AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132450 MtrunA17_Chr1g0201711 99.323 443 3 0 1 443 1 443 0.0 913
Msa0132450 MtrunA17_Chr6g0464571 78.104 443 91 1 1 443 1 437 0.0 730
Msa0132450 MtrunA17_Chr6g0464521 84.416 231 36 0 1 231 1 231 2.07e-144 412
Msa0132450 MtrunA17_Chr6g0464531 84.038 213 34 0 231 443 1 213 4.15e-127 366
Msa0132450 MtrunA17_Chr6g0464551 64.015 264 77 5 128 391 16 261 9.42e-111 328
Msa0132450 MtrunA17_Chr7g0217671 32.277 347 182 11 4 333 17 327 3.24e-44 161
Msa0132450 MtrunA17_Chr7g0217671 32.258 217 107 6 21 197 129 345 6.20e-20 92.0
Msa0132450 MtrunA17_Chr3g0126461 31.322 348 186 12 4 334 16 327 4.76e-40 150
Msa0132450 MtrunA17_Chr3g0126461 32.143 224 98 6 21 197 128 344 8.66e-24 103
Msa0132450 MtrunA17_Chr1g0158921 29.650 371 185 12 4 334 16 350 8.21e-33 129
Msa0132450 MtrunA17_Chr1g0158921 32.547 212 104 5 25 197 156 367 2.78e-23 101
Msa0132450 MtrunA17_Chr6g0453381 40.179 112 61 4 54 162 10 118 2.75e-19 83.6
Msa0132450 MtrunA17_Chr6g0453371 33.793 145 80 5 92 223 23 164 2.20e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132450 AT1G43190.2 82.658 444 64 2 1 443 1 432 0.0 751
Msa0132450 AT1G43190.1 82.658 444 64 2 1 443 1 432 0.0 751
Msa0132450 AT1G43190.3 82.207 444 64 3 1 443 1 430 0.0 742
Msa0132450 AT3G01150.1 31.319 364 196 12 4 348 15 343 1.28e-44 160
Msa0132450 AT3G01150.1 30.741 270 131 9 15 243 122 376 7.81e-22 97.4
Msa0132450 AT3G01150.3 32.424 330 175 10 4 320 15 309 7.47e-44 156
Msa0132450 AT3G01150.3 30.159 189 94 4 15 165 122 310 1.58e-14 74.7
Msa0132450 AT5G53180.1 31.034 348 187 12 4 334 16 327 5.03e-40 149
Msa0132450 AT5G53180.1 33.962 212 100 7 21 192 128 339 1.10e-24 105
Msa0132450 AT5G53180.6 33.493 209 100 6 23 192 1 209 3.94e-26 107
Msa0132450 AT5G53180.2 33.173 208 100 6 24 192 32 239 5.40e-25 105
Msa0132450 AT5G53180.4 33.173 208 100 6 24 192 33 240 5.88e-25 105
Msa0132450 AT5G53180.3 33.173 208 100 6 24 192 18 225 5.92e-25 105
Msa0132450 AT5G53180.5 46.154 104 54 2 91 192 126 229 4.10e-22 97.1
Msa0132450 AT3G01150.2 29.032 248 130 7 115 348 3 218 8.98e-22 95.1
Msa0132450 AT3G01150.2 31.034 261 124 9 24 243 6 251 2.22e-21 94.0
Msa0132450 AT3G01150.4 30.374 214 109 5 115 320 3 184 6.31e-21 90.5
Msa0132450 AT3G01150.4 30.556 180 87 4 24 165 6 185 2.25e-14 72.0

Find 135 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTGTTCTCCCTTTA+TGG 0.035664 1_3:-63516267 Msa0132450:CDS
GCGGCCATTGCAGCTGCTTT+TGG 0.074456 1_3:-63516460 Msa0132450:CDS
TTTAAATCATTGTTGTATTT+TGG 0.136382 1_3:-63514720 Msa0132450:three_prime_UTR
TACGAACTTTGTAGGCTTTC+AGG 0.175411 1_3:-63517801 Msa0132450:intron
TTCTGTTCTGTAGGGAGATT+TGG 0.179215 1_3:+63517274 None:intergenic
AGAGACAAGGATTCTGAATT+TGG 0.219094 1_3:-63515004 Msa0132450:three_prime_UTR
ATACAACATAATGGCATATT+TGG 0.228189 1_3:+63514697 None:intergenic
CTTCAGTTATTTCAACCTTT+TGG 0.234793 1_3:-63519489 Msa0132450:CDS
CGCTTTCTGGCTCGGTAATT+CGG 0.274128 1_3:-63515113 Msa0132450:CDS
AGCTGCAATGGCCGCAGCAT+TGG 0.284533 1_3:+63516468 None:intergenic
TTCTCACAATGTTTCCATAA+AGG 0.300059 1_3:+63516253 None:intergenic
TCTCACAATGTTTCCATAAA+GGG 0.309290 1_3:+63516254 None:intergenic
GCTGCAATGGCCGCAGCATT+GGG 0.311225 1_3:+63516469 None:intergenic
GGTTTACCTCCTGGAATAAC+TGG 0.311464 1_3:-63516433 Msa0132450:CDS
AAGCATGCTACCTCGCTTTC+TGG 0.321751 1_3:-63515126 Msa0132450:CDS
TGGTTCCATGCTCCTCTAGA+AGG 0.326729 1_3:+63515241 None:intergenic
CCTTAGATTCAGTCTTCAAT+TGG 0.336895 1_3:-63520798 Msa0132450:five_prime_UTR
CCAATTGAAGACTGAATCTA+AGG 0.339157 1_3:+63520798 None:intergenic
TACTGCAAGAACTGCACTTC+AGG 0.342948 1_3:-63517744 Msa0132450:intron
CAGAAGGAACGTCTTGCATT+TGG 0.346584 1_3:+63519293 None:intergenic
TCTGTTCTGTAGGGAGATTT+GGG 0.347660 1_3:+63517275 None:intergenic
ATTGGTGAAAGTTGAGTCTT+AGG 0.365812 1_3:-63514793 Msa0132450:three_prime_UTR
AACTCTGTTGTGATTGATAC+TGG 0.373607 1_3:+63517771 None:intergenic
TCAGCACCTTGTGTTATGTT+TGG 0.381551 1_3:+63515402 None:intergenic
AGGAAGCATGTATGGTGTTC+AGG 0.389056 1_3:-63517070 Msa0132450:CDS
ATACAGTACATCCACTGTTA+TGG 0.393709 1_3:+63518664 None:intergenic
ATGTATGGTGTTCAGGGTTC+TGG 0.394858 1_3:-63517063 Msa0132450:CDS
AGCAAAGTATTTGAGATGAA+TGG 0.395330 1_3:-63515210 Msa0132450:CDS
GCTCTTGATGAGATGAAAAC+TGG 0.405496 1_3:+63519061 None:intergenic
AAGAGTACCTTATGCTTGGC+TGG 0.410645 1_3:+63519239 None:intergenic
TCATTTGTCCCAGTTATTCC+AGG 0.410874 1_3:+63516424 None:intergenic
CATCTTCAGTGATGTCTTGT+GGG 0.410989 1_3:+63515274 None:intergenic
GAATTGTAACTAAGAGAATT+CGG 0.415308 1_3:+63518702 None:intergenic
CTTGGAAACCATCTCCCATC+TGG 0.416528 1_3:+63516193 None:intergenic
TCTTCTTCATTATCTTGTAA+TGG 0.422111 1_3:-63514951 Msa0132450:three_prime_UTR
GTTTACAGATTAATTTATCA+TGG 0.422123 1_3:-63520389 Msa0132450:intron
GAATAACTGGGACAAATGAT+AGG 0.422703 1_3:-63516420 Msa0132450:CDS
GCAAAGTATTTGAGATGAAT+GGG 0.425279 1_3:-63515209 Msa0132450:CDS
GAAGATGAGAAAAGAAATGA+TGG 0.429477 1_3:+63514876 None:intergenic
ACGGGTTCTTAACATTGTTA+AGG 0.432457 1_3:+63515059 None:intergenic
GTCATTCATGTTCGAAATGT+GGG 0.433953 1_3:-63520352 Msa0132450:CDS
CTTAGATTCAGTCTTCAATT+GGG 0.436259 1_3:-63520797 Msa0132450:five_prime_UTR
ACAAATGAATCATCTTCGTT+GGG 0.440370 1_3:+63515304 None:intergenic
CAGGGTTCTGGACCCAGGGC+AGG 0.442597 1_3:-63517051 Msa0132450:intron
TGCTACCTCGCTTTCTGGCT+CGG 0.444036 1_3:-63515121 Msa0132450:CDS
ATTATAATAATGACCGTTCA+AGG 0.444162 1_3:-63517395 Msa0132450:intron
AGATGGTTTCCAAGCTGAAC+TGG 0.446354 1_3:-63516184 Msa0132450:CDS
AGGTAGCATGCTTGCATACA+AGG 0.447408 1_3:+63515136 None:intergenic
TCAGTTTGAGACTGAGGATC+AGG 0.451143 1_3:-63515169 Msa0132450:CDS
GTGTTCAGGGTTCTGGACCC+AGG 0.453204 1_3:-63517056 Msa0132450:CDS
GGATTGAGAATACAACATAA+TGG 0.463057 1_3:+63514688 None:intergenic
TTATGATGGTTGCTGTCAGC+TGG 0.464841 1_3:-63517617 Msa0132450:CDS
CCGTTACTTCGGTTGTCCAC+GGG 0.466121 1_3:+63515041 None:intergenic
GGCCTGCCTTTCTGTTCTGT+AGG 0.467800 1_3:+63517265 None:intergenic
CGAACATGAATGACCTTGGA+AGG 0.468919 1_3:+63520361 None:intergenic
TATATTCTGCAATTGAGAAT+AGG 0.470609 1_3:+63515086 None:intergenic
GACAAATGAATCATCTTCGT+TGG 0.470970 1_3:+63515303 None:intergenic
TACAGTACATCCACTGTTAT+GGG 0.471701 1_3:+63518665 None:intergenic
TAGGGTCGCAATATTTATGA+TGG 0.475560 1_3:-63517631 Msa0132450:CDS
CAGCTTGGATATGGTGATGC+AGG 0.477074 1_3:-63517090 Msa0132450:CDS
ACCGTTACTTCGGTTGTCCA+CGG 0.477723 1_3:+63515040 None:intergenic
AATTCACTTGTAATTCATCA+AGG 0.483108 1_3:+63517415 None:intergenic
TCTGTGAAACAGCTTGGATA+TGG 0.488413 1_3:-63517099 Msa0132450:intron
GTAACTAAGAGAATTCGGTT+TGG 0.488756 1_3:+63518707 None:intergenic
GTTAAATTTAGCACCTGCCC+TGG 0.490169 1_3:+63517038 None:intergenic
TCTTCATTATCTTGTAATGG+TGG 0.490760 1_3:-63514948 Msa0132450:three_prime_UTR
TACTAACATAATGTAGAGTA+GGG 0.492586 1_3:-63514830 Msa0132450:three_prime_UTR
TTACTAACATAATGTAGAGT+AGG 0.492786 1_3:-63514831 Msa0132450:three_prime_UTR
GCCTGCCTTTCTGTTCTGTA+GGG 0.494453 1_3:+63517266 None:intergenic
GTTGAGTCTTAGGAATAGAA+AGG 0.494469 1_3:-63514783 Msa0132450:three_prime_UTR
AAATAAAGGTGGTGAAAAGA+AGG 0.495349 1_3:+63514746 None:intergenic
ATCTGGATAAGTGCATGATC+TGG 0.502751 1_3:+63516210 None:intergenic
AGTCTTAGGAATAGAAAGGA+GGG 0.504282 1_3:-63514779 Msa0132450:three_prime_UTR
GAGTCTTAGGAATAGAAAGG+AGG 0.506714 1_3:-63514780 Msa0132450:three_prime_UTR
GGAAGCATGTATGGTGTTCA+GGG 0.508233 1_3:-63517069 Msa0132450:CDS
AGCTTTGTGATGACTCCAAA+AGG 0.509921 1_3:+63519474 None:intergenic
AGCTAAGAGTACCTTATGCT+TGG 0.512139 1_3:+63519235 None:intergenic
GTGACATTTCAGAAGTCAGC+TGG 0.518294 1_3:-63518605 Msa0132450:intron
CCTCAGTCTCAAACTGAACC+AGG 0.518672 1_3:+63515175 None:intergenic
GGTGATGCAGGAAGCATGTA+TGG 0.523701 1_3:-63517078 Msa0132450:CDS
TCATCTTCAGTGATGTCTTG+TGG 0.524428 1_3:+63515273 None:intergenic
ACAAGGATTCTGAATTTGGA+AGG 0.525674 1_3:-63515000 Msa0132450:three_prime_UTR
GCACTTATCCAGATGGGAGA+TGG 0.531925 1_3:-63516201 Msa0132450:CDS
TATCATGGCTGAACCTTCCA+AGG 0.532831 1_3:-63520374 Msa0132450:exon
CCCGTGGACAACCGAAGTAA+CGG 0.532904 1_3:-63515041 Msa0132450:three_prime_UTR
AGAGTACCTTATGCTTGGCT+GGG 0.540483 1_3:+63519240 None:intergenic
ATTTCGAACATGAATGACCT+TGG 0.541812 1_3:+63520357 None:intergenic
TAGCAGCGTTACGATTAAAA+CGG 0.543089 1_3:+63515349 None:intergenic
GAAACACCCAGCCAAGCATA+AGG 0.545572 1_3:-63519246 Msa0132450:intron
TGTTCAGGGTTCTGGACCCA+GGG 0.546711 1_3:-63517055 Msa0132450:CDS
TCCCTACAGAACAGAAAGGC+AGG 0.547542 1_3:-63517267 Msa0132450:CDS
AAATACTTTGCTATTGACAA+TGG 0.551736 1_3:+63515221 None:intergenic
GGTCATTCATGTTCGAAATG+TGG 0.557701 1_3:-63520353 Msa0132450:CDS
TTAAATTTAGCACCTGCCCT+GGG 0.559061 1_3:+63517039 None:intergenic
GAGCATAACAACCGTTACTT+CGG 0.568668 1_3:+63515030 None:intergenic
AGTGTACAGCCAGTTCAGCT+TGG 0.569092 1_3:+63516175 None:intergenic
AAGATGAGAAAAGAAATGAT+GGG 0.570192 1_3:+63514877 None:intergenic
AGTGATGTCTTGTGGGAGTG+TGG 0.570311 1_3:+63515281 None:intergenic
TGTAAAGCACTAACTGCAGA+AGG 0.572096 1_3:+63519277 None:intergenic
AGATCATGCACTTATCCAGA+TGG 0.574543 1_3:-63516208 Msa0132450:CDS
CCTTTCAGTCGGATATCCAC+AGG 0.574783 1_3:-63516940 Msa0132450:intron
GAATGGGAAGAAACAAGGCC+TGG 0.576914 1_3:-63515193 Msa0132450:CDS
GGTTCCATGCTCCTCTAGAA+GGG 0.591822 1_3:+63515242 None:intergenic
GAGATGAATGGGAAGAAACA+AGG 0.597286 1_3:-63515198 Msa0132450:CDS
CCTGGTTCAGTTTGAGACTG+AGG 0.597497 1_3:-63515175 Msa0132450:CDS
GATCATGCACTTATCCAGAT+GGG 0.599793 1_3:-63516207 Msa0132450:CDS
AGAGACTGAATCACCTTGAA+CGG 0.607191 1_3:+63517382 None:intergenic
AATTACCGAGCCAGAAAGCG+AGG 0.607510 1_3:+63515116 None:intergenic
ACTGGCTGTACACTTTCTGA+AGG 0.611721 1_3:-63516166 Msa0132450:intron
TGAGATTGTGACCCTTCTAG+AGG 0.616426 1_3:-63515253 Msa0132450:CDS
AAGTCAAGGACGAGGAGATG+AGG 0.618331 1_3:-63519022 Msa0132450:intron
GTCTTAGGAATAGAAAGGAG+GGG 0.621041 1_3:-63514778 Msa0132450:three_prime_UTR
GTGACCCTTCTAGAGGAGCA+TGG 0.626740 1_3:-63515246 Msa0132450:CDS
AATCTCCCTACAGAACAGAA+AGG 0.630603 1_3:-63517271 Msa0132450:CDS
AGATGAGAAAAGAAATGATG+GGG 0.635644 1_3:+63514878 None:intergenic
GTTTACCTCCTGGAATAACT+GGG 0.639926 1_3:-63516432 Msa0132450:CDS
GTTGTTTGATAAGCGACTAG+AGG 0.641453 1_3:-63515442 Msa0132450:CDS
ACAACAATAGATCAAAGTCA+AGG 0.643404 1_3:-63519036 Msa0132450:CDS
ATTGAAGACTGAATCTAAGG+AGG 0.644719 1_3:+63520801 None:intergenic
GGTAGCATGCTTGCATACAA+GGG 0.647100 1_3:+63515137 None:intergenic
TGTTATGCTCAGTAGAGACA+AGG 0.655812 1_3:-63515017 Msa0132450:three_prime_UTR
CAAACGAAACATACTTGTGG+AGG 0.658477 1_3:+63517244 None:intergenic
TTTGTCCCAGTTATTCCAGG+AGG 0.658977 1_3:+63516427 None:intergenic
CAAATGAATCATCTTCGTTG+GGG 0.661543 1_3:+63515305 None:intergenic
TCGTTGGGGAGCAGCAATAG+CGG 0.661679 1_3:+63515319 None:intergenic
TCATTCATGTTCGAAATGTG+GGG 0.666929 1_3:-63520351 Msa0132450:CDS
TTAACAATGTTAAGAACCCG+TGG 0.679719 1_3:-63515057 Msa0132450:three_prime_UTR
ATAGATCAAAGTCAAGGACG+AGG 0.680422 1_3:-63519030 Msa0132450:CDS
AAGCATCCAAACATAACACA+AGG 0.689131 1_3:-63515408 Msa0132450:CDS
ACTGTAGATGCCCAATGCTG+CGG 0.690338 1_3:-63516479 Msa0132450:intron
CGTGCTCTATCCCATAACAG+TGG 0.694871 1_3:-63518675 Msa0132450:CDS
ACTAACATAATGTAGAGTAG+GGG 0.698565 1_3:-63514829 Msa0132450:three_prime_UTR
TGTGGGGCACGAAATATCCG+AGG 0.714184 1_3:-63520335 Msa0132450:intron
TAGTCGCTTATCAAACAACA+TGG 0.721208 1_3:+63515446 None:intergenic
ATCTTCTCCACAGATCCATG+AGG 0.742999 1_3:+63518629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAAAAAATAAAAAT+TGG + chr1_3:63514658-63514677 None:intergenic 0.0%
!!! TATAGTTTTTTTTTTTTTTG+GGG - chr1_3:63514863-63514882 Msa0132450:three_prime_UTR 10.0%
!!! TCTAATTATCTTTTTATTTT+AGG - chr1_3:63516405-63516424 Msa0132450:CDS 10.0%
!!! CTAATTATCTTTTTATTTTA+GGG - chr1_3:63516406-63516425 Msa0132450:CDS 10.0%
!!! TAATTATCTTTTTATTTTAG+GGG - chr1_3:63516407-63516426 Msa0132450:CDS 10.0%
!!! TTTTTTTTTTTTATGTTTAG+CGG - chr1_3:63517467-63517486 Msa0132450:intron 10.0%
!!! TTTTTTTTTTAAATGTTTAG+TGG - chr1_3:63517537-63517556 Msa0132450:intron 10.0%
!!! TTTGTAATTACATTTTTATA+TGG - chr1_3:63517597-63517616 Msa0132450:intron 10.0%
!!! ATTTACTTTAATTTCTTATA+TGG - chr1_3:63518048-63518067 Msa0132450:intron 10.0%
!!! AATTGTTGTGTTTTTTTTTT+GGG - chr1_3:63515287-63515306 Msa0132450:CDS 15.0%
!! TTATGTTCATTTACAATTAT+AGG - chr1_3:63515894-63515913 Msa0132450:intron 15.0%
!!! AATTATCTTTTTATTTTAGG+GGG - chr1_3:63516408-63516427 Msa0132450:CDS 15.0%
!! ATTCAGAAAAAAACTTAAAA+GGG + chr1_3:63516966-63516985 None:intergenic 15.0%
!! AATTCAGAAAAAAACTTAAA+AGG + chr1_3:63516967-63516986 None:intergenic 15.0%
!!! TTTTTTTTTTTATGTTTAGC+GGG - chr1_3:63517468-63517487 Msa0132450:intron 15.0%
!! AATTAAAGTAAATAAGAGAA+AGG + chr1_3:63518041-63518060 None:intergenic 15.0%
!! AAAAAATTTCACAAATTGAT+TGG + chr1_3:63518753-63518772 None:intergenic 15.0%
!! AAAAAAATAAGAGAATAGAA+CGG + chr1_3:63518981-63519000 None:intergenic 15.0%
!! TTATAATTAAATATTCAGCA+AGG + chr1_3:63519381-63519400 None:intergenic 15.0%
!! GAATATTTAATTATAATACC+AGG - chr1_3:63519385-63519404 Msa0132450:intron 15.0%
!!! ATTATTTTCTTAATTTTGGT+CGG - chr1_3:63519490-63519509 Msa0132450:CDS 15.0%
!! ATTTAAGTAAATGATTTACA+TGG + chr1_3:63519657-63519676 None:intergenic 15.0%
!! ACTTTGTTAAAAAAAAAATC+AGG + chr1_3:63519807-63519826 None:intergenic 15.0%
!!! ATGTGTTAAATAATATGTTT+TGG - chr1_3:63519849-63519868 Msa0132450:intron 15.0%
!! AATCTTATAAATAGAAAAGA+GGG + chr1_3:63520006-63520025 None:intergenic 15.0%
!! GATTTAAAAATAAATAAAGG+TGG + chr1_3:63520774-63520793 None:intergenic 15.0%
!!! TTTAAATCATTGTTGTATTT+TGG - chr1_3:63520786-63520805 Msa0132450:five_prime_UTR 15.0%
!!! AATTCAACTAGAAAATTTTA+TGG + chr1_3:63520842-63520861 None:intergenic 15.0%
!!! ATTTTGTTTGAAAACAGAAT+TGG + chr1_3:63514821-63514840 None:intergenic 20.0%
!!! TGATAATGATAGTCATAAAT+TGG - chr1_3:63514992-63515011 Msa0132450:three_prime_UTR 20.0%
!! GTTTACAGATTAATTTATCA+TGG - chr1_3:63515117-63515136 Msa0132450:CDS 20.0%
!!! CAATTGTTGTGTTTTTTTTT+TGG - chr1_3:63515286-63515305 Msa0132450:CDS 20.0%
!!! TTTTAGATATTGATTGTGAT+TGG - chr1_3:63515415-63515434 Msa0132450:CDS 20.0%
!! AAACAAACAATTTCATTTGA+AGG + chr1_3:63516098-63516117 None:intergenic 20.0%
!! CCAATTAATATTAAAATCTC+CGG - chr1_3:63516377-63516396 Msa0132450:intron 20.0%
!! AAAAGATAATTAGATTGTTC+CGG + chr1_3:63516399-63516418 None:intergenic 20.0%
!! AAGTATATGATAAAGAGAAA+AGG + chr1_3:63516701-63516720 None:intergenic 20.0%
!!! ACTTTTTTCTAAGTTGTTAA+TGG + chr1_3:63517111-63517130 None:intergenic 20.0%
!! TGTATTTGTAATAGTATGTT+TGG + chr1_3:63517254-63517273 None:intergenic 20.0%
!! ACTTCTAAATGAATTTCTAA+AGG - chr1_3:63517427-63517446 Msa0132450:intron 20.0%
!! AAAATGTAATTACAAAGCAA+GGG + chr1_3:63517593-63517612 None:intergenic 20.0%
!! AAAAATGTAATTACAAAGCA+AGG + chr1_3:63517594-63517613 None:intergenic 20.0%
!!! ATTTTATTTGATGCATGTAT+AGG - chr1_3:63517647-63517666 Msa0132450:intron 20.0%
!!! TAACATTTTCTTTCTGTTTT+TGG - chr1_3:63517790-63517809 Msa0132450:CDS 20.0%
!!! CTAAATATTGATTGAAACTT+TGG - chr1_3:63517845-63517864 Msa0132450:intron 20.0%
!! TCTAAATAATTTCTGTGTAT+TGG - chr1_3:63517942-63517961 Msa0132450:intron 20.0%
!!! CTTTATTTATCTGTTATGAA+TGG - chr1_3:63518318-63518337 Msa0132450:intron 20.0%
!!! TTTATTTTGCTTTTCAAATC+TGG - chr1_3:63518815-63518834 Msa0132450:intron 20.0%
!!! TTATTTTGCTTTTCAAATCT+GGG - chr1_3:63518816-63518835 Msa0132450:intron 20.0%
!!! AGTATGATTTTTTAGAAATC+TGG - chr1_3:63518932-63518951 Msa0132450:intron 20.0%
!!! TTTAGTTTATTCAGATTTGA+TGG + chr1_3:63519958-63519977 None:intergenic 20.0%
!! CAATCTTATAAATAGAAAAG+AGG + chr1_3:63520007-63520026 None:intergenic 20.0%
!!! ATTTTCAATTTTGAGATGTA+GGG - chr1_3:63520035-63520054 Msa0132450:intron 20.0%
!!! CTTCAACTTTTTCTTTTAAC+TGG + chr1_3:63515019-63515038 None:intergenic 25.0%
!!! ATGTTTTTATGACTATGCTA+TGG - chr1_3:63515261-63515280 Msa0132450:CDS 25.0%
! TCACTTTCTCTAATTATTAC+CGG - chr1_3:63515563-63515582 Msa0132450:intron 25.0%
! GCAAAAGTTATAAATCTTTC+AGG + chr1_3:63515974-63515993 None:intergenic 25.0%
!! GAAAGAAAAAACCTGATTTT+TGG + chr1_3:63516072-63516091 None:intergenic 25.0%
! TGATATCAAAACAATAGTTG+TGG + chr1_3:63516313-63516332 None:intergenic 25.0%
!!! CCGGAGATTTTAATATTAAT+TGG + chr1_3:63516380-63516399 None:intergenic 25.0%
! ATAACAATACAAAGATCTAG+GGG + chr1_3:63516622-63516641 None:intergenic 25.0%
! GATAACAATACAAAGATCTA+GGG + chr1_3:63516623-63516642 None:intergenic 25.0%
! AGATAACAATACAAAGATCT+AGG + chr1_3:63516624-63516643 None:intergenic 25.0%
! GATCTTTGTATTGTTATCTT+AGG - chr1_3:63516625-63516644 Msa0132450:intron 25.0%
! GAATTGTAACTAAGAGAATT+CGG + chr1_3:63516807-63516826 None:intergenic 25.0%
!!! AATTTTAACAGAGTGAATTG+AGG - chr1_3:63516983-63517002 Msa0132450:intron 25.0%
!! GTATGTTTGGAATATATGAA+GGG + chr1_3:63517241-63517260 None:intergenic 25.0%
!! AGTATGTTTGGAATATATGA+AGG + chr1_3:63517242-63517261 None:intergenic 25.0%
! TTGAATAAGTATAAGCATAG+TGG - chr1_3:63517314-63517333 Msa0132450:intron 25.0%
!! TGATGTTGTTTGTATGTAAT+AGG - chr1_3:63517381-63517400 Msa0132450:intron 25.0%
!! TTGAAACTTTGGAAATTTCT+AGG - chr1_3:63517856-63517875 Msa0132450:intron 25.0%
!! TGAAACTTTGGAAATTTCTA+GGG - chr1_3:63517857-63517876 Msa0132450:intron 25.0%
! AGTAAATAAGAGAAAGGAAA+AGG + chr1_3:63518035-63518054 None:intergenic 25.0%
! AATTCACTTGTAATTCATCA+AGG + chr1_3:63518094-63518113 None:intergenic 25.0%
! ATTATAATAATGACCGTTCA+AGG - chr1_3:63518111-63518130 Msa0132450:intron 25.0%
!!! CTAAATTTAACTGATTTGGT+TGG - chr1_3:63518480-63518499 Msa0132450:intron 25.0%
! AAAAATGTGTAATGGTTGTA+AGG - chr1_3:63518691-63518710 Msa0132450:CDS 25.0%
! AAACAAATTTCGAGCTAAAT+AGG + chr1_3:63519191-63519210 None:intergenic 25.0%
! TTTATACAACGATAAATCTC+TGG + chr1_3:63519471-63519490 None:intergenic 25.0%
! TATTCCACACAATATACAAA+GGG + chr1_3:63519729-63519748 None:intergenic 25.0%
! TTATTCCACACAATATACAA+AGG + chr1_3:63519730-63519749 None:intergenic 25.0%
!! AGGATCTATTTTATAAGTAG+AGG - chr1_3:63519762-63519781 Msa0132450:intron 25.0%
!!! GATTTTCAATTTTGAGATGT+AGG - chr1_3:63520034-63520053 Msa0132450:intron 25.0%
!!! AAATACTTTGCTATTGACAA+TGG + chr1_3:63520288-63520307 None:intergenic 25.0%
! TATATTCTGCAATTGAGAAT+AGG + chr1_3:63520423-63520442 None:intergenic 25.0%
! TCTTCTTCATTATCTTGTAA+TGG - chr1_3:63520555-63520574 Msa0132450:intron 25.0%
! AAGATGAGAAAAGAAATGAT+GGG + chr1_3:63520632-63520651 None:intergenic 25.0%
! TTACTAACATAATGTAGAGT+AGG - chr1_3:63520675-63520694 Msa0132450:intron 25.0%
! TACTAACATAATGTAGAGTA+GGG - chr1_3:63520676-63520695 Msa0132450:intron 25.0%
! ATACAACATAATGGCATATT+TGG + chr1_3:63520812-63520831 None:intergenic 25.0%
CTTAGATTCAGTCTTCAATT+GGG - chr1_3:63514709-63514728 Msa0132450:three_prime_UTR 30.0%
! TGAAAACAGAATTGGTGATT+TGG + chr1_3:63514813-63514832 None:intergenic 30.0%
!! TTTTAGAAATTTCTTCGCAG+TGG - chr1_3:63515378-63515397 Msa0132450:CDS 30.0%
CGCACATTCAAAACAAAAAA+TGG + chr1_3:63515444-63515463 None:intergenic 30.0%
!! ACTTTTTCTTAGACCATGAT+CGG - chr1_3:63515769-63515788 Msa0132450:intron 30.0%
!! CTTCAGTTATTTCAACCTTT+TGG - chr1_3:63516017-63516036 Msa0132450:intron 30.0%
!! TGGAGCACTTTTAAATTCTA+AGG + chr1_3:63516122-63516141 None:intergenic 30.0%
! GTTAGTGCTTTACAGTTTTA+TGG - chr1_3:63516238-63516257 Msa0132450:CDS 30.0%
ATGATCTTTGTCATCACATA+CGG - chr1_3:63516332-63516351 Msa0132450:intron 30.0%
!!! TATCTTTTTATTTTAGGGGG+CGG - chr1_3:63516411-63516430 Msa0132450:CDS 30.0%
ACAACAATAGATCAAAGTCA+AGG - chr1_3:63516470-63516489 Msa0132450:CDS 30.0%
!!! TATCAAGTTTTTTCTCCTCA+TGG - chr1_3:63516862-63516881 Msa0132450:intron 30.0%
TTTGTATGTAATAGGCACAT+AGG - chr1_3:63517389-63517408 Msa0132450:intron 30.0%
ACGCATTATGCATGAATTAA+TGG - chr1_3:63517508-63517527 Msa0132450:intron 30.0%
AAAACAAGAACTAACAAGTC+CGG + chr1_3:63517821-63517840 None:intergenic 30.0%
GGATATTCAATTCTCAAAGT+AGG - chr1_3:63517910-63517929 Msa0132450:intron 30.0%
!! ATAATTTCTGTGTATTGGCT+TGG - chr1_3:63517947-63517966 Msa0132450:intron 30.0%
GGTGCTAAATTTAACTGATT+TGG - chr1_3:63518476-63518495 Msa0132450:intron 30.0%
ATATGAAAAATACTCACCTG+TGG + chr1_3:63518585-63518604 None:intergenic 30.0%
GTCACAGTTTGATATTATTC+TGG - chr1_3:63518614-63518633 Msa0132450:CDS 30.0%
GCAACACTAAAAATGTGTAA+TGG - chr1_3:63518683-63518702 Msa0132450:CDS 30.0%
GTAATGGTTGTAAGGTATAA+CGG - chr1_3:63518699-63518718 Msa0132450:CDS 30.0%
! TTTTCAAATCTGGGTTTGAT+AGG - chr1_3:63518825-63518844 Msa0132450:intron 30.0%
TTTCAAATCTGGGTTTGATA+GGG - chr1_3:63518826-63518845 Msa0132450:intron 30.0%
!!! TGTTTTGAGTTTCTGTTTCT+TGG - chr1_3:63518863-63518882 Msa0132450:intron 30.0%
TCTCACAATGTTTCCATAAA+GGG + chr1_3:63519255-63519274 None:intergenic 30.0%
TTCTCACAATGTTTCCATAA+AGG + chr1_3:63519256-63519275 None:intergenic 30.0%
GTAAATTCATCAAGTAAACC+TGG + chr1_3:63519406-63519425 None:intergenic 30.0%
CAGCAAACAACAATTACTTA+TGG + chr1_3:63519430-63519449 None:intergenic 30.0%
TTCATCACAAGTTTCTTTGA+TGG - chr1_3:63519538-63519557 Msa0132450:intron 30.0%
AAATCACATTTCTCTTTCTC+TGG - chr1_3:63519618-63519637 Msa0132450:intron 30.0%
TGGAATAAGATTGCAATTGA+AGG - chr1_3:63519742-63519761 Msa0132450:intron 30.0%
TCAGTTGTAATATTCTGACA+TGG - chr1_3:63519916-63519935 Msa0132450:intron 30.0%
ACAAATGAATCATCTTCGTT+GGG + chr1_3:63520205-63520224 None:intergenic 30.0%
! AGCAAAGTATTTGAGATGAA+TGG - chr1_3:63520296-63520315 Msa0132450:intron 30.0%
! GCAAAGTATTTGAGATGAAT+GGG - chr1_3:63520297-63520316 Msa0132450:intron 30.0%
TCTTCATTATCTTGTAATGG+TGG - chr1_3:63520558-63520577 Msa0132450:intron 30.0%
AGATGAGAAAAGAAATGATG+GGG + chr1_3:63520631-63520650 None:intergenic 30.0%
GAAGATGAGAAAAGAAATGA+TGG + chr1_3:63520633-63520652 None:intergenic 30.0%
ACTAACATAATGTAGAGTAG+GGG - chr1_3:63520677-63520696 Msa0132450:intron 30.0%
AAATAAAGGTGGTGAAAAGA+AGG + chr1_3:63520763-63520782 None:intergenic 30.0%
GGATTGAGAATACAACATAA+TGG + chr1_3:63520821-63520840 None:intergenic 30.0%
ATTGAAGACTGAATCTAAGG+AGG + chr1_3:63514708-63514727 None:intergenic 35.0%
CCAATTGAAGACTGAATCTA+AGG + chr1_3:63514711-63514730 None:intergenic 35.0%
CCTTAGATTCAGTCTTCAAT+TGG - chr1_3:63514708-63514727 Msa0132450:three_prime_UTR 35.0%
ATTTCGAACATGAATGACCT+TGG + chr1_3:63515152-63515171 None:intergenic 35.0%
GTCATTCATGTTCGAAATGT+GGG - chr1_3:63515154-63515173 Msa0132450:CDS 35.0%
TCATTCATGTTCGAAATGTG+GGG - chr1_3:63515155-63515174 Msa0132450:CDS 35.0%
GAGAAAGAAAGTGAGAATCA+GGG + chr1_3:63515202-63515221 None:intergenic 35.0%
AGAGAAAGAAAGTGAGAATC+AGG + chr1_3:63515203-63515222 None:intergenic 35.0%
TTTCCTGATAAAAAGAGTCC+AGG + chr1_3:63515352-63515371 None:intergenic 35.0%
TGTGAAATAAATGCCGATCA+TGG + chr1_3:63515785-63515804 None:intergenic 35.0%
TCGACATGATTGGATAAGAA+TGG - chr1_3:63515821-63515840 Msa0132450:intron 35.0%
TGATTGGATAAGAATGGAGT+TGG - chr1_3:63515827-63515846 Msa0132450:intron 35.0%
AAATCATTCTGCAATCACAG+TGG + chr1_3:63515996-63516015 None:intergenic 35.0%
TGGATAAGTGCCTGTAAATA+CGG + chr1_3:63516196-63516215 None:intergenic 35.0%
TTAGGCTGTTACATTTCAGT+GGG - chr1_3:63516643-63516662 Msa0132450:intron 35.0%
AAGAGAAGAGATAGAGAGAA+AGG + chr1_3:63516737-63516756 None:intergenic 35.0%
GTAACTAAGAGAATTCGGTT+TGG + chr1_3:63516802-63516821 None:intergenic 35.0%
TACAGTACATCCACTGTTAT+GGG + chr1_3:63516844-63516863 None:intergenic 35.0%
ATACAGTACATCCACTGTTA+TGG + chr1_3:63516845-63516864 None:intergenic 35.0%
AGGGAAAGAAAGAAGAGAAA+GGG + chr1_3:63516947-63516966 None:intergenic 35.0%
AAGGGAAAGAAAGAAGAGAA+AGG + chr1_3:63516948-63516967 None:intergenic 35.0%
TAACAGTGTCCAAGTACTAA+TGG + chr1_3:63517086-63517105 None:intergenic 35.0%
! ATAAGCATAGTGGTGTCAAT+TGG - chr1_3:63517324-63517343 Msa0132450:intron 35.0%
TGTTATGCTACTATGAGAGT+TGG + chr1_3:63517359-63517378 None:intergenic 35.0%
AATAGGCACATAGGAGAAAA+AGG - chr1_3:63517398-63517417 Msa0132450:CDS 35.0%
ATAGGCACATAGGAGAAAAA+GGG - chr1_3:63517399-63517418 Msa0132450:CDS 35.0%
TACTTGCTTACGAACTTTGT+AGG - chr1_3:63517697-63517716 Msa0132450:intron 35.0%
AACTCTGTTGTGATTGATAC+TGG + chr1_3:63517738-63517757 None:intergenic 35.0%
!!! CTTTCTGTTTTTGGCTTTAC+CGG - chr1_3:63517799-63517818 Msa0132450:intron 35.0%
TAGGGTCGCAATATTTATGA+TGG - chr1_3:63517875-63517894 Msa0132450:intron 35.0%
AAGAGAAAGGAAAAGGTAGA+AGG + chr1_3:63518028-63518047 None:intergenic 35.0%
TTGGCTACAATCGTAAAACT+TGG + chr1_3:63518734-63518753 None:intergenic 35.0%
! AGTTTCTGTTTCTTGGACAA+TGG - chr1_3:63518870-63518889 Msa0132450:intron 35.0%
GAATAACTGGGACAAATGAT+AGG - chr1_3:63519086-63519105 Msa0132450:intron 35.0%
!! AAAGAGAAAGCACTTACATC+AGG + chr1_3:63519139-63519158 None:intergenic 35.0%
! TTCAACTTGTTCTCCCTTTA+TGG - chr1_3:63519239-63519258 Msa0132450:intron 35.0%
ACATTTCTCTTTCTCTGGTT+CGG - chr1_3:63519623-63519642 Msa0132450:intron 35.0%
TGATCCCTTTGTATATTGTG+TGG - chr1_3:63519722-63519741 Msa0132450:intron 35.0%
GTAGTACTAGTTGTTGTGTT+TGG - chr1_3:63519825-63519844 Msa0132450:intron 35.0%
! TTGATGGCACTAAACAATGT+TGG + chr1_3:63519942-63519961 None:intergenic 35.0%
TAGTCGCTTATCAAACAACA+TGG + chr1_3:63520063-63520082 None:intergenic 35.0%
AAGCATCCAAACATAACACA+AGG - chr1_3:63520098-63520117 Msa0132450:intron 35.0%
TAGCAGCGTTACGATTAAAA+CGG + chr1_3:63520160-63520179 None:intergenic 35.0%
CAAATGAATCATCTTCGTTG+GGG + chr1_3:63520204-63520223 None:intergenic 35.0%
GACAAATGAATCATCTTCGT+TGG + chr1_3:63520206-63520225 None:intergenic 35.0%
ACGGGTTCTTAACATTGTTA+AGG + chr1_3:63520450-63520469 None:intergenic 35.0%
TTAACAATGTTAAGAACCCG+TGG - chr1_3:63520449-63520468 Msa0132450:intron 35.0%
AGAGACAAGGATTCTGAATT+TGG - chr1_3:63520502-63520521 Msa0132450:intron 35.0%
ACAAGGATTCTGAATTTGGA+AGG - chr1_3:63520506-63520525 Msa0132450:intron 35.0%
ATTGGTGAAAGTTGAGTCTT+AGG - chr1_3:63520713-63520732 Msa0132450:intron 35.0%
GTTGAGTCTTAGGAATAGAA+AGG - chr1_3:63520723-63520742 Msa0132450:intron 35.0%
AGTCTTAGGAATAGAAAGGA+GGG - chr1_3:63520727-63520746 Msa0132450:intron 35.0%
GGTCATTCATGTTCGAAATG+TGG - chr1_3:63515153-63515172 Msa0132450:CDS 40.0%
GAACTTGACATTGACCAAGA+GGG - chr1_3:63515309-63515328 Msa0132450:CDS 40.0%
ACCAAGAGGGTGAATGAAAA+GGG - chr1_3:63515322-63515341 Msa0132450:CDS 40.0%
! AGACCTGGACTCTTTTTATC+AGG - chr1_3:63515346-63515365 Msa0132450:CDS 40.0%
TCGAATGTAATCACGTGTGT+CGG + chr1_3:63515538-63515557 None:intergenic 40.0%
CAATGTGTCAATGTCGTGTT+CGG - chr1_3:63515589-63515608 Msa0132450:intron 40.0%
! AGCTTTGTGATGACTCCAAA+AGG + chr1_3:63516035-63516054 None:intergenic 40.0%
GATGTTACGTGCCAAAAATC+AGG - chr1_3:63516058-63516077 Msa0132450:intron 40.0%
AATGTGTGAGCCGTATTTAC+AGG - chr1_3:63516183-63516202 Msa0132450:CDS 40.0%
! TGTAAAGCACTAACTGCAGA+AGG + chr1_3:63516232-63516251 None:intergenic 40.0%
!! AGCTAAGAGTACCTTATGCT+TGG + chr1_3:63516274-63516293 None:intergenic 40.0%
GCTCTTGATGAGATGAAAAC+TGG + chr1_3:63516448-63516467 None:intergenic 40.0%
ATAGATCAAAGTCAAGGACG+AGG - chr1_3:63516476-63516495 Msa0132450:intron 40.0%
! TGTCGATTGCTTACAAAAGC+AGG - chr1_3:63516556-63516575 Msa0132450:intron 40.0%
CTTACAAAAGCAGGCAGAAT+TGG - chr1_3:63516565-63516584 Msa0132450:intron 40.0%
CTTAGGCTGTTACATTTCAG+TGG - chr1_3:63516642-63516661 Msa0132450:intron 40.0%
! TTTTTCTCCTCATGGATCTG+TGG - chr1_3:63516870-63516889 Msa0132450:intron 40.0%
AGTGTCCAAGTACTAATGGT+GGG + chr1_3:63517082-63517101 None:intergenic 40.0%
TACGAACTTTGTAGGCTTTC+AGG - chr1_3:63517705-63517724 Msa0132450:intron 40.0%
AAGGAAAAGGTAGAAGGTTG+AGG + chr1_3:63518022-63518041 None:intergenic 40.0%
AGAGACTGAATCACCTTGAA+CGG + chr1_3:63518127-63518146 None:intergenic 40.0%
TCTGTTCTGTAGGGAGATTT+GGG + chr1_3:63518234-63518253 None:intergenic 40.0%
TTCTGTTCTGTAGGGAGATT+TGG + chr1_3:63518235-63518254 None:intergenic 40.0%
AATCTCCCTACAGAACAGAA+AGG - chr1_3:63518235-63518254 Msa0132450:intron 40.0%
CAAACGAAACATACTTGTGG+AGG + chr1_3:63518265-63518284 None:intergenic 40.0%
CTCCACAAGTATGTTTCGTT+TGG - chr1_3:63518263-63518282 Msa0132450:intron 40.0%
AGCCAAACGAAACATACTTG+TGG + chr1_3:63518268-63518287 None:intergenic 40.0%
ACTTCGCAAAGATCAATGAG+AGG + chr1_3:63518347-63518366 None:intergenic 40.0%
TCATCTTCTGTGAAACAGCT+TGG - chr1_3:63518401-63518420 Msa0132450:intron 40.0%
TCTGTGAAACAGCTTGGATA+TGG - chr1_3:63518407-63518426 Msa0132450:intron 40.0%
TTAAATTTAGCACCTGCCCT+GGG + chr1_3:63518470-63518489 None:intergenic 40.0%
AATCTGGGTTTGATAGGGAA+AGG - chr1_3:63518831-63518850 Msa0132450:intron 40.0%
ATCTGGGTTTGATAGGGAAA+GGG - chr1_3:63518832-63518851 Msa0132450:intron 40.0%
GTTTACCTCCTGGAATAACT+GGG - chr1_3:63519074-63519093 Msa0132450:CDS 40.0%
TCATTTGTCCCAGTTATTCC+AGG + chr1_3:63519085-63519104 None:intergenic 40.0%
ATCTGGATAAGTGCATGATC+TGG + chr1_3:63519299-63519318 None:intergenic 40.0%
AGATCATGCACTTATCCAGA+TGG - chr1_3:63519298-63519317 Msa0132450:CDS 40.0%
GATCATGCACTTATCCAGAT+GGG - chr1_3:63519299-63519318 Msa0132450:CDS 40.0%
GTTGTTTGATAAGCGACTAG+AGG - chr1_3:63520064-63520083 Msa0132450:intron 40.0%
TCAGCACCTTGTGTTATGTT+TGG + chr1_3:63520107-63520126 None:intergenic 40.0%
CATCTTCAGTGATGTCTTGT+GGG + chr1_3:63520235-63520254 None:intergenic 40.0%
TCATCTTCAGTGATGTCTTG+TGG + chr1_3:63520236-63520255 None:intergenic 40.0%
GAGATGAATGGGAAGAAACA+AGG - chr1_3:63520308-63520327 Msa0132450:intron 40.0%
GAGCATAACAACCGTTACTT+CGG + chr1_3:63520479-63520498 None:intergenic 40.0%
TGTTATGCTCAGTAGAGACA+AGG - chr1_3:63520489-63520508 Msa0132450:intron 40.0%
!! AGGGGTGTAGATTTTGTGAT+TGG - chr1_3:63520695-63520714 Msa0132450:intron 40.0%
GAGTCTTAGGAATAGAAAGG+AGG - chr1_3:63520726-63520745 Msa0132450:intron 40.0%
GTCTTAGGAATAGAAAGGAG+GGG - chr1_3:63520728-63520747 Msa0132450:intron 40.0%
TATCATGGCTGAACCTTCCA+AGG - chr1_3:63515132-63515151 Msa0132450:CDS 45.0%
CGAACATGAATGACCTTGGA+AGG + chr1_3:63515148-63515167 None:intergenic 45.0%
!! TGAGAATCAGGGAAGTACCT+CGG + chr1_3:63515191-63515210 None:intergenic 45.0%
GGAACTTGACATTGACCAAG+AGG - chr1_3:63515308-63515327 Msa0132450:CDS 45.0%
GACCAAGAGGGTGAATGAAA+AGG - chr1_3:63515321-63515340 Msa0132450:CDS 45.0%
! ACCCTTTTCATTCACCCTCT+TGG + chr1_3:63515326-63515345 None:intergenic 45.0%
GTGAATGAAAAGGGTAGACC+TGG - chr1_3:63515331-63515350 Msa0132450:CDS 45.0%
CTTCTAATCAAAGCCGTGTC+TGG - chr1_3:63515503-63515522 Msa0132450:intron 45.0%
CGACATTGACACATTGACAC+CGG + chr1_3:63515585-63515604 None:intergenic 45.0%
TCTTCATGTCAGTGCTTCGT+TGG - chr1_3:63515656-63515675 Msa0132450:intron 45.0%
AGTGAAAGGACAGCACATCT+AGG + chr1_3:63515700-63515719 None:intergenic 45.0%
TGTGCTGTCCTTTCACTGAA+TGG - chr1_3:63515703-63515722 Msa0132450:intron 45.0%
TACTCGAGCCATTCAGTGAA+AGG + chr1_3:63515714-63515733 None:intergenic 45.0%
CAGCTTTCTGTCGACATGAT+TGG - chr1_3:63515811-63515830 Msa0132450:intron 45.0%
CAGAAGGAACGTCTTGCATT+TGG + chr1_3:63516216-63516235 None:intergenic 45.0%
! AGAGTACCTTATGCTTGGCT+GGG + chr1_3:63516269-63516288 None:intergenic 45.0%
!! AAGAGTACCTTATGCTTGGC+TGG + chr1_3:63516270-63516289 None:intergenic 45.0%
ATCTTCTCCACAGATCCATG+AGG + chr1_3:63516880-63516899 None:intergenic 45.0%
GTGACATTTCAGAAGTCAGC+TGG - chr1_3:63516901-63516920 Msa0132450:intron 45.0%
!! CAAGTACTAATGGTGGGTGT+GGG + chr1_3:63517076-63517095 None:intergenic 45.0%
CAGTGTCCAAGTACTAATGG+TGG + chr1_3:63517083-63517102 None:intergenic 45.0%
! GTGGTGTCAATTGGTTCATG+TGG - chr1_3:63517333-63517352 Msa0132450:intron 45.0%
TACTGCAAGAACTGCACTTC+AGG - chr1_3:63517762-63517781 Msa0132450:CDS 45.0%
TTATGATGGTTGCTGTCAGC+TGG - chr1_3:63517889-63517908 Msa0132450:intron 45.0%
TGAAGTCTCTGTGAAAGACG+AGG + chr1_3:63518207-63518226 None:intergenic 45.0%
! AGGAAGCATGTATGGTGTTC+AGG - chr1_3:63518436-63518455 Msa0132450:intron 45.0%
! GGAAGCATGTATGGTGTTCA+GGG - chr1_3:63518437-63518456 Msa0132450:intron 45.0%
ATGTATGGTGTTCAGGGTTC+TGG - chr1_3:63518443-63518462 Msa0132450:intron 45.0%
GTTAAATTTAGCACCTGCCC+TGG + chr1_3:63518471-63518490 None:intergenic 45.0%
CTGAAAGGAGGGGGAAAAAA+CGG + chr1_3:63518554-63518573 None:intergenic 45.0%
! TTTTTCCCCCTCCTTTCAGT+CGG - chr1_3:63518555-63518574 Msa0132450:intron 45.0%
TGGATATCCGACTGAAAGGA+GGG + chr1_3:63518565-63518584 None:intergenic 45.0%
TCTGGGTTTGATAGGGAAAG+GGG - chr1_3:63518833-63518852 Msa0132450:intron 45.0%
GGTTTACCTCCTGGAATAAC+TGG - chr1_3:63519073-63519092 Msa0132450:CDS 45.0%
TTTGTCCCAGTTATTCCAGG+AGG + chr1_3:63519082-63519101 None:intergenic 45.0%
AGATGGTTTCCAAGCTGAAC+TGG - chr1_3:63519322-63519341 Msa0132450:intron 45.0%
ACTGGCTGTACACTTTCTGA+AGG - chr1_3:63519340-63519359 Msa0132450:intron 45.0%
TGAGATTGTGACCCTTCTAG+AGG - chr1_3:63520253-63520272 Msa0132450:intron 45.0%
! TCAGTTTGAGACTGAGGATC+AGG - chr1_3:63520337-63520356 Msa0132450:CDS 45.0%
GGTAGCATGCTTGCATACAA+GGG + chr1_3:63520372-63520391 None:intergenic 45.0%
AGGTAGCATGCTTGCATACA+AGG + chr1_3:63520373-63520392 None:intergenic 45.0%
!!! TTTATAGTTTTTTTTTTTTT+TGG - chr1_3:63514861-63514880 Msa0132450:three_prime_UTR 5.0%
!!! TTATAGTTTTTTTTTTTTTT+GGG - chr1_3:63514862-63514881 Msa0132450:three_prime_UTR 5.0%
!! AATAAATAAATAAAATGAAA+TGG + chr1_3:63516142-63516161 None:intergenic 5.0%
!!! ATAAATTATTTTCTTAATTT+TGG - chr1_3:63519486-63519505 Msa0132450:CDS 5.0%
!!! AATTTCTTAATTTATTTTAT+TGG - chr1_3:63519686-63519705 Msa0132450:intron 5.0%
!! AATGATTTAAAAATAAATAA+AGG + chr1_3:63520777-63520796 None:intergenic 5.0%
ATCAAAGCCGTGTCTGGTGT+CGG - chr1_3:63515509-63515528 Msa0132450:intron 50.0%
TGTCCATGCCAGTGCTTTGT+AGG - chr1_3:63515612-63515631 Msa0132450:intron 50.0%
GTCCATGCCAGTGCTTTGTA+GGG - chr1_3:63515613-63515632 Msa0132450:intron 50.0%
TCCATGCCAGTGCTTTGTAG+GGG - chr1_3:63515614-63515633 Msa0132450:intron 50.0%
GAAACACCCAGCCAAGCATA+AGG - chr1_3:63516260-63516279 Msa0132450:CDS 50.0%
AAGTCAAGGACGAGGAGATG+AGG - chr1_3:63516484-63516503 Msa0132450:intron 50.0%
CTCAATGCTGTCCTGCTGTT+TGG - chr1_3:63516758-63516777 Msa0132450:intron 50.0%
CGTGCTCTATCCCATAACAG+TGG - chr1_3:63516831-63516850 Msa0132450:intron 50.0%
!! CCAAGTACTAATGGTGGGTG+TGG + chr1_3:63517077-63517096 None:intergenic 50.0%
CCACACCCACCATTAGTACT+TGG - chr1_3:63517074-63517093 Msa0132450:CDS 50.0%
!! CTGTGTATTGGCTTGGCTTG+TGG - chr1_3:63517954-63517973 Msa0132450:intron 50.0%
TCCCTACAGAACAGAAAGGC+AGG - chr1_3:63518239-63518258 Msa0132450:intron 50.0%
GCCTGCCTTTCTGTTCTGTA+GGG + chr1_3:63518243-63518262 None:intergenic 50.0%
! CAGCTTGGATATGGTGATGC+AGG - chr1_3:63518416-63518435 Msa0132450:intron 50.0%
! GGTGATGCAGGAAGCATGTA+TGG - chr1_3:63518428-63518447 Msa0132450:intron 50.0%
GATATCCGACTGAAAGGAGG+GGG + chr1_3:63518563-63518582 None:intergenic 50.0%
GGATATCCGACTGAAAGGAG+GGG + chr1_3:63518564-63518583 None:intergenic 50.0%
GTGGATATCCGACTGAAAGG+AGG + chr1_3:63518566-63518585 None:intergenic 50.0%
CCTGTGGATATCCGACTGAA+AGG + chr1_3:63518569-63518588 None:intergenic 50.0%
CCTTTCAGTCGGATATCCAC+AGG - chr1_3:63518566-63518585 Msa0132450:intron 50.0%
ACTGTAGATGCCCAATGCTG+CGG - chr1_3:63519027-63519046 Msa0132450:CDS 50.0%
GCACTTATCCAGATGGGAGA+TGG - chr1_3:63519305-63519324 Msa0132450:intron 50.0%
CTTGGAAACCATCTCCCATC+TGG + chr1_3:63519316-63519335 None:intergenic 50.0%
AGTGTACAGCCAGTTCAGCT+TGG + chr1_3:63519334-63519353 None:intergenic 50.0%
AGTGATGTCTTGTGGGAGTG+TGG + chr1_3:63520228-63520247 None:intergenic 50.0%
! GGTTCCATGCTCCTCTAGAA+GGG + chr1_3:63520267-63520286 None:intergenic 50.0%
TGGTTCCATGCTCCTCTAGA+AGG + chr1_3:63520268-63520287 None:intergenic 50.0%
GAATGGGAAGAAACAAGGCC+TGG - chr1_3:63520313-63520332 Msa0132450:intron 50.0%
CCTCAGTCTCAAACTGAACC+AGG + chr1_3:63520334-63520353 None:intergenic 50.0%
! CCTGGTTCAGTTTGAGACTG+AGG - chr1_3:63520331-63520350 Msa0132450:intron 50.0%
AAGCATGCTACCTCGCTTTC+TGG - chr1_3:63520380-63520399 Msa0132450:exon 50.0%
AATTACCGAGCCAGAAAGCG+AGG + chr1_3:63520393-63520412 None:intergenic 50.0%
!! CGCTTTCTGGCTCGGTAATT+CGG - chr1_3:63520393-63520412 Msa0132450:intron 50.0%
ACCGTTACTTCGGTTGTCCA+CGG + chr1_3:63520469-63520488 None:intergenic 50.0%
TGTGGGGCACGAAATATCCG+AGG - chr1_3:63515171-63515190 Msa0132450:CDS 55.0%
!! ACCCCTACAAAGCACTGGCA+TGG + chr1_3:63515618-63515637 None:intergenic 55.0%
CACACACCCCTACAAAGCAC+TGG + chr1_3:63515623-63515642 None:intergenic 55.0%
CAAGGACGAGGAGATGAGGT+TGG - chr1_3:63516488-63516507 Msa0132450:intron 55.0%
! TCCTGCTGTTTGGAACCCTC+TGG - chr1_3:63516768-63516787 Msa0132450:intron 55.0%
TCCAGAGGGTTCCAAACAGC+AGG + chr1_3:63516772-63516791 None:intergenic 55.0%
GGTTTGGCTGTGCATCCAGA+GGG + chr1_3:63516786-63516805 None:intergenic 55.0%
GGCCTGCCTTTCTGTTCTGT+AGG + chr1_3:63518244-63518263 None:intergenic 55.0%
!! TGTTCAGGGTTCTGGACCCA+GGG - chr1_3:63518451-63518470 Msa0132450:intron 55.0%
!!! CGGCCATTGCAGCTGCTTTT+GGG - chr1_3:63519047-63519066 Msa0132450:CDS 55.0%
!!! GGCCATTGCAGCTGCTTTTG+GGG - chr1_3:63519048-63519067 Msa0132450:CDS 55.0%
!!! GCCATTGCAGCTGCTTTTGG+GGG - chr1_3:63519049-63519068 Msa0132450:CDS 55.0%
TCCCCCAAAAGCAGCTGCAA+TGG + chr1_3:63519053-63519072 None:intergenic 55.0%
!!! ATTGCAGCTGCTTTTGGGGG+AGG - chr1_3:63519052-63519071 Msa0132450:CDS 55.0%
TTTGGGGGAGGTTTACCTCC+TGG - chr1_3:63519064-63519083 Msa0132450:CDS 55.0%
TCGTTGGGGAGCAGCAATAG+CGG + chr1_3:63520190-63520209 None:intergenic 55.0%
! GTGACCCTTCTAGAGGAGCA+TGG - chr1_3:63520260-63520279 Msa0132450:intron 55.0%
!! TGCTACCTCGCTTTCTGGCT+CGG - chr1_3:63520385-63520404 Msa0132450:intron 55.0%
CCGTTACTTCGGTTGTCCAC+GGG + chr1_3:63520468-63520487 None:intergenic 55.0%
CCCGTGGACAACCGAAGTAA+CGG - chr1_3:63520465-63520484 Msa0132450:intron 55.0%
! TCGGTGTCCGACACCAGACA+CGG + chr1_3:63515519-63515538 None:intergenic 60.0%
! CGGTTTGGCTGTGCATCCAG+AGG + chr1_3:63516787-63516806 None:intergenic 60.0%
GAGTGCACGAGCATGGGTGT+GGG + chr1_3:63517054-63517073 None:intergenic 60.0%
! GTGTGGGAGTGCACGAGCAT+GGG + chr1_3:63517060-63517079 None:intergenic 60.0%
!! GTGTTCAGGGTTCTGGACCC+AGG - chr1_3:63518450-63518469 Msa0132450:intron 60.0%
GCTGCAATGGCCGCAGCATT+GGG + chr1_3:63519040-63519059 None:intergenic 60.0%
AGCTGCAATGGCCGCAGCAT+TGG + chr1_3:63519041-63519060 None:intergenic 60.0%
!! GCGGCCATTGCAGCTGCTTT+TGG - chr1_3:63519046-63519065 Msa0132450:CDS 60.0%
GGAGTGCACGAGCATGGGTG+TGG + chr1_3:63517055-63517074 None:intergenic 65.0%
! GGTGTGGGAGTGCACGAGCA+TGG + chr1_3:63517061-63517080 None:intergenic 65.0%
!! CAGGGTTCTGGACCCAGGGC+AGG - chr1_3:63518455-63518474 Msa0132450:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63514654 63520874 63514654 ID=Msa0132450;Name=Msa0132450
chr1_3 mRNA 63514654 63520874 63514654 ID=Msa0132450-mRNA-1;Parent=Msa0132450;Name=Msa0132450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=157|1|1|1|0.92|0.86|15|429|443
chr1_3 exon 63514654 63515472 63514654 ID=Msa0132450-mRNA-1:exon:21313;Parent=Msa0132450-mRNA-1
chr1_3 exon 63516167 63516310 63516167 ID=Msa0132450-mRNA-1:exon:21312;Parent=Msa0132450-mRNA-1
chr1_3 exon 63516387 63516494 63516387 ID=Msa0132450-mRNA-1:exon:21311;Parent=Msa0132450-mRNA-1
chr1_3 exon 63516941 63516954 63516941 ID=Msa0132450-mRNA-1:exon:21310;Parent=Msa0132450-mRNA-1
chr1_3 exon 63517052 63517109 63517052 ID=Msa0132450-mRNA-1:exon:21309;Parent=Msa0132450-mRNA-1
chr1_3 exon 63517258 63517309 63517258 ID=Msa0132450-mRNA-1:exon:21308;Parent=Msa0132450-mRNA-1
chr1_3 exon 63517396 63517437 63517396 ID=Msa0132450-mRNA-1:exon:21307;Parent=Msa0132450-mRNA-1
chr1_3 exon 63517601 63517650 63517601 ID=Msa0132450-mRNA-1:exon:21306;Parent=Msa0132450-mRNA-1
chr1_3 exon 63517745 63517809 63517745 ID=Msa0132450-mRNA-1:exon:21305;Parent=Msa0132450-mRNA-1
chr1_3 exon 63518606 63518729 63518606 ID=Msa0132450-mRNA-1:exon:21304;Parent=Msa0132450-mRNA-1
chr1_3 exon 63519023 63519101 63519023 ID=Msa0132450-mRNA-1:exon:21303;Parent=Msa0132450-mRNA-1
chr1_3 exon 63519247 63519323 63519247 ID=Msa0132450-mRNA-1:exon:21302;Parent=Msa0132450-mRNA-1
chr1_3 exon 63519449 63519520 63519449 ID=Msa0132450-mRNA-1:exon:21301;Parent=Msa0132450-mRNA-1
chr1_3 exon 63520336 63520403 63520336 ID=Msa0132450-mRNA-1:exon:21300;Parent=Msa0132450-mRNA-1
chr1_3 exon 63520729 63520874 63520729 ID=Msa0132450-mRNA-1:exon:21299;Parent=Msa0132450-mRNA-1
chr1_3 five_prime_UTR 63520729 63520874 63520729 ID=Msa0132450-mRNA-1:five_prime_utr;Parent=Msa0132450-mRNA-1
chr1_3 five_prime_UTR 63520393 63520403 63520393 ID=Msa0132450-mRNA-1:five_prime_utr;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63520336 63520392 63520336 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63519449 63519520 63519449 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63519247 63519323 63519247 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63519023 63519101 63519023 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63518606 63518729 63518606 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63517745 63517809 63517745 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63517601 63517650 63517601 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63517396 63517437 63517396 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63517258 63517309 63517258 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63517052 63517109 63517052 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63516941 63516954 63516941 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63516387 63516494 63516387 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63516167 63516310 63516167 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 CDS 63515083 63515472 63515083 ID=Msa0132450-mRNA-1:cds;Parent=Msa0132450-mRNA-1
chr1_3 three_prime_UTR 63514654 63515082 63514654 ID=Msa0132450-mRNA-1:three_prime_utr;Parent=Msa0132450-mRNA-1
Gene Sequence

>Msa0132450

ATGGCTGAACCTTCCAAGGTCATTCATGTTCGAAATGTGGGGCACGAAATATCCGAGAATGATTTACTTCAGTTATTTCAACCTTTTGGAGTCATCACAAAGCTTGTGATGTTACGTGCCAAAAATCAGGCACTTATCCAAATGCAAGACGTTCCTTCTGCAGTTAGTGCTTTACAGTTTTATGGAAACACCCAGCCAAGCATAAGGGGGCGGAATGTTTATGTCCAGTTTTCATCTCATCAAGAGCTAACAACAATAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTCTATCCCATAACAGTGGATGTACTGTATCAAGTTTTTTCTCCTCATGGATCTGTGGAGAAGATTGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACAACAGAGTTCTATTACTGCAAGAACTGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGATATTCAATTCTCAAACCTTGATGAATTACAAGTGAATTATAATAATGACCGTTCAAGAGACTTCACAAACCCAAATCTCCCTACAGAACAGAAAGGCAGGCCTCCACAACTTGGATATGGTGATGCAGGAAGCATGTATGGTGTTCAGGGTTCTGGACCCAGGGCAGTCGGATATCCACAGATGCCCAATGCTGCGGCCATTGCAGCTGCTTTTGGGGGAGGTTTACCTCCTGGAATAACTGGGACAAATGATAGGTGTACACTTCTTGTCTCAAATCTTAATCCTGATAGAATTGATGAAGACAAACTGTTCAACTTGTTCTCCCTTTATGGAAACATTGTGAGAATTAAACTTCTACGCAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCTGTACACTTTCTGAAGGGAGCCATGTTGTTTGATAAGCGACTAGAGGTCAACTTCTCGAAGCATCCAAACATAACACAAGGTGCTGACACACACGACTACAGCAACTCAAATCTCAACCGTTTTAATCGTAACGCTGCTAAAAACTACCGCTATTGCTGCTCCCCAACGAAGATGATTCATTTGTCCACACTCCCACAAGACATCACTGAAGATGAGATTGTGACCCTTCTAGAGGAGCATGGAACCATTGTCAATAGCAAAGTATTTGAGATGAATGGGAAGAAACAAGGCCTGGTTCAGTTTGAGACTGAGGATCAGGCTACTGAAGCCCTTGTATGCAAGCATGCTACCTCGCTTTCTGGCTCGGTAATTCGGATCTCCTATTCTCAATTGCAGAATATATGA

Protein sequence

>Msa0132450

MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALQFYGNTQPSIRGRNVYVQFSSHQELTTIDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGSMYGVQGSGPRAVGYPQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQATEALVCKHATSLSGSVIRISYSQLQNI*