Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131250 | sp|K7WCI9|CPT3_SOLLC | 55.288 | 208 | 90 | 2 | 1 | 208 | 1 | 205 | 1.87e-81 | 253 |
| Msa0131250 | sp|K7WCI9|CPT3_SOLLC | 56.701 | 97 | 42 | 0 | 265 | 361 | 193 | 289 | 2.86e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131250 | G7I9J6 | 95.856 | 362 | 13 | 1 | 1 | 362 | 1 | 360 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069210 | Msa0131250 | 0.823616 | 1.258158e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131250 | MtrunA17_Chr1g0199941 | 95.856 | 362 | 13 | 1 | 1 | 362 | 1 | 360 | 0.0 | 717 |
| Msa0131250 | MtrunA17_Chr8g0370491 | 91.436 | 362 | 29 | 1 | 1 | 362 | 1 | 360 | 0.0 | 689 |
| Msa0131250 | MtrunA17_Chr5g0429771 | 33.333 | 162 | 95 | 3 | 28 | 186 | 73 | 224 | 5.44e-21 | 92.0 |
| Msa0131250 | MtrunA17_Chr5g0429791 | 33.663 | 101 | 57 | 3 | 33 | 132 | 81 | 172 | 1.64e-12 | 65.5 |
| Msa0131250 | MtrunA17_Chr5g0429781 | 48.148 | 54 | 28 | 0 | 299 | 352 | 81 | 134 | 1.17e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131250 | AT2G17570.1 | 61.202 | 183 | 71 | 0 | 6 | 188 | 12 | 194 | 3.98e-78 | 242 |
| Msa0131250 | AT2G17570.1 | 56.637 | 113 | 36 | 1 | 263 | 362 | 183 | 295 | 3.20e-35 | 130 |
| Msa0131250 | AT5G60510.1 | 45.665 | 173 | 93 | 1 | 10 | 181 | 12 | 184 | 5.53e-51 | 171 |
| Msa0131250 | AT5G60510.1 | 55.682 | 88 | 38 | 1 | 274 | 360 | 183 | 270 | 3.15e-25 | 103 |
| Msa0131250 | AT5G60500.1 | 44.253 | 174 | 96 | 1 | 9 | 181 | 10 | 183 | 1.28e-49 | 168 |
| Msa0131250 | AT5G60500.1 | 52.273 | 88 | 41 | 1 | 274 | 360 | 182 | 269 | 1.18e-23 | 99.0 |
| Msa0131250 | AT5G58770.1 | 30.061 | 163 | 106 | 3 | 33 | 192 | 77 | 234 | 5.27e-19 | 87.0 |
| Msa0131250 | AT5G58770.1 | 36.458 | 96 | 52 | 2 | 261 | 352 | 212 | 302 | 1.70e-11 | 65.1 |
| Msa0131250 | AT5G58784.1 | 29.221 | 154 | 102 | 2 | 33 | 186 | 70 | 216 | 3.06e-18 | 84.7 |
| Msa0131250 | AT5G58784.1 | 57.143 | 49 | 17 | 1 | 299 | 343 | 242 | 290 | 6.92e-12 | 65.9 |
| Msa0131250 | AT2G23410.1 | 30.872 | 149 | 97 | 2 | 33 | 179 | 70 | 214 | 4.89e-18 | 84.0 |
| Msa0131250 | AT5G58780.1 | 30.464 | 151 | 94 | 2 | 33 | 179 | 70 | 213 | 8.63e-18 | 83.2 |
| Msa0131250 | AT5G58782.1 | 29.252 | 147 | 101 | 1 | 33 | 179 | 57 | 200 | 8.17e-17 | 80.1 |
| Msa0131250 | AT5G58782.2 | 29.252 | 147 | 101 | 1 | 33 | 179 | 75 | 218 | 1.22e-16 | 80.1 |
| Msa0131250 | AT2G23400.2 | 34.579 | 107 | 67 | 1 | 33 | 139 | 70 | 173 | 2.54e-16 | 77.0 |
| Msa0131250 | AT2G23400.1 | 34.579 | 107 | 67 | 1 | 33 | 139 | 70 | 173 | 1.43e-15 | 76.6 |
Find 73 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATGTTTGAACCTCTTT+AGG | 0.235814 | 1_3:-62001665 | None:intergenic |
| TTCGTTCCATTTATCCTTGC+AGG | 0.257938 | 1_3:-62001912 | None:intergenic |
| CCTTAGATACTGTTATGAAT+TGG | 0.282278 | 1_3:+62001589 | Msa0131250:CDS |
| TGAATTTACAAGAATTAATC+AGG | 0.296880 | 1_3:+62001976 | Msa0131250:CDS |
| AAGAATCCTGCAAGGATAAA+TGG | 0.299149 | 1_3:+62001906 | Msa0131250:CDS |
| GAAGTTCGGATCAAGATATC+TGG | 0.320042 | 1_3:-62002283 | None:intergenic |
| GATATCTTGATCCGAACTTC+TGG | 0.321850 | 1_3:+62002286 | Msa0131250:CDS |
| ATTTCAGGCCAAAGTACTTT+TGG | 0.326293 | 1_3:-62002367 | None:intergenic |
| AAAGTACTTTGGCCTGAAAT+TGG | 0.327946 | 1_3:+62002370 | Msa0131250:CDS |
| GGCGTTAGATTACATTTCAT+TGG | 0.328915 | 1_3:+62001749 | Msa0131250:CDS |
| CCAATTCATAACAGTATCTA+AGG | 0.352493 | 1_3:-62001589 | None:intergenic |
| CTTAGATACTGTTATGAATT+GGG | 0.374432 | 1_3:+62001590 | Msa0131250:CDS |
| GATTGAAGAGTTGCTTCAAC+AGG | 0.381328 | 1_3:+62001706 | Msa0131250:CDS |
| AAGTGTCTCAGACCAATTTC+AGG | 0.406669 | 1_3:-62002382 | None:intergenic |
| TATTGAGAAGCACATGTATA+TGG | 0.413015 | 1_3:+62002246 | Msa0131250:CDS |
| ATTGGAAACTTTATCTACCT+TGG | 0.416512 | 1_3:-62001945 | None:intergenic |
| AACTATTGACCGAACCTGTC+AGG | 0.416742 | 1_3:+62001780 | Msa0131250:CDS |
| AAGCAATATGATTCGGTAAA+GGG | 0.434641 | 1_3:-62001475 | None:intergenic |
| TGTAAATTCACGTTCACCAT+TGG | 0.438910 | 1_3:-62001963 | None:intergenic |
| CATATTGCTTTCATCATGGA+TGG | 0.445076 | 1_3:+62001488 | Msa0131250:CDS |
| TGCGGCAACCCTGACAGGTT+CGG | 0.448612 | 1_3:-62001789 | None:intergenic |
| ATGTAGAGTACTACAAGCTT+TGG | 0.449398 | 1_3:-62002056 | None:intergenic |
| TGTCAGGGTTGCCGCAGAAA+AGG | 0.465583 | 1_3:+62001796 | Msa0131250:CDS |
| TAAAGGGCCGGCTGATAAAA+CGG | 0.470361 | 1_3:-62001459 | None:intergenic |
| TGTATGCACCAAAAGTACTT+TGG | 0.470623 | 1_3:+62002359 | Msa0131250:CDS |
| AAATTAAAAGAACTCTCTCT+TGG | 0.473033 | 1_3:-62001841 | None:intergenic |
| GGGAGAAGGTGATGGTCATA+AGG | 0.475500 | 1_3:+62001541 | Msa0131250:CDS |
| TAAAGAGGTTCAAACATTCA+TGG | 0.476162 | 1_3:+62001667 | Msa0131250:CDS |
| AAAGCAATATGATTCGGTAA+AGG | 0.479272 | 1_3:-62001476 | None:intergenic |
| GAATCATATTGCTTTCATCA+TGG | 0.485927 | 1_3:+62001484 | Msa0131250:CDS |
| AGTATTACAAGCCACTTGCT+TGG | 0.487854 | 1_3:+62001401 | Msa0131250:CDS |
| GACGTGCCTCTCCAGAAGTT+CGG | 0.488831 | 1_3:-62002297 | None:intergenic |
| GAAACTTTATCTACCTTGGA+TGG | 0.495222 | 1_3:-62001941 | None:intergenic |
| AACATTCATGGAATTGATGC+GGG | 0.495749 | 1_3:+62001679 | Msa0131250:CDS |
| ATGATGAAAGCAATATGATT+CGG | 0.505722 | 1_3:-62001482 | None:intergenic |
| GAAAGCATTATTAATGAATA+CGG | 0.506500 | 1_3:+62001728 | Msa0131250:CDS |
| ATTACAAGCCACTTGCTTGG+AGG | 0.512105 | 1_3:+62001404 | Msa0131250:CDS |
| GAAGGTGATGGTCATAAGGC+TGG | 0.513463 | 1_3:+62001545 | Msa0131250:CDS |
| TTTCAGAAGGAAGCCTAAAG+AGG | 0.513566 | 1_3:+62001652 | Msa0131250:CDS |
| GTGAAATCACATCTTGCAAT+GGG | 0.514784 | 1_3:+62002158 | Msa0131250:CDS |
| CGGATCAAGATATCTGGGTC+AGG | 0.521553 | 1_3:-62002277 | None:intergenic |
| ACTCTAATGCAGAAAAGTGC+GGG | 0.540959 | 1_3:+62001377 | None:intergenic |
| AATCAGGGCCCGAAAAGAAA+CGG | 0.557633 | 1_3:+62001992 | Msa0131250:CDS |
| AGAAACATGGGAGAAGGTGA+TGG | 0.578866 | 1_3:+62001533 | Msa0131250:CDS |
| GAACGAAATTCAACCATCCA+AGG | 0.582528 | 1_3:+62001928 | Msa0131250:CDS |
| AAGTTCGGATCAAGATATCT+GGG | 0.585089 | 1_3:-62002282 | None:intergenic |
| GAAGCACATGTATATGGCAG+TGG | 0.585091 | 1_3:+62002252 | Msa0131250:CDS |
| CATAGCAATAATTACAGTGA+AGG | 0.585182 | 1_3:+62002136 | Msa0131250:CDS |
| ATGGGAATCGAAGGTATGCT+AGG | 0.585314 | 1_3:+62001507 | Msa0131250:CDS |
| ATATTGCTTTCATCATGGAT+GGG | 0.586307 | 1_3:+62001489 | Msa0131250:CDS |
| TGAAATTGGTCTGAGACACT+TGG | 0.588657 | 1_3:+62002384 | Msa0131250:CDS |
| AGGAGGAGAAACATGGGAGA+AGG | 0.592594 | 1_3:+62001527 | Msa0131250:CDS |
| AATATAAACCTCCAAGCAAG+TGG | 0.593519 | 1_3:-62001412 | None:intergenic |
| AACTCTCTCTTGGTTGTGTG+CGG | 0.593794 | 1_3:-62001831 | None:intergenic |
| AAACATTCATGGAATTGATG+CGG | 0.594151 | 1_3:+62001678 | Msa0131250:CDS |
| ACTATTGACCGAACCTGTCA+GGG | 0.598793 | 1_3:+62001781 | Msa0131250:CDS |
| GTATGCTAGGAGGAGAAACA+TGG | 0.611091 | 1_3:+62001520 | Msa0131250:CDS |
| AAGGTAGATAAAGTTTCCAA+TGG | 0.611134 | 1_3:+62001947 | Msa0131250:CDS |
| TCAGCATTGATAATTTCAGA+AGG | 0.613884 | 1_3:+62001639 | Msa0131250:CDS |
| AATATGATTCGGTAAAGGGC+CGG | 0.614611 | 1_3:-62001471 | None:intergenic |
| GGTGAAATCACATCTTGCAA+TGG | 0.614662 | 1_3:+62002157 | Msa0131250:CDS |
| TACTCTAATGCAGAAAAGTG+CGG | 0.621882 | 1_3:+62001376 | None:intergenic |
| TTCATAACAGTATCTAAGGA+CGG | 0.633266 | 1_3:-62001585 | None:intergenic |
| TCATCATGGATGGGAATCGA+AGG | 0.636036 | 1_3:+62001498 | Msa0131250:CDS |
| GAAGAGCGAAAGTACAAGCA+TGG | 0.637636 | 1_3:+62002196 | Msa0131250:CDS |
| AATCACATCTTGCAATGGGA+CGG | 0.641231 | 1_3:+62002162 | Msa0131250:CDS |
| TGCTGTTCAAGAATCCTGCA+AGG | 0.645018 | 1_3:+62001898 | Msa0131250:CDS |
| GAATTTACAAGAATTAATCA+GGG | 0.647383 | 1_3:+62001977 | Msa0131250:CDS |
| CTTGATCCGAACTTCTGGAG+AGG | 0.662499 | 1_3:+62002291 | Msa0131250:CDS |
| TGGTCTGAGACACTTGGTGT+GGG | 0.663899 | 1_3:+62002390 | Msa0131250:CDS |
| TTGGTCTGAGACACTTGGTG+TGG | 0.674555 | 1_3:+62002389 | Msa0131250:CDS |
| GGAATCGAAGGTATGCTAGG+AGG | 0.684483 | 1_3:+62001510 | Msa0131250:CDS |
| TATGCTAGGAGGAGAAACAT+GGG | 0.694842 | 1_3:+62001521 | Msa0131250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAGCATTATTAATGAATA+CGG | + | chr1_3:62001728-62001747 | Msa0131250:CDS | 20.0% |
| !! | TGAATTTACAAGAATTAATC+AGG | + | chr1_3:62001976-62001995 | Msa0131250:CDS | 20.0% |
| !! | GAATTTACAAGAATTAATCA+GGG | + | chr1_3:62001977-62001996 | Msa0131250:CDS | 20.0% |
| !!! | TTTTCTTTTCCAAGTAAAAA+TGG | - | chr1_3:62002438-62002457 | None:intergenic | 20.0% |
| !!! | GAAAGCATTATTAATGAATA+CGG | + | chr1_3:62001728-62001747 | Msa0131250:CDS | 20.0% |
| !! | TGAATTTACAAGAATTAATC+AGG | + | chr1_3:62001976-62001995 | Msa0131250:CDS | 20.0% |
| !! | GAATTTACAAGAATTAATCA+GGG | + | chr1_3:62001977-62001996 | Msa0131250:CDS | 20.0% |
| !!! | TTTTCTTTTCCAAGTAAAAA+TGG | - | chr1_3:62002438-62002457 | None:intergenic | 20.0% |
| ! | ATGATGAAAGCAATATGATT+CGG | - | chr1_3:62001485-62001504 | None:intergenic | 25.0% |
| ! | CTTAGATACTGTTATGAATT+GGG | + | chr1_3:62001590-62001609 | Msa0131250:CDS | 25.0% |
| ! | AAATTAAAAGAACTCTCTCT+TGG | - | chr1_3:62001844-62001863 | None:intergenic | 25.0% |
| ! | ATGATGAAAGCAATATGATT+CGG | - | chr1_3:62001485-62001504 | None:intergenic | 25.0% |
| ! | CTTAGATACTGTTATGAATT+GGG | + | chr1_3:62001590-62001609 | Msa0131250:CDS | 25.0% |
| ! | AAATTAAAAGAACTCTCTCT+TGG | - | chr1_3:62001844-62001863 | None:intergenic | 25.0% |
| !! | AAGCAATATGATTCGGTAAA+GGG | - | chr1_3:62001478-62001497 | None:intergenic | 30.0% |
| !! | AAAGCAATATGATTCGGTAA+AGG | - | chr1_3:62001479-62001498 | None:intergenic | 30.0% |
| GAATCATATTGCTTTCATCA+TGG | + | chr1_3:62001484-62001503 | Msa0131250:CDS | 30.0% | |
| ATATTGCTTTCATCATGGAT+GGG | + | chr1_3:62001489-62001508 | Msa0131250:CDS | 30.0% | |
| TTCATAACAGTATCTAAGGA+CGG | - | chr1_3:62001588-62001607 | None:intergenic | 30.0% | |
| CCAATTCATAACAGTATCTA+AGG | - | chr1_3:62001592-62001611 | None:intergenic | 30.0% | |
| CCTTAGATACTGTTATGAAT+TGG | + | chr1_3:62001589-62001608 | Msa0131250:CDS | 30.0% | |
| !! | TCAGCATTGATAATTTCAGA+AGG | + | chr1_3:62001639-62001658 | Msa0131250:CDS | 30.0% |
| ATGAATGTTTGAACCTCTTT+AGG | - | chr1_3:62001668-62001687 | None:intergenic | 30.0% | |
| TAAAGAGGTTCAAACATTCA+TGG | + | chr1_3:62001667-62001686 | Msa0131250:CDS | 30.0% | |
| AAACATTCATGGAATTGATG+CGG | + | chr1_3:62001678-62001697 | Msa0131250:CDS | 30.0% | |
| ATTGGAAACTTTATCTACCT+TGG | - | chr1_3:62001948-62001967 | None:intergenic | 30.0% | |
| AAGGTAGATAAAGTTTCCAA+TGG | + | chr1_3:62001947-62001966 | Msa0131250:CDS | 30.0% | |
| ! | AAATCAAGACCGTTTCTTTT+CGG | - | chr1_3:62002004-62002023 | None:intergenic | 30.0% |
| CATAGCAATAATTACAGTGA+AGG | + | chr1_3:62002136-62002155 | Msa0131250:CDS | 30.0% | |
| ! | TATTGAGAAGCACATGTATA+TGG | + | chr1_3:62002246-62002265 | Msa0131250:CDS | 30.0% |
| ! | GTCTCAGTAATTTTCTTCTT+TGG | + | chr1_3:62002317-62002336 | Msa0131250:CDS | 30.0% |
| !! | AAGCAATATGATTCGGTAAA+GGG | - | chr1_3:62001478-62001497 | None:intergenic | 30.0% |
| !! | AAAGCAATATGATTCGGTAA+AGG | - | chr1_3:62001479-62001498 | None:intergenic | 30.0% |
| GAATCATATTGCTTTCATCA+TGG | + | chr1_3:62001484-62001503 | Msa0131250:CDS | 30.0% | |
| ATATTGCTTTCATCATGGAT+GGG | + | chr1_3:62001489-62001508 | Msa0131250:CDS | 30.0% | |
| TTCATAACAGTATCTAAGGA+CGG | - | chr1_3:62001588-62001607 | None:intergenic | 30.0% | |
| CCAATTCATAACAGTATCTA+AGG | - | chr1_3:62001592-62001611 | None:intergenic | 30.0% | |
| CCTTAGATACTGTTATGAAT+TGG | + | chr1_3:62001589-62001608 | Msa0131250:CDS | 30.0% | |
| !! | TCAGCATTGATAATTTCAGA+AGG | + | chr1_3:62001639-62001658 | Msa0131250:CDS | 30.0% |
| ATGAATGTTTGAACCTCTTT+AGG | - | chr1_3:62001668-62001687 | None:intergenic | 30.0% | |
| TAAAGAGGTTCAAACATTCA+TGG | + | chr1_3:62001667-62001686 | Msa0131250:CDS | 30.0% | |
| AAACATTCATGGAATTGATG+CGG | + | chr1_3:62001678-62001697 | Msa0131250:CDS | 30.0% | |
| ATTGGAAACTTTATCTACCT+TGG | - | chr1_3:62001948-62001967 | None:intergenic | 30.0% | |
| AAGGTAGATAAAGTTTCCAA+TGG | + | chr1_3:62001947-62001966 | Msa0131250:CDS | 30.0% | |
| ! | AAATCAAGACCGTTTCTTTT+CGG | - | chr1_3:62002004-62002023 | None:intergenic | 30.0% |
| CATAGCAATAATTACAGTGA+AGG | + | chr1_3:62002136-62002155 | Msa0131250:CDS | 30.0% | |
| ! | TATTGAGAAGCACATGTATA+TGG | + | chr1_3:62002246-62002265 | Msa0131250:CDS | 30.0% |
| ! | GTCTCAGTAATTTTCTTCTT+TGG | + | chr1_3:62002317-62002336 | Msa0131250:CDS | 30.0% |
| AATATAAACCTCCAAGCAAG+TGG | - | chr1_3:62001415-62001434 | None:intergenic | 35.0% | |
| !!! | ATATTTGCCGTTTTATCAGC+CGG | + | chr1_3:62001452-62001471 | Msa0131250:CDS | 35.0% |
| CATATTGCTTTCATCATGGA+TGG | + | chr1_3:62001488-62001507 | Msa0131250:CDS | 35.0% | |
| AACATTCATGGAATTGATGC+GGG | + | chr1_3:62001679-62001698 | Msa0131250:CDS | 35.0% | |
| GGCGTTAGATTACATTTCAT+TGG | + | chr1_3:62001749-62001768 | Msa0131250:CDS | 35.0% | |
| AAGAATCCTGCAAGGATAAA+TGG | + | chr1_3:62001906-62001925 | Msa0131250:CDS | 35.0% | |
| GAAACTTTATCTACCTTGGA+TGG | - | chr1_3:62001944-62001963 | None:intergenic | 35.0% | |
| TGTAAATTCACGTTCACCAT+TGG | - | chr1_3:62001966-62001985 | None:intergenic | 35.0% | |
| ! | AATCAAGACCGTTTCTTTTC+GGG | - | chr1_3:62002003-62002022 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACTACAAGCTT+TGG | - | chr1_3:62002059-62002078 | None:intergenic | 35.0% |
| GTGAAATCACATCTTGCAAT+GGG | + | chr1_3:62002158-62002177 | Msa0131250:CDS | 35.0% | |
| AAGTTCGGATCAAGATATCT+GGG | - | chr1_3:62002285-62002304 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTGCATACAAA+GGG | - | chr1_3:62002357-62002376 | None:intergenic | 35.0% |
| !! | AGTACTTTTGGTGCATACAA+AGG | - | chr1_3:62002358-62002377 | None:intergenic | 35.0% |
| !! | TGTATGCACCAAAAGTACTT+TGG | + | chr1_3:62002359-62002378 | Msa0131250:CDS | 35.0% |
| !! | ATTTCAGGCCAAAGTACTTT+TGG | - | chr1_3:62002370-62002389 | None:intergenic | 35.0% |
| ! | AAAGTACTTTGGCCTGAAAT+TGG | + | chr1_3:62002370-62002389 | Msa0131250:CDS | 35.0% |
| !! | TCAGAGACACCATTTTTACT+TGG | + | chr1_3:62002426-62002445 | Msa0131250:CDS | 35.0% |
| AATATAAACCTCCAAGCAAG+TGG | - | chr1_3:62001415-62001434 | None:intergenic | 35.0% | |
| !!! | ATATTTGCCGTTTTATCAGC+CGG | + | chr1_3:62001452-62001471 | Msa0131250:CDS | 35.0% |
| CATATTGCTTTCATCATGGA+TGG | + | chr1_3:62001488-62001507 | Msa0131250:CDS | 35.0% | |
| AACATTCATGGAATTGATGC+GGG | + | chr1_3:62001679-62001698 | Msa0131250:CDS | 35.0% | |
| GGCGTTAGATTACATTTCAT+TGG | + | chr1_3:62001749-62001768 | Msa0131250:CDS | 35.0% | |
| AAGAATCCTGCAAGGATAAA+TGG | + | chr1_3:62001906-62001925 | Msa0131250:CDS | 35.0% | |
| GAAACTTTATCTACCTTGGA+TGG | - | chr1_3:62001944-62001963 | None:intergenic | 35.0% | |
| TGTAAATTCACGTTCACCAT+TGG | - | chr1_3:62001966-62001985 | None:intergenic | 35.0% | |
| ! | AATCAAGACCGTTTCTTTTC+GGG | - | chr1_3:62002003-62002022 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACTACAAGCTT+TGG | - | chr1_3:62002059-62002078 | None:intergenic | 35.0% |
| GTGAAATCACATCTTGCAAT+GGG | + | chr1_3:62002158-62002177 | Msa0131250:CDS | 35.0% | |
| AAGTTCGGATCAAGATATCT+GGG | - | chr1_3:62002285-62002304 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTGCATACAAA+GGG | - | chr1_3:62002357-62002376 | None:intergenic | 35.0% |
| !! | AGTACTTTTGGTGCATACAA+AGG | - | chr1_3:62002358-62002377 | None:intergenic | 35.0% |
| !! | TGTATGCACCAAAAGTACTT+TGG | + | chr1_3:62002359-62002378 | Msa0131250:CDS | 35.0% |
| !! | ATTTCAGGCCAAAGTACTTT+TGG | - | chr1_3:62002370-62002389 | None:intergenic | 35.0% |
| ! | AAAGTACTTTGGCCTGAAAT+TGG | + | chr1_3:62002370-62002389 | Msa0131250:CDS | 35.0% |
| !! | TCAGAGACACCATTTTTACT+TGG | + | chr1_3:62002426-62002445 | Msa0131250:CDS | 35.0% |
| AGTATTACAAGCCACTTGCT+TGG | + | chr1_3:62001401-62001420 | Msa0131250:CDS | 40.0% | |
| !! | AATATGATTCGGTAAAGGGC+CGG | - | chr1_3:62001474-62001493 | None:intergenic | 40.0% |
| TATGCTAGGAGGAGAAACAT+GGG | + | chr1_3:62001521-62001540 | Msa0131250:CDS | 40.0% | |
| TTTCAGAAGGAAGCCTAAAG+AGG | + | chr1_3:62001652-62001671 | Msa0131250:CDS | 40.0% | |
| GATTGAAGAGTTGCTTCAAC+AGG | + | chr1_3:62001706-62001725 | Msa0131250:CDS | 40.0% | |
| ! | AACTCTCATTGCCTTTTCTG+CGG | - | chr1_3:62001810-62001829 | None:intergenic | 40.0% |
| TTCGTTCCATTTATCCTTGC+AGG | - | chr1_3:62001915-62001934 | None:intergenic | 40.0% | |
| GAACGAAATTCAACCATCCA+AGG | + | chr1_3:62001928-62001947 | Msa0131250:CDS | 40.0% | |
| GGTGAAATCACATCTTGCAA+TGG | + | chr1_3:62002157-62002176 | Msa0131250:CDS | 40.0% | |
| AATCACATCTTGCAATGGGA+CGG | + | chr1_3:62002162-62002181 | Msa0131250:CDS | 40.0% | |
| GAAGTTCGGATCAAGATATC+TGG | - | chr1_3:62002286-62002305 | None:intergenic | 40.0% | |
| GATATCTTGATCCGAACTTC+TGG | + | chr1_3:62002286-62002305 | Msa0131250:CDS | 40.0% | |
| AAGTGTCTCAGACCAATTTC+AGG | - | chr1_3:62002385-62002404 | None:intergenic | 40.0% | |
| ! | TGAAATTGGTCTGAGACACT+TGG | + | chr1_3:62002384-62002403 | Msa0131250:CDS | 40.0% |
| AGTATTACAAGCCACTTGCT+TGG | + | chr1_3:62001401-62001420 | Msa0131250:CDS | 40.0% | |
| !! | AATATGATTCGGTAAAGGGC+CGG | - | chr1_3:62001474-62001493 | None:intergenic | 40.0% |
| TATGCTAGGAGGAGAAACAT+GGG | + | chr1_3:62001521-62001540 | Msa0131250:CDS | 40.0% | |
| TTTCAGAAGGAAGCCTAAAG+AGG | + | chr1_3:62001652-62001671 | Msa0131250:CDS | 40.0% | |
| GATTGAAGAGTTGCTTCAAC+AGG | + | chr1_3:62001706-62001725 | Msa0131250:CDS | 40.0% | |
| ! | AACTCTCATTGCCTTTTCTG+CGG | - | chr1_3:62001810-62001829 | None:intergenic | 40.0% |
| TTCGTTCCATTTATCCTTGC+AGG | - | chr1_3:62001915-62001934 | None:intergenic | 40.0% | |
| GAACGAAATTCAACCATCCA+AGG | + | chr1_3:62001928-62001947 | Msa0131250:CDS | 40.0% | |
| GGTGAAATCACATCTTGCAA+TGG | + | chr1_3:62002157-62002176 | Msa0131250:CDS | 40.0% | |
| AATCACATCTTGCAATGGGA+CGG | + | chr1_3:62002162-62002181 | Msa0131250:CDS | 40.0% | |
| GAAGTTCGGATCAAGATATC+TGG | - | chr1_3:62002286-62002305 | None:intergenic | 40.0% | |
| GATATCTTGATCCGAACTTC+TGG | + | chr1_3:62002286-62002305 | Msa0131250:CDS | 40.0% | |
| AAGTGTCTCAGACCAATTTC+AGG | - | chr1_3:62002385-62002404 | None:intergenic | 40.0% | |
| ! | TGAAATTGGTCTGAGACACT+TGG | + | chr1_3:62002384-62002403 | Msa0131250:CDS | 40.0% |
| ATTACAAGCCACTTGCTTGG+AGG | + | chr1_3:62001404-62001423 | Msa0131250:CDS | 45.0% | |
| TAAAGGGCCGGCTGATAAAA+CGG | - | chr1_3:62001462-62001481 | None:intergenic | 45.0% | |
| TCATCATGGATGGGAATCGA+AGG | + | chr1_3:62001498-62001517 | Msa0131250:CDS | 45.0% | |
| ! | ATGGGAATCGAAGGTATGCT+AGG | + | chr1_3:62001507-62001526 | Msa0131250:CDS | 45.0% |
| GTATGCTAGGAGGAGAAACA+TGG | + | chr1_3:62001520-62001539 | Msa0131250:CDS | 45.0% | |
| AGAAACATGGGAGAAGGTGA+TGG | + | chr1_3:62001533-62001552 | Msa0131250:CDS | 45.0% | |
| AACTATTGACCGAACCTGTC+AGG | + | chr1_3:62001780-62001799 | Msa0131250:CDS | 45.0% | |
| ACTATTGACCGAACCTGTCA+GGG | + | chr1_3:62001781-62001800 | Msa0131250:CDS | 45.0% | |
| AACTCTCTCTTGGTTGTGTG+CGG | - | chr1_3:62001834-62001853 | None:intergenic | 45.0% | |
| TGCTGTTCAAGAATCCTGCA+AGG | + | chr1_3:62001898-62001917 | Msa0131250:CDS | 45.0% | |
| AATCAGGGCCCGAAAAGAAA+CGG | + | chr1_3:62001992-62002011 | Msa0131250:CDS | 45.0% | |
| ! | GAAGAGCGAAAGTACAAGCA+TGG | + | chr1_3:62002196-62002215 | Msa0131250:CDS | 45.0% |
| GAAGCACATGTATATGGCAG+TGG | + | chr1_3:62002252-62002271 | Msa0131250:CDS | 45.0% | |
| ATTACAAGCCACTTGCTTGG+AGG | + | chr1_3:62001404-62001423 | Msa0131250:CDS | 45.0% | |
| TAAAGGGCCGGCTGATAAAA+CGG | - | chr1_3:62001462-62001481 | None:intergenic | 45.0% | |
| TCATCATGGATGGGAATCGA+AGG | + | chr1_3:62001498-62001517 | Msa0131250:CDS | 45.0% | |
| ! | ATGGGAATCGAAGGTATGCT+AGG | + | chr1_3:62001507-62001526 | Msa0131250:CDS | 45.0% |
| GTATGCTAGGAGGAGAAACA+TGG | + | chr1_3:62001520-62001539 | Msa0131250:CDS | 45.0% | |
| AGAAACATGGGAGAAGGTGA+TGG | + | chr1_3:62001533-62001552 | Msa0131250:CDS | 45.0% | |
| AACTATTGACCGAACCTGTC+AGG | + | chr1_3:62001780-62001799 | Msa0131250:CDS | 45.0% | |
| ACTATTGACCGAACCTGTCA+GGG | + | chr1_3:62001781-62001800 | Msa0131250:CDS | 45.0% | |
| AACTCTCTCTTGGTTGTGTG+CGG | - | chr1_3:62001834-62001853 | None:intergenic | 45.0% | |
| TGCTGTTCAAGAATCCTGCA+AGG | + | chr1_3:62001898-62001917 | Msa0131250:CDS | 45.0% | |
| AATCAGGGCCCGAAAAGAAA+CGG | + | chr1_3:62001992-62002011 | Msa0131250:CDS | 45.0% | |
| ! | GAAGAGCGAAAGTACAAGCA+TGG | + | chr1_3:62002196-62002215 | Msa0131250:CDS | 45.0% |
| GAAGCACATGTATATGGCAG+TGG | + | chr1_3:62002252-62002271 | Msa0131250:CDS | 45.0% | |
| ! | GGAATCGAAGGTATGCTAGG+AGG | + | chr1_3:62001510-62001529 | Msa0131250:CDS | 50.0% |
| AGGAGGAGAAACATGGGAGA+AGG | + | chr1_3:62001527-62001546 | Msa0131250:CDS | 50.0% | |
| ! | GGGAGAAGGTGATGGTCATA+AGG | + | chr1_3:62001541-62001560 | Msa0131250:CDS | 50.0% |
| ! | GAAGGTGATGGTCATAAGGC+TGG | + | chr1_3:62001545-62001564 | Msa0131250:CDS | 50.0% |
| CGGATCAAGATATCTGGGTC+AGG | - | chr1_3:62002280-62002299 | None:intergenic | 50.0% | |
| ! | CTTGATCCGAACTTCTGGAG+AGG | + | chr1_3:62002291-62002310 | Msa0131250:CDS | 50.0% |
| ! | TTGGTCTGAGACACTTGGTG+TGG | + | chr1_3:62002389-62002408 | Msa0131250:CDS | 50.0% |
| !! | TGGTCTGAGACACTTGGTGT+GGG | + | chr1_3:62002390-62002409 | Msa0131250:CDS | 50.0% |
| ! | GGAATCGAAGGTATGCTAGG+AGG | + | chr1_3:62001510-62001529 | Msa0131250:CDS | 50.0% |
| AGGAGGAGAAACATGGGAGA+AGG | + | chr1_3:62001527-62001546 | Msa0131250:CDS | 50.0% | |
| ! | GGGAGAAGGTGATGGTCATA+AGG | + | chr1_3:62001541-62001560 | Msa0131250:CDS | 50.0% |
| ! | GAAGGTGATGGTCATAAGGC+TGG | + | chr1_3:62001545-62001564 | Msa0131250:CDS | 50.0% |
| CGGATCAAGATATCTGGGTC+AGG | - | chr1_3:62002280-62002299 | None:intergenic | 50.0% | |
| ! | CTTGATCCGAACTTCTGGAG+AGG | + | chr1_3:62002291-62002310 | Msa0131250:CDS | 50.0% |
| ! | TTGGTCTGAGACACTTGGTG+TGG | + | chr1_3:62002389-62002408 | Msa0131250:CDS | 50.0% |
| !! | TGGTCTGAGACACTTGGTGT+GGG | + | chr1_3:62002390-62002409 | Msa0131250:CDS | 50.0% |
| ! | TTTTCTGCGGCAACCCTGAC+AGG | - | chr1_3:62001797-62001816 | None:intergenic | 55.0% |
| TGTCAGGGTTGCCGCAGAAA+AGG | + | chr1_3:62001796-62001815 | Msa0131250:CDS | 55.0% | |
| GACGTGCCTCTCCAGAAGTT+CGG | - | chr1_3:62002300-62002319 | None:intergenic | 55.0% | |
| ! | TTTTCTGCGGCAACCCTGAC+AGG | - | chr1_3:62001797-62001816 | None:intergenic | 55.0% |
| TGTCAGGGTTGCCGCAGAAA+AGG | + | chr1_3:62001796-62001815 | Msa0131250:CDS | 55.0% | |
| GACGTGCCTCTCCAGAAGTT+CGG | - | chr1_3:62002300-62002319 | None:intergenic | 55.0% | |
| TGCGGCAACCCTGACAGGTT+CGG | - | chr1_3:62001792-62001811 | None:intergenic | 60.0% | |
| TGCGGCAACCCTGACAGGTT+CGG | - | chr1_3:62001792-62001811 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62001383 | 62002471 | 62001383 | ID=Msa0131250;Name=Msa0131250 |
| chr1_3 | mRNA | 62001383 | 62002471 | 62001383 | ID=Msa0131250-mRNA-1;Parent=Msa0131250;Name=Msa0131250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|362 |
| chr1_3 | exon | 62001383 | 62002471 | 62001383 | ID=Msa0131250-mRNA-1:exon:20598;Parent=Msa0131250-mRNA-1 |
| chr1_3 | CDS | 62001383 | 62002471 | 62001383 | ID=Msa0131250-mRNA-1:cds;Parent=Msa0131250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
