Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069210 | XP_003591942.2 | 95.856 | 362 | 13 | 1 | 1 | 362 | 1 | 360 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069210 | sp|K7WCI9|CPT3_SOLLC | 55.288 | 208 | 90 | 2 | 1 | 208 | 1 | 205 | 1.87e-81 | 253 |
| Msa0069210 | sp|K7WCI9|CPT3_SOLLC | 56.701 | 97 | 42 | 0 | 265 | 361 | 193 | 289 | 2.86e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069210 | G7I9J6 | 95.856 | 362 | 13 | 1 | 1 | 362 | 1 | 360 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020930 | Msa0069210 | 0.805559 | 1.259119e-49 | -8.615850e-47 |
| Msa0037060 | Msa0069210 | 0.878893 | 1.941642e-69 | -8.615850e-47 |
| Msa0069210 | Msa0114060 | 0.802558 | 5.298658e-49 | -8.615850e-47 |
| Msa0069210 | Msa0131250 | 0.823616 | 1.258158e-53 | -8.615850e-47 |
| Msa0069210 | Msa0410650 | 0.811700 | 6.140217e-51 | -8.615850e-47 |
| Msa0069210 | Msa0481530 | 0.801071 | 1.070437e-48 | -8.615850e-47 |
| Msa0069210 | Msa0507680 | 0.820042 | 8.452336e-53 | -8.615850e-47 |
| Msa0069210 | Msa0557070 | 0.803450 | 3.466023e-49 | -8.615850e-47 |
| Msa0069210 | Msa0616160 | 0.808835 | 2.547104e-50 | -8.615850e-47 |
| Msa0069210 | Msa0767300 | 0.809551 | 1.789502e-50 | -8.615850e-47 |
| Msa0069210 | Msa0802010 | 0.802147 | 6.439554e-49 | -8.615850e-47 |
| Msa0069210 | Msa0938220 | 0.811608 | 6.430276e-51 | -8.615850e-47 |
| Msa0069210 | Msa1085200 | 0.817565 | 3.087694e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069210 | MtrunA17_Chr1g0199941 | 95.856 | 362 | 13 | 1 | 1 | 362 | 1 | 360 | 0.0 | 717 |
| Msa0069210 | MtrunA17_Chr8g0370491 | 91.436 | 362 | 29 | 1 | 1 | 362 | 1 | 360 | 0.0 | 689 |
| Msa0069210 | MtrunA17_Chr5g0429771 | 33.333 | 162 | 95 | 3 | 28 | 186 | 73 | 224 | 5.44e-21 | 92.0 |
| Msa0069210 | MtrunA17_Chr5g0429791 | 33.663 | 101 | 57 | 3 | 33 | 132 | 81 | 172 | 1.64e-12 | 65.5 |
| Msa0069210 | MtrunA17_Chr5g0429781 | 48.148 | 54 | 28 | 0 | 299 | 352 | 81 | 134 | 1.17e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069210 | AT2G17570.1 | 61.202 | 183 | 71 | 0 | 6 | 188 | 12 | 194 | 3.98e-78 | 242 |
| Msa0069210 | AT2G17570.1 | 56.637 | 113 | 36 | 1 | 263 | 362 | 183 | 295 | 3.20e-35 | 130 |
| Msa0069210 | AT5G60510.1 | 45.665 | 173 | 93 | 1 | 10 | 181 | 12 | 184 | 5.53e-51 | 171 |
| Msa0069210 | AT5G60510.1 | 55.682 | 88 | 38 | 1 | 274 | 360 | 183 | 270 | 3.15e-25 | 103 |
| Msa0069210 | AT5G60500.1 | 44.253 | 174 | 96 | 1 | 9 | 181 | 10 | 183 | 1.28e-49 | 168 |
| Msa0069210 | AT5G60500.1 | 52.273 | 88 | 41 | 1 | 274 | 360 | 182 | 269 | 1.18e-23 | 99.0 |
| Msa0069210 | AT5G58770.1 | 30.061 | 163 | 106 | 3 | 33 | 192 | 77 | 234 | 5.27e-19 | 87.0 |
| Msa0069210 | AT5G58770.1 | 36.458 | 96 | 52 | 2 | 261 | 352 | 212 | 302 | 1.70e-11 | 65.1 |
| Msa0069210 | AT5G58784.1 | 29.221 | 154 | 102 | 2 | 33 | 186 | 70 | 216 | 3.06e-18 | 84.7 |
| Msa0069210 | AT5G58784.1 | 57.143 | 49 | 17 | 1 | 299 | 343 | 242 | 290 | 6.92e-12 | 65.9 |
| Msa0069210 | AT2G23410.1 | 30.872 | 149 | 97 | 2 | 33 | 179 | 70 | 214 | 4.89e-18 | 84.0 |
| Msa0069210 | AT5G58780.1 | 30.464 | 151 | 94 | 2 | 33 | 179 | 70 | 213 | 8.63e-18 | 83.2 |
| Msa0069210 | AT5G58782.1 | 29.252 | 147 | 101 | 1 | 33 | 179 | 57 | 200 | 8.17e-17 | 80.1 |
| Msa0069210 | AT5G58782.2 | 29.252 | 147 | 101 | 1 | 33 | 179 | 75 | 218 | 1.22e-16 | 80.1 |
| Msa0069210 | AT2G23400.2 | 34.579 | 107 | 67 | 1 | 33 | 139 | 70 | 173 | 2.54e-16 | 77.0 |
| Msa0069210 | AT2G23400.1 | 34.579 | 107 | 67 | 1 | 33 | 139 | 70 | 173 | 1.43e-15 | 76.6 |
Find 73 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATGTTTGAACCTCTTT+AGG | 0.235814 | 1_2:+37459019 | None:intergenic |
| TTCGTTCCATTTATCCTTGC+AGG | 0.257938 | 1_2:+37458772 | None:intergenic |
| CCTTAGATACTGTTATGAAT+TGG | 0.282278 | 1_2:-37459095 | Msa0069210:CDS |
| TGAATTTACAAGAATTAATC+AGG | 0.296880 | 1_2:-37458708 | Msa0069210:CDS |
| AAGAATCCTGCAAGGATAAA+TGG | 0.299149 | 1_2:-37458778 | Msa0069210:CDS |
| GAAGTTCGGATCAAGATATC+TGG | 0.320042 | 1_2:+37458401 | None:intergenic |
| GATATCTTGATCCGAACTTC+TGG | 0.321850 | 1_2:-37458398 | Msa0069210:CDS |
| ATTTCAGGCCAAAGTACTTT+TGG | 0.326293 | 1_2:+37458317 | None:intergenic |
| AAAGTACTTTGGCCTGAAAT+TGG | 0.327946 | 1_2:-37458314 | Msa0069210:CDS |
| GGCGTTAGATTACATTTCAT+TGG | 0.328915 | 1_2:-37458935 | Msa0069210:CDS |
| CCAATTCATAACAGTATCTA+AGG | 0.352493 | 1_2:+37459095 | None:intergenic |
| CTTAGATACTGTTATGAATT+GGG | 0.374432 | 1_2:-37459094 | Msa0069210:CDS |
| GATTGAAGAGTTGCTTCAAC+AGG | 0.381328 | 1_2:-37458978 | Msa0069210:CDS |
| TATCGAGAAGCACATGTATA+TGG | 0.406062 | 1_2:-37458438 | Msa0069210:CDS |
| AAGTGTCTCAGACCAATTTC+AGG | 0.406669 | 1_2:+37458302 | None:intergenic |
| ATTGGAAACTTTATCTACCT+TGG | 0.416512 | 1_2:+37458739 | None:intergenic |
| AACTATTGACCGAACCTGTC+AGG | 0.416742 | 1_2:-37458904 | Msa0069210:CDS |
| AAGCAATATGATTCGGTAAA+GGG | 0.434641 | 1_2:+37459209 | None:intergenic |
| TGTAAATTCACGTTCACCAT+TGG | 0.438910 | 1_2:+37458721 | None:intergenic |
| CATATTGCTTTCATCATGGA+TGG | 0.445076 | 1_2:-37459196 | Msa0069210:CDS |
| TGCGGCAACCCTGACAGGTT+CGG | 0.448612 | 1_2:+37458895 | None:intergenic |
| ATGTAGAGTACTACAAGCTT+TGG | 0.449398 | 1_2:+37458628 | None:intergenic |
| TGTCAGGGTTGCCGCAGAAA+AGG | 0.465583 | 1_2:-37458888 | Msa0069210:CDS |
| TAAAGGGCCGGCTGATAAAA+CGG | 0.470361 | 1_2:+37459225 | None:intergenic |
| TGTATGCACCAAAAGTACTT+TGG | 0.470623 | 1_2:-37458325 | Msa0069210:CDS |
| AAATTAAAAGAACTCTCTCT+TGG | 0.473033 | 1_2:+37458843 | None:intergenic |
| GGGAGAAGGTGATGGTCATA+AGG | 0.475500 | 1_2:-37459143 | Msa0069210:CDS |
| TAAAGAGGTTCAAACATTCA+TGG | 0.476162 | 1_2:-37459017 | Msa0069210:CDS |
| AAAGCAATATGATTCGGTAA+AGG | 0.479272 | 1_2:+37459208 | None:intergenic |
| GAATCATATTGCTTTCATCA+TGG | 0.485927 | 1_2:-37459200 | Msa0069210:CDS |
| AGTATTACAAGCCACTTGCT+TGG | 0.487854 | 1_2:-37459283 | Msa0069210:CDS |
| GACGTGCCTCTCCAGAAGTT+CGG | 0.488831 | 1_2:+37458387 | None:intergenic |
| GAAACTTTATCTACCTTGGA+TGG | 0.495222 | 1_2:+37458743 | None:intergenic |
| AACATTCATGGAATTGATGC+GGG | 0.495749 | 1_2:-37459005 | Msa0069210:CDS |
| ATGATGAAAGCAATATGATT+CGG | 0.505722 | 1_2:+37459202 | None:intergenic |
| GAAAGCATTATTAATGAATA+CGG | 0.506500 | 1_2:-37458956 | Msa0069210:CDS |
| ATTACAAGCCACTTGCTTGG+AGG | 0.512105 | 1_2:-37459280 | Msa0069210:CDS |
| GAAGGTGATGGTCATAAGGC+TGG | 0.513463 | 1_2:-37459139 | Msa0069210:CDS |
| TTTCAGAAGGAAGCCTAAAG+AGG | 0.513566 | 1_2:-37459032 | Msa0069210:CDS |
| GTGAAATCACATCTTGCAAT+GGG | 0.514784 | 1_2:-37458526 | Msa0069210:CDS |
| CGGATCAAGATATCTGGGTC+AGG | 0.521553 | 1_2:+37458407 | None:intergenic |
| AATCAGGGCCCGAAAAGAAA+CGG | 0.557633 | 1_2:-37458692 | Msa0069210:CDS |
| ACTCTAATGCAGAAAAGTGC+GGG | 0.570315 | 1_2:-37459307 | None:intergenic |
| AGAAACATGGGAGAAGGTGA+TGG | 0.578866 | 1_2:-37459151 | Msa0069210:CDS |
| GAACGAAATTCAACCATCCA+AGG | 0.582528 | 1_2:-37458756 | Msa0069210:CDS |
| AAGTTCGGATCAAGATATCT+GGG | 0.585089 | 1_2:+37458402 | None:intergenic |
| CATAGCAATAATTACAGTGA+AGG | 0.585182 | 1_2:-37458548 | Msa0069210:CDS |
| ATGGGAATCGAAGGTATGCT+AGG | 0.585314 | 1_2:-37459177 | Msa0069210:CDS |
| ATATTGCTTTCATCATGGAT+GGG | 0.586307 | 1_2:-37459195 | Msa0069210:CDS |
| TGAAATTGGTCTGAGACACT+TGG | 0.588657 | 1_2:-37458300 | Msa0069210:CDS |
| GAAGCACATGTATATGGCAG+TGG | 0.589411 | 1_2:-37458432 | Msa0069210:CDS |
| AGGAGGAGAAACATGGGAGA+AGG | 0.592594 | 1_2:-37459157 | Msa0069210:CDS |
| AATATAAACCTCCAAGCAAG+TGG | 0.593519 | 1_2:+37459272 | None:intergenic |
| AACTCTCTCTTGGTTGTGTG+CGG | 0.593794 | 1_2:+37458853 | None:intergenic |
| AAACATTCATGGAATTGATG+CGG | 0.594151 | 1_2:-37459006 | Msa0069210:CDS |
| ACTATTGACCGAACCTGTCA+GGG | 0.598793 | 1_2:-37458903 | Msa0069210:CDS |
| GTATGCTAGGAGGAGAAACA+TGG | 0.611091 | 1_2:-37459164 | Msa0069210:CDS |
| AAGGTAGATAAAGTTTCCAA+TGG | 0.611134 | 1_2:-37458737 | Msa0069210:CDS |
| TCAGCATTGATAATTTCAGA+AGG | 0.613884 | 1_2:-37459045 | Msa0069210:CDS |
| AATATGATTCGGTAAAGGGC+CGG | 0.614611 | 1_2:+37459213 | None:intergenic |
| GGTGAAATCACATCTTGCAA+TGG | 0.614662 | 1_2:-37458527 | Msa0069210:CDS |
| CACTCTAATGCAGAAAAGTG+CGG | 0.616442 | 1_2:-37459308 | None:intergenic |
| TTCATAACAGTATCTAAGGA+CGG | 0.633266 | 1_2:+37459099 | None:intergenic |
| TCATCATGGATGGGAATCGA+AGG | 0.636036 | 1_2:-37459186 | Msa0069210:CDS |
| GAAGAGCGAAAGTACAAGCA+TGG | 0.637636 | 1_2:-37458488 | Msa0069210:CDS |
| AATCACATCTTGCAATGGGA+CGG | 0.641231 | 1_2:-37458522 | Msa0069210:CDS |
| TGCTGTTCAAGAATCCTGCA+AGG | 0.645018 | 1_2:-37458786 | Msa0069210:CDS |
| GAATTTACAAGAATTAATCA+GGG | 0.647383 | 1_2:-37458707 | Msa0069210:CDS |
| CTTGATCCGAACTTCTGGAG+AGG | 0.662499 | 1_2:-37458393 | Msa0069210:CDS |
| TGGTCTGAGACACTTGGTGT+GGG | 0.663899 | 1_2:-37458294 | Msa0069210:CDS |
| TTGGTCTGAGACACTTGGTG+TGG | 0.674555 | 1_2:-37458295 | Msa0069210:CDS |
| GGAATCGAAGGTATGCTAGG+AGG | 0.684483 | 1_2:-37459174 | Msa0069210:CDS |
| TATGCTAGGAGGAGAAACAT+GGG | 0.694842 | 1_2:-37459163 | Msa0069210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAGCATTATTAATGAATA+CGG | - | chr1_2:37458580-37458599 | Msa0069210:CDS | 20.0% |
| !! | TGAATTTACAAGAATTAATC+AGG | - | chr1_2:37458828-37458847 | Msa0069210:CDS | 20.0% |
| !! | GAATTTACAAGAATTAATCA+GGG | - | chr1_2:37458829-37458848 | Msa0069210:CDS | 20.0% |
| !!! | TTTTCTTTTCCAAGTAAAAA+TGG | + | chr1_2:37459290-37459309 | None:intergenic | 20.0% |
| !!! | GAAAGCATTATTAATGAATA+CGG | - | chr1_2:37458580-37458599 | Msa0069210:CDS | 20.0% |
| !! | TGAATTTACAAGAATTAATC+AGG | - | chr1_2:37458828-37458847 | Msa0069210:CDS | 20.0% |
| !! | GAATTTACAAGAATTAATCA+GGG | - | chr1_2:37458829-37458848 | Msa0069210:CDS | 20.0% |
| !!! | TTTTCTTTTCCAAGTAAAAA+TGG | + | chr1_2:37459290-37459309 | None:intergenic | 20.0% |
| ! | ATGATGAAAGCAATATGATT+CGG | + | chr1_2:37458337-37458356 | None:intergenic | 25.0% |
| ! | CTTAGATACTGTTATGAATT+GGG | - | chr1_2:37458442-37458461 | Msa0069210:CDS | 25.0% |
| ! | AAATTAAAAGAACTCTCTCT+TGG | + | chr1_2:37458696-37458715 | None:intergenic | 25.0% |
| ! | ATGATGAAAGCAATATGATT+CGG | + | chr1_2:37458337-37458356 | None:intergenic | 25.0% |
| ! | CTTAGATACTGTTATGAATT+GGG | - | chr1_2:37458442-37458461 | Msa0069210:CDS | 25.0% |
| ! | AAATTAAAAGAACTCTCTCT+TGG | + | chr1_2:37458696-37458715 | None:intergenic | 25.0% |
| !! | AAGCAATATGATTCGGTAAA+GGG | + | chr1_2:37458330-37458349 | None:intergenic | 30.0% |
| !! | AAAGCAATATGATTCGGTAA+AGG | + | chr1_2:37458331-37458350 | None:intergenic | 30.0% |
| GAATCATATTGCTTTCATCA+TGG | - | chr1_2:37458336-37458355 | Msa0069210:CDS | 30.0% | |
| ATATTGCTTTCATCATGGAT+GGG | - | chr1_2:37458341-37458360 | Msa0069210:CDS | 30.0% | |
| TTCATAACAGTATCTAAGGA+CGG | + | chr1_2:37458440-37458459 | None:intergenic | 30.0% | |
| CCAATTCATAACAGTATCTA+AGG | + | chr1_2:37458444-37458463 | None:intergenic | 30.0% | |
| CCTTAGATACTGTTATGAAT+TGG | - | chr1_2:37458441-37458460 | Msa0069210:CDS | 30.0% | |
| !! | TCAGCATTGATAATTTCAGA+AGG | - | chr1_2:37458491-37458510 | Msa0069210:CDS | 30.0% |
| ATGAATGTTTGAACCTCTTT+AGG | + | chr1_2:37458520-37458539 | None:intergenic | 30.0% | |
| TAAAGAGGTTCAAACATTCA+TGG | - | chr1_2:37458519-37458538 | Msa0069210:CDS | 30.0% | |
| AAACATTCATGGAATTGATG+CGG | - | chr1_2:37458530-37458549 | Msa0069210:CDS | 30.0% | |
| ATTGGAAACTTTATCTACCT+TGG | + | chr1_2:37458800-37458819 | None:intergenic | 30.0% | |
| AAGGTAGATAAAGTTTCCAA+TGG | - | chr1_2:37458799-37458818 | Msa0069210:CDS | 30.0% | |
| ! | AAATCAAGACCGTTTCTTTT+CGG | + | chr1_2:37458856-37458875 | None:intergenic | 30.0% |
| CATAGCAATAATTACAGTGA+AGG | - | chr1_2:37458988-37459007 | Msa0069210:CDS | 30.0% | |
| ! | GTCTCAGTAATTTTCTTCTT+TGG | - | chr1_2:37459169-37459188 | Msa0069210:CDS | 30.0% |
| !! | AAGCAATATGATTCGGTAAA+GGG | + | chr1_2:37458330-37458349 | None:intergenic | 30.0% |
| !! | AAAGCAATATGATTCGGTAA+AGG | + | chr1_2:37458331-37458350 | None:intergenic | 30.0% |
| GAATCATATTGCTTTCATCA+TGG | - | chr1_2:37458336-37458355 | Msa0069210:CDS | 30.0% | |
| ATATTGCTTTCATCATGGAT+GGG | - | chr1_2:37458341-37458360 | Msa0069210:CDS | 30.0% | |
| TTCATAACAGTATCTAAGGA+CGG | + | chr1_2:37458440-37458459 | None:intergenic | 30.0% | |
| CCAATTCATAACAGTATCTA+AGG | + | chr1_2:37458444-37458463 | None:intergenic | 30.0% | |
| CCTTAGATACTGTTATGAAT+TGG | - | chr1_2:37458441-37458460 | Msa0069210:CDS | 30.0% | |
| !! | TCAGCATTGATAATTTCAGA+AGG | - | chr1_2:37458491-37458510 | Msa0069210:CDS | 30.0% |
| ATGAATGTTTGAACCTCTTT+AGG | + | chr1_2:37458520-37458539 | None:intergenic | 30.0% | |
| TAAAGAGGTTCAAACATTCA+TGG | - | chr1_2:37458519-37458538 | Msa0069210:CDS | 30.0% | |
| AAACATTCATGGAATTGATG+CGG | - | chr1_2:37458530-37458549 | Msa0069210:CDS | 30.0% | |
| ATTGGAAACTTTATCTACCT+TGG | + | chr1_2:37458800-37458819 | None:intergenic | 30.0% | |
| AAGGTAGATAAAGTTTCCAA+TGG | - | chr1_2:37458799-37458818 | Msa0069210:CDS | 30.0% | |
| ! | AAATCAAGACCGTTTCTTTT+CGG | + | chr1_2:37458856-37458875 | None:intergenic | 30.0% |
| CATAGCAATAATTACAGTGA+AGG | - | chr1_2:37458988-37459007 | Msa0069210:CDS | 30.0% | |
| ! | GTCTCAGTAATTTTCTTCTT+TGG | - | chr1_2:37459169-37459188 | Msa0069210:CDS | 30.0% |
| AATATAAACCTCCAAGCAAG+TGG | + | chr1_2:37458267-37458286 | None:intergenic | 35.0% | |
| !!! | ATATTTGCCGTTTTATCAGC+CGG | - | chr1_2:37458304-37458323 | Msa0069210:CDS | 35.0% |
| CATATTGCTTTCATCATGGA+TGG | - | chr1_2:37458340-37458359 | Msa0069210:CDS | 35.0% | |
| AACATTCATGGAATTGATGC+GGG | - | chr1_2:37458531-37458550 | Msa0069210:CDS | 35.0% | |
| GGCGTTAGATTACATTTCAT+TGG | - | chr1_2:37458601-37458620 | Msa0069210:CDS | 35.0% | |
| AAGAATCCTGCAAGGATAAA+TGG | - | chr1_2:37458758-37458777 | Msa0069210:CDS | 35.0% | |
| GAAACTTTATCTACCTTGGA+TGG | + | chr1_2:37458796-37458815 | None:intergenic | 35.0% | |
| TGTAAATTCACGTTCACCAT+TGG | + | chr1_2:37458818-37458837 | None:intergenic | 35.0% | |
| ! | AATCAAGACCGTTTCTTTTC+GGG | + | chr1_2:37458855-37458874 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACTACAAGCTT+TGG | + | chr1_2:37458911-37458930 | None:intergenic | 35.0% |
| GTGAAATCACATCTTGCAAT+GGG | - | chr1_2:37459010-37459029 | Msa0069210:CDS | 35.0% | |
| ! | TATCGAGAAGCACATGTATA+TGG | - | chr1_2:37459098-37459117 | Msa0069210:CDS | 35.0% |
| AAGTTCGGATCAAGATATCT+GGG | + | chr1_2:37459137-37459156 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTGCATACAAA+GGG | + | chr1_2:37459209-37459228 | None:intergenic | 35.0% |
| !! | AGTACTTTTGGTGCATACAA+AGG | + | chr1_2:37459210-37459229 | None:intergenic | 35.0% |
| !! | TGTATGCACCAAAAGTACTT+TGG | - | chr1_2:37459211-37459230 | Msa0069210:CDS | 35.0% |
| !! | ATTTCAGGCCAAAGTACTTT+TGG | + | chr1_2:37459222-37459241 | None:intergenic | 35.0% |
| ! | AAAGTACTTTGGCCTGAAAT+TGG | - | chr1_2:37459222-37459241 | Msa0069210:CDS | 35.0% |
| !! | TCAGAGACACCATTTTTACT+TGG | - | chr1_2:37459278-37459297 | Msa0069210:CDS | 35.0% |
| AATATAAACCTCCAAGCAAG+TGG | + | chr1_2:37458267-37458286 | None:intergenic | 35.0% | |
| !!! | ATATTTGCCGTTTTATCAGC+CGG | - | chr1_2:37458304-37458323 | Msa0069210:CDS | 35.0% |
| CATATTGCTTTCATCATGGA+TGG | - | chr1_2:37458340-37458359 | Msa0069210:CDS | 35.0% | |
| AACATTCATGGAATTGATGC+GGG | - | chr1_2:37458531-37458550 | Msa0069210:CDS | 35.0% | |
| GGCGTTAGATTACATTTCAT+TGG | - | chr1_2:37458601-37458620 | Msa0069210:CDS | 35.0% | |
| AAGAATCCTGCAAGGATAAA+TGG | - | chr1_2:37458758-37458777 | Msa0069210:CDS | 35.0% | |
| GAAACTTTATCTACCTTGGA+TGG | + | chr1_2:37458796-37458815 | None:intergenic | 35.0% | |
| TGTAAATTCACGTTCACCAT+TGG | + | chr1_2:37458818-37458837 | None:intergenic | 35.0% | |
| ! | AATCAAGACCGTTTCTTTTC+GGG | + | chr1_2:37458855-37458874 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACTACAAGCTT+TGG | + | chr1_2:37458911-37458930 | None:intergenic | 35.0% |
| GTGAAATCACATCTTGCAAT+GGG | - | chr1_2:37459010-37459029 | Msa0069210:CDS | 35.0% | |
| ! | TATCGAGAAGCACATGTATA+TGG | - | chr1_2:37459098-37459117 | Msa0069210:CDS | 35.0% |
| AAGTTCGGATCAAGATATCT+GGG | + | chr1_2:37459137-37459156 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTGCATACAAA+GGG | + | chr1_2:37459209-37459228 | None:intergenic | 35.0% |
| !! | AGTACTTTTGGTGCATACAA+AGG | + | chr1_2:37459210-37459229 | None:intergenic | 35.0% |
| !! | TGTATGCACCAAAAGTACTT+TGG | - | chr1_2:37459211-37459230 | Msa0069210:CDS | 35.0% |
| !! | ATTTCAGGCCAAAGTACTTT+TGG | + | chr1_2:37459222-37459241 | None:intergenic | 35.0% |
| ! | AAAGTACTTTGGCCTGAAAT+TGG | - | chr1_2:37459222-37459241 | Msa0069210:CDS | 35.0% |
| !! | TCAGAGACACCATTTTTACT+TGG | - | chr1_2:37459278-37459297 | Msa0069210:CDS | 35.0% |
| AGTATTACAAGCCACTTGCT+TGG | - | chr1_2:37458253-37458272 | Msa0069210:CDS | 40.0% | |
| !! | AATATGATTCGGTAAAGGGC+CGG | + | chr1_2:37458326-37458345 | None:intergenic | 40.0% |
| TATGCTAGGAGGAGAAACAT+GGG | - | chr1_2:37458373-37458392 | Msa0069210:CDS | 40.0% | |
| TTTCAGAAGGAAGCCTAAAG+AGG | - | chr1_2:37458504-37458523 | Msa0069210:CDS | 40.0% | |
| GATTGAAGAGTTGCTTCAAC+AGG | - | chr1_2:37458558-37458577 | Msa0069210:CDS | 40.0% | |
| ! | AACTCTCATTGCCTTTTCTG+CGG | + | chr1_2:37458662-37458681 | None:intergenic | 40.0% |
| TTCGTTCCATTTATCCTTGC+AGG | + | chr1_2:37458767-37458786 | None:intergenic | 40.0% | |
| GAACGAAATTCAACCATCCA+AGG | - | chr1_2:37458780-37458799 | Msa0069210:CDS | 40.0% | |
| GGTGAAATCACATCTTGCAA+TGG | - | chr1_2:37459009-37459028 | Msa0069210:CDS | 40.0% | |
| AATCACATCTTGCAATGGGA+CGG | - | chr1_2:37459014-37459033 | Msa0069210:CDS | 40.0% | |
| GAAGTTCGGATCAAGATATC+TGG | + | chr1_2:37459138-37459157 | None:intergenic | 40.0% | |
| GATATCTTGATCCGAACTTC+TGG | - | chr1_2:37459138-37459157 | Msa0069210:CDS | 40.0% | |
| AAGTGTCTCAGACCAATTTC+AGG | + | chr1_2:37459237-37459256 | None:intergenic | 40.0% | |
| ! | TGAAATTGGTCTGAGACACT+TGG | - | chr1_2:37459236-37459255 | Msa0069210:CDS | 40.0% |
| AGTATTACAAGCCACTTGCT+TGG | - | chr1_2:37458253-37458272 | Msa0069210:CDS | 40.0% | |
| !! | AATATGATTCGGTAAAGGGC+CGG | + | chr1_2:37458326-37458345 | None:intergenic | 40.0% |
| TATGCTAGGAGGAGAAACAT+GGG | - | chr1_2:37458373-37458392 | Msa0069210:CDS | 40.0% | |
| TTTCAGAAGGAAGCCTAAAG+AGG | - | chr1_2:37458504-37458523 | Msa0069210:CDS | 40.0% | |
| GATTGAAGAGTTGCTTCAAC+AGG | - | chr1_2:37458558-37458577 | Msa0069210:CDS | 40.0% | |
| ! | AACTCTCATTGCCTTTTCTG+CGG | + | chr1_2:37458662-37458681 | None:intergenic | 40.0% |
| TTCGTTCCATTTATCCTTGC+AGG | + | chr1_2:37458767-37458786 | None:intergenic | 40.0% | |
| GAACGAAATTCAACCATCCA+AGG | - | chr1_2:37458780-37458799 | Msa0069210:CDS | 40.0% | |
| GGTGAAATCACATCTTGCAA+TGG | - | chr1_2:37459009-37459028 | Msa0069210:CDS | 40.0% | |
| AATCACATCTTGCAATGGGA+CGG | - | chr1_2:37459014-37459033 | Msa0069210:CDS | 40.0% | |
| GAAGTTCGGATCAAGATATC+TGG | + | chr1_2:37459138-37459157 | None:intergenic | 40.0% | |
| GATATCTTGATCCGAACTTC+TGG | - | chr1_2:37459138-37459157 | Msa0069210:CDS | 40.0% | |
| AAGTGTCTCAGACCAATTTC+AGG | + | chr1_2:37459237-37459256 | None:intergenic | 40.0% | |
| ! | TGAAATTGGTCTGAGACACT+TGG | - | chr1_2:37459236-37459255 | Msa0069210:CDS | 40.0% |
| ATTACAAGCCACTTGCTTGG+AGG | - | chr1_2:37458256-37458275 | Msa0069210:CDS | 45.0% | |
| TAAAGGGCCGGCTGATAAAA+CGG | + | chr1_2:37458314-37458333 | None:intergenic | 45.0% | |
| TCATCATGGATGGGAATCGA+AGG | - | chr1_2:37458350-37458369 | Msa0069210:CDS | 45.0% | |
| ! | ATGGGAATCGAAGGTATGCT+AGG | - | chr1_2:37458359-37458378 | Msa0069210:CDS | 45.0% |
| GTATGCTAGGAGGAGAAACA+TGG | - | chr1_2:37458372-37458391 | Msa0069210:CDS | 45.0% | |
| AGAAACATGGGAGAAGGTGA+TGG | - | chr1_2:37458385-37458404 | Msa0069210:CDS | 45.0% | |
| AACTATTGACCGAACCTGTC+AGG | - | chr1_2:37458632-37458651 | Msa0069210:CDS | 45.0% | |
| ACTATTGACCGAACCTGTCA+GGG | - | chr1_2:37458633-37458652 | Msa0069210:CDS | 45.0% | |
| AACTCTCTCTTGGTTGTGTG+CGG | + | chr1_2:37458686-37458705 | None:intergenic | 45.0% | |
| TGCTGTTCAAGAATCCTGCA+AGG | - | chr1_2:37458750-37458769 | Msa0069210:CDS | 45.0% | |
| AATCAGGGCCCGAAAAGAAA+CGG | - | chr1_2:37458844-37458863 | Msa0069210:CDS | 45.0% | |
| ! | GAAGAGCGAAAGTACAAGCA+TGG | - | chr1_2:37459048-37459067 | Msa0069210:CDS | 45.0% |
| GAAGCACATGTATATGGCAG+TGG | - | chr1_2:37459104-37459123 | Msa0069210:CDS | 45.0% | |
| ATTACAAGCCACTTGCTTGG+AGG | - | chr1_2:37458256-37458275 | Msa0069210:CDS | 45.0% | |
| TAAAGGGCCGGCTGATAAAA+CGG | + | chr1_2:37458314-37458333 | None:intergenic | 45.0% | |
| TCATCATGGATGGGAATCGA+AGG | - | chr1_2:37458350-37458369 | Msa0069210:CDS | 45.0% | |
| ! | ATGGGAATCGAAGGTATGCT+AGG | - | chr1_2:37458359-37458378 | Msa0069210:CDS | 45.0% |
| GTATGCTAGGAGGAGAAACA+TGG | - | chr1_2:37458372-37458391 | Msa0069210:CDS | 45.0% | |
| AGAAACATGGGAGAAGGTGA+TGG | - | chr1_2:37458385-37458404 | Msa0069210:CDS | 45.0% | |
| AACTATTGACCGAACCTGTC+AGG | - | chr1_2:37458632-37458651 | Msa0069210:CDS | 45.0% | |
| ACTATTGACCGAACCTGTCA+GGG | - | chr1_2:37458633-37458652 | Msa0069210:CDS | 45.0% | |
| AACTCTCTCTTGGTTGTGTG+CGG | + | chr1_2:37458686-37458705 | None:intergenic | 45.0% | |
| TGCTGTTCAAGAATCCTGCA+AGG | - | chr1_2:37458750-37458769 | Msa0069210:CDS | 45.0% | |
| AATCAGGGCCCGAAAAGAAA+CGG | - | chr1_2:37458844-37458863 | Msa0069210:CDS | 45.0% | |
| ! | GAAGAGCGAAAGTACAAGCA+TGG | - | chr1_2:37459048-37459067 | Msa0069210:CDS | 45.0% |
| GAAGCACATGTATATGGCAG+TGG | - | chr1_2:37459104-37459123 | Msa0069210:CDS | 45.0% | |
| ! | GGAATCGAAGGTATGCTAGG+AGG | - | chr1_2:37458362-37458381 | Msa0069210:CDS | 50.0% |
| AGGAGGAGAAACATGGGAGA+AGG | - | chr1_2:37458379-37458398 | Msa0069210:CDS | 50.0% | |
| ! | GGGAGAAGGTGATGGTCATA+AGG | - | chr1_2:37458393-37458412 | Msa0069210:CDS | 50.0% |
| ! | GAAGGTGATGGTCATAAGGC+TGG | - | chr1_2:37458397-37458416 | Msa0069210:CDS | 50.0% |
| CGGATCAAGATATCTGGGTC+AGG | + | chr1_2:37459132-37459151 | None:intergenic | 50.0% | |
| ! | CTTGATCCGAACTTCTGGAG+AGG | - | chr1_2:37459143-37459162 | Msa0069210:CDS | 50.0% |
| ! | TTGGTCTGAGACACTTGGTG+TGG | - | chr1_2:37459241-37459260 | Msa0069210:CDS | 50.0% |
| !! | TGGTCTGAGACACTTGGTGT+GGG | - | chr1_2:37459242-37459261 | Msa0069210:CDS | 50.0% |
| ! | GGAATCGAAGGTATGCTAGG+AGG | - | chr1_2:37458362-37458381 | Msa0069210:CDS | 50.0% |
| AGGAGGAGAAACATGGGAGA+AGG | - | chr1_2:37458379-37458398 | Msa0069210:CDS | 50.0% | |
| ! | GGGAGAAGGTGATGGTCATA+AGG | - | chr1_2:37458393-37458412 | Msa0069210:CDS | 50.0% |
| ! | GAAGGTGATGGTCATAAGGC+TGG | - | chr1_2:37458397-37458416 | Msa0069210:CDS | 50.0% |
| CGGATCAAGATATCTGGGTC+AGG | + | chr1_2:37459132-37459151 | None:intergenic | 50.0% | |
| ! | CTTGATCCGAACTTCTGGAG+AGG | - | chr1_2:37459143-37459162 | Msa0069210:CDS | 50.0% |
| ! | TTGGTCTGAGACACTTGGTG+TGG | - | chr1_2:37459241-37459260 | Msa0069210:CDS | 50.0% |
| !! | TGGTCTGAGACACTTGGTGT+GGG | - | chr1_2:37459242-37459261 | Msa0069210:CDS | 50.0% |
| ! | TTTTCTGCGGCAACCCTGAC+AGG | + | chr1_2:37458649-37458668 | None:intergenic | 55.0% |
| TGTCAGGGTTGCCGCAGAAA+AGG | - | chr1_2:37458648-37458667 | Msa0069210:CDS | 55.0% | |
| GACGTGCCTCTCCAGAAGTT+CGG | + | chr1_2:37459152-37459171 | None:intergenic | 55.0% | |
| ! | TTTTCTGCGGCAACCCTGAC+AGG | + | chr1_2:37458649-37458668 | None:intergenic | 55.0% |
| TGTCAGGGTTGCCGCAGAAA+AGG | - | chr1_2:37458648-37458667 | Msa0069210:CDS | 55.0% | |
| GACGTGCCTCTCCAGAAGTT+CGG | + | chr1_2:37459152-37459171 | None:intergenic | 55.0% | |
| TGCGGCAACCCTGACAGGTT+CGG | + | chr1_2:37458644-37458663 | None:intergenic | 60.0% | |
| TGCGGCAACCCTGACAGGTT+CGG | + | chr1_2:37458644-37458663 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 37458235 | 37459323 | 37458235 | ID=Msa0069210;Name=Msa0069210 |
| chr1_2 | mRNA | 37458235 | 37459323 | 37458235 | ID=Msa0069210-mRNA-1;Parent=Msa0069210;Name=Msa0069210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|362 |
| chr1_2 | exon | 37458235 | 37459323 | 37458235 | ID=Msa0069210-mRNA-1:exon:11790;Parent=Msa0069210-mRNA-1 |
| chr1_2 | CDS | 37458235 | 37459323 | 37458235 | ID=Msa0069210-mRNA-1:cds;Parent=Msa0069210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
