+AGG 0.526780 1_3:-61031113 None:intergenic
TAGAGAAGGGTTGCATTGTA+GGG 0.528803 1_3:+61031211 Msa0130610:CDS
ACTTACCATTAGCAAGATCA+AGG 0.536943 1_3:-61028994 None:intergenic
AAAATCCTCAACGGAGTCAC+CGG 0.537973 1_3:+61028287 Msa0130610:CDS
CCGATTTATAGTGGTAATGC+GGG 0.539048 1_3:+61028899 Msa0130610:CDS
AGCCGTGGTTGAGTCCAAAC+CGG 0.541248 1_3:-61028750 None:intergenic
GTAACTGGTCGCAACGATTG+AGG 0.541770 1_3:-61027556 None:intergenic
GAGAGGATAATCACCGAGCT+TGG 0.541932 1_3:+61028587 Msa0130610:CDS
AAGTCTCAAGAGTGCGGTGT+AGG 0.547476 1_3:-61028525 None:intergenic
TTCTCTCAGGACTCCTCTGG+TGG 0.547528 1_3:+61030420 Msa0130610:CDS
ATTGAAAAGCATGATCAAAA+GGG 0.548030 1_3:-61030961 None:intergenic
GATGGGTATCCGATTTATAG+TGG 0.550612 1_3:+61028890 Msa0130610:CDS
TTCTAATCCATTAAGTCCTT+AGG 0.552424 1_3:-61031364 None:intergenic
GTCACCGGAGTGGCAAGACC+GGG 0.552629 1_3:+61028302 Msa0130610:CDS
AGGTTTATGAATGTAGAGAA+GGG 0.554104 1_3:+61031198 Msa0130610:CDS
AGTCCCATACATCCTCCAAC+CGG 0.557425 1_3:-61028632 None:intergenic
ATTAGAGTGTGTTTGGATGG+GGG 0.558008 1_3:+61031819 Msa0130610:intron
GTTTGGAGCTTGGTAATATG+TGG 0.558037 1_3:+61031258 Msa0130610:CDS
AATACAAATGTAACTAGTGA+AGG 0.561597 1_3:-61030936 None:intergenic
TCAGTAACACTAACACATGT+TGG 0.561684 1_3:-61031430 None:intergenic
AGTAGTAACAACTGTTCGAC+CGG 0.562855 1_3:-61028810 None:intergenic
AGCTTGGCCTTACACGGTGC+CGG 0.564050 1_3:+61028603 Msa0130610:CDS
TACTATGTTGCTAGGATGGT+AGG 0.565684 1_3:+61030843 Msa0130610:CDS
CCACTCCGGTGACTCCGTTG+AGG 0.567544 1_3:-61028292 None:intergenic
ACCCTACTAACGGCCCTAGC+CGG 0.569697 1_3:+61028368 Msa0130610:CDS
TTTATAGTGGTAATGCGGGT+CGG 0.569799 1_3:+61028903 Msa0130610:CDS
ACGGAGAGCAACTCCATCCA+TGG 0.570220 1_3:+61027421 Msa0130610:CDS
TGGGGCAGCCTAAATGCCTA+AGG 0.571809 1_3:+61031348 Msa0130610:CDS
GGCTAGGGCCGTTAGTAGGG+TGG 0.573601 1_3:-61028366 None:intergenic
TAGGTTCTTCTGATAACCAA+TGG 0.574040 1_3:+61030288 Msa0130610:intron
ACTCCGGTTGGAGGATGTAT+GGG 0.574193 1_3:+61028629 Msa0130610:CDS
CAAGGAATAGGCTTAGCACT+TGG 0.574720 1_3:+61030996 Msa0130610:CDS
ATAACCAATGGAACACAAGT+TGG 0.575523 1_3:+61030300 Msa0130610:CDS
TTTGGAGCTTGGTAATATGT+GGG 0.577127 1_3:+61031259 Msa0130610:CDS
ACCAATGGAACACAAGTTGG+TGG 0.578578 1_3:+61030303 Msa0130610:CDS
TGGTAATATGTGGGGAGATG+TGG 0.581182 1_3:+61031268 Msa0130610:CDS
CTGTTATAAGCTGCTTGTAG+GGG 0.582384 1_3:+61031157 Msa0130610:CDS
AGATCAAGGAGAAAATCAGC+AGG 0.584836 1_3:-61028980 None:intergenic
TCCGATTTATAGTGGTAATG+CGG 0.585845 1_3:+61028898 Msa0130610:CDS
GTTTCCAACACCGTTAAGTG+AGG 0.585941 1_3:-61028497 None:intergenic
GATCTATATTGACACATACA+TGG 0.588711 1_3:-61031535 None:intergenic
CGGCAAAACCACCCTACTAA+CGG 0.588956 1_3:+61028358 Msa0130610:CDS
TTCAAGGTTCTGCTTAAAAG+GGG 0.590163 1_3:+61030332 Msa0130610:CDS
GAATATCTTCTTTAAGAGCA+GGG 0.592877 1_3:-61030109 None:intergenic
AGTGGTGTAGTTGGATGAGA+AGG 0.594250 1_3:-61027514 None:intergenic
GAATTCCATTGTTTGGATGG+GGG 0.595396 1_3:+61031892 Msa0130610:three_prime_UTR
GCACCGTGTAAGGCCAAGCT+CGG 0.596232 1_3:-61028600 None:intergenic
GGAGAGTTAACAGCAATGCT+AGG 0.597991 1_3:+61028323 Msa0130610:CDS
TCTAGCTTCAGTGACAATGT+TGG 0.599945 1_3:+61031052 Msa0130610:CDS
AGACTTGCCGGAAAAGTCAC+CGG 0.603239 1_3:+61028392 Msa0130610:CDS
TTAAAAGGGGTTTACAAGAG+AGG 0.604021 1_3:+61030345 Msa0130610:CDS
AAAGGGGTTTACAAGAGAGG+AGG 0.611686 1_3:+61030348 Msa0130610:CDS
TCACCGAGCTTGGCCTTACA+CGG 0.613858 1_3:+61028597 Msa0130610:CDS
TACACGGTGCCGGAACACTC+CGG 0.615135 1_3:+61028613 Msa0130610:CDS
TCCATCCATGGTGAACCAGA+TGG 0.616065 1_3:+61027433 Msa0130610:CDS
TGAAGAAAAGGTCGAACACA+CGG 0.620552 1_3:+61028565 Msa0130610:CDS
ATCACCTCTTAATTTAACTG+AGG 0.620944 1_3:-61031602 None:intergenic
TTTAGCATTGGTCTATCCAG+CGG 0.622162 1_3:-61030783 None:intergenic
GAGGAAATGTAATGTTACGA+GGG 0.624297 1_3:+61031931 Msa0130610:three_prime_UTR
ACCTGATCTTGTATGTGTGA+GGG 0.626328 1_3:-61030452 None:intergenic
TTTCCGGGGAATCTCCGGTG+GGG 0.629242 1_3:+61028655 Msa0130610:CDS
CTATGAAGAAACAAGGCTAG+AGG 0.633416 1_3:-61027264 None:intergenic
CCAATGGAACACAAGTTGGT+GGG 0.633918 1_3:+61030304 Msa0130610:CDS
CTTAAGACCACCCATCCAGT+AGG 0.634783 1_3:-61030913 None:intergenic
AGGGATCAGAGTGCCACCAG+AGG 0.637865 1_3:-61030433 None:intergenic
GAGTATTGGCCAAGAAATGT+TGG 0.639195 1_3:+61028691 Msa0130610:CDS
TCGCAACGATTGAGGAAGAA+CGG 0.640584 1_3:-61027548 None:intergenic
TTTCCAACACCGTTAAGTGA+GGG 0.642376 1_3:-61028496 None:intergenic
CGAAACAATAAGTTGAGCCG+TGG 0.642687 1_3:-61028765 None:intergenic
GTTGAGTCCAAACCGGAAGT+CGG 0.642816 1_3:-61028743 None:intergenic
TACCTGATCTTGTATGTGTG+AGG 0.644183 1_3:-61030453 None:intergenic
ACTATCACCTACTGGATGGG+TGG 0.645064 1_3:+61030906 Msa0130610:CDS
CTCACCCAACACAAACAGAA+CGG 0.646890 1_3:+61027402 Msa0130610:CDS
ACACATACATGGCTCAACAT+CGG 0.647348 1_3:-61031524 None:intergenic
CGGTGCCGGAACACTCCGGT+TGG 0.647421 1_3:+61028617 Msa0130610:CDS
TTCCGGTTTGGACTCAACCA+CGG 0.648488 1_3:+61028748 Msa0130610:CDS
TGAGGAAATGTAATGTTACG+AGG 0.648929 1_3:+61031930 Msa0130610:three_prime_UTR
CAGCAATGCTAGGACCCTCA+GGG 0.651059 1_3:+61028333 Msa0130610:CDS
TAGGATGTTTGATAAAGTGG+TGG 0.654029 1_3:+61028859 Msa0130610:CDS
ACCGGAACAATAACATACAA+CGG 0.657334 1_3:+61028410 Msa0130610:CDS
AAAAGGTCGAACACACGGAG+AGG 0.666375 1_3:+61028570 Msa0130610:CDS
CTTGGGAAGTCTCAAGAGTG+CGG 0.673648 1_3:-61028531 None:intergenic
ATCCTAACTATGAAGAAACA+AGG 0.674355 1_3:-61027271 None:intergenic
TTGGAGCTTGGTAATATGTG+GGG 0.676443 1_3:+61031260 Msa0130610:CDS
GATGGTAGGAGACTTACCAA+TGG 0.680493 1_3:+61030857 Msa0130610:CDS
AAGAACCATCTGGTTCACCA+TGG 0.682189 1_3:-61027438 None:intergenic
TTAGTGTTACTGACACGACA+CGG 0.683897 1_3:+61031440 Msa0130610:three_prime_UTR
GGATTAACAAAGTTAAAACC+CGG 0.685148 1_3:-61028959 None:intergenic
CTATTCATCAGCCTTCAAGT+CGG 0.687174 1_3:+61028831 Msa0130610:CDS
TAGTTATAAAGTGATGAACA+AGG 0.693065 1_3:-61027165 None:intergenic
AGTACAATGAGAATTGAAGG+AGG 0.708640 1_3:-61027231 None:intergenic
CCTCAACGGAGTCACCGGAG+TGG 0.710656 1_3:+61028292 Msa0130610:CDS
AAAACCCGGAACAAACCCAA+CGG 0.714085 1_3:-61028945 None:intergenic
AATTAGTGACTGTTTCACTG+AGG 0.725096 1_3:-61030063 None:intergenic
AGAACGGAAAATGATGTGAG+TGG 0.728579 1_3:-61027532 None:intergenic
GGGAATGTAATGCAATGTTG+AGG 0.731716 1_3:+61031912 Msa0130610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCTAAATTATTAAATATAAA+AGG - chr1_3:61029108-61029127 None:intergenic 10.0%
!!! CCTTTTATATTTAATAATTT+AGG + chr1_3:61029105-61029124 Msa0130610:intron 10.0%
!! TAAATAATTAATAATAAAGG+AGG + chr1_3:61029477-61029496 Msa0130610:intron 10.0%
!!! GATAATTATTAATTTTTGAT+AGG + chr1_3:61030269-61030288 Msa0130610:intron 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG - chr1_3:61031982-61032001 None:intergenic 10.0%
!!! TTAAATAATGGATAAAACTT+AGG - chr1_3:61027830-61027849 None:intergenic 15.0%
!!! TATTTTGGAGAATTAAATAA+TGG - chr1_3:61027842-61027861 None:intergenic 15.0%
!! TATTTAATAATTTAGGGATT+TGG + chr1_3:61029112-61029131 Msa0130610:intron 15.0%
!!! TCAGATTTTAAAATAGTTAT+AGG - chr1_3:61029142-61029161 None:intergenic 15.0%
!!! TTTTAAAATCTGATAGTTTT+TGG + chr1_3:61029149-61029168 Msa0130610:intron 15.0%
!!! TTTCTCTAGATTTTTTTTTT+TGG + chr1_3:61029172-61029191 Msa0130610:intron 15.0%
!!! ATTTATGTTTGTTGTTTTAT+TGG + chr1_3:61029303-61029322 Msa0130610:intron 15.0%
!! TTTCATGTAAAAAAAAAAGA+TGG + chr1_3:61029866-61029885 Msa0130610:intron 15.0%
!!! AAGTTCTCTATAGAATATTT+TGG + chr1_3:61029197-61029216 Msa0130610:intron 20.0%
!!! TTGTTTTATTGGTATATAAG+TGG + chr1_3:61029314-61029333 Msa0130610:intron 20.0%
!!! AATCAAACAAGTATATGTTT+TGG - chr1_3:61029603-61029622 None:intergenic 20.0%
!!! CATATCTACTAATCTTTTTA+AGG - chr1_3:61029925-61029944 None:intergenic 20.0%
!! ACTTCTAATTATTAAGACTA+TGG + chr1_3:61029976-61029995 Msa0130610:intron 20.0%
!! CTTCTAATTATTAAGACTAT+GGG + chr1_3:61029977-61029996 Msa0130610:intron 20.0%
!!! TTAATGTTGCTTTTACTTTA+AGG + chr1_3:61030210-61030229 Msa0130610:intron 20.0%
!! TTATGTTGTACAAAATCATA+TGG + chr1_3:61030240-61030259 Msa0130610:intron 20.0%
!! GGATCAAATTCAAATATAAA+TGG + chr1_3:61030506-61030525 Msa0130610:intron 20.0%
!! ACATTAGTACATATAAATGA+TGG + chr1_3:61030531-61030550 Msa0130610:intron 20.0%
!! TAAAAAAAGAAAGATCATCA+GGG + chr1_3:61030802-61030821 Msa0130610:CDS 20.0%
!!! CGTATTATTATTTTCAAGAT+CGG + chr1_3:61031564-61031583 Msa0130610:three_prime_UTR 20.0%
!!! TGATTTGATTCGAATTAAAA+GGG + chr1_3:61031621-61031640 Msa0130610:three_prime_UTR 20.0%
!! TTTCATGTCAATTATTTACA+AGG - chr1_3:61031660-61031679 None:intergenic 20.0%
!! TAATTGACATGAAAATGAAA+TGG + chr1_3:61031666-61031685 Msa0130610:three_prime_UTR 20.0%
!! AATTTAGTCCAAATTCTTTA+TGG + chr1_3:61031708-61031727 Msa0130610:three_prime_UTR 20.0%
! TAGTTATAAAGTGATGAACA+AGG - chr1_3:61027168-61027187 None:intergenic 25.0%
!!! TAATAGTTTTTTCTTGCTCA+GGG - chr1_3:61027366-61027385 None:intergenic 25.0%
!!! TTAATAGTTTTTTCTTGCTC+AGG - chr1_3:61027367-61027386 None:intergenic 25.0%
! TAACAAAGTTAAACCAAGTT+TGG + chr1_3:61027465-61027484 Msa0130610:CDS 25.0%
! AGTAAAAGCTATAGTAAGTT+GGG + chr1_3:61027708-61027727 Msa0130610:intron 25.0%
!!! GCATTTTTTTAGCTACTTTT+CGG + chr1_3:61027984-61028003 Msa0130610:intron 25.0%
!! ACATAAATTTCACGTTTTGT+GGG - chr1_3:61028084-61028103 None:intergenic 25.0%
!! AAATTTAAGTGTTTTTCACG+TGG - chr1_3:61028113-61028132 None:intergenic 25.0%
! ATGACAAACCAAAAGAAAAA+CGG + chr1_3:61028230-61028249 Msa0130610:CDS 25.0%
! TCATCCAAAAACAATAAACT+CGG - chr1_3:61028722-61028741 None:intergenic 25.0%
!! TAAGTTCTTGTTTGTTAATC+CGG + chr1_3:61029012-61029031 Msa0130610:intron 25.0%
!!! GTCCTTTTTTTTTGAGTAAT+TGG + chr1_3:61029081-61029100 Msa0130610:intron 25.0%
! GACCAATTACTCAAAAAAAA+AGG - chr1_3:61029086-61029105 None:intergenic 25.0%
!!! TATTTTGGTCTACAATATGA+TGG + chr1_3:61029212-61029231 Msa0130610:intron 25.0%
!! TCTACAATATGATGGAAATA+GGG + chr1_3:61029220-61029239 Msa0130610:intron 25.0%
! TAAATACCAAAAAAGAGCAA+AGG - chr1_3:61029277-61029296 None:intergenic 25.0%
! GTATATAAGTGGAAAGTAAA+AGG + chr1_3:61029325-61029344 Msa0130610:intron 25.0%
!! CTTCTTTTGACAATTTGAAA+AGG + chr1_3:61029538-61029557 Msa0130610:intron 25.0%
! CATGTAAAAAAAAAAGATGG+TGG + chr1_3:61029869-61029888 Msa0130610:intron 25.0%
! AAAAGATTAGTAGATATGCT+TGG + chr1_3:61029927-61029946 Msa0130610:intron 25.0%
!! GAAATTTTTGTGAGATATGA+TGG + chr1_3:61029949-61029968 Msa0130610:intron 25.0%
!! AGGGTATAAGTTTTTCTTAT+AGG - chr1_3:61030093-61030112 None:intergenic 25.0%
!!! TACCTTATAGTCTGTTTTTT+TGG + chr1_3:61030484-61030503 Msa0130610:intron 25.0%
!!! ACCTTATAGTCTGTTTTTTT+GGG + chr1_3:61030485-61030504 Msa0130610:intron 25.0%
! AACAATATAACCATTGTAAC+AGG + chr1_3:61030692-61030711 Msa0130610:intron 25.0%
!!! GATCTTTCTTTTTTTAGCAT+TGG - chr1_3:61030798-61030817 None:intergenic 25.0%
! CTAAAAAAAGAAAGATCATC+AGG + chr1_3:61030801-61030820 Msa0130610:CDS 25.0%
! GTGATAGTTACAAAAATTGT+AGG - chr1_3:61030894-61030913 None:intergenic 25.0%
! AATACAAATGTAACTAGTGA+AGG - chr1_3:61030939-61030958 None:intergenic 25.0%
!! ATTGAAAAGCATGATCAAAA+GGG - chr1_3:61030964-61030983 None:intergenic 25.0%
! TTTAACCAAGCTATAAAAGA+AGG - chr1_3:61031116-61031135 None:intergenic 25.0%
!!! CTCAAATTATTTTACCAGTA+TGG + chr1_3:61031490-61031509 Msa0130610:three_prime_UTR 25.0%
!! GTGATTTGATTCGAATTAAA+AGG + chr1_3:61031620-61031639 Msa0130610:three_prime_UTR 25.0%
!! GTTTTTCTCCATAAAGAATT+TGG - chr1_3:61031719-61031738 None:intergenic 25.0%
! ATCATATATTAGAGTGTGTT+TGG + chr1_3:61031812-61031831 Msa0130610:intron 25.0%
CAAAGTACAATGAGAATTGA+AGG - chr1_3:61027237-61027256 None:intergenic 30.0%
ATCCTAACTATGAAGAAACA+AGG - chr1_3:61027274-61027293 None:intergenic 30.0%
!!! AATAGTTTTTTCTTGCTCAG+GGG - chr1_3:61027365-61027384 None:intergenic 30.0%
TTGTGATCAATATCCAAACT+TGG - chr1_3:61027481-61027500 None:intergenic 30.0%
TGGATGAGAAGGAATATTAA+TGG - chr1_3:61027506-61027525 None:intergenic 30.0%
! CTATAGCTTTTACTGTTCAT+TGG - chr1_3:61027702-61027721 None:intergenic 30.0%
CAGTAAAAGCTATAGTAAGT+TGG + chr1_3:61027707-61027726 Msa0130610:intron 30.0%
GTAAAAGCTATAGTAAGTTG+GGG + chr1_3:61027709-61027728 Msa0130610:intron 30.0%
CTCTTGATTTCTTAGCTATT+AGG + chr1_3:61027800-61027819 Msa0130610:intron 30.0%
TTGATTTCTTAGCTATTAGG+TGG + chr1_3:61027803-61027822 Msa0130610:intron 30.0%
TTCTCCAAAATATGAAACAC+TGG + chr1_3:61027850-61027869 Msa0130610:intron 30.0%
! ATGACCAGTGTTTCATATTT+TGG - chr1_3:61027857-61027876 None:intergenic 30.0%
! CACATAAATTTCACGTTTTG+TGG - chr1_3:61028085-61028104 None:intergenic 30.0%
!!! GTTTTTCTTTTGGTTTGTCA+TGG - chr1_3:61028231-61028250 None:intergenic 30.0%
GTAACTAGAAAAATCCTCAA+CGG + chr1_3:61028278-61028297 Msa0130610:CDS 30.0%
CATCCAAAAACAATAAACTC+GGG - chr1_3:61028721-61028740 None:intergenic 30.0%
GTATAGGATGTTTGATAAAG+TGG + chr1_3:61028856-61028875 Msa0130610:CDS 30.0%
GGATTAACAAAGTTAAAACC+CGG - chr1_3:61028962-61028981 None:intergenic 30.0%
GCATGCAATTAAGCTAAATA+AGG - chr1_3:61029054-61029073 None:intergenic 30.0%
! GTCTACAATATGATGGAAAT+AGG + chr1_3:61029219-61029238 Msa0130610:intron 30.0%
!!! TTCAAACCTTTGCTCTTTTT+TGG + chr1_3:61029268-61029287 Msa0130610:intron 30.0%
ATAAGTGGAAAGTAAAAGGT+TGG + chr1_3:61029329-61029348 Msa0130610:intron 30.0%
TAAGTGGAAAGTAAAAGGTT+GGG + chr1_3:61029330-61029349 Msa0130610:intron 30.0%
AACAAAATTGACACCCAATT+TGG + chr1_3:61029382-61029401 Msa0130610:intron 30.0%
ACAAAATTGACACCCAATTT+GGG + chr1_3:61029383-61029402 Msa0130610:intron 30.0%
TTACACTTGTCGTTATTTGT+TGG + chr1_3:61029432-61029451 Msa0130610:intron 30.0%
TACACTTGTCGTTATTTGTT+GGG + chr1_3:61029433-61029452 Msa0130610:intron 30.0%
TTTGACAATTTGAAAAGGAC+TGG + chr1_3:61029543-61029562 Msa0130610:intron 30.0%
TTGACAATTTGAAAAGGACT+GGG + chr1_3:61029544-61029563 Msa0130610:intron 30.0%
!! ATGAGTGCTTTTGAAAATTG+AGG + chr1_3:61029656-61029675 Msa0130610:intron 30.0%
CAAGTTGCAATGAAACTATT+AGG - chr1_3:61029739-61029758 None:intergenic 30.0%
GTGGAAACATATTAAAAGCA+TGG + chr1_3:61029888-61029907 Msa0130610:intron 30.0%
! TTAAGACTATGGGATTTTTC+AGG + chr1_3:61029987-61030006 Msa0130610:intron 30.0%
! GAATATCTTCTTTAAGAGCA+GGG - chr1_3:61030112-61030131 None:intergenic 30.0%
! TGAATATCTTCTTTAAGAGC+AGG - chr1_3:61030113-61030132 None:intergenic 30.0%
AATTCAAGGTTCTGCTTAAA+AGG + chr1_3:61030330-61030349 Msa0130610:CDS 30.0%
ATTCAAGGTTCTGCTTAAAA+GGG + chr1_3:61030331-61030350 Msa0130610:CDS 30.0%
TCCCAAAAAAACAGACTATA+AGG - chr1_3:61030489-61030508 None:intergenic 30.0%
! TACATATAAATGATGGAGAC+TGG + chr1_3:61030538-61030557 Msa0130610:intron 30.0%
ATGTGAGACTGATAAGTATT+GGG - chr1_3:61030607-61030626 None:intergenic 30.0%
AATGTGAGACTGATAAGTAT+TGG - chr1_3:61030608-61030627 None:intergenic 30.0%
ATATAACCATTGTAACAGGT+AGG + chr1_3:61030696-61030715 Msa0130610:intron 30.0%
! TATTCTTCTTCTCCATCTTT+TGG + chr1_3:61030724-61030743 Msa0130610:CDS 30.0%
! ATTCTTCTTCTCCATCTTTT+GGG + chr1_3:61030725-61030744 Msa0130610:CDS 30.0%
CAACATAGTATGATGATAGA+TGG - chr1_3:61030833-61030852 None:intergenic 30.0%
TATCATCATACTATGTTGCT+AGG + chr1_3:61030835-61030854 Msa0130610:CDS 30.0%
! TTTTTGTAACTATCACCTAC+TGG + chr1_3:61030898-61030917 Msa0130610:CDS 30.0%
! CATTGAAAAGCATGATCAAA+AGG - chr1_3:61030965-61030984 None:intergenic 30.0%
!!! ATGTTGGTTTTTCTTTTAGC+TGG + chr1_3:61031068-61031087 Msa0130610:CDS 30.0%
! AAATGCCTTCTTTTATAGCT+TGG + chr1_3:61031108-61031127 Msa0130610:CDS 30.0%
AGGTTTATGAATGTAGAGAA+GGG + chr1_3:61031198-61031217 Msa0130610:CDS 30.0%
!! GCATTGACTATAATGTTTGT+TGG + chr1_3:61031293-61031312 Msa0130610:CDS 30.0%
!! TTGTTGCATATTTAGCTTTG+AGG + chr1_3:61031324-61031343 Msa0130610:CDS 30.0%
TTCTAATCCATTAAGTCCTT+AGG - chr1_3:61031367-61031386 None:intergenic 30.0%
GATCTATATTGACACATACA+TGG - chr1_3:61031538-61031557 None:intergenic 30.0%
ATCACCTCTTAATTTAACTG+AGG - chr1_3:61031605-61031624 None:intergenic 30.0%
TCAAATGAACTAACTCTAAC+TGG - chr1_3:61031750-61031769 None:intergenic 30.0%
TATATTAGAGTGTGTTTGGA+TGG + chr1_3:61031816-61031835 Msa0130610:intron 30.0%
ATATTAGAGTGTGTTTGGAT+GGG + chr1_3:61031817-61031836 Msa0130610:intron 30.0%
GAGGGAATTCAAATACTTTA+AGG + chr1_3:61031949-61031968 Msa0130610:three_prime_UTR 30.0%
ACATGAGAGAAGAGATGTAA+AGG - chr1_3:61027199-61027218 None:intergenic 35.0%
AGTACAATGAGAATTGAAGG+AGG - chr1_3:61027234-61027253 None:intergenic 35.0%
!! AGCCTTGTTTCTTCATAGTT+AGG + chr1_3:61027269-61027288 Msa0130610:five_prime_UTR 35.0%
!!! ATAGTTTTTTCTTGCTCAGG+GGG - chr1_3:61027364-61027383 None:intergenic 35.0%
TTGTTAGAAGAAGAACCATC+TGG - chr1_3:61027451-61027470 None:intergenic 35.0%
GTACTTACTTTGAGTGTAAC+TGG - chr1_3:61027574-61027593 None:intergenic 35.0%
ACCGGAACAATAACATACAA+CGG + chr1_3:61028410-61028429 Msa0130610:CDS 35.0%
TCCGTTGTATGTTATTGTTC+CGG - chr1_3:61028414-61028433 None:intergenic 35.0%
TGTAGTTTACCCTCACTTAA+CGG + chr1_3:61028487-61028506 Msa0130610:CDS 35.0%
GAGAGAAAAAGGATGAGTAT+TGG + chr1_3:61028677-61028696 Msa0130610:CDS 35.0%
! GAACCCGAGTTTATTGTTTT+TGG + chr1_3:61028715-61028734 Msa0130610:CDS 35.0%
TAGGATGTTTGATAAAGTGG+TGG + chr1_3:61028859-61028878 Msa0130610:CDS 35.0%
! TCCGATTTATAGTGGTAATG+CGG + chr1_3:61028898-61028917 Msa0130610:CDS 35.0%
ATTGATTATCTTGGATCCGT+TGG + chr1_3:61028929-61028948 Msa0130610:CDS 35.0%
TTGATTATCTTGGATCCGTT+GGG + chr1_3:61028930-61028949 Msa0130610:CDS 35.0%
TTTCTCCTTGATCTTGCTAA+TGG + chr1_3:61028989-61029008 Msa0130610:CDS 35.0%
ACTTACCATTAGCAAGATCA+AGG - chr1_3:61028997-61029016 None:intergenic 35.0%
AGGTCAAAGAGAAAATCAAC+CGG - chr1_3:61029034-61029053 None:intergenic 35.0%
! AGTAAAAGGTTGGGATTTTG+TGG + chr1_3:61029339-61029358 Msa0130610:intron 35.0%
TTCAGTATCACTCCCAAATT+GGG - chr1_3:61029398-61029417 None:intergenic 35.0%
TTTCAGTATCACTCCCAAAT+TGG - chr1_3:61029399-61029418 None:intergenic 35.0%
AATTTGGGAGTGATACTGAA+AGG + chr1_3:61029398-61029417 Msa0130610:intron 35.0%
ATTTGGGAGTGATACTGAAA+GGG + chr1_3:61029399-61029418 Msa0130610:intron 35.0%
!! TGCTTTTGAAAATTGAGGTG+TGG + chr1_3:61029661-61029680 Msa0130610:intron 35.0%
CATTATGTCTGTCTGAATCT+TGG - chr1_3:61029691-61029710 None:intergenic 35.0%
AGACATAATGATACCATGCA+CGG + chr1_3:61029701-61029720 Msa0130610:intron 35.0%
AATTAGTGACTGTTTCACTG+AGG - chr1_3:61030066-61030085 None:intergenic 35.0%
!!! GTTGCTTTTACTTTAAGGCA+TGG + chr1_3:61030215-61030234 Msa0130610:intron 35.0%
TAGGTTCTTCTGATAACCAA+TGG + chr1_3:61030288-61030307 Msa0130610:intron 35.0%
ATAACCAATGGAACACAAGT+TGG + chr1_3:61030300-61030319 Msa0130610:CDS 35.0%
TTCAAGGTTCTGCTTAAAAG+GGG + chr1_3:61030332-61030351 Msa0130610:CDS 35.0%
TTAAAAGGGGTTTACAAGAG+AGG + chr1_3:61030345-61030364 Msa0130610:CDS 35.0%
ACGTCTTCAATGTGAATTGT+CGG - chr1_3:61030576-61030595 None:intergenic 35.0%
ATTCACATTGAAGACGTGTT+AGG + chr1_3:61030579-61030598 Msa0130610:intron 35.0%
! TTCTTCTTCTCCATCTTTTG+GGG + chr1_3:61030726-61030745 Msa0130610:CDS 35.0%
CAAAGATTGCATTGAAGAGA+GGG - chr1_3:61030758-61030777 None:intergenic 35.0%
ATCATACTATGTTGCTAGGA+TGG + chr1_3:61030839-61030858 Msa0130610:CDS 35.0%
! GATCATGCTTTTCAATGTTC+TGG + chr1_3:61030968-61030987 Msa0130610:CDS 35.0%
AATTCTCATGGATGTTAAGC+AGG + chr1_3:61031022-61031041 Msa0130610:CDS 35.0%
!! TTGGTTTTTCTTTTAGCTGG+TGG + chr1_3:61031071-61031090 Msa0130610:CDS 35.0%
TACTGTTATAAGCTGCTTGT+AGG + chr1_3:61031155-61031174 Msa0130610:CDS 35.0%
ACTGTTATAAGCTGCTTGTA+GGG + chr1_3:61031156-61031175 Msa0130610:CDS 35.0%
GGTTCAGTATTCAGTAAATG+AGG + chr1_3:61031178-61031197 Msa0130610:CDS 35.0%
GAGGTTTATGAATGTAGAGA+AGG + chr1_3:61031197-61031216 Msa0130610:CDS 35.0%
! ACCAAGCTCCAAACATTTTA+CGG - chr1_3:61031252-61031271 None:intergenic 35.0%
! TTTGGAGCTTGGTAATATGT+GGG + chr1_3:61031259-61031278 Msa0130610:CDS 35.0%
!! TGCATATTTAGCTTTGAGGA+TGG + chr1_3:61031328-61031347 Msa0130610:CDS 35.0%
!! GCATATTTAGCTTTGAGGAT+GGG + chr1_3:61031329-61031348 Msa0130610:CDS 35.0%
!! CATATTTAGCTTTGAGGATG+GGG + chr1_3:61031330-61031349 Msa0130610:CDS 35.0%
CATTAAGTCCTTAGGCATTT+AGG - chr1_3:61031359-61031378 None:intergenic 35.0%
CTAAATGCCTAAGGACTTAA+TGG + chr1_3:61031357-61031376 Msa0130610:CDS 35.0%
ACGCATTTAATTCGAAGTGT+TGG - chr1_3:61031401-61031420 None:intergenic 35.0%
TCAGTAACACTAACACATGT+TGG - chr1_3:61031433-61031452 None:intergenic 35.0%
ACTGCCTCAGTTAAATTAAG+AGG + chr1_3:61031598-61031617 Msa0130610:three_prime_UTR 35.0%
TATTAGAGTGTGTTTGGATG+GGG + chr1_3:61031818-61031837 Msa0130610:intron 35.0%
TGAGGGAATGTAATGTTATG+AGG + chr1_3:61031849-61031868 Msa0130610:three_prime_UTR 35.0%
GAGGGAATGTAATGTTATGA+GGG + chr1_3:61031850-61031869 Msa0130610:three_prime_UTR 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr1_3:61031868-61031887 Msa0130610:three_prime_UTR 35.0%
TTGAGGTGAATTCCATTGTT+TGG + chr1_3:61031885-61031904 Msa0130610:three_prime_UTR 35.0%
GTGAATTCCATTGTTTGGAT+GGG + chr1_3:61031890-61031909 Msa0130610:three_prime_UTR 35.0%
TGAATTCCATTGTTTGGATG+GGG + chr1_3:61031891-61031910 Msa0130610:three_prime_UTR 35.0%
TGAGGAAATGTAATGTTACG+AGG + chr1_3:61031930-61031949 Msa0130610:three_prime_UTR 35.0%
GAGGAAATGTAATGTTACGA+GGG + chr1_3:61031931-61031950 Msa0130610:three_prime_UTR 35.0%
TGTGTTTGGATGAGGTAATT+TGG - chr1_3:61032009-61032028 None:intergenic 35.0%
CTATGAAGAAACAAGGCTAG+AGG - chr1_3:61027267-61027286 None:intergenic 40.0%
! GTGTTGGGTGAGTTGTTATT+TGG - chr1_3:61027394-61027413 None:intergenic 40.0%
AATGATGTGAGTGGTGTAGT+TGG - chr1_3:61027526-61027545 None:intergenic 40.0%
AGAACGGAAAATGATGTGAG+TGG - chr1_3:61027535-61027554 None:intergenic 40.0%
ATTGGTCGCTTATCAACACA+TGG - chr1_3:61027684-61027703 None:intergenic 40.0%
! AAGCTATAGTAAGTTGGGGA+AGG + chr1_3:61027713-61027732 Msa0130610:intron 40.0%
!!! AAACGCAGCCGTTTTTCTTT+TGG - chr1_3:61028241-61028260 None:intergenic 40.0%
! AAAGAAAAACGGCTGCGTTT+TGG + chr1_3:61028241-61028260 Msa0130610:CDS 40.0%
! AAGAAAAACGGCTGCGTTTT+GGG + chr1_3:61028242-61028261 Msa0130610:CDS 40.0%
! TATTGTTCCGGTGACTTTTC+CGG - chr1_3:61028402-61028421 None:intergenic 40.0%
TCCTGCATGAAACGCAAAAT+AGG + chr1_3:61028446-61028465 Msa0130610:CDS 40.0%
! TCCTATTTTGCGTTTCATGC+AGG - chr1_3:61028450-61028469 None:intergenic 40.0%
TTTCCAACACCGTTAAGTGA+GGG - chr1_3:61028499-61028518 None:intergenic 40.0%
TGAAGAAAAGGTCGAACACA+CGG + chr1_3:61028565-61028584 Msa0130610:CDS 40.0%
!! GAGTATTGGCCAAGAAATGT+TGG + chr1_3:61028691-61028710 Msa0130610:CDS 40.0%
!! TTTTTGGATGAACCGACTTC+CGG + chr1_3:61028731-61028750 Msa0130610:CDS 40.0%
CACGGCTCAACTTATTGTTT+CGG + chr1_3:61028766-61028785 Msa0130610:CDS 40.0%
CTTATTGTTTCGGTTCTTCG+AGG + chr1_3:61028776-61028795 Msa0130610:CDS 40.0%
AGTAGTAACAACTGTTCGAC+CGG - chr1_3:61028813-61028832 None:intergenic 40.0%
CTATTCATCAGCCTTCAAGT+CGG + chr1_3:61028831-61028850 Msa0130610:CDS 40.0%
!! ATCCTATACAACCGACTTGA+AGG - chr1_3:61028845-61028864 None:intergenic 40.0%
!!! AAAGTGGTGGTTTTGTCTGA+TGG + chr1_3:61028872-61028891 Msa0130610:CDS 40.0%
!!! AAGTGGTGGTTTTGTCTGAT+GGG + chr1_3:61028873-61028892 Msa0130610:CDS 40.0%
GATGGGTATCCGATTTATAG+TGG + chr1_3:61028890-61028909 Msa0130610:CDS 40.0%
CCCGCATTACCACTATAAAT+CGG - chr1_3:61028902-61028921 None:intergenic 40.0%
! CCGATTTATAGTGGTAATGC+GGG + chr1_3:61028899-61028918 Msa0130610:CDS 40.0%
! TTTATAGTGGTAATGCGGGT+CGG + chr1_3:61028903-61028922 Msa0130610:CDS 40.0%
GGTCGGGTAATTGATTATCT+TGG + chr1_3:61028920-61028939 Msa0130610:CDS 40.0%
AGATCAAGGAGAAAATCAGC+AGG - chr1_3:61028983-61029002 None:intergenic 40.0%
TTTGGGAGTGATACTGAAAG+GGG + chr1_3:61029400-61029419 Msa0130610:intron 40.0%
! TGTCGTTATTTGTTGGGTGA+AGG + chr1_3:61029439-61029458 Msa0130610:intron 40.0%
!! GAGGTGCTGAAAAAAGATTG+AGG + chr1_3:61029496-61029515 Msa0130610:intron 40.0%
GAAAAGATAGATTCCGTGCA+TGG - chr1_3:61029717-61029736 None:intergenic 40.0%
!! AGGAGGCATGAATCTTTTTC+TGG + chr1_3:61030365-61030384 Msa0130610:CDS 40.0%
GAATGGAAACAGACAAGACT+TGG - chr1_3:61030403-61030422 None:intergenic 40.0%
TTGTCTGTTTCCATTCTCTC+AGG + chr1_3:61030407-61030426 Msa0130610:CDS 40.0%
ACCTGATCTTGTATGTGTGA+GGG - chr1_3:61030455-61030474 None:intergenic 40.0%
TACCTGATCTTGTATGTGTG+AGG - chr1_3:61030456-61030475 None:intergenic 40.0%
AGAAGTCCTACCTGTTACAA+TGG - chr1_3:61030705-61030724 None:intergenic 40.0%
GCAAAGATTGCATTGAAGAG+AGG - chr1_3:61030759-61030778 None:intergenic 40.0%
!! TTTAGCATTGGTCTATCCAG+CGG - chr1_3:61030786-61030805 None:intergenic 40.0%
TACTATGTTGCTAGGATGGT+AGG + chr1_3:61030843-61030862 Msa0130610:CDS 40.0%
TGTAACTATCACCTACTGGA+TGG + chr1_3:61030902-61030921 Msa0130610:CDS 40.0%
GTAACTATCACCTACTGGAT+GGG + chr1_3:61030903-61030922 Msa0130610:CDS 40.0%
TTCAATGTTCTGGTCTCTCA+AGG + chr1_3:61030978-61030997 Msa0130610:CDS 40.0%
! TCTAGCTTCAGTGACAATGT+TGG + chr1_3:61031052-61031071 Msa0130610:CDS 40.0%
CTGTTATAAGCTGCTTGTAG+GGG + chr1_3:61031157-61031176 Msa0130610:CDS 40.0%
TAGAGAAGGGTTGCATTGTA+GGG + chr1_3:61031211-61031230 Msa0130610:CDS 40.0%
TTTCCCTGCCGTAAAATGTT+TGG + chr1_3:61031241-61031260 Msa0130610:CDS 40.0%
! GTTTGGAGCTTGGTAATATG+TGG + chr1_3:61031258-61031277 Msa0130610:CDS 40.0%
! TTGGAGCTTGGTAATATGTG+GGG + chr1_3:61031260-61031279 Msa0130610:CDS 40.0%
! TTAGTGTTACTGACACGACA+CGG + chr1_3:61031440-61031459 Msa0130610:three_prime_UTR 40.0%
ACACATACATGGCTCAACAT+CGG - chr1_3:61031527-61031546 None:intergenic 40.0%
ATTAGAGTGTGTTTGGATGG+GGG + chr1_3:61031819-61031838 Msa0130610:intron 40.0%
GGTGAATTCCATTGTTTGGA+TGG + chr1_3:61031889-61031908 Msa0130610:three_prime_UTR 40.0%
GAATTCCATTGTTTGGATGG+GGG + chr1_3:61031892-61031911 Msa0130610:three_prime_UTR 40.0%
GGGAATGTAATGCAATGTTG+AGG + chr1_3:61031912-61031931 Msa0130610:three_prime_UTR 40.0%
TTACTCAGTGTGTTTGGATG+AGG - chr1_3:61032017-61032036 None:intergenic 40.0%
CTCACCCAACACAAACAGAA+CGG + chr1_3:61027402-61027421 Msa0130610:CDS 45.0%
CTCTCCGTTCTGTTTGTGTT+GGG - chr1_3:61027409-61027428 None:intergenic 45.0%
! AAGAACCATCTGGTTCACCA+TGG - chr1_3:61027441-61027460 None:intergenic 45.0%
AGTGGTGTAGTTGGATGAGA+AGG - chr1_3:61027517-61027536 None:intergenic 45.0%
TCGCAACGATTGAGGAAGAA+CGG - chr1_3:61027551-61027570 None:intergenic 45.0%
AAAATCCTCAACGGAGTCAC+CGG + chr1_3:61028287-61028306 Msa0130610:CDS 45.0%
! AGCATTGCTGTTAACTCTCC+CGG - chr1_3:61028323-61028342 None:intergenic 45.0%
GGAGAGTTAACAGCAATGCT+AGG + chr1_3:61028323-61028342 Msa0130610:CDS 45.0%
TTACCCTCACTTAACGGTGT+TGG + chr1_3:61028493-61028512 Msa0130610:CDS 45.0%
GTTTCCAACACCGTTAAGTG+AGG - chr1_3:61028500-61028519 None:intergenic 45.0%
TCTTCACGCGTAAGTGTCTT+GGG - chr1_3:61028551-61028570 None:intergenic 45.0%
TTCTTCACGCGTAAGTGTCT+TGG - chr1_3:61028552-61028571 None:intergenic 45.0%
GACACTTACGCGTGAAGAAA+AGG + chr1_3:61028553-61028572 Msa0130610:CDS 45.0%
! GAGGATGTATGGGACTTTTC+CGG + chr1_3:61028639-61028658 Msa0130610:CDS 45.0%
! AGGATGTATGGGACTTTTCC+GGG + chr1_3:61028640-61028659 Msa0130610:CDS 45.0%
TCGGGTTCACCAACATTTCT+TGG - chr1_3:61028703-61028722 None:intergenic 45.0%
! CGAAACAATAAGTTGAGCCG+TGG - chr1_3:61028768-61028787 None:intergenic 45.0%
TGTTTCGGTTCTTCGAGGTT+TGG + chr1_3:61028781-61028800 Msa0130610:CDS 45.0%
AGCCTTCAAGTCGGTTGTAT+AGG + chr1_3:61028840-61028859 Msa0130610:CDS 45.0%
! TTATAGTGGTAATGCGGGTC+GGG + chr1_3:61028904-61028923 Msa0130610:CDS 45.0%
AAAACCCGGAACAAACCCAA+CGG - chr1_3:61028948-61028967 None:intergenic 45.0%
TTGGGAGTGATACTGAAAGG+GGG + chr1_3:61029401-61029420 Msa0130610:intron 45.0%
GCACATTAACACTGAACCAC+TGG + chr1_3:61030133-61030152 Msa0130610:CDS 45.0%
CCTCTTGATGCAAAAACCAG+TGG - chr1_3:61030152-61030171 None:intergenic 45.0%
!!! CCACTGGTTTTTGCATCAAG+AGG + chr1_3:61030149-61030168 Msa0130610:CDS 45.0%
! ACCAATGGAACACAAGTTGG+TGG + chr1_3:61030303-61030322 Msa0130610:CDS 45.0%
!! CCAATGGAACACAAGTTGGT+GGG + chr1_3:61030304-61030323 Msa0130610:CDS 45.0%
!! AAGTTGGTGGGAGCAATTCA+AGG + chr1_3:61030316-61030335 Msa0130610:CDS 45.0%
AAAGGGGTTTACAAGAGAGG+AGG + chr1_3:61030348-61030367 Msa0130610:CDS 45.0%
TCCCTCACACATACAAGATC+AGG + chr1_3:61030451-61030470 Msa0130610:CDS 45.0%
AGGGAAGAATCCCCAAAAGA+TGG - chr1_3:61030739-61030758 None:intergenic 45.0%
TGCAATCTTTGCATTTCCGC+TGG + chr1_3:61030767-61030786 Msa0130610:CDS 45.0%
GATGGTAGGAGACTTACCAA+TGG + chr1_3:61030857-61030876 Msa0130610:CDS 45.0%
GTAGGAAGAACAAGCTCCAT+TGG - chr1_3:61030876-61030895 None:intergenic 45.0%
GTTCTGGTCTCTCAAGGAAT+AGG + chr1_3:61030984-61031003 Msa0130610:CDS 45.0%
CAAGGAATAGGCTTAGCACT+TGG + chr1_3:61030996-61031015 Msa0130610:CDS 45.0%
!! AGCACTTGGTGCAATTCTCA+TGG + chr1_3:61031010-61031029 Msa0130610:CDS 45.0%
GTAGAGAAGGGTTGCATTGT+AGG + chr1_3:61031210-61031229 Msa0130610:CDS 45.0%
! GCTCCAAACATTTTACGGCA+GGG - chr1_3:61031247-61031266 None:intergenic 45.0%
! AGCTCCAAACATTTTACGGC+AGG - chr1_3:61031248-61031267 None:intergenic 45.0%
! GCCGTAAAATGTTTGGAGCT+TGG + chr1_3:61031248-61031267 Msa0130610:CDS 45.0%
TGGTAATATGTGGGGAGATG+TGG + chr1_3:61031268-61031287 Msa0130610:CDS 45.0%
CTAACTCTAACTGGCACATC+TGG - chr1_3:61031741-61031760 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr1_3:61031831-61031850 Msa0130610:three_prime_UTR 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + chr1_3:61031832-61031851 Msa0130610:three_prime_UTR 45.0%
ACATTCCCCCATCCAAACAA+TGG - chr1_3:61031900-61031919 None:intergenic 45.0%
!!! CTTTTATATTTAATAATTTA+GGG + chr1_3:61029106-61029125 Msa0130610:intron 5.0%
!! TGTTAAATAATTAATAATAA+AGG + chr1_3:61029474-61029493 Msa0130610:intron 5.0%
GCTCTCCGTTCTGTTTGTGT+TGG - chr1_3:61027410-61027429 None:intergenic 50.0%
TCCATCCATGGTGAACCAGA+TGG + chr1_3:61027433-61027452 Msa0130610:CDS 50.0%
! ACCATCTGGTTCACCATGGA+TGG - chr1_3:61027437-61027456 None:intergenic 50.0%
GTAACTGGTCGCAACGATTG+AGG - chr1_3:61027559-61027578 None:intergenic 50.0%
CGGCAAAACCACCCTACTAA+CGG + chr1_3:61028358-61028377 Msa0130610:CDS 50.0%
! GACTTTTCCGGCAAGTCTTC+CGG - chr1_3:61028390-61028409 None:intergenic 50.0%
AGACTTGCCGGAAAAGTCAC+CGG + chr1_3:61028392-61028411 Msa0130610:CDS 50.0%
! AAGTCTCAAGAGTGCGGTGT+AGG - chr1_3:61028528-61028547 None:intergenic 50.0%
CTTGGGAAGTCTCAAGAGTG+CGG - chr1_3:61028534-61028553 None:intergenic 50.0%
AAAAGGTCGAACACACGGAG+AGG + chr1_3:61028570-61028589 Msa0130610:CDS 50.0%
GAGAGGATAATCACCGAGCT+TGG + chr1_3:61028587-61028606 Msa0130610:CDS 50.0%
ACTCCGGTTGGAGGATGTAT+GGG + chr1_3:61028629-61028648 Msa0130610:CDS 50.0%
AGTCCCATACATCCTCCAAC+CGG - chr1_3:61028635-61028654 None:intergenic 50.0%
! GGATGTATGGGACTTTTCCG+GGG + chr1_3:61028641-61028660 Msa0130610:CDS 50.0%
! CATCCTTTTTCTCTCCCCAC+CGG - chr1_3:61028672-61028691 None:intergenic 50.0%
GTTGAGTCCAAACCGGAAGT+CGG - chr1_3:61028746-61028765 None:intergenic 50.0%
!! TTCCGGTTTGGACTCAACCA+CGG + chr1_3:61028748-61028767 Msa0130610:CDS 50.0%
! TGGATCCGTTGGGTTTGTTC+CGG + chr1_3:61028940-61028959 Msa0130610:CDS 50.0%
CCCACCAACTTGTGTTCCAT+TGG - chr1_3:61030307-61030326 None:intergenic 50.0%
ACTATCACCTACTGGATGGG+TGG + chr1_3:61030906-61030925 Msa0130610:CDS 50.0%
CTTAAGACCACCCATCCAGT+AGG - chr1_3:61030916-61030935 None:intergenic 50.0%
CGGCACTTACACTTCCATAC+TGG - chr1_3:61031507-61031526 None:intergenic 50.0%
ACGGAGAGCAACTCCATCCA+TGG + chr1_3:61027421-61027440 Msa0130610:CDS 55.0%
ACAGCAATGCTAGGACCCTC+AGG + chr1_3:61028332-61028351 Msa0130610:CDS 55.0%
CAGCAATGCTAGGACCCTCA+GGG + chr1_3:61028333-61028352 Msa0130610:CDS 55.0%
!! TCACCGAGCTTGGCCTTACA+CGG + chr1_3:61028597-61028616 Msa0130610:CDS 55.0%
! ATCCTCCAACCGGAGTGTTC+CGG - chr1_3:61028625-61028644 None:intergenic 55.0%
CACTCCGGTTGGAGGATGTA+TGG + chr1_3:61028628-61028647 Msa0130610:CDS 55.0%
! GGACTTTTCCGGGGAATCTC+CGG + chr1_3:61028650-61028669 Msa0130610:CDS 55.0%
! TTTTCCGGGGAATCTCCGGT+GGG + chr1_3:61028654-61028673 Msa0130610:CDS 55.0%
TCTCCGGTGGGGAGAGAAAA+AGG + chr1_3:61028666-61028685 Msa0130610:CDS 55.0%
! GGATGAACCGACTTCCGGTT+TGG + chr1_3:61028736-61028755 Msa0130610:CDS 55.0%
AGCCGTGGTTGAGTCCAAAC+CGG - chr1_3:61028753-61028772 None:intergenic 55.0%
CGGTTCTTCGAGGTTTGGCT+CGG + chr1_3:61028786-61028805 Msa0130610:CDS 55.0%
! GGATCCGTTGGGTTTGTTCC+GGG + chr1_3:61028941-61028960 Msa0130610:CDS 55.0%
CCAGAGGAGTCCTGAGAGAA+TGG - chr1_3:61030420-61030439 None:intergenic 55.0%
CCATTCTCTCAGGACTCCTC+TGG + chr1_3:61030417-61030436 Msa0130610:CDS 55.0%
TTCTCTCAGGACTCCTCTGG+TGG + chr1_3:61030420-61030439 Msa0130610:CDS 55.0%
TGGGGCAGCCTAAATGCCTA+AGG + chr1_3:61031348-61031367 Msa0130610:CDS 55.0%
AGTCACCGGAGTGGCAAGAC+CGG + chr1_3:61028301-61028320 Msa0130610:CDS 60.0%
ATGCTAGGACCCTCAGGGAG+CGG + chr1_3:61028338-61028357 Msa0130610:CDS 60.0%
!! GTGGTTTTGCCGCTCCCTGA+GGG - chr1_3:61028350-61028369 None:intergenic 60.0%
ACCCTACTAACGGCCCTAGC+CGG + chr1_3:61028368-61028387 Msa0130610:CDS 60.0%
TCCGGCTAGGGCCGTTAGTA+GGG - chr1_3:61028372-61028391 None:intergenic 60.0%
TTCCGGCTAGGGCCGTTAGT+AGG - chr1_3:61028373-61028392 None:intergenic 60.0%
TCCGGCAAGTCTTCCGGCTA+GGG - chr1_3:61028384-61028403 None:intergenic 60.0%
TTCCGGCAAGTCTTCCGGCT+AGG - chr1_3:61028385-61028404 None:intergenic 60.0%
GCACCGTGTAAGGCCAAGCT+CGG - chr1_3:61028603-61028622 None:intergenic 60.0%
!! AGCTTGGCCTTACACGGTGC+CGG + chr1_3:61028603-61028622 Msa0130610:CDS 60.0%
GAGTGTTCCGGCACCGTGTA+AGG - chr1_3:61028613-61028632 None:intergenic 60.0%
! TACACGGTGCCGGAACACTC+CGG + chr1_3:61028613-61028632 Msa0130610:CDS 60.0%
! CTTTTCCGGGGAATCTCCGG+TGG + chr1_3:61028653-61028672 Msa0130610:CDS 60.0%
TTTCCGGGGAATCTCCGGTG+GGG + chr1_3:61028655-61028674 Msa0130610:CDS 60.0%
!! CTTCGAGGTTTGGCTCGGTC+CGG + chr1_3:61028791-61028810 Msa0130610:CDS 60.0%
! AGGGATCAGAGTGCCACCAG+AGG - chr1_3:61030436-61030455 None:intergenic 60.0%
CCACTCCGGTGACTCCGTTG+AGG - chr1_3:61028295-61028314 None:intergenic 65.0%
CCTCAACGGAGTCACCGGAG+TGG + chr1_3:61028292-61028311 Msa0130610:CDS 65.0%
GTCACCGGAGTGGCAAGACC+GGG + chr1_3:61028302-61028321 Msa0130610:CDS 65.0%
CTCTCCCGGTCTTGCCACTC+CGG - chr1_3:61028309-61028328 None:intergenic 65.0%
!! GGTGGTTTTGCCGCTCCCTG+AGG - chr1_3:61028351-61028370 None:intergenic 65.0%
GGCTAGGGCCGTTAGTAGGG+TGG - chr1_3:61028369-61028388 None:intergenic 65.0%
GCCCTAGCCGGAAGACTTGC+CGG + chr1_3:61028380-61028399 Msa0130610:CDS 65.0%
TGCCGGAACACTCCGGTTGG+AGG + chr1_3:61028620-61028639 Msa0130610:CDS 65.0%
TCTCCCCACCGGAGATTCCC+CGG - chr1_3:61028661-61028680 None:intergenic 65.0%
! CGGTGCCGGAACACTCCGGT+TGG + chr1_3:61028617-61028636 Msa0130610:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61027163 61032038 61027163 ID=Msa0130610;Name=Msa0130610
chr1_3 mRNA 61027163 61032038 61027163 ID=Msa0130610-mRNA-1;Parent=Msa0130610;Name=Msa0130610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=192|1|1|1|0.8|0.66|6|638|685
chr1_3 exon 61027163 61027585 61027163 ID=Msa0130610-mRNA-1:exon:20160;Parent=Msa0130610-mRNA-1
chr1_3 exon 61028203 61029010 61028203 ID=Msa0130610-mRNA-1:exon:20161;Parent=Msa0130610-mRNA-1
chr1_3 exon 61030009 61030182 61030009 ID=Msa0130610-mRNA-1:exon:20162;Parent=Msa0130610-mRNA-1
chr1_3 exon 61030291 61030472 61030291 ID=Msa0130610-mRNA-1:exon:20163;Parent=Msa0130610-mRNA-1
chr1_3 exon 61030714 61031801 61030714 ID=Msa0130610-mRNA-1:exon:20164;Parent=Msa0130610-mRNA-1
chr1_3 exon 61031826 61032038 61031826 ID=Msa0130610-mRNA-1:exon:20165;Parent=Msa0130610-mRNA-1
chr1_3 five_prime_UTR 61027163 61027354 61027163 ID=Msa0130610-mRNA-1:five_prime_utr;Parent=Msa0130610-mRNA-1
chr1_3 CDS 61027355 61027585 61027355 ID=Msa0130610-mRNA-1:cds;Parent=Msa0130610-mRNA-1
chr1_3 CDS 61028203 61029010 61028203 ID=Msa0130610-mRNA-1:cds;Parent=Msa0130610-mRNA-1
chr1_3 CDS 61030009 61030182 61030009 ID=Msa0130610-mRNA-1:cds;Parent=Msa0130610-mRNA-1
chr1_3 CDS 61030291 61030472 61030291 ID=Msa0130610-mRNA-1:cds;Parent=Msa0130610-mRNA-1
chr1_3 CDS 61030714 61031376 61030714 ID=Msa0130610-mRNA-1:cds;Parent=Msa0130610-mRNA-1
chr1_3 three_prime_UTR 61031377 61031801 61031377 ID=Msa0130610-mRNA-1:three_prime_utr;Parent=Msa0130610-mRNA-1
chr1_3 three_prime_UTR 61031826 61032038 61031826 ID=Msa0130610-mRNA-1:three_prime_utr;Parent=Msa0130610-mRNA-1
Gene Sequence

>Msa0130610

ATGATGCCCCCTGAGCAAGAAAAAACTATTAATGCACCAAATAACAACTCACCCAACACAAACAGAACGGAGAGCAACTCCATCCATGGTGAACCAGATGGTTCTTCTTCTAACAAAGTTAAACCAAGTTTGGATATTGATCACAACGCCATTAATATTCCTTCTCATCCAACTACACCACTCACATCATTTTCCGTTCTTCCTCAATCGTTGCGACCAGTTACACTCAAATTTGAAGATGTTTCATACAGCATAACCATGACAAACCAAAAGAAAAACGGCTGCGTTTTGGGCAAAGAATCAAAAGTAACTAGAAAAATCCTCAACGGAGTCACCGGAGTGGCAAGACCGGGAGAGTTAACAGCAATGCTAGGACCCTCAGGGAGCGGCAAAACCACCCTACTAACGGCCCTAGCCGGAAGACTTGCCGGAAAAGTCACCGGAACAATAACATACAACGGAAACTCAGACTCATCCTGCATGAAACGCAAAATAGGATTTGTTTCTCAAGACGATGTAGTTTACCCTCACTTAACGGTGTTGGAAACATTAACCTACACCGCACTCTTGAGACTTCCCAAGACACTTACGCGTGAAGAAAAGGTCGAACACACGGAGAGGATAATCACCGAGCTTGGCCTTACACGGTGCCGGAACACTCCGGTTGGAGGATGTATGGGACTTTTCCGGGGAATCTCCGGTGGGGAGAGAAAAAGGATGAGTATTGGCCAAGAAATGTTGGTGAACCCGAGTTTATTGTTTTTGGATGAACCGACTTCCGGTTTGGACTCAACCACGGCTCAACTTATTGTTTCGGTTCTTCGAGGTTTGGCTCGGTCCGGTCGAACAGTTGTTACTACTATTCATCAGCCTTCAAGTCGGTTGTATAGGATGTTTGATAAAGTGGTGGTTTTGTCTGATGGGTATCCGATTTATAGTGGTAATGCGGGTCGGGTAATTGATTATCTTGGATCCGTTGGGTTTGTTCCGGGTTTTAACTTTGTTAATCCTGCTGATTTTCTCCTTGATCTTGCTAATGGCATAGTTGCTGATGTTAAACATGATGAGATAGAGCAGCATGATCATGATCAAGCCTCAGTGAAACAGTCACTAATTTCATCCTATAAGAAAAACTTATACCCTGCTCTTAAAGAAGATATTCAGCACATTAACACTGAACCACTGGTTTTTGCATCAAGAGGAACATCTAGACGTTCTTCTGATAACCAATGGAACACAAGTTGGTGGGAGCAATTCAAGGTTCTGCTTAAAAGGGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGTTTAAAGATTTTCCAAGTCTTGTCTGTTTCCATTCTCTCAGGACTCCTCTGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTAGGACTTCTATTCTTCTTCTCCATCTTTTGGGGATTCTTCCCTCTCTTCAATGCAATCTTTGCATTTCCGCTGGATAGACCAATGCTAAAAAAAGAAAGATCATCAGGGATGTACCATCTATCATCATACTATGTTGCTAGGATGGTAGGAGACTTACCAATGGAGCTTGTTCTTCCTACAATTTTTGTAACTATCACCTACTGGATGGGTGGTCTTAAGCCTTCACTAGTTACATTTGTATTAACCCTTTTGATCATGCTTTTCAATGTTCTGGTCTCTCAAGGAATAGGCTTAGCACTTGGTGCAATTCTCATGGATGTTAAGCAGGCAACAACTCTAGCTTCAGTGACAATGTTGGTTTTTCTTTTAGCTGGTGGTTACTACATTCAGAAAATGCCTTCTTTTATAGCTTGGTTAAAGTACTTTTCTTTCAGTCATTACTGTTATAAGCTGCTTGTAGGGGTTCAGTATTCAGTAAATGAGGTTTATGAATGTAGAGAAGGGTTGCATTGTAGGGCAAGAGATTTCCCTGCCGTAAAATGTTTGGAGCTTGGTAATATGTGGGGAGATGTGGCTGCATTGACTATAATGTTTGTTGGATACAGAGTTGTTGCATATTTAGCTTTGAGGATGGGGCAGCCTAAATGCCTAAGGACTTAA
Protein sequence

>Msa0130610

MMPPEQEKTINAPNNNSPNTNRTESNSIHGEPDGSSSNKVKPSLDIDHNAINIPSHPTTPLTSFSVLPQSLRPVTLKFEDVSYSITMTNQKKNGCVLGKESKVTRKILNGVTGVARPGELTAMLGPSGSGKTTLLTALAGRLAGKVTGTITYNGNSDSSCMKRKIGFVSQDDVVYPHLTVLETLTYTALLRLPKTLTREEKVEHTERIITELGLTRCRNTPVGGCMGLFRGISGGERKRMSIGQEMLVNPSLLFLDEPTSGLDSTTAQLIVSVLRGLARSGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGNAGRVIDYLGSVGFVPGFNFVNPADFLLDLANGIVADVKHDEIEQHDHDQASVKQSLISSYKKNLYPALKEDIQHINTEPLVFASRGTSRRSSDNQWNTSWWEQFKVLLKRGLQERRHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLKKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFSFSHYCYKLLVGVQYSVNEVYECREGLHCRARDFPAVKCLELGNMWGDVAALTIMFVGYRVVAYLALRMGQPKCLRT*