Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132740 | AES62414.2 | 97.753 | 178 | 4 | 0 | 1 | 178 | 353 | 530 | 3.22e-115 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132740 | sp|Q9FLV4|Y5248_ARATH | 58.857 | 175 | 66 | 3 | 5 | 178 | 370 | 539 | 3.60e-58 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132740 | G7IDW1 | 97.753 | 178 | 4 | 0 | 1 | 178 | 353 | 530 | 1.54e-115 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083470 | Msa0132740 | 0.813209 | 2.873520e-51 | -8.615850e-47 |
| Msa0132740 | Msa0482730 | 0.863604 | 2.210489e-64 | -8.615850e-47 |
| Msa0132740 | Msa1441640 | 0.803425 | 3.508301e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132740 | MtrunA17_Chr1g0202331 | 97.753 | 178 | 4 | 0 | 1 | 178 | 364 | 541 | 6.12e-119 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132740 | AT5G24080.3 | 58.857 | 175 | 66 | 3 | 5 | 178 | 243 | 412 | 9.69e-60 | 198 |
| Msa0132740 | AT5G24080.1 | 58.857 | 175 | 66 | 3 | 5 | 178 | 243 | 412 | 9.69e-60 | 198 |
| Msa0132740 | AT5G24080.2 | 58.857 | 175 | 66 | 3 | 5 | 178 | 370 | 539 | 3.66e-59 | 198 |
Find 113 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGCGTTGCTTCTGTTTA+TGG | 0.107198 | 1_3:-64030495 | Msa0132740:CDS |
| CTAATCTCCGTTGGATAATT+TGG | 0.126304 | 1_3:+64031617 | None:intergenic |
| TCCAAAGTTTGGTAAGTTTC+TGG | 0.155790 | 1_3:+64031090 | None:intergenic |
| TATATCTAAAGAAGCAATTT+TGG | 0.163496 | 1_3:-64031418 | Msa0132740:five_prime_UTR |
| CGGCCAAGTTATTGCGGTTT+TGG | 0.191109 | 1_3:-64031004 | Msa0132740:five_prime_UTR |
| CATATGCTAACTATTCTTAT+TGG | 0.225057 | 1_3:-64031053 | Msa0132740:five_prime_UTR |
| CATATCGCGCTTTGCAAATC+AGG | 0.225308 | 1_3:-64030152 | Msa0132740:CDS |
| GATATAGGAGAGTTTCTAAT+TGG | 0.226855 | 1_3:+64031435 | None:intergenic |
| CCACCATGAGATGAAGATTT+TGG | 0.246452 | 1_3:+64031177 | None:intergenic |
| GAAAGTTCATTGGTCTTATC+AGG | 0.286923 | 1_3:-64030192 | Msa0132740:CDS |
| AAAATTGCTTCTTTAGATAT+AGG | 0.293497 | 1_3:+64031420 | None:intergenic |
| TGGTAATGGAGTTTGTAAAT+TGG | 0.322295 | 1_3:-64030775 | Msa0132740:five_prime_UTR |
| ACATAAACAACCACCCTATA+TGG | 0.335549 | 1_3:-64031272 | Msa0132740:five_prime_UTR |
| GTTTCAAATCCATGTGATAT+TGG | 0.351194 | 1_3:-64030807 | Msa0132740:five_prime_UTR |
| TCCAGAAACTTACCAAACTT+TGG | 0.366550 | 1_3:-64031091 | Msa0132740:five_prime_UTR |
| TCATTATCATTCTTAGCTTC+CGG | 0.373799 | 1_3:+64030975 | None:intergenic |
| CTCCTCAATACCCAACAAAA+TGG | 0.375097 | 1_3:+64030456 | None:intergenic |
| GACCTTCCATCCTGTCCTTC+CGG | 0.375203 | 1_3:+64030360 | None:intergenic |
| TATCGTTGGGAAGACGTAAA+TGG | 0.375284 | 1_3:-64030861 | Msa0132740:five_prime_UTR |
| GAAACTGTTAGAGGCTGGTT+TGG | 0.376434 | 1_3:+64031216 | None:intergenic |
| TATGAGAATTCATCTCTTGT+TGG | 0.378701 | 1_3:-64030681 | Msa0132740:five_prime_UTR |
| AATTCTGAAGAAACTGTTAG+AGG | 0.383226 | 1_3:+64031207 | None:intergenic |
| AAGAACTTTGAAAAGAGAAA+TGG | 0.385903 | 1_3:-64030214 | Msa0132740:CDS |
| CTACCAACTTTAGAAGTTCC+TGG | 0.390678 | 1_3:+64030717 | None:intergenic |
| ATTAGCATTTGAAGTGTTTG+TGG | 0.391442 | 1_3:+64031341 | None:intergenic |
| TTCCGGTGTCCATGAACTAT+TGG | 0.391534 | 1_3:+64030377 | None:intergenic |
| GTAAGTTAGTGCAAGGCTTA+AGG | 0.394651 | 1_3:+64031119 | None:intergenic |
| GTATTGAGGAGTTTAAGTTT+TGG | 0.399082 | 1_3:-64030444 | Msa0132740:CDS |
| ACAATCATTCCTAAAACAAT+TGG | 0.402754 | 1_3:+64030285 | None:intergenic |
| TCTAGTACTGTTTGTGGCAT+TGG | 0.404691 | 1_3:+64028069 | None:intergenic |
| ATCAAAGTTTAGAATTTCAA+TGG | 0.415576 | 1_3:-64030625 | Msa0132740:CDS |
| AGTCTCCGAAGAACGGTTAA+CGG | 0.422756 | 1_3:+64030915 | None:intergenic |
| GCATCTTGCACTTGTTTGCC+AGG | 0.425069 | 1_3:-64030735 | Msa0132740:five_prime_UTR |
| CTTGTTGGAAAATGTACTAA+TGG | 0.430689 | 1_3:-64030666 | Msa0132740:five_prime_UTR |
| ATTGGAGGAATTTGTGGTAA+TGG | 0.436540 | 1_3:-64030789 | Msa0132740:five_prime_UTR |
| TATAAATTAGAGCATACAAT+TGG | 0.436648 | 1_3:+64027763 | None:intergenic |
| TTCTCCCATTGGTGGTCTCA+TGG | 0.438294 | 1_3:+64028140 | None:intergenic |
| TCAGCAACCATGTCAGAATC+AGG | 0.438995 | 1_3:-64031312 | Msa0132740:five_prime_UTR |
| GAAATTTGAGGTTATATCGT+TGG | 0.441793 | 1_3:-64030875 | Msa0132740:five_prime_UTR |
| TGATAATGATGATGCAGGTT+TGG | 0.447690 | 1_3:-64030961 | Msa0132740:five_prime_UTR |
| CTGAAGAAACTGTTAGAGGC+TGG | 0.453960 | 1_3:+64031211 | None:intergenic |
| AAGAGAAATGGAAAGTTCAT+TGG | 0.454873 | 1_3:-64030202 | Msa0132740:CDS |
| CCTGAGATTTCCAATGTAAC+CGG | 0.455323 | 1_3:-64031024 | Msa0132740:five_prime_UTR |
| AATAGTTCGTCTGATGGAAT+GGG | 0.456146 | 1_3:-64030336 | Msa0132740:CDS |
| GTGGCAGATAGAAGCTTAAA+CGG | 0.460444 | 1_3:-64028231 | Msa0132740:exon |
| ATTAACTCTAGTACTGTTTG+TGG | 0.460851 | 1_3:+64028063 | None:intergenic |
| TGAAGTGTTTGTGGCCCATA+TGG | 0.461705 | 1_3:+64031350 | None:intergenic |
| TAATAGTTCGTCTGATGGAA+TGG | 0.464781 | 1_3:-64030337 | Msa0132740:CDS |
| AGGTTAGAGCCAATAGTTCA+TGG | 0.466113 | 1_3:-64030386 | Msa0132740:CDS |
| CCGGTTACATTGGAAATCTC+AGG | 0.467602 | 1_3:+64031024 | None:intergenic |
| AGTACTGTTTGTGGCATTGG+TGG | 0.475028 | 1_3:+64028072 | None:intergenic |
| AAATTTGAGGTTATATCGTT+GGG | 0.476004 | 1_3:-64030874 | Msa0132740:five_prime_UTR |
| CTAAGCCGTTAACCGTTCTT+CGG | 0.476205 | 1_3:-64030920 | Msa0132740:five_prime_UTR |
| GATCCAAAACCGCAATAACT+TGG | 0.476805 | 1_3:+64031001 | None:intergenic |
| TTTGGAAGGAGTGTGTTAGA+AGG | 0.482167 | 1_3:+64031234 | None:intergenic |
| TTCTGTTTATGGACTAAATG+AGG | 0.486123 | 1_3:-64030484 | Msa0132740:CDS |
| CTGTTAGAGGCTGGTTTGGA+AGG | 0.487567 | 1_3:+64031220 | None:intergenic |
| AGTGCAAGGCTTAAGGAAGT+TGG | 0.488094 | 1_3:+64031126 | None:intergenic |
| GAAACAATGGGTGACACAAT+GGG | 0.489853 | 1_3:-64030835 | Msa0132740:five_prime_UTR |
| TGTGATATTGGAGGAATTTG+TGG | 0.491228 | 1_3:-64030795 | Msa0132740:five_prime_UTR |
| TTATTATAGGAGATGACAAA+TGG | 0.494552 | 1_3:-64028267 | Msa0132740:intron |
| TTCATGGACACCGGAAGGAC+AGG | 0.501090 | 1_3:-64030370 | Msa0132740:CDS |
| GCGCGATATGTAAAATTCAC+TGG | 0.501698 | 1_3:+64030165 | None:intergenic |
| ATCATCTTGTATGCACCAAA+AGG | 0.506963 | 1_3:+64028167 | None:intergenic |
| TCTCCGTTGGATAATTTGGC+TGG | 0.511262 | 1_3:+64031621 | None:intergenic |
| ACTTCTAAAGTTGGTAGAGA+TGG | 0.511359 | 1_3:-64030711 | Msa0132740:five_prime_UTR |
| TTGCCAGGAACTTCTAAAGT+TGG | 0.519401 | 1_3:-64030720 | Msa0132740:five_prime_UTR |
| AGAGTTAATTGAGGAAGGGT+TGG | 0.522660 | 1_3:-64028049 | Msa0132740:three_prime_UTR |
| CGAAACAATGGGTGACACAA+TGG | 0.524322 | 1_3:-64030836 | Msa0132740:five_prime_UTR |
| GGTGGTTGTTTATGTTGTGA+AGG | 0.526421 | 1_3:+64031280 | None:intergenic |
| CTCACCACTTCTCCCATTGG+TGG | 0.527543 | 1_3:+64028132 | None:intergenic |
| GTACTAGAGTTAATTGAGGA+AGG | 0.529556 | 1_3:-64028054 | Msa0132740:three_prime_UTR |
| ACGTAAATGGATCGAAACAA+TGG | 0.535811 | 1_3:-64030848 | Msa0132740:five_prime_UTR |
| AAGAATGATAATGATGATGC+AGG | 0.538756 | 1_3:-64030966 | Msa0132740:five_prime_UTR |
| AATAACTTGGCCGGTTACAT+TGG | 0.541303 | 1_3:+64031014 | None:intergenic |
| TGTCGATGACTAATCTCCGT+TGG | 0.542845 | 1_3:+64031608 | None:intergenic |
| GCTAACTATTCTTATTGGCA+AGG | 0.543777 | 1_3:-64031048 | Msa0132740:five_prime_UTR |
| AAGTTCTACTTTGTTTGTGA+AGG | 0.549614 | 1_3:-64030406 | Msa0132740:CDS |
| GAGTGTTAGTCTCCGAAGAA+CGG | 0.554635 | 1_3:+64030908 | None:intergenic |
| AATCTCACCACTTCTCCCAT+TGG | 0.555772 | 1_3:+64028129 | None:intergenic |
| CGTAAATGGATCGAAACAAT+GGG | 0.556068 | 1_3:-64030847 | Msa0132740:five_prime_UTR |
| CAAAACCGCAATAACTTGGC+CGG | 0.556292 | 1_3:+64031005 | None:intergenic |
| TCAAATCCATGTGATATTGG+AGG | 0.560629 | 1_3:-64030804 | Msa0132740:five_prime_UTR |
| TGTTTCCATGAGACCACCAA+TGG | 0.560849 | 1_3:-64028145 | Msa0132740:three_prime_UTR |
| TCACCAAAATCTTCATCTCA+TGG | 0.563558 | 1_3:-64031180 | Msa0132740:five_prime_UTR |
| AGGTCTAATAGTTCGTCTGA+TGG | 0.564214 | 1_3:-64030342 | Msa0132740:CDS |
| TAATGGTGAATGAACTATAG+TGG | 0.564330 | 1_3:+64027992 | None:intergenic |
| TGATGGAATGGGGAGTGCTA+AGG | 0.565147 | 1_3:-64030325 | Msa0132740:CDS |
| GAAGATTGTAAGTTAGTGCA+AGG | 0.565458 | 1_3:+64031112 | None:intergenic |
| TCGAAGAGAACGGAAATTTG+AGG | 0.566827 | 1_3:-64030887 | Msa0132740:five_prime_UTR |
| TTACTATCTTGGTGACATTG+TGG | 0.577686 | 1_3:+64027933 | None:intergenic |
| TACTAGAGTTAATTGAGGAA+GGG | 0.579187 | 1_3:-64028053 | Msa0132740:three_prime_UTR |
| CACCGGAAGGACAGGATGGA+AGG | 0.579853 | 1_3:-64030362 | Msa0132740:CDS |
| GAGACCACCAATGGGAGAAG+TGG | 0.583206 | 1_3:-64028136 | Msa0132740:three_prime_UTR |
| AACAGTACTAGAGTTAATTG+AGG | 0.583430 | 1_3:-64028058 | Msa0132740:three_prime_UTR |
| GTTTCTTCTTTATCAAAATG+CGG | 0.584927 | 1_3:-64030540 | Msa0132740:CDS |
| AGATGTAAGATGACTGGTAA+TGG | 0.587337 | 1_3:+64027975 | None:intergenic |
| TGTAACCGGCCAAGTTATTG+CGG | 0.588256 | 1_3:-64031010 | Msa0132740:five_prime_UTR |
| GTTTCCATGAGACCACCAAT+GGG | 0.590828 | 1_3:-64028144 | Msa0132740:three_prime_UTR |
| GGTCATCTTTAATAGAGTAG+TGG | 0.606982 | 1_3:+64031642 | None:intergenic |
| GAAGTGGTGAGATTACTTGA+AGG | 0.609019 | 1_3:-64028120 | Msa0132740:three_prime_UTR |
| CAAATTCCTCCAATATCACA+TGG | 0.609451 | 1_3:+64030798 | None:intergenic |
| AGCCAATAGTTCATGGACAC+CGG | 0.614174 | 1_3:-64030379 | Msa0132740:CDS |
| AATGGGGAGTGCTAAGGAGA+AGG | 0.615191 | 1_3:-64030319 | Msa0132740:CDS |
| AATAGTTCATGGACACCGGA+AGG | 0.620546 | 1_3:-64030375 | Msa0132740:CDS |
| TGCATGAGATGTAAGATGAC+TGG | 0.623779 | 1_3:+64027969 | None:intergenic |
| AGACTAACACTCGAAGAGAA+CGG | 0.628286 | 1_3:-64030897 | Msa0132740:five_prime_UTR |
| TGGACACCGGAAGGACAGGA+TGG | 0.629165 | 1_3:-64030366 | Msa0132740:CDS |
| GAAGTTGCCTGATTCTGACA+TGG | 0.651458 | 1_3:+64031305 | None:intergenic |
| ATAGTTCGTCTGATGGAATG+GGG | 0.659002 | 1_3:-64030335 | Msa0132740:CDS |
| TGACCAGCCAAATTATCCAA+CGG | 0.669955 | 1_3:-64031624 | Msa0132740:five_prime_UTR |
| CCAAAATCTTCATCTCATGG+TGG | 0.689250 | 1_3:-64031177 | Msa0132740:five_prime_UTR |
| AAATGGATCAGCAATCAAAG+TGG | 0.692037 | 1_3:-64028250 | Msa0132740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTATTATAATTTTGTT+AGG | - | chr1_3:64029503-64029522 | Msa0132740:intron | 10.0% |
| !!! | TTATTTTGGTTTTAAAATAT+GGG | - | chr1_3:64029540-64029559 | Msa0132740:intron | 10.0% |
| !!! | TATTGAATTTTATAGTAAAG+AGG | - | chr1_3:64029286-64029305 | Msa0132740:intron | 15.0% |
| !!! | GTTATTTTGGTTTTAAAATA+TGG | - | chr1_3:64029539-64029558 | Msa0132740:intron | 15.0% |
| !!! | TATTTTGGTTTTAAAATATG+GGG | - | chr1_3:64029541-64029560 | Msa0132740:intron | 15.0% |
| !!! | TAACAATCTATATATTTTGT+AGG | - | chr1_3:64029771-64029790 | Msa0132740:intron | 15.0% |
| !! | AAAATTGCTTCTTTAGATAT+AGG | + | chr1_3:64027953-64027972 | None:intergenic | 20.0% |
| !!! | TATATCTAAAGAAGCAATTT+TGG | - | chr1_3:64027952-64027971 | Msa0132740:three_prime_UTR | 20.0% |
| !!! | TTTTTTTGTCTATGAGAATA+AGG | + | chr1_3:64027997-64028016 | None:intergenic | 20.0% |
| !!! | ATCAAAGTTTAGAATTTCAA+TGG | - | chr1_3:64028745-64028764 | Msa0132740:intron | 20.0% |
| !! | TAACAACTAAACTTAACATA+AGG | + | chr1_3:64029403-64029422 | None:intergenic | 20.0% |
| !!! | CTAACTGTTATAATTTTGTT+CGG | + | chr1_3:64029589-64029608 | None:intergenic | 20.0% |
| !! | TAAAATCTCAATGGTTTAAT+TGG | - | chr1_3:64030058-64030077 | Msa0132740:intron | 20.0% |
| !!! | TCATCTAACAATATATTTTC+TGG | + | chr1_3:64030288-64030307 | None:intergenic | 20.0% |
| !! | TTTATAGTATATCAGCATTT+CGG | - | chr1_3:64030577-64030596 | Msa0132740:CDS | 20.0% |
| !!! | ATTGATGGTCTTTAATTTAA+GGG | + | chr1_3:64030668-64030687 | None:intergenic | 20.0% |
| !!! | TCAATATGTAGATTTTTCAT+TGG | + | chr1_3:64030739-64030758 | None:intergenic | 20.0% |
| !!! | ACCTAAAACATTTAAAATTG+TGG | - | chr1_3:64030827-64030846 | Msa0132740:five_prime_UTR | 20.0% |
| !!! | ACCACAATTTTAAATGTTTT+AGG | + | chr1_3:64030831-64030850 | None:intergenic | 20.0% |
| !! | GTTATTAAAACTGTAAATGT+CGG | + | chr1_3:64030943-64030962 | None:intergenic | 20.0% |
| !! | AATAAAATGCTAGAATAGAA+AGG | + | chr1_3:64031002-64031021 | None:intergenic | 20.0% |
| !!! | AAATGAGTTTTATTTTTGGA+TGG | + | chr1_3:64031486-64031505 | None:intergenic | 20.0% |
| !!! | GACAAAATGAGTTTTATTTT+TGG | + | chr1_3:64031490-64031509 | None:intergenic | 20.0% |
| !! | TATAAATTAGAGCATACAAT+TGG | + | chr1_3:64031610-64031629 | None:intergenic | 20.0% |
| ! | TAGACAAAAAAATCACCATA+TGG | - | chr1_3:64028005-64028024 | Msa0132740:three_prime_UTR | 25.0% |
| ! | AGACAAAAAAATCACCATAT+GGG | - | chr1_3:64028006-64028025 | Msa0132740:three_prime_UTR | 25.0% |
| !! | ATTCATTTTCATCCAAAGTT+TGG | + | chr1_3:64028294-64028313 | None:intergenic | 25.0% |
| ! | CATATGCTAACTATTCTTAT+TGG | - | chr1_3:64028317-64028336 | Msa0132740:intron | 25.0% |
| !! | AAATTTGAGGTTATATCGTT+GGG | - | chr1_3:64028496-64028515 | Msa0132740:intron | 25.0% |
| !! | TTGATGTCATGTTTTCATTT+TGG | + | chr1_3:64028730-64028749 | None:intergenic | 25.0% |
| ! | GTTTCTTCTTTATCAAAATG+CGG | - | chr1_3:64028830-64028849 | Msa0132740:intron | 25.0% |
| !! | GTGATTATTCCAATTGTTTT+AGG | - | chr1_3:64029076-64029095 | Msa0132740:intron | 25.0% |
| ! | ACAATCATTCCTAAAACAAT+TGG | + | chr1_3:64029088-64029107 | None:intergenic | 25.0% |
| !! | AAGAACTTTGAAAAGAGAAA+TGG | - | chr1_3:64029156-64029175 | Msa0132740:intron | 25.0% |
| !! | GAATTTTATAGTAAAGAGGA+AGG | - | chr1_3:64029290-64029309 | Msa0132740:intron | 25.0% |
| !!! | ATCTCTGAAATTGTAACTAT+CGG | - | chr1_3:64029330-64029349 | Msa0132740:intron | 25.0% |
| !! | ATTTTGTTAGGATAATGCAT+AGG | - | chr1_3:64029515-64029534 | Msa0132740:intron | 25.0% |
| !! | ATAATGCATAGGAGTTATTT+TGG | - | chr1_3:64029526-64029545 | Msa0132740:intron | 25.0% |
| !!! | ATAACAGTTAGTTTTGTATG+TGG | - | chr1_3:64029598-64029617 | Msa0132740:intron | 25.0% |
| !! | CAATCTATATATTTTGTAGG+TGG | - | chr1_3:64029774-64029793 | Msa0132740:intron | 25.0% |
| !!! | ATATATTTTGTAGGTGGATT+TGG | - | chr1_3:64029780-64029799 | Msa0132740:intron | 25.0% |
| ! | TTGAGCAATATTTGTTTGAT+AGG | - | chr1_3:64030082-64030101 | Msa0132740:intron | 25.0% |
| !!! | ATGCTTCTTTTAGAAATCAT+TGG | - | chr1_3:64030468-64030487 | Msa0132740:CDS | 25.0% |
| !! | GATTGATGGTCTTTAATTTA+AGG | + | chr1_3:64030669-64030688 | None:intergenic | 25.0% |
| !! | TTTAGGACTAAATTGATTGA+TGG | + | chr1_3:64030683-64030702 | None:intergenic | 25.0% |
| !!! | CTATAGAGATGTTTTGATTT+AGG | + | chr1_3:64030700-64030719 | None:intergenic | 25.0% |
| ! | ATCATGTTGTTCAATTTAAG+AGG | - | chr1_3:64030879-64030898 | Msa0132740:five_prime_UTR | 25.0% |
| ! | TGTATATGTCTAATGTTTCT+AGG | + | chr1_3:64031038-64031057 | None:intergenic | 25.0% |
| !!! | TCATATCAGTATTTTTCAAG+TGG | + | chr1_3:64031068-64031087 | None:intergenic | 25.0% |
| ! | TGATATGATAGCATAATGTT+TGG | - | chr1_3:64031080-64031099 | Msa0132740:five_prime_UTR | 25.0% |
| ! | GCATAATGTTTGGTTATTAT+AGG | - | chr1_3:64031090-64031109 | Msa0132740:five_prime_UTR | 25.0% |
| ! | TTATTATAGGAGATGACAAA+TGG | - | chr1_3:64031103-64031122 | Msa0132740:five_prime_UTR | 25.0% |
| !!! | ATTCTTAGCTTTTACTATCT+TGG | + | chr1_3:64031451-64031470 | None:intergenic | 25.0% |
| GATATAGGAGAGTTTCTAAT+TGG | + | chr1_3:64027938-64027957 | None:intergenic | 30.0% | |
| ! | ATTAGCATTTGAAGTGTTTG+TGG | + | chr1_3:64028032-64028051 | None:intergenic | 30.0% |
| ! | AATTCTGAAGAAACTGTTAG+AGG | + | chr1_3:64028166-64028185 | None:intergenic | 30.0% |
| TCATTATCATTCTTAGCTTC+CGG | + | chr1_3:64028398-64028417 | None:intergenic | 30.0% | |
| ! | AAGAATGATAATGATGATGC+AGG | - | chr1_3:64028404-64028423 | Msa0132740:intron | 30.0% |
| ! | GAAATTTGAGGTTATATCGT+TGG | - | chr1_3:64028495-64028514 | Msa0132740:intron | 30.0% |
| GTTTCAAATCCATGTGATAT+TGG | - | chr1_3:64028563-64028582 | Msa0132740:intron | 30.0% | |
| !! | TGGTAATGGAGTTTGTAAAT+TGG | - | chr1_3:64028595-64028614 | Msa0132740:intron | 30.0% |
| TATGAGAATTCATCTCTTGT+TGG | - | chr1_3:64028689-64028708 | Msa0132740:intron | 30.0% | |
| CTTGTTGGAAAATGTACTAA+TGG | - | chr1_3:64028704-64028723 | Msa0132740:intron | 30.0% | |
| ! | TTCTGTTTATGGACTAAATG+AGG | - | chr1_3:64028886-64028905 | Msa0132740:intron | 30.0% |
| !! | GTATTGAGGAGTTTAAGTTT+TGG | - | chr1_3:64028926-64028945 | Msa0132740:intron | 30.0% |
| ! | AAGTTCTACTTTGTTTGTGA+AGG | - | chr1_3:64028964-64028983 | Msa0132740:intron | 30.0% |
| AAGAGAAATGGAAAGTTCAT+TGG | - | chr1_3:64029168-64029187 | Msa0132740:intron | 30.0% | |
| AATAAACAAGTTTGTCCATG+AGG | + | chr1_3:64029492-64029511 | None:intergenic | 30.0% | |
| ATAAATTCTTTCTCTCCATG+AGG | + | chr1_3:64029873-64029892 | None:intergenic | 30.0% | |
| ATCACTGAAGTAAACACAAT+TGG | - | chr1_3:64029891-64029910 | Msa0132740:intron | 30.0% | |
| CATAAGACGTAAAATCTCAA+TGG | - | chr1_3:64030049-64030068 | Msa0132740:intron | 30.0% | |
| ATATTTGTTTGATAGGCTTC+TGG | - | chr1_3:64030089-64030108 | Msa0132740:intron | 30.0% | |
| AGAACAGTTCATTGGATAAA+TGG | - | chr1_3:64030127-64030146 | Msa0132740:CDS | 30.0% | |
| ! | AGATGAAAACTTTTGTCCTA+AGG | - | chr1_3:64030302-64030321 | Msa0132740:CDS | 30.0% |
| !! | ACATCTGCTTTTACAGTTAT+AGG | + | chr1_3:64030435-64030454 | None:intergenic | 30.0% |
| !! | CTTCTTTTAGAAATCATTGG+TGG | - | chr1_3:64030471-64030490 | Msa0132740:CDS | 30.0% |
| !! | TTTTAGAAATCATTGGTGGT+AGG | - | chr1_3:64030475-64030494 | Msa0132740:CDS | 30.0% |
| AACAACATGATTCAACTTAG+TGG | + | chr1_3:64030870-64030889 | None:intergenic | 30.0% | |
| !!! | GTAAATTTTGAAGCCCAAAT+TGG | - | chr1_3:64030917-64030936 | Msa0132740:five_prime_UTR | 30.0% |
| !! | ATATGTCTAATGTTTCTAGG+AGG | + | chr1_3:64031035-64031054 | None:intergenic | 30.0% |
| !!! | ATCAGTATTTTTCAAGTGGT+TGG | + | chr1_3:64031064-64031083 | None:intergenic | 30.0% |
| !!! | GAGCTTTAAAAATTGCCTTT+TGG | - | chr1_3:64031188-64031207 | Msa0132740:five_prime_UTR | 30.0% |
| ATTAACTCTAGTACTGTTTG+TGG | + | chr1_3:64031310-64031329 | None:intergenic | 30.0% | |
| AACAGTACTAGAGTTAATTG+AGG | - | chr1_3:64031312-64031331 | Msa0132740:five_prime_UTR | 30.0% | |
| TACTAGAGTTAATTGAGGAA+GGG | - | chr1_3:64031317-64031336 | Msa0132740:five_prime_UTR | 30.0% | |
| !!! | TTTTCATAGCTTTGTAGACA+TGG | + | chr1_3:64031348-64031367 | None:intergenic | 30.0% |
| TAATGGTGAATGAACTATAG+TGG | + | chr1_3:64031381-64031400 | None:intergenic | 30.0% | |
| GGTCATCTTTAATAGAGTAG+TGG | + | chr1_3:64027731-64027750 | None:intergenic | 35.0% | |
| CTAATCTCCGTTGGATAATT+TGG | + | chr1_3:64027756-64027775 | None:intergenic | 35.0% | |
| ACATAAACAACCACCCTATA+TGG | - | chr1_3:64028098-64028117 | Msa0132740:three_prime_UTR | 35.0% | |
| GAGAAAAACTCTGCCATATA+GGG | + | chr1_3:64028114-64028133 | None:intergenic | 35.0% | |
| TGAGAAAAACTCTGCCATAT+AGG | + | chr1_3:64028115-64028134 | None:intergenic | 35.0% | |
| TCACCAAAATCTTCATCTCA+TGG | - | chr1_3:64028190-64028209 | Msa0132740:three_prime_UTR | 35.0% | |
| GAAGATTGTAAGTTAGTGCA+AGG | + | chr1_3:64028261-64028280 | None:intergenic | 35.0% | |
| TCCAGAAACTTACCAAACTT+TGG | - | chr1_3:64028279-64028298 | Msa0132740:intron | 35.0% | |
| TCCAAAGTTTGGTAAGTTTC+TGG | + | chr1_3:64028283-64028302 | None:intergenic | 35.0% | |
| GCTAACTATTCTTATTGGCA+AGG | - | chr1_3:64028322-64028341 | Msa0132740:intron | 35.0% | |
| ! | TGATAATGATGATGCAGGTT+TGG | - | chr1_3:64028409-64028428 | Msa0132740:intron | 35.0% |
| ACGTAAATGGATCGAAACAA+TGG | - | chr1_3:64028522-64028541 | Msa0132740:intron | 35.0% | |
| CGTAAATGGATCGAAACAAT+GGG | - | chr1_3:64028523-64028542 | Msa0132740:intron | 35.0% | |
| TCAAATCCATGTGATATTGG+AGG | - | chr1_3:64028566-64028585 | Msa0132740:intron | 35.0% | |
| CAAATTCCTCCAATATCACA+TGG | + | chr1_3:64028575-64028594 | None:intergenic | 35.0% | |
| TGTGATATTGGAGGAATTTG+TGG | - | chr1_3:64028575-64028594 | Msa0132740:intron | 35.0% | |
| ATTGGAGGAATTTGTGGTAA+TGG | - | chr1_3:64028581-64028600 | Msa0132740:intron | 35.0% | |
| !! | ACTTCTAAAGTTGGTAGAGA+TGG | - | chr1_3:64028659-64028678 | Msa0132740:intron | 35.0% |
| !! | TTGAGGAGTTTAAGTTTTGG+TGG | - | chr1_3:64028929-64028948 | Msa0132740:intron | 35.0% |
| TAATAGTTCGTCTGATGGAA+TGG | - | chr1_3:64029033-64029052 | Msa0132740:intron | 35.0% | |
| AATAGTTCGTCTGATGGAAT+GGG | - | chr1_3:64029034-64029053 | Msa0132740:intron | 35.0% | |
| !! | GAAAGTTCATTGGTCTTATC+AGG | - | chr1_3:64029178-64029197 | Msa0132740:intron | 35.0% |
| ! | AGTAACTTTTCGCAACTTCT+AGG | - | chr1_3:64029244-64029263 | Msa0132740:intron | 35.0% |
| TTAACATAAGGACCACCATA+GGG | + | chr1_3:64029391-64029410 | None:intergenic | 35.0% | |
| AGTTGTTACACAGAATGATG+TGG | - | chr1_3:64029415-64029434 | Msa0132740:intron | 35.0% | |
| !! | ATTTTGATGTGAAGTCCAAG+TGG | - | chr1_3:64029628-64029647 | Msa0132740:intron | 35.0% |
| TGTCCAATGACTGAACTTAA+TGG | - | chr1_3:64029686-64029705 | Msa0132740:intron | 35.0% | |
| CATCCATTAAGTTCAGTCAT+TGG | + | chr1_3:64029692-64029711 | None:intergenic | 35.0% | |
| !!! | TGTTTTGATTGATGTGTCAC+AGG | - | chr1_3:64029715-64029734 | Msa0132740:intron | 35.0% |
| !!! | GTTTTGATTGATGTGTCACA+GGG | - | chr1_3:64029716-64029735 | Msa0132740:intron | 35.0% |
| ! | GGATTTGGAAGTGTGTATAA+AGG | - | chr1_3:64029795-64029814 | Msa0132740:intron | 35.0% |
| CGCTATGCATCATATGAATT+TGG | - | chr1_3:64029914-64029933 | Msa0132740:intron | 35.0% | |
| ! | ATGAATTTGGTTCGTCTATG+CGG | - | chr1_3:64029927-64029946 | Msa0132740:intron | 35.0% |
| AAATATAGTACACACCTGTG+TGG | + | chr1_3:64029969-64029988 | None:intergenic | 35.0% | |
| GTTCATGAAGAACAGTTCAT+TGG | - | chr1_3:64030119-64030138 | Msa0132740:intron | 35.0% | |
| TATAGCCATAAATACTGCAC+AGG | - | chr1_3:64030206-64030225 | Msa0132740:CDS | 35.0% | |
| ATAGCCATAAATACTGCACA+GGG | - | chr1_3:64030207-64030226 | Msa0132740:CDS | 35.0% | |
| TTCATGAGCAATGCAGAAAT+AGG | - | chr1_3:64030241-64030260 | Msa0132740:CDS | 35.0% | |
| !! | TGTCCTAAGGTATCTGATTT+TGG | - | chr1_3:64030315-64030334 | Msa0132740:CDS | 35.0% |
| AGTCCAAAATCAGATACCTT+AGG | + | chr1_3:64030321-64030340 | None:intergenic | 35.0% | |
| !! | TAAGGTATCTGATTTTGGAC+TGG | - | chr1_3:64030320-64030339 | Msa0132740:CDS | 35.0% |
| AAAGCAGATGTTTACAGCTA+TGG | - | chr1_3:64030444-64030463 | Msa0132740:CDS | 35.0% | |
| ACAATTACAACTACGATCCT+AGG | + | chr1_3:64030603-64030622 | None:intergenic | 35.0% | |
| AAATGGATCAGCAATCAAAG+TGG | - | chr1_3:64031120-64031139 | Msa0132740:five_prime_UTR | 35.0% | |
| ATCATCTTGTATGCACCAAA+AGG | + | chr1_3:64031206-64031225 | None:intergenic | 35.0% | |
| GTACTAGAGTTAATTGAGGA+AGG | - | chr1_3:64031316-64031335 | Msa0132740:five_prime_UTR | 35.0% | |
| AGATGTAAGATGACTGGTAA+TGG | + | chr1_3:64031398-64031417 | None:intergenic | 35.0% | |
| ! | TTACTATCTTGGTGACATTG+TGG | + | chr1_3:64031440-64031459 | None:intergenic | 35.0% |
| TGACCAGCCAAATTATCCAA+CGG | - | chr1_3:64027746-64027765 | Msa0132740:three_prime_UTR | 40.0% | |
| !!! | ATTTTGGAGCTTGACACAAC+AGG | - | chr1_3:64027968-64027987 | Msa0132740:three_prime_UTR | 40.0% |
| GGTGGTTGTTTATGTTGTGA+AGG | + | chr1_3:64028093-64028112 | None:intergenic | 40.0% | |
| AAAAACTCTGCCATATAGGG+TGG | + | chr1_3:64028111-64028130 | None:intergenic | 40.0% | |
| ! | TTTGGAAGGAGTGTGTTAGA+AGG | + | chr1_3:64028139-64028158 | None:intergenic | 40.0% |
| ! | CCACCATGAGATGAAGATTT+TGG | + | chr1_3:64028196-64028215 | None:intergenic | 40.0% |
| CCAAAATCTTCATCTCATGG+TGG | - | chr1_3:64028193-64028212 | Msa0132740:three_prime_UTR | 40.0% | |
| GTAAGTTAGTGCAAGGCTTA+AGG | + | chr1_3:64028254-64028273 | None:intergenic | 40.0% | |
| CCTGAGATTTCCAATGTAAC+CGG | - | chr1_3:64028346-64028365 | Msa0132740:intron | 40.0% | |
| AATAACTTGGCCGGTTACAT+TGG | + | chr1_3:64028359-64028378 | None:intergenic | 40.0% | |
| GATCCAAAACCGCAATAACT+TGG | + | chr1_3:64028372-64028391 | None:intergenic | 40.0% | |
| AGACTAACACTCGAAGAGAA+CGG | - | chr1_3:64028473-64028492 | Msa0132740:intron | 40.0% | |
| TCGAAGAGAACGGAAATTTG+AGG | - | chr1_3:64028483-64028502 | Msa0132740:intron | 40.0% | |
| TATCGTTGGGAAGACGTAAA+TGG | - | chr1_3:64028509-64028528 | Msa0132740:intron | 40.0% | |
| GAAACAATGGGTGACACAAT+GGG | - | chr1_3:64028535-64028554 | Msa0132740:intron | 40.0% | |
| !! | TTGCCAGGAACTTCTAAAGT+TGG | - | chr1_3:64028650-64028669 | Msa0132740:intron | 40.0% |
| ! | CTACCAACTTTAGAAGTTCC+TGG | + | chr1_3:64028656-64028675 | None:intergenic | 40.0% |
| GATTGCGTTGCTTCTGTTTA+TGG | - | chr1_3:64028875-64028894 | Msa0132740:intron | 40.0% | |
| ! | ATGAGGAGAGACCATTTTGT+TGG | - | chr1_3:64028903-64028922 | Msa0132740:intron | 40.0% |
| ! | TGAGGAGAGACCATTTTGTT+GGG | - | chr1_3:64028904-64028923 | Msa0132740:intron | 40.0% |
| !! | GACCATTTTGTTGGGTATTG+AGG | - | chr1_3:64028912-64028931 | Msa0132740:intron | 40.0% |
| CTCCTCAATACCCAACAAAA+TGG | + | chr1_3:64028917-64028936 | None:intergenic | 40.0% | |
| AGGTTAGAGCCAATAGTTCA+TGG | - | chr1_3:64028984-64029003 | Msa0132740:intron | 40.0% | |
| AGGTCTAATAGTTCGTCTGA+TGG | - | chr1_3:64029028-64029047 | Msa0132740:intron | 40.0% | |
| ATAGTTCGTCTGATGGAATG+GGG | - | chr1_3:64029035-64029054 | Msa0132740:intron | 40.0% | |
| GCGCGATATGTAAAATTCAC+TGG | + | chr1_3:64029208-64029227 | None:intergenic | 40.0% | |
| !! | TTTTCGCAACTTCTAGGAAC+AGG | - | chr1_3:64029250-64029269 | Msa0132740:intron | 40.0% |
| GTAAAGAGGAAGGAGTGAAT+AGG | - | chr1_3:64029300-64029319 | Msa0132740:intron | 40.0% | |
| ! | TTGTCTCTGATTTTACGCAC+CGG | - | chr1_3:64029359-64029378 | Msa0132740:intron | 40.0% |
| CTTAACATAAGGACCACCAT+AGG | + | chr1_3:64029392-64029411 | None:intergenic | 40.0% | |
| TGAAGATGTTGTAGTTCACG+TGG | - | chr1_3:64029446-64029465 | Msa0132740:intron | 40.0% | |
| TATGGGGAAGAGTGACATTT+AGG | - | chr1_3:64029557-64029576 | Msa0132740:intron | 40.0% | |
| AGTGTGTATAAAGGAAGCCT+AGG | - | chr1_3:64029804-64029823 | Msa0132740:intron | 40.0% | |
| TATAAAGGAAGCCTAGGAGA+TGG | - | chr1_3:64029810-64029829 | Msa0132740:intron | 40.0% | |
| ! | CAATTAGAGTACCATCTCCT+AGG | + | chr1_3:64029824-64029843 | None:intergenic | 40.0% |
| ! | CTTGACAAGATTTTGCCTCA+TGG | - | chr1_3:64029855-64029874 | Msa0132740:intron | 40.0% |
| CAAGCAATATTCGCTTGATC+AGG | + | chr1_3:64030011-64030030 | None:intergenic | 40.0% | |
| TAGCCATAAATACTGCACAG+GGG | - | chr1_3:64030208-64030227 | Msa0132740:CDS | 40.0% | |
| AATCCCCTGTGCAGTATTTA+TGG | + | chr1_3:64030214-64030233 | None:intergenic | 40.0% | |
| !!! | TTTTGGACTGGCCAAATTGA+TGG | - | chr1_3:64030332-64030351 | Msa0132740:CDS | 40.0% |
| TCACTCTCAAGTGGTAACAA+TGG | - | chr1_3:64030362-64030381 | Msa0132740:CDS | 40.0% | |
| CAAGTGGTAACAATGGTTAG+AGG | - | chr1_3:64030369-64030388 | Msa0132740:CDS | 40.0% | |
| !! | ACAATGGTTAGAGGTACTAG+AGG | - | chr1_3:64030378-64030397 | Msa0132740:CDS | 40.0% |
| AGGTTATTTAGCGCCTGAAT+GGG | - | chr1_3:64030398-64030417 | Msa0132740:CDS | 40.0% | |
| GAAGAAGTCTTCTGCATCAA+AGG | + | chr1_3:64030517-64030536 | None:intergenic | 40.0% | |
| AAGACTTCTTCTATCCTGGT+TGG | - | chr1_3:64030526-64030545 | Msa0132740:CDS | 40.0% | |
| AGACTTCTTCTATCCTGGTT+GGG | - | chr1_3:64030527-64030546 | Msa0132740:CDS | 40.0% | |
| CTGTAAATGTCGGCCAATTT+GGG | + | chr1_3:64030933-64030952 | None:intergenic | 40.0% | |
| ACTGTAAATGTCGGCCAATT+TGG | + | chr1_3:64030934-64030953 | None:intergenic | 40.0% | |
| GTGGCAGATAGAAGCTTAAA+CGG | - | chr1_3:64031139-64031158 | Msa0132740:five_prime_UTR | 40.0% | |
| GAAGTGGTGAGATTACTTGA+AGG | - | chr1_3:64031250-64031269 | Msa0132740:five_prime_UTR | 40.0% | |
| TCTAGTACTGTTTGTGGCAT+TGG | + | chr1_3:64031304-64031323 | None:intergenic | 40.0% | |
| AGAGTTAATTGAGGAAGGGT+TGG | - | chr1_3:64031321-64031340 | Msa0132740:five_prime_UTR | 40.0% | |
| TGCATGAGATGTAAGATGAC+TGG | + | chr1_3:64031404-64031423 | None:intergenic | 40.0% | |
| TCTCCGTTGGATAATTTGGC+TGG | + | chr1_3:64027752-64027771 | None:intergenic | 45.0% | |
| TGTCGATGACTAATCTCCGT+TGG | + | chr1_3:64027765-64027784 | None:intergenic | 45.0% | |
| ! | TGAAGTGTTTGTGGCCCATA+TGG | + | chr1_3:64028023-64028042 | None:intergenic | 45.0% |
| TCAGCAACCATGTCAGAATC+AGG | - | chr1_3:64028058-64028077 | Msa0132740:three_prime_UTR | 45.0% | |
| GAAGTTGCCTGATTCTGACA+TGG | + | chr1_3:64028068-64028087 | None:intergenic | 45.0% | |
| ! | GAAACTGTTAGAGGCTGGTT+TGG | + | chr1_3:64028157-64028176 | None:intergenic | 45.0% |
| CTGAAGAAACTGTTAGAGGC+TGG | + | chr1_3:64028162-64028181 | None:intergenic | 45.0% | |
| AGTGCAAGGCTTAAGGAAGT+TGG | + | chr1_3:64028247-64028266 | None:intergenic | 45.0% | |
| CCGGTTACATTGGAAATCTC+AGG | + | chr1_3:64028349-64028368 | None:intergenic | 45.0% | |
| TGTAACCGGCCAAGTTATTG+CGG | - | chr1_3:64028360-64028379 | Msa0132740:intron | 45.0% | |
| CAAAACCGCAATAACTTGGC+CGG | + | chr1_3:64028368-64028387 | None:intergenic | 45.0% | |
| !!! | ATTGCGGTTTTGGATCAAGC+CGG | - | chr1_3:64028376-64028395 | Msa0132740:intron | 45.0% |
| CTAAGCCGTTAACCGTTCTT+CGG | - | chr1_3:64028450-64028469 | Msa0132740:intron | 45.0% | |
| AGTCTCCGAAGAACGGTTAA+CGG | + | chr1_3:64028458-64028477 | None:intergenic | 45.0% | |
| ! | GAGTGTTAGTCTCCGAAGAA+CGG | + | chr1_3:64028465-64028484 | None:intergenic | 45.0% |
| CGAAACAATGGGTGACACAA+TGG | - | chr1_3:64028534-64028553 | Msa0132740:intron | 45.0% | |
| AGCCAATAGTTCATGGACAC+CGG | - | chr1_3:64028991-64029010 | Msa0132740:intron | 45.0% | |
| TTCCGGTGTCCATGAACTAT+TGG | + | chr1_3:64028996-64029015 | None:intergenic | 45.0% | |
| AATAGTTCATGGACACCGGA+AGG | - | chr1_3:64028995-64029014 | Msa0132740:intron | 45.0% | |
| CATATCGCGCTTTGCAAATC+AGG | - | chr1_3:64029218-64029237 | Msa0132740:intron | 45.0% | |
| ! | ATGAGGACGTGGTAGTGATA+TGG | + | chr1_3:64029475-64029494 | None:intergenic | 45.0% |
| ATATCACTACCACGTCCTCA+TGG | - | chr1_3:64029474-64029493 | Msa0132740:intron | 45.0% | |
| TGAATACGTGACGATCCACT+TGG | + | chr1_3:64029646-64029665 | None:intergenic | 45.0% | |
| ! | TCTATGCGGCTTTTGTTCTG+AGG | - | chr1_3:64029941-64029960 | Msa0132740:intron | 45.0% |
| ! | CTATGCGGCTTTTGTTCTGA+GGG | - | chr1_3:64029942-64029961 | Msa0132740:intron | 45.0% |
| TGGATCTTCCCTTCATATCG+AGG | - | chr1_3:64030147-64030166 | Msa0132740:CDS | 45.0% | |
| GGATCTTCCCTTCATATCGA+GGG | - | chr1_3:64030148-64030167 | Msa0132740:CDS | 45.0% | |
| TATCTCGCCCTCGATATGAA+GGG | + | chr1_3:64030158-64030177 | None:intergenic | 45.0% | |
| GGCGAGATAGATTGCTAGAT+TGG | - | chr1_3:64030169-64030188 | Msa0132740:CDS | 45.0% | |
| ! | ACTGGCCAAATTGATGGCAA+GGG | - | chr1_3:64030338-64030357 | Msa0132740:CDS | 45.0% |
| GTGATCCCTTGCCATCAATT+TGG | + | chr1_3:64030346-64030365 | None:intergenic | 45.0% | |
| GAGGTTATTTAGCGCCTGAA+TGG | - | chr1_3:64030397-64030416 | Msa0132740:CDS | 45.0% | |
| GGTCGATTACTAACCCATTC+AGG | + | chr1_3:64030414-64030433 | None:intergenic | 45.0% | |
| GCAGAAGACTTCTTCTATCC+TGG | - | chr1_3:64030522-64030541 | Msa0132740:CDS | 45.0% | |
| TATACCTTGTAAGCCCAACC+AGG | + | chr1_3:64030543-64030562 | None:intergenic | 45.0% | |
| GTATATCAGCATTTCGGCCT+AGG | - | chr1_3:64030583-64030602 | Msa0132740:CDS | 45.0% | |
| TGTTTCCATGAGACCACCAA+TGG | - | chr1_3:64031225-64031244 | Msa0132740:five_prime_UTR | 45.0% | |
| GTTTCCATGAGACCACCAAT+GGG | - | chr1_3:64031226-64031245 | Msa0132740:five_prime_UTR | 45.0% | |
| AATCTCACCACTTCTCCCAT+TGG | + | chr1_3:64031244-64031263 | None:intergenic | 45.0% | |
| ! | AGTACTGTTTGTGGCATTGG+TGG | + | chr1_3:64031301-64031320 | None:intergenic | 45.0% |
| !!! | CAAAAAAATAAAATTATTTT+AGG | + | chr1_3:64031512-64031531 | None:intergenic | 5.0% |
| !! | CTGTTAGAGGCTGGTTTGGA+AGG | + | chr1_3:64028153-64028172 | None:intergenic | 50.0% |
| ! | CGGCCAAGTTATTGCGGTTT+TGG | - | chr1_3:64028366-64028385 | Msa0132740:intron | 50.0% |
| GCATCTTGCACTTGTTTGCC+AGG | - | chr1_3:64028635-64028654 | Msa0132740:intron | 50.0% | |
| !! | TGATGGAATGGGGAGTGCTA+AGG | - | chr1_3:64029045-64029064 | Msa0132740:intron | 50.0% |
| !! | AATGGGGAGTGCTAAGGAGA+AGG | - | chr1_3:64029051-64029070 | Msa0132740:intron | 50.0% |
| CAAGTTTGTCCATGAGGACG+TGG | + | chr1_3:64029486-64029505 | None:intergenic | 50.0% | |
| !! | TTTGTTCTGAGGGACCACAC+AGG | - | chr1_3:64029952-64029971 | Msa0132740:intron | 50.0% |
| CTATCTCGCCCTCGATATGA+AGG | + | chr1_3:64030159-64030178 | None:intergenic | 50.0% | |
| ! | GACTGGCCAAATTGATGGCA+AGG | - | chr1_3:64030337-64030356 | Msa0132740:CDS | 50.0% |
| CTATCCTGGTTGGGCTTACA+AGG | - | chr1_3:64030536-64030555 | Msa0132740:CDS | 50.0% | |
| ! | TTCTCCCATTGGTGGTCTCA+TGG | + | chr1_3:64031233-64031252 | None:intergenic | 50.0% |
| TTCATGGACACCGGAAGGAC+AGG | - | chr1_3:64029000-64029019 | Msa0132740:intron | 55.0% | |
| GACCTTCCATCCTGTCCTTC+CGG | + | chr1_3:64029013-64029032 | None:intergenic | 55.0% | |
| GACCACCATAGGGAAGTTGC+CGG | + | chr1_3:64029381-64029400 | None:intergenic | 55.0% | |
| GGCAAGGGATCACTCTCAAG+TGG | - | chr1_3:64030353-64030372 | Msa0132740:CDS | 55.0% | |
| GAGACCACCAATGGGAGAAG+TGG | - | chr1_3:64031234-64031253 | Msa0132740:five_prime_UTR | 55.0% | |
| CTCACCACTTCTCCCATTGG+TGG | + | chr1_3:64031241-64031260 | None:intergenic | 55.0% | |
| TGGACACCGGAAGGACAGGA+TGG | - | chr1_3:64029004-64029023 | Msa0132740:intron | 60.0% | |
| CACCGGAAGGACAGGATGGA+AGG | - | chr1_3:64029008-64029027 | Msa0132740:intron | 60.0% | |
| ! | ACGCACCGGCAACTTCCCTA+TGG | - | chr1_3:64029373-64029392 | Msa0132740:intron | 60.0% |
| CACCGGCAACTTCCCTATGG+TGG | - | chr1_3:64029376-64029395 | Msa0132740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 64027721 | 64031671 | 64027721 | ID=Msa0132740;Name=Msa0132740 |
| chr1_3 | mRNA | 64027721 | 64031671 | 64027721 | ID=Msa0132740-mRNA-1;Parent=Msa0132740;Name=Msa0132740-mRNA-1;_AED=0.15;_eAED=0.15;_QI=1019|0|1|1|0|1|2|522|189 |
| chr1_3 | exon | 64027721 | 64028280 | 64027721 | ID=Msa0132740-mRNA-1:exon:21447;Parent=Msa0132740-mRNA-1 |
| chr1_3 | exon | 64030121 | 64031671 | 64030121 | ID=Msa0132740-mRNA-1:exon:21446;Parent=Msa0132740-mRNA-1 |
| chr1_3 | five_prime_UTR | 64030653 | 64031671 | 64030653 | ID=Msa0132740-mRNA-1:five_prime_utr;Parent=Msa0132740-mRNA-1 |
| chr1_3 | CDS | 64030121 | 64030652 | 64030121 | ID=Msa0132740-mRNA-1:cds;Parent=Msa0132740-mRNA-1 |
| chr1_3 | CDS | 64028243 | 64028280 | 64028243 | ID=Msa0132740-mRNA-1:cds;Parent=Msa0132740-mRNA-1 |
| chr1_3 | three_prime_UTR | 64027721 | 64028242 | 64027721 | ID=Msa0132740-mRNA-1:three_prime_utr;Parent=Msa0132740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
