AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 188 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGGTTCTTTGTGCAATT+TGG 0.077562 1_3:+64740914 None:intergenic
GTCTTCCGGTTTCATAAAAT+TGG 0.103009 1_3:+64745570 None:intergenic
AAAACCACTGTATCAATTTC+TGG 0.125076 1_3:+64740942 None:intergenic
CAATTTCTGGTTTAGGTTTC+CGG 0.152003 1_3:+64740955 None:intergenic
CGAGAATATTGAACAACTTT+TGG 0.177844 1_3:+64743331 None:intergenic
CCTTTCTCAGGCCTCATTCT+AGG 0.189935 1_3:+64740231 None:intergenic
TGTCGGTGCAAAGTAATTTA+AGG 0.194876 1_3:-64740602 Msa0133470:three_prime_UTR
TTTATGCCTTCTGTAATTAA+TGG 0.195529 1_3:+64745062 None:intergenic
GAACAACTTTGCAGAGAATT+TGG 0.199533 1_3:-64740799 Msa0133470:three_prime_UTR
CTGGTTCCATTTCCATATTT+TGG 0.207098 1_3:+64741002 None:intergenic
ACCTCTGCGGATAAATTAAT+TGG 0.209372 1_3:+64740096 None:intergenic
CAGGGCTGGTTTCTCCCTTT+TGG 0.236355 1_3:-64743496 Msa0133470:intron
TCAAATAGGGTTTGTGCATT+AGG 0.245604 1_3:-64739990 Msa0133470:three_prime_UTR
CCTCCTCCACCAGCAGCTTC+TGG 0.246352 1_3:+64742081 None:intergenic
TCTGGTTCTTTGTGCAATTT+GGG 0.246471 1_3:+64740915 None:intergenic
AAGCCTTCTGAATCTGCTTT+TGG 0.247089 1_3:+64740525 None:intergenic
ACAATAGTACGTTGCGTCTT+AGG 0.249510 1_3:+64741077 None:intergenic
GCTTCTCCTGACCAATATTC+TGG 0.255812 1_3:+64740772 None:intergenic
TGAAAGGAGTCAGGTTTAAT+TGG 0.262890 1_3:+64740750 None:intergenic
CCGCCGATTTCAATTCTTTC+CGG 0.277649 1_3:-64746313 Msa0133470:CDS
TAAAGTTTCTTGGTTAGGTT+TGG 0.278322 1_3:-64745636 Msa0133470:CDS
GAAAATGGCATAGAAGTTAA+AGG 0.285683 1_3:-64741383 Msa0133470:three_prime_UTR
TCAGGAGTCACTCCAAAATA+TGG 0.289770 1_3:-64741014 Msa0133470:three_prime_UTR
CTCAGGCCTCATTCTAGGTT+TGG 0.291161 1_3:+64740236 None:intergenic
ACCTAACCAAGAAACTTTAC+AGG 0.297649 1_3:+64745640 None:intergenic
TCTACACCTTCATTGGTGTC+TGG 0.300627 1_3:+64741272 None:intergenic
AACCCATGAGTTTCTGAATC+AGG 0.303082 1_3:+64740297 None:intergenic
TTTCTTGCTAGAGCAGAAAT+TGG 0.306159 1_3:-64743190 Msa0133470:intron
GGGAATCCTGTAAAGTTTCT+TGG 0.313305 1_3:-64745646 Msa0133470:CDS
TTTAGTAGTTGAACCTTTGC+AGG 0.320130 1_3:+64745123 None:intergenic
TTATGCCTTCTGTAATTAAT+GGG 0.334508 1_3:+64745063 None:intergenic
ACTGTATCAATTTCTGGTTT+AGG 0.337996 1_3:+64740948 None:intergenic
TTACAGACAAGCTGAGGCTT+TGG 0.343221 1_3:-64741462 Msa0133470:intron
GATGGAGGCAATATGGGTTA+TGG 0.344239 1_3:-64740567 Msa0133470:three_prime_UTR
ATTAAACCTGACTCCTTTCA+TGG 0.345827 1_3:-64740747 Msa0133470:three_prime_UTR
GCGAGGGACCAACTTGAAAA+TGG 0.348958 1_3:-64741398 Msa0133470:three_prime_UTR
GATGGAGAGGCTGGAAAGAT+TGG 0.351412 1_3:-64743246 Msa0133470:three_prime_UTR
AAGGAAAACGATAGAGAAAA+TGG 0.352524 1_3:+64746352 None:intergenic
TTCCTTTCCTTTCCTAGGGC+TGG 0.354526 1_3:-64745496 Msa0133470:three_prime_UTR
TCGTGAGTCTTAACTTCATC+TGG 0.355533 1_3:+64740897 None:intergenic
CTTCTGGCATTTCAATGCTT+CGG 0.356524 1_3:+64742097 None:intergenic
AATTTGGCAAACCAGAATAT+TGG 0.361607 1_3:-64740783 Msa0133470:three_prime_UTR
TGATATAGATGGAGGCAATA+TGG 0.363484 1_3:-64740574 Msa0133470:three_prime_UTR
AAGCAGATTCAGAAGGCTTT+CGG 0.365566 1_3:-64740521 Msa0133470:three_prime_UTR
GGAAGACGGAAATGATTCTT+TGG 0.374474 1_3:-64745554 Msa0133470:three_prime_UTR
TTAAGGTTGTGTGATATAGA+TGG 0.376966 1_3:-64740585 Msa0133470:three_prime_UTR
AAAGTTTCTTGGTTAGGTTT+GGG 0.380396 1_3:-64745635 Msa0133470:CDS
ATCAGTCAGGAGTTAAGCTT+TGG 0.382056 1_3:-64740716 Msa0133470:three_prime_UTR
ATCGCCAGAGGAACCATCTT+TGG 0.386656 1_3:-64741333 Msa0133470:three_prime_UTR
TTCCTAGGGCTGGTGGTGAC+AGG 0.386737 1_3:-64745486 Msa0133470:three_prime_UTR
AATGCTTTCCAGGAGGTTCC+AGG 0.387639 1_3:-64743591 Msa0133470:intron
AAACTTACTTTGTGCAAGAA+AGG 0.392052 1_3:+64740476 None:intergenic
ATCGATTGGAAGGGACGATC+CGG 0.393222 1_3:+64746294 None:intergenic
ATCTTCATCTACACCTTCAT+TGG 0.394133 1_3:+64741265 None:intergenic
TTTATCTTGATTCCTTTCTC+AGG 0.400060 1_3:+64740219 None:intergenic
ATTCATTTGGCAGAAATTCC+AGG 0.405266 1_3:-64745162 Msa0133470:intron
TAGAAGAAACAAAGAAGTAG+TGG 0.406278 1_3:-64740164 Msa0133470:three_prime_UTR
ATGGAGGCAATATGGGTTAT+GGG 0.409471 1_3:-64740566 Msa0133470:three_prime_UTR
AAAGAATCATTTCCGTCTTC+CGG 0.410730 1_3:+64745556 None:intergenic
GTCACTCCAAAATATGGAAA+TGG 0.411876 1_3:-64741008 Msa0133470:three_prime_UTR
TCCTGTAAAGTTTCTTGGTT+AGG 0.415855 1_3:-64745641 Msa0133470:CDS
TGAACAAAACTCTCTGTCTT+TGG 0.421485 1_3:+64745086 None:intergenic
GTTATGATTGTGACACTAAT+CGG 0.424357 1_3:-64741169 Msa0133470:three_prime_UTR
TTTAGGGGCATATTGGGATA+AGG 0.425758 1_3:-64744842 Msa0133470:intron
ATTGTAGTAGTCGTAGTAGT+AGG 0.428061 1_3:+64746418 None:intergenic
GCCGTGATAGTGGTAAAGTT+TGG 0.430539 1_3:-64740980 Msa0133470:three_prime_UTR
CTTAGGATGCCTTAGCCGTC+TGG 0.433778 1_3:+64741094 None:intergenic
TGACAAGATTATTCTCTGAT+TGG 0.442959 1_3:+64740832 None:intergenic
AACCATTCCTTTCCTTTCCT+AGG 0.443817 1_3:-64745501 Msa0133470:three_prime_UTR
TTAGTTTCATGCTGGCTCAC+TGG 0.444350 1_3:+64740690 None:intergenic
AATGCACAAACCCTATTTGA+AGG 0.448831 1_3:+64739993 None:intergenic
AGAATTGAAATCGGCGGCGT+AGG 0.451596 1_3:+64746319 None:intergenic
TCTTCCGGTTTCATAAAATT+GGG 0.452669 1_3:+64745571 None:intergenic
ATGGAGAGGCTGGAAAGATT+GGG 0.452673 1_3:-64743245 Msa0133470:three_prime_UTR
ACTACTACGACTACTACAAT+AGG 0.453527 1_3:-64746415 Msa0133470:CDS
TTGCCTCCATGAAAGGAGTC+AGG 0.453534 1_3:+64740741 None:intergenic
CCAGAAGCTGCTGGTGGAGG+AGG 0.458809 1_3:-64742081 Msa0133470:three_prime_UTR
GAATTGAAATCGGCGGCGTA+GGG 0.458949 1_3:+64746320 None:intergenic
GATATAGATGGAGGCAATAT+GGG 0.459827 1_3:-64740573 Msa0133470:three_prime_UTR
GAAGCTGCTGGTGGAGGAGG+AGG 0.460524 1_3:-64742078 Msa0133470:three_prime_UTR
AACTCTCAAAAGTCTAAGTC+AGG 0.461546 1_3:-64741032 Msa0133470:three_prime_UTR
CCACAGTATTATCTCAGGGC+TGG 0.465461 1_3:-64743510 Msa0133470:three_prime_UTR
TGCAGGATATTGTTCAATCC+AGG 0.466123 1_3:-64743377 Msa0133470:intron
GTCTCAACACTTTGAAGTGG+TGG 0.466490 1_3:+64740663 None:intergenic
TGTAGGACTCTAAGATAAGT+AGG 0.466846 1_3:-64744870 Msa0133470:intron
AAAATGGCATAGAAGTTAAA+GGG 0.467666 1_3:-64741382 Msa0133470:three_prime_UTR
GCCTCTGTTCTCTCCTGCAA+AGG 0.470371 1_3:-64745136 Msa0133470:three_prime_UTR
TATAGGAAAACTAGAAGGCC+TGG 0.471838 1_3:+64743359 None:intergenic
AGCAATATTTCTTACCAAAA+GGG 0.473884 1_3:+64743482 None:intergenic
ACCATTCCTTTCCTTTCCTA+GGG 0.476231 1_3:-64745500 Msa0133470:three_prime_UTR
AAATTTGATCATCATTTCCA+TGG 0.478816 1_3:+64740625 None:intergenic
GTCATTTGAGAATGTGATGT+TGG 0.480349 1_3:-64744504 Msa0133470:three_prime_UTR
GGCAAACCAGAATATTGGTC+AGG 0.480574 1_3:-64740778 Msa0133470:three_prime_UTR
TTCCAATCGGATGCACAGTC+AGG 0.483165 1_3:-64741191 Msa0133470:three_prime_UTR
CTACACCTTCATTGGTGTCT+GGG 0.483294 1_3:+64741273 None:intergenic
GCTTAGGCTTAAAGAACAAA+AGG 0.490968 1_3:-64741420 Msa0133470:three_prime_UTR
CTTTCCTTTCCTAGGGCTGG+TGG 0.493616 1_3:-64745493 Msa0133470:three_prime_UTR
GAGGCAGTAAGTTTCGCAAC+TGG 0.493809 1_3:+64745601 None:intergenic
AACTTTACCACTATCACGGC+TGG 0.497031 1_3:+64740983 None:intergenic
CGGCGTAGGGATTGAGAAGA+AGG 0.497610 1_3:+64746333 None:intergenic
CTACAATAGGTGCAGCGTGC+AGG 0.498154 1_3:-64746402 Msa0133470:CDS
GATGTTGCACAATCCTTGAC+TGG 0.499002 1_3:+64740270 None:intergenic
CGAGAGAGGAAGAGATCGAT+TGG 0.499954 1_3:+64746280 None:intergenic
ACGCAACGTACTATTGTCAA+TGG 0.500270 1_3:-64741071 Msa0133470:three_prime_UTR
CAAACCCTATTTGAAGGAAA+AGG 0.502106 1_3:+64739999 None:intergenic
GCAGCCAAAGATGGTTCCTC+TGG 0.504545 1_3:+64741329 None:intergenic
AGGAGGAAGCTGCTCAAAGA+AGG 0.509595 1_3:-64742061 Msa0133470:intron
CACCTGATTCAGAAACTCAT+GGG 0.512560 1_3:-64740299 Msa0133470:three_prime_UTR
AACCTGACTGTGCATCCGAT+TGG 0.515863 1_3:+64741189 None:intergenic
CCTAGAATGAGGCCTGAGAA+AGG 0.517114 1_3:-64740231 Msa0133470:three_prime_UTR
TCACCTGATTCAGAAACTCA+TGG 0.517154 1_3:-64740300 Msa0133470:three_prime_UTR
TTTCATAAAATTGGGAGTAC+CGG 0.520359 1_3:+64745579 None:intergenic
AATGGAACCAGCCGTGATAG+TGG 0.523832 1_3:-64740990 Msa0133470:three_prime_UTR
CAATGGTTGCCAGACGGCTA+AGG 0.524079 1_3:-64741103 Msa0133470:three_prime_UTR
ATGGGAACAAATCTCACGTC+GGG 0.524173 1_3:-64740548 Msa0133470:three_prime_UTR
CATGGAGGCAACAATCAGTC+AGG 0.524598 1_3:-64740729 Msa0133470:three_prime_UTR
AGAAACTTGTGCAAGCAACT+AGG 0.527314 1_3:+64743208 None:intergenic
AAGTCACATGCAGCCAAAGA+TGG 0.527424 1_3:+64741320 None:intergenic
AGCAATTTCGTCACATCATG+TGG 0.528470 1_3:-64740334 Msa0133470:three_prime_UTR
GAAGATATAGGAAAACTAGA+AGG 0.531281 1_3:+64743354 None:intergenic
AGAGGAAGAGATCGATTGGA+AGG 0.534158 1_3:+64746284 None:intergenic
GCCAATTAATTTATCCGCAG+AGG 0.536506 1_3:-64740097 Msa0133470:three_prime_UTR
GTTCACCCATTAATTACAGA+AGG 0.542398 1_3:-64745068 Msa0133470:three_prime_UTR
CTGATTGTTGCCTCCATGAA+AGG 0.543496 1_3:+64740734 None:intergenic
CCTATTTGAAGGAAAAGGAC+AGG 0.547378 1_3:+64740004 None:intergenic
TTGTAGTAGTCGTAGTAGTA+GGG 0.553616 1_3:+64746419 None:intergenic
TGTGTAGCTCTCTGTAGAAG+AGG 0.554214 1_3:-64744540 Msa0133470:intron
TTCATTTGGCAGAAATTCCA+GGG 0.554733 1_3:-64745161 Msa0133470:intron
ACAGAAGTTGACGTAGTCCA+TGG 0.555082 1_3:-64740642 Msa0133470:three_prime_UTR
ATGCCAGAAGCTGCTGGTGG+AGG 0.559726 1_3:-64742084 Msa0133470:three_prime_UTR
GATCCGGAAAGAATTGAAAT+CGG 0.562443 1_3:+64746310 None:intergenic
GCTCTCTGTAGAAGAGGCAA+AGG 0.564425 1_3:-64744534 Msa0133470:three_prime_UTR
GTAGGACTCTAAGATAAGTA+GGG 0.565142 1_3:-64744869 Msa0133470:intron
AGAAGAAACAAAGAAGTAGT+GGG 0.565615 1_3:-64740163 Msa0133470:three_prime_UTR
CATTGCCCAGACACCAATGA+AGG 0.565931 1_3:-64741278 Msa0133470:three_prime_UTR
GTTGCGAAACTTACTGCCTC+CGG 0.571425 1_3:-64745598 Msa0133470:three_prime_UTR
GGAGAGAACAGAGGCCACCC+TGG 0.571933 1_3:+64745144 None:intergenic
AATAATTGAATCCACTGTGC+TGG 0.572644 1_3:+64745463 None:intergenic
GGCATAAACGTGTACACCAT+CGG 0.580800 1_3:-64745047 Msa0133470:three_prime_UTR
GGCCTGTCACCACCAGCCCT+AGG 0.584313 1_3:+64745484 None:intergenic
GGAGCCACAGACATTCCAAT+CGG 0.584540 1_3:-64741204 Msa0133470:three_prime_UTR
ATGCTTTCCAGGAGGTTCCA+GGG 0.584824 1_3:-64743590 Msa0133470:intron
TCTGTCTCAACACTTTGAAG+TGG 0.585570 1_3:+64740660 None:intergenic
CTAAATCCAAACCTAGAATG+AGG 0.586238 1_3:-64740242 Msa0133470:three_prime_UTR
AGGTTGTGTGATATAGATGG+AGG 0.593933 1_3:-64740582 Msa0133470:three_prime_UTR
ATTGAAATGCCAGAAGCTGC+TGG 0.594331 1_3:-64742090 Msa0133470:three_prime_UTR
TCTGTCAGGAAATTGAAGGT+AGG 0.597041 1_3:-64740052 Msa0133470:three_prime_UTR
CATAAAATTGGGAGTACCGG+AGG 0.599078 1_3:+64745582 None:intergenic
TCATGGGTTCAAACCAGTCA+AGG 0.600323 1_3:-64740283 Msa0133470:three_prime_UTR
TCAACTCTTCGAACACAACA+AGG 0.602015 1_3:-64743546 Msa0133470:three_prime_UTR
ATAGTGGTAAAGTTTGGAGC+CGG 0.606698 1_3:-64740974 Msa0133470:three_prime_UTR
GGCTTAAAGAACAAAAGGCG+AGG 0.606871 1_3:-64741415 Msa0133470:three_prime_UTR
TCCAAACTTTACCACTATCA+CGG 0.608024 1_3:+64740979 None:intergenic
AGTCAAGGATTGTGCAACAT+CGG 0.610059 1_3:-64740268 Msa0133470:three_prime_UTR
ATTCAACGGCCTAAAATGAA+AGG 0.611002 1_3:-64746598 None:intergenic
ATTTATTTACAGACAAGCTG+AGG 0.611059 1_3:-64741468 Msa0133470:intron
GCCCTAGGAAAGGAAAGGAA+TGG 0.614272 1_3:+64745499 None:intergenic
TAAACCAGAAATTGATACAG+TGG 0.614991 1_3:-64740946 Msa0133470:three_prime_UTR
GTCACCACCAGCCCTAGGAA+AGG 0.616240 1_3:+64745489 None:intergenic
AATGAGATGACGTACGAGAG+AGG 0.618981 1_3:+64746266 None:intergenic
GGATACATTGATAAGACAAG+CGG 0.623294 1_3:-64745533 Msa0133470:three_prime_UTR
CACCAGCCCTAGGAAAGGAA+AGG 0.626418 1_3:+64745494 None:intergenic
TCATAATCCTCGACGCACAA+TGG 0.626814 1_3:-64741120 Msa0133470:three_prime_UTR
ATTTGAGAATGTGATGTTGG+AGG 0.627772 1_3:-64744501 Msa0133470:intron
CATGCTTTAGAACAGCAACA+AGG 0.632194 1_3:-64745439 Msa0133470:intron
AAAGGGTGCATCAGAAACAC+AGG 0.634148 1_3:-64741365 Msa0133470:three_prime_UTR
GACGCACAATGGTTGCCAGA+CGG 0.637366 1_3:-64741109 Msa0133470:three_prime_UTR
AATAGGTGCAGCGTGCAGGA+AGG 0.639418 1_3:-64746398 Msa0133470:CDS
GAGGAAGAGATCGATTGGAA+GGG 0.639523 1_3:+64746285 None:intergenic
GCTTAAAGAACAAAAGGCGA+GGG 0.639528 1_3:-64741414 Msa0133470:three_prime_UTR
ACATTGATAAGACAAGCGGT+TGG 0.640269 1_3:-64745529 Msa0133470:three_prime_UTR
CTGGCAACCATTGTGCGTCG+AGG 0.640552 1_3:+64741113 None:intergenic
CTTTCACATAGGTAAAGGCG+TGG 0.647669 1_3:-64742136 Msa0133470:intron
GGGCCAAAAGCAGATTCAGA+AGG 0.649820 1_3:-64740528 Msa0133470:three_prime_UTR
GCTTGTACAATTGAAGACCC+TGG 0.657586 1_3:+64743573 None:intergenic
GTGCATCAGAAACACAGGAG+AGG 0.672991 1_3:-64741360 Msa0133470:three_prime_UTR
GCATCCGATTGGAATGTCTG+TGG 0.681947 1_3:+64741200 None:intergenic
GTGGTGACAGGCCAGCACAG+TGG 0.685473 1_3:-64745474 Msa0133470:three_prime_UTR
CCGGAAAGAATTGAAATCGG+CGG 0.685741 1_3:+64746313 None:intergenic
TATGGGAACAAATCTCACGT+CGG 0.688700 1_3:-64740549 Msa0133470:three_prime_UTR
GAAATGCCAGAAGCTGCTGG+TGG 0.694123 1_3:-64742087 Msa0133470:three_prime_UTR
AAACCTGACTCCTTTCATGG+AGG 0.702374 1_3:-64740744 Msa0133470:three_prime_UTR
ACCTTTGCAGGAGAGAACAG+AGG 0.703630 1_3:+64745135 None:intergenic
AGGAGAGGAGATATCGCCAG+AGG 0.716215 1_3:-64741345 Msa0133470:three_prime_UTR
ATTTGGCAGAAATTCCAGGG+TGG 0.736950 1_3:-64745158 Msa0133470:intron
CCAGCCCTGAGATAATACTG+TGG 0.746348 1_3:+64743510 None:intergenic
GAAAACGATAGAGAAAATGG+CGG 0.754096 1_3:+64746355 None:intergenic
TTGTGACACTGATCAGAACG+TGG 0.764373 1_3:-64741225 Msa0133470:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_3:64742406-64742425 Msa0133470:intron 0.0%
!! TATATATATATATATATATA+TGG + chr1_3:64742406-64742425 None:intergenic 0.0%
!! AAATACATATAAAAATAGAA+AGG + chr1_3:64740406-64740425 None:intergenic 10.0%
!!! AATGATTTTAGTTTTAATTA+AGG + chr1_3:64741170-64741189 None:intergenic 10.0%
!! ATTATATCAGAAAAAAAATT+TGG + chr1_3:64741309-64741328 None:intergenic 10.0%
!! AATATATTTAGATTAATTAG+GGG + chr1_3:64742861-64742880 None:intergenic 10.0%
!! CAATATATTTAGATTAATTA+GGG + chr1_3:64742862-64742881 None:intergenic 10.0%
!! ACAATATATTTAGATTAATT+AGG + chr1_3:64742863-64742882 None:intergenic 10.0%
!! GAAAAATATTTACTATAAAA+GGG + chr1_3:64743362-64743381 None:intergenic 10.0%
!! AGAAAAATATTTACTATAAA+AGG + chr1_3:64743363-64743382 None:intergenic 10.0%
!!! TAAATTAATCAATTTTTAGG+TGG + chr1_3:64740021-64740040 None:intergenic 15.0%
!!! ATTGCAATAATAAGAAATTT+TGG - chr1_3:64741081-64741100 Msa0133470:three_prime_UTR 15.0%
!! GATATAATATTTGATTCATT+TGG - chr1_3:64741321-64741340 Msa0133470:three_prime_UTR 15.0%
!!! TCTTTATTTTTTTTCAAACT+CGG - chr1_3:64743660-64743679 Msa0133470:intron 15.0%
!! AGATTTCTATTCTATATTAT+TGG - chr1_3:64743823-64743842 Msa0133470:intron 15.0%
!! AACAAAATACGATTAAATAT+GGG + chr1_3:64743969-64743988 None:intergenic 15.0%
!! TTTAAATAATTGTCATGAAA+AGG - chr1_3:64743990-64744009 Msa0133470:intron 15.0%
!! GAATAATATTTCAATATCTA+AGG - chr1_3:64744118-64744137 Msa0133470:intron 15.0%
!! AAAATATTTCAAGAGTTAAT+TGG - chr1_3:64744528-64744547 Msa0133470:three_prime_UTR 15.0%
!! AAATATTTCAAGAGTTAATT+GGG - chr1_3:64744529-64744548 Msa0133470:three_prime_UTR 15.0%
!!! ACTTTCTTGTAATTTTTAAT+AGG - chr1_3:64744705-64744724 Msa0133470:intron 15.0%
!!! AATTTTTAATAGGTGAAATA+AGG - chr1_3:64744715-64744734 Msa0133470:intron 15.0%
!!! ATTTTTAATAGGTGAAATAA+GGG - chr1_3:64744716-64744735 Msa0133470:intron 15.0%
!! GAAAATTGATATGTATAAAT+TGG + chr1_3:64746048-64746067 None:intergenic 15.0%
!!! TACTGTATCTTTTTTATTAG+AGG + chr1_3:64739989-64740008 None:intergenic 20.0%
!! TATAAAAATTATGGTTCGTT+TGG - chr1_3:64740623-64740642 Msa0133470:three_prime_UTR 20.0%
!! ATGAACAAAAAAGAAATGTT+AGG + chr1_3:64740781-64740800 None:intergenic 20.0%
!! ATCAGAAAAAAAATTTGGTT+TGG + chr1_3:64741304-64741323 None:intergenic 20.0%
!!! TACAATATATAAGAAGCATT+AGG + chr1_3:64741610-64741629 None:intergenic 20.0%
!! TAATGCTTCTTATATATTGT+AGG - chr1_3:64741609-64741628 Msa0133470:intron 20.0%
!!! CAATTTTACATATATGAAGA+AGG - chr1_3:64741694-64741713 Msa0133470:intron 20.0%
!! AAATAAGATGTATTCTTCAT+AGG + chr1_3:64741900-64741919 None:intergenic 20.0%
!! TTTATTAGCATAAATGAAAG+TGG - chr1_3:64742116-64742135 Msa0133470:three_prime_UTR 20.0%
!! TTATTAGCATAAATGAAAGT+GGG - chr1_3:64742117-64742136 Msa0133470:three_prime_UTR 20.0%
!! AAATCATATTCACATTGAAA+AGG + chr1_3:64742332-64742351 None:intergenic 20.0%
!!! AATTGAAAGTTTTTCAAAGA+CGG - chr1_3:64742754-64742773 Msa0133470:intron 20.0%
!!! AGTGAAAATACATTTTTATG+TGG - chr1_3:64743196-64743215 Msa0133470:three_prime_UTR 20.0%
!! ATCTTGCATGATAATAATAT+CGG - chr1_3:64743529-64743548 Msa0133470:three_prime_UTR 20.0%
!!! GTGTATAATTTGTTATTCTA+TGG - chr1_3:64743552-64743571 Msa0133470:three_prime_UTR 20.0%
!! ATTATTGGCATAATAGTATT+AGG - chr1_3:64743838-64743857 Msa0133470:intron 20.0%
!! ACAAAATACGATTAAATATG+GGG + chr1_3:64743968-64743987 None:intergenic 20.0%
!! GAACAAAATACGATTAAATA+TGG + chr1_3:64743970-64743989 None:intergenic 20.0%
!! ATATAATAACAAAACTAGTG+TGG - chr1_3:64744744-64744763 Msa0133470:intron 20.0%
!! CTTGTCTGTAAATAAATAAA+GGG + chr1_3:64745025-64745044 None:intergenic 20.0%
!!! AAATGATGATCAAATTTTGT+CGG - chr1_3:64745877-64745896 Msa0133470:intron 20.0%
!! GAATCTAAGATTAATCGATA+AGG - chr1_3:64740470-64740489 Msa0133470:intron 25.0%
!! TACTATTTTCTATTTTGTGC+AGG - chr1_3:64740828-64740847 Msa0133470:three_prime_UTR 25.0%
!! ACTATTTTCTATTTTGTGCA+GGG - chr1_3:64740829-64740848 Msa0133470:three_prime_UTR 25.0%
! TGTTTGAATTGAACATTTCT+CGG - chr1_3:64741115-64741134 Msa0133470:three_prime_UTR 25.0%
! TTTAATTAAGGCTAATCACA+TGG + chr1_3:64741158-64741177 None:intergenic 25.0%
! TTATGCCTTCTGTAATTAAT+GGG + chr1_3:64741436-64741455 None:intergenic 25.0%
! TTTATGCCTTCTGTAATTAA+TGG + chr1_3:64741437-64741456 None:intergenic 25.0%
!! CTTTATATCTCATAAGTTGA+AGG - chr1_3:64741495-64741514 Msa0133470:intron 25.0%
! AAGTAAACATGAAAATACAC+TGG + chr1_3:64741562-64741581 None:intergenic 25.0%
! TATTAGCATAAATGAAAGTG+GGG - chr1_3:64742118-64742137 Msa0133470:three_prime_UTR 25.0%
! AAAAGTGAGTATGTGAAAAA+GGG + chr1_3:64742186-64742205 None:intergenic 25.0%
! TAAAAGTGAGTATGTGAAAA+AGG + chr1_3:64742187-64742206 None:intergenic 25.0%
! TTTAATCTTTCAACAAACAG+AGG + chr1_3:64742305-64742324 None:intergenic 25.0%
!! TCTGTTTGTTGAAAGATTAA+AGG - chr1_3:64742304-64742323 Msa0133470:intron 25.0%
! GCAAAGTTATAACTAAAAAG+TGG + chr1_3:64742530-64742549 None:intergenic 25.0%
! TCACCTTCATAAAAATTAGT+TGG - chr1_3:64742556-64742575 Msa0133470:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG + chr1_3:64742562-64742581 None:intergenic 25.0%
!!! TCATAGAATAACTTGCTAAA+AGG - chr1_3:64742596-64742615 Msa0133470:intron 25.0%
!!! ATTGAAAGTTTTTCAAAGAC+GGG - chr1_3:64742755-64742774 Msa0133470:intron 25.0%
! AAAACAATAAGAGCTGAAAA+GGG + chr1_3:64742823-64742842 None:intergenic 25.0%
! AGCAATATTTCTTACCAAAA+GGG + chr1_3:64743017-64743036 None:intergenic 25.0%
! TACATATCTACATTATTTGC+AGG - chr1_3:64743102-64743121 Msa0133470:intron 25.0%
!! GAGAATATTGAACAACTTTT+GGG + chr1_3:64743167-64743186 None:intergenic 25.0%
! TCTTGCATGATAATAATATC+GGG - chr1_3:64743530-64743549 Msa0133470:three_prime_UTR 25.0%
!!! TGACACTGATTTTATTGTTT+GGG - chr1_3:64743616-64743635 Msa0133470:intron 25.0%
! TATTGTTAGCTATGTACAAA+GGG - chr1_3:64743795-64743814 Msa0133470:intron 25.0%
! CAAAATACGATTAAATATGG+GGG + chr1_3:64743967-64743986 None:intergenic 25.0%
! AATATGCATCAGAATCATAT+AGG + chr1_3:64744155-64744174 None:intergenic 25.0%
! TAATGTTTGAATATGAACAG+AGG + chr1_3:64744294-64744313 None:intergenic 25.0%
! ATTGTTAACAGATGGAAAAA+TGG + chr1_3:64744595-64744614 None:intergenic 25.0%
! GCTTGTCTGTAAATAAATAA+AGG + chr1_3:64745026-64745045 None:intergenic 25.0%
! AAAATGGCATAGAAGTTAAA+GGG - chr1_3:64745114-64745133 Msa0133470:three_prime_UTR 25.0%
! AAATTTGATCATCATTTCCA+TGG + chr1_3:64745874-64745893 None:intergenic 25.0%
!!! TGTTTTATTGAAACTATGCA+TGG - chr1_3:64746079-64746098 Msa0133470:intron 25.0%
AAGGAAAACGATAGAGAAAA+TGG + chr1_3:64740147-64740166 None:intergenic 30.0%
AGAGATAAGCTTAAACATGT+AGG - chr1_3:64740378-64740397 Msa0133470:intron 30.0%
ATCTCTCAACATATCAAAGT+TGG + chr1_3:64740596-64740615 None:intergenic 30.0%
! CTATTTTCTATTTTGTGCAG+GGG - chr1_3:64740830-64740849 Msa0133470:three_prime_UTR 30.0%
TAAAGTTTCTTGGTTAGGTT+TGG - chr1_3:64740860-64740879 Msa0133470:three_prime_UTR 30.0%
AAAGTTTCTTGGTTAGGTTT+GGG - chr1_3:64740861-64740880 Msa0133470:three_prime_UTR 30.0%
! TTTCATAAAATTGGGAGTAC+CGG + chr1_3:64740920-64740939 None:intergenic 30.0%
! TACTCCCAATTTTATGAAAC+CGG - chr1_3:64740921-64740940 Msa0133470:three_prime_UTR 30.0%
TCTTCCGGTTTCATAAAATT+GGG + chr1_3:64740928-64740947 None:intergenic 30.0%
! AATTTTATGAAACCGGAAGA+CGG - chr1_3:64740928-64740947 Msa0133470:three_prime_UTR 30.0%
GTTTGAATTGAACATTTCTC+GGG - chr1_3:64741116-64741135 Msa0133470:three_prime_UTR 30.0%
GAATCAAATGTACTAGTAAC+GGG + chr1_3:64741282-64741301 None:intergenic 30.0%
GGAATCAAATGTACTAGTAA+CGG + chr1_3:64741283-64741302 None:intergenic 30.0%
! AAGATAAGTAGGGATCTTTT+AGG - chr1_3:64741637-64741656 Msa0133470:intron 30.0%
! AGATAAGTAGGGATCTTTTA+GGG - chr1_3:64741638-64741657 Msa0133470:intron 30.0%
TATGAAGAAGGCTAATTCTA+TGG - chr1_3:64741706-64741725 Msa0133470:intron 30.0%
GATAGGACTTATTGATCAAA+TGG + chr1_3:64741777-64741796 None:intergenic 30.0%
ATTAGCATAAATGAAAGTGG+GGG - chr1_3:64742119-64742138 Msa0133470:three_prime_UTR 30.0%
GTTCTTTCTAATCGTCATAT+TGG - chr1_3:64742266-64742285 Msa0133470:intron 30.0%
TGTATTATTTCCAGACAAGA+AGG + chr1_3:64742372-64742391 None:intergenic 30.0%
AAACAATAAGAGCTGAAAAG+GGG + chr1_3:64742822-64742841 None:intergenic 30.0%
GAAAACAATAAGAGCTGAAA+AGG + chr1_3:64742824-64742843 None:intergenic 30.0%
! TTTTCCACAGTATTATCTCA+GGG - chr1_3:64742982-64743001 Msa0133470:intron 30.0%
CAGCAATATTTCTTACCAAA+AGG + chr1_3:64743018-64743037 None:intergenic 30.0%
CAGCAAAAAACAAGAATGAA+TGG + chr1_3:64743054-64743073 None:intergenic 30.0%
! TTTTGCTGCACATATTCTTT+AGG - chr1_3:64743066-64743085 Msa0133470:intron 30.0%
GAAGATATAGGAAAACTAGA+AGG + chr1_3:64743145-64743164 None:intergenic 30.0%
!! AACAACTTTTGGGAAGATAT+AGG + chr1_3:64743157-64743176 None:intergenic 30.0%
! CGAGAATATTGAACAACTTT+TGG + chr1_3:64743168-64743187 None:intergenic 30.0%
!! ATGCAAAGACATGTTTTTGA+TGG - chr1_3:64743232-64743251 Msa0133470:three_prime_UTR 30.0%
AAGATTTATCTGCAATTCTC+AGG + chr1_3:64743514-64743533 None:intergenic 30.0%
!!! CTGACACTGATTTTATTGTT+TGG - chr1_3:64743615-64743634 Msa0133470:intron 30.0%
! ATTTGGTGAAGTCTCTTTAA+TGG + chr1_3:64743729-64743748 None:intergenic 30.0%
CTATTGTTAGCTATGTACAA+AGG - chr1_3:64743794-64743813 Msa0133470:intron 30.0%
! ATTCATTTTCCCTTTCTACT+CGG + chr1_3:64744095-64744114 None:intergenic 30.0%
! CTGATGCATATTCTCTTTTT+AGG - chr1_3:64744163-64744182 Msa0133470:intron 30.0%
ATGTGAATTTCCTTTCACAT+AGG - chr1_3:64744349-64744368 Msa0133470:intron 30.0%
ATTTCCTTTCACATAGGTAA+AGG - chr1_3:64744355-64744374 Msa0133470:intron 30.0%
!! TGAGTTTCATTTCCACTTTT+AGG - chr1_3:64744492-64744511 Msa0133470:intron 30.0%
AGACAAACATTGTTAACAGA+TGG + chr1_3:64744603-64744622 None:intergenic 30.0%
TCTGTTAACAATGTTTGTCT+TGG - chr1_3:64744603-64744622 Msa0133470:intron 30.0%
CTGTTAACAATGTTTGTCTT+GGG - chr1_3:64744604-64744623 Msa0133470:intron 30.0%
AAAACTAGTGTGGTAAGAAA+TGG - chr1_3:64744754-64744773 Msa0133470:intron 30.0%
!! TCAAAAAGTGCTAATGATGT+TGG - chr1_3:64744932-64744951 Msa0133470:intron 30.0%
TAGTTGTGAACTAGTCATTA+TGG - chr1_3:64744976-64744995 Msa0133470:intron 30.0%
ATTTATTTACAGACAAGCTG+AGG - chr1_3:64745028-64745047 Msa0133470:intron 30.0%
GAAAATGGCATAGAAGTTAA+AGG - chr1_3:64745113-64745132 Msa0133470:three_prime_UTR 30.0%
GTTATGATTGTGACACTAAT+CGG - chr1_3:64745327-64745346 Msa0133470:intron 30.0%
!! ACTTAGACTTTTGAGAGTTT+TGG + chr1_3:64745463-64745482 None:intergenic 30.0%
!! ACTGTATCAATTTCTGGTTT+AGG + chr1_3:64745551-64745570 None:intergenic 30.0%
TAAACCAGAAATTGATACAG+TGG - chr1_3:64745550-64745569 Msa0133470:three_prime_UTR 30.0%
AAAACCACTGTATCAATTTC+TGG + chr1_3:64745557-64745576 None:intergenic 30.0%
TGACAAGATTATTCTCTGAT+TGG + chr1_3:64745667-64745686 None:intergenic 30.0%
AATTTGGCAAACCAGAATAT+TGG - chr1_3:64745713-64745732 Msa0133470:intron 30.0%
TTAAGGTTGTGTGATATAGA+TGG - chr1_3:64745911-64745930 Msa0133470:intron 30.0%
AAACTTACTTTGTGCAAGAA+AGG + chr1_3:64746023-64746042 None:intergenic 30.0%
TTTATCTTGATTCCTTTCTC+AGG + chr1_3:64746280-64746299 None:intergenic 30.0%
TAGAAGAAACAAAGAAGTAG+TGG - chr1_3:64746332-64746351 Msa0133470:CDS 30.0%
AGAAGAAACAAAGAAGTAGT+GGG - chr1_3:64746333-64746352 Msa0133470:CDS 30.0%
! AGTAAAATTTTGAACCTCTG+CGG + chr1_3:64746416-64746435 None:intergenic 30.0%
! GAGGTTCAAAATTTTACTGA+CGG - chr1_3:64746418-64746437 Msa0133470:CDS 30.0%
AGGATCACAAAAATACTTTC+TGG + chr1_3:64746475-64746494 None:intergenic 30.0%
TACCTCAAAACATGATGTGA+TGG - chr1_3:64739921-64739940 Msa0133470:three_prime_UTR 35.0%
! TACCATCACATCATGTTTTG+AGG + chr1_3:64739926-64739945 None:intergenic 35.0%
TTGTAGTAGTCGTAGTAGTA+GGG + chr1_3:64740080-64740099 None:intergenic 35.0%
ATTGTAGTAGTCGTAGTAGT+AGG + chr1_3:64740081-64740100 None:intergenic 35.0%
ACTACTACGACTACTACAAT+AGG - chr1_3:64740081-64740100 Msa0133470:three_prime_UTR 35.0%
GAAAACGATAGAGAAAATGG+CGG + chr1_3:64740144-64740163 None:intergenic 35.0%
GATCCGGAAAGAATTGAAAT+CGG + chr1_3:64740189-64740208 None:intergenic 35.0%
! TTGAAAGATCTTGTTTGCTG+TGG - chr1_3:64740424-64740443 Msa0133470:intron 35.0%
TCTACAACGATTGTTGAGTT+TGG - chr1_3:64740550-64740569 Msa0133470:three_prime_UTR 35.0%
TGCAAAATGCTGCTAATTAC+TGG + chr1_3:64740656-64740675 None:intergenic 35.0%
ATGTAGTGACCTATGTTGTA+AGG - chr1_3:64740683-64740702 Msa0133470:three_prime_UTR 35.0%
GTACCACTATTTAACAACAC+TGG - chr1_3:64740754-64740773 Msa0133470:three_prime_UTR 35.0%
TCCTGTAAAGTTTCTTGGTT+AGG - chr1_3:64740855-64740874 Msa0133470:three_prime_UTR 35.0%
ACCTAACCAAGAAACTTTAC+AGG + chr1_3:64740859-64740878 None:intergenic 35.0%
GTCTTCCGGTTTCATAAAAT+TGG + chr1_3:64740929-64740948 None:intergenic 35.0%
AAAGAATCATTTCCGTCTTC+CGG + chr1_3:64740943-64740962 None:intergenic 35.0%
GGATACATTGATAAGACAAG+CGG - chr1_3:64740963-64740982 Msa0133470:three_prime_UTR 35.0%
AATAATTGAATCCACTGTGC+TGG + chr1_3:64741036-64741055 None:intergenic 35.0%
ATTGAACATTTCTCGGGTAT+TGG - chr1_3:64741122-64741141 Msa0133470:three_prime_UTR 35.0%
TCAGTTACAAATGCAACGAT+AGG + chr1_3:64741203-64741222 None:intergenic 35.0%
ATTCATTTGGCAGAAATTCC+AGG - chr1_3:64741334-64741353 Msa0133470:three_prime_UTR 35.0%
TTCATTTGGCAGAAATTCCA+GGG - chr1_3:64741335-64741354 Msa0133470:three_prime_UTR 35.0%
TTTAGTAGTTGAACCTTTGC+AGG + chr1_3:64741376-64741395 None:intergenic 35.0%
TGAACAAAACTCTCTGTCTT+TGG + chr1_3:64741413-64741432 None:intergenic 35.0%
GTTCACCCATTAATTACAGA+AGG - chr1_3:64741428-64741447 Msa0133470:three_prime_UTR 35.0%
!!! TATCAAGCTTTTTCAACCGA+TGG + chr1_3:64741468-64741487 None:intergenic 35.0%
TCGGTTGAAAAAGCTTGATA+AGG - chr1_3:64741468-64741487 Msa0133470:intron 35.0%
!! AGAAGCATTAGGTCAAATTG+AGG + chr1_3:64741599-64741618 None:intergenic 35.0%
!! TGTAGGACTCTAAGATAAGT+AGG - chr1_3:64741626-64741645 Msa0133470:intron 35.0%
!! GTAGGACTCTAAGATAAGTA+GGG - chr1_3:64741627-64741646 Msa0133470:intron 35.0%
! GATAAGTAGGGATCTTTTAG+GGG - chr1_3:64741639-64741658 Msa0133470:intron 35.0%
AGGACTTATTGATCAAATGG+TGG + chr1_3:64741774-64741793 None:intergenic 35.0%
GCATCAAAGTGAGATATGAT+AGG + chr1_3:64741794-64741813 None:intergenic 35.0%
CATATCTCACTTTGATGCAA+TGG - chr1_3:64741796-64741815 Msa0133470:intron 35.0%
GTCATTTGAGAATGTGATGT+TGG - chr1_3:64741992-64742011 Msa0133470:intron 35.0%
ATTTGAGAATGTGATGTTGG+AGG - chr1_3:64741995-64742014 Msa0133470:intron 35.0%
TTAGCATAAATGAAAGTGGG+GGG - chr1_3:64742120-64742139 Msa0133470:three_prime_UTR 35.0%
TTGCTAAAAGACACCTTCAT+GGG + chr1_3:64742485-64742504 None:intergenic 35.0%
ATTGCTAAAAGACACCTTCA+TGG + chr1_3:64742486-64742505 None:intergenic 35.0%
!! CTAAAAGGCACCTTCATAAA+AGG - chr1_3:64742611-64742630 Msa0133470:intron 35.0%
! CTAGAAGACACCTTTTATGA+AGG + chr1_3:64742624-64742643 None:intergenic 35.0%
! CTTTTCCACAGTATTATCTC+AGG - chr1_3:64742981-64743000 Msa0133470:intron 35.0%
!! AAGACATGTTTTTGATGGAG+AGG - chr1_3:64743237-64743256 Msa0133470:three_prime_UTR 35.0%
TTTCTTGCTAGAGCAGAAAT+TGG - chr1_3:64743306-64743325 Msa0133470:three_prime_UTR 35.0%
!!! AGGGAAAAGTTTTTGAAGCT+AGG + chr1_3:64743343-64743362 None:intergenic 35.0%
! AAGAAGATTGATTCATCACC+AGG - chr1_3:64743483-64743502 Msa0133470:intron 35.0%
TGTTTGGGTATCTGTAAGTT+TGG - chr1_3:64743631-64743650 Msa0133470:intron 35.0%
TCATTATTCACTCTTCCCTT+TGG - chr1_3:64743868-64743887 Msa0133470:intron 35.0%
ATTAAATATGGGGGCAGAAA+GGG + chr1_3:64743958-64743977 None:intergenic 35.0%
AAGAAAAGAACCGAGTAGAA+AGG - chr1_3:64744082-64744101 Msa0133470:intron 35.0%
AGAAAAGAACCGAGTAGAAA+GGG - chr1_3:64744083-64744102 Msa0133470:intron 35.0%
GTAGAAAGGGAAAATGAATC+TGG - chr1_3:64744096-64744115 Msa0133470:intron 35.0%
ATGAAACTCATGAATCACAC+AGG + chr1_3:64744482-64744501 None:intergenic 35.0%
! GTGACTGGTAATGTAAAAGA+GGG + chr1_3:64744646-64744665 None:intergenic 35.0%
CCTAAATGTCCATTAAGTCA+AGG + chr1_3:64744668-64744687 None:intergenic 35.0%
! CCTTGACTTAATGGACATTT+AGG - chr1_3:64744665-64744684 Msa0133470:intron 35.0%
GAAAACGCTTGAAAAAGCTT+AGG - chr1_3:64745060-64745079 Msa0133470:three_prime_UTR 35.0%
GCTTAGGCTTAAAGAACAAA+AGG - chr1_3:64745076-64745095 Msa0133470:three_prime_UTR 35.0%
!!! CTTCTATGCCATTTTCAAGT+TGG + chr1_3:64745109-64745128 None:intergenic 35.0%
ATCTTCATCTACACCTTCAT+TGG + chr1_3:64745234-64745253 None:intergenic 35.0%
AACTCTCAAAAGTCTAAGTC+AGG - chr1_3:64745464-64745483 Msa0133470:three_prime_UTR 35.0%
GTCACTCCAAAATATGGAAA+TGG - chr1_3:64745488-64745507 Msa0133470:three_prime_UTR 35.0%
! CTGGTTCCATTTCCATATTT+TGG + chr1_3:64745497-64745516 None:intergenic 35.0%
TCCAAACTTTACCACTATCA+CGG + chr1_3:64745520-64745539 None:intergenic 35.0%
!! CAATTTCTGGTTTAGGTTTC+CGG + chr1_3:64745544-64745563 None:intergenic 35.0%
!! TCTGGTTCTTTGTGCAATTT+GGG + chr1_3:64745584-64745603 None:intergenic 35.0%
!! ATCTGGTTCTTTGTGCAATT+TGG + chr1_3:64745585-64745604 None:intergenic 35.0%
!! AAGACTCACGAAGTTTTGAT+TGG - chr1_3:64745611-64745630 Msa0133470:three_prime_UTR 35.0%
GAACAACTTTGCAGAGAATT+TGG - chr1_3:64745697-64745716 Msa0133470:intron 35.0%
TGAAAGGAGTCAGGTTTAAT+TGG + chr1_3:64745749-64745768 None:intergenic 35.0%
ATTAAACCTGACTCCTTTCA+TGG - chr1_3:64745749-64745768 Msa0133470:intron 35.0%
!!! GTGGATTTTTAGTTTCATGC+TGG + chr1_3:64745817-64745836 None:intergenic 35.0%
TGTCGGTGCAAAGTAATTTA+AGG - chr1_3:64745894-64745913 Msa0133470:intron 35.0%
TGATATAGATGGAGGCAATA+TGG - chr1_3:64745922-64745941 Msa0133470:intron 35.0%
GATATAGATGGAGGCAATAT+GGG - chr1_3:64745923-64745942 Msa0133470:intron 35.0%
TATTGAAACTATGCATGGCT+TGG - chr1_3:64746084-64746103 Msa0133470:intron 35.0%
! TCCACCAACAATTTTTATGC+AGG - chr1_3:64746130-64746149 Msa0133470:intron 35.0%
TCCTGCATAAAAATTGTTGG+TGG + chr1_3:64746134-64746153 None:intergenic 35.0%
CCATCCTGCATAAAAATTGT+TGG + chr1_3:64746137-64746156 None:intergenic 35.0%
! CCAACAATTTTTATGCAGGA+TGG - chr1_3:64746134-64746153 Msa0133470:intron 35.0%
CTAAATCCAAACCTAGAATG+AGG - chr1_3:64746254-64746273 Msa0133470:intron 35.0%
ACCTCTGCGGATAAATTAAT+TGG + chr1_3:64746403-64746422 None:intergenic 35.0%
! GTTTTCTGTCAGGAAATTGA+AGG - chr1_3:64746440-64746459 Msa0133470:intron 35.0%
! CTGTCCTTTTCCTTCAAATA+GGG - chr1_3:64746493-64746512 Msa0133470:intron 35.0%
CAAACCCTATTTGAAGGAAA+AGG + chr1_3:64746500-64746519 None:intergenic 35.0%
AATGCACAAACCCTATTTGA+AGG + chr1_3:64746506-64746525 None:intergenic 35.0%
TCAAATAGGGTTTGTGCATT+AGG - chr1_3:64746506-64746525 Msa0133470:intron 35.0%
! GGACCAGTGTTGTTAAATAG+TGG + chr1_3:64740760-64740779 None:intergenic 40.0%
GGGAATCCTGTAAAGTTTCT+TGG - chr1_3:64740850-64740869 Msa0133470:three_prime_UTR 40.0%
GGAAGACGGAAATGATTCTT+TGG - chr1_3:64740942-64740961 Msa0133470:three_prime_UTR 40.0%
ACATTGATAAGACAAGCGGT+TGG - chr1_3:64740967-64740986 Msa0133470:three_prime_UTR 40.0%
AACCATTCCTTTCCTTTCCT+AGG - chr1_3:64740995-64741014 Msa0133470:three_prime_UTR 40.0%
ACCATTCCTTTCCTTTCCTA+GGG - chr1_3:64740996-64741015 Msa0133470:three_prime_UTR 40.0%
!! CATGCTTTAGAACAGCAACA+AGG - chr1_3:64741057-64741076 Msa0133470:three_prime_UTR 40.0%
!! GGATCTTTTAGGGGCATATT+GGG - chr1_3:64741648-64741667 Msa0133470:intron 40.0%
! TTTAGGGGCATATTGGGATA+AGG - chr1_3:64741654-64741673 Msa0133470:intron 40.0%
GTGGAAAATTAATGTGTGCG+TGG + chr1_3:64741755-64741774 None:intergenic 40.0%
ATCTCACTTTGATGCAATGG+TGG - chr1_3:64741799-64741818 Msa0133470:intron 40.0%
TGGTGGAACTTATTGATCCA+AGG - chr1_3:64741816-64741835 Msa0133470:intron 40.0%
GGTGGAACTTATTGATCCAA+GGG - chr1_3:64741817-64741836 Msa0133470:intron 40.0%
GGTGAAAACAGACTTGTGAA+TGG - chr1_3:64741838-64741857 Msa0133470:intron 40.0%
CTATTGTGCAGAAGTGAAGT+AGG + chr1_3:64741871-64741890 None:intergenic 40.0%
ATATGACCATTACGTGTGCA+AGG + chr1_3:64742085-64742104 None:intergenic 40.0%
TTTCCAGACAAGAAGGACAA+AGG + chr1_3:64742365-64742384 None:intergenic 40.0%
! TTTTAGCAATCCACACCTCA+AGG - chr1_3:64742496-64742515 Msa0133470:intron 40.0%
AAAGTGGAAATCACACCTTG+AGG + chr1_3:64742514-64742533 None:intergenic 40.0%
ACTACTATGTCTGTGTGTGT+GGG + chr1_3:64742719-64742738 None:intergenic 40.0%
!!! AACCTCCTGGAAAGCATTTT+CGG + chr1_3:64742903-64742922 None:intergenic 40.0%
TCAACTCTTCGAACACAACA+AGG - chr1_3:64742950-64742969 Msa0133470:intron 40.0%
TGCAGGATATTGTTCAATCC+AGG - chr1_3:64743119-64743138 Msa0133470:intron 40.0%
TATAGGAAAACTAGAAGGCC+TGG + chr1_3:64743140-64743159 None:intergenic 40.0%
!!! GTGCAAGCAACTAGGTTTTT+TGG + chr1_3:64743283-64743302 None:intergenic 40.0%
AGAAACTTGTGCAAGCAACT+AGG + chr1_3:64743291-64743310 None:intergenic 40.0%
GCTAGAGCAGAAATTGGTAA+TGG - chr1_3:64743312-64743331 Msa0133470:three_prime_UTR 40.0%
TGCAATTCTCAGGTATATCC+TGG + chr1_3:64743504-64743523 None:intergenic 40.0%
TCAAACTTCCCCAAACAAGA+GGG + chr1_3:64743592-64743611 None:intergenic 40.0%
TTCAAACTTCCCCAAACAAG+AGG + chr1_3:64743593-64743612 None:intergenic 40.0%
! TCTTGTTTGGGGAAGTTTGA+AGG - chr1_3:64743592-64743611 Msa0133470:intron 40.0%
AAGAGACTTCACCAAATAGC+AGG - chr1_3:64743732-64743751 Msa0133470:intron 40.0%
TATTTGAACACACTAGCCAG+TGG + chr1_3:64743758-64743777 None:intergenic 40.0%
GATTAAATATGGGGGCAGAA+AGG + chr1_3:64743959-64743978 None:intergenic 40.0%
AGTCCAGCAAATAGCTACAT+AGG - chr1_3:64744205-64744224 Msa0133470:intron 40.0%
CATCCTATGTAGCTATTTGC+TGG + chr1_3:64744211-64744230 None:intergenic 40.0%
CTTCTGGCATTTCAATGCTT+CGG + chr1_3:64744402-64744421 None:intergenic 40.0%
!!! ATTTCCACTTTTAGGTTGCG+AGG - chr1_3:64744500-64744519 Msa0133470:intron 40.0%
AATTCCTCGCAACCTAAAAG+TGG + chr1_3:64744507-64744526 None:intergenic 40.0%
! GGTGACTGGTAATGTAAAAG+AGG + chr1_3:64744647-64744666 None:intergenic 40.0%
TACCAGTCACCTTGACTTAA+TGG - chr1_3:64744656-64744675 Msa0133470:intron 40.0%
! TGGACATTTAGGACTTTGAG+TGG - chr1_3:64744676-64744695 Msa0133470:intron 40.0%
CTAGTTCACAACTATCACGT+GGG + chr1_3:64744970-64744989 None:intergenic 40.0%
ACTAGTTCACAACTATCACG+TGG + chr1_3:64744971-64744990 None:intergenic 40.0%
GCTTAAAGAACAAAAGGCGA+GGG - chr1_3:64745082-64745101 Msa0133470:three_prime_UTR 40.0%
ACAATAGTACGTTGCGTCTT+AGG + chr1_3:64745422-64745441 None:intergenic 40.0%
ACGCAACGTACTATTGTCAA+TGG - chr1_3:64745425-64745444 Msa0133470:intron 40.0%
TCAGGAGTCACTCCAAAATA+TGG - chr1_3:64745482-64745501 Msa0133470:three_prime_UTR 40.0%
! ATAGTGGTAAAGTTTGGAGC+CGG - chr1_3:64745522-64745541 Msa0133470:three_prime_UTR 40.0%
TCGTGAGTCTTAACTTCATC+TGG + chr1_3:64745602-64745621 None:intergenic 40.0%
ATCAGTCAGGAGTTAAGCTT+TGG - chr1_3:64745780-64745799 Msa0133470:intron 40.0%
! TCTGTCTCAACACTTTGAAG+TGG + chr1_3:64745839-64745858 None:intergenic 40.0%
AGGTTGTGTGATATAGATGG+AGG - chr1_3:64745914-64745933 Msa0133470:intron 40.0%
! ATGGAGGCAATATGGGTTAT+GGG - chr1_3:64745930-64745949 Msa0133470:intron 40.0%
TATGGGAACAAATCTCACGT+CGG - chr1_3:64745947-64745966 Msa0133470:intron 40.0%
! AAGCCTTCTGAATCTGCTTT+TGG + chr1_3:64745974-64745993 None:intergenic 40.0%
AAGCAGATTCAGAAGGCTTT+CGG - chr1_3:64745975-64745994 Msa0133470:intron 40.0%
AGCAATTTCGTCACATCATG+TGG - chr1_3:64746162-64746181 Msa0133470:intron 40.0%
TCACCTGATTCAGAAACTCA+TGG - chr1_3:64746196-64746215 Msa0133470:intron 40.0%
CACCTGATTCAGAAACTCAT+GGG - chr1_3:64746197-64746216 Msa0133470:intron 40.0%
AACCCATGAGTTTCTGAATC+AGG + chr1_3:64746202-64746221 None:intergenic 40.0%
AGTCAAGGATTGTGCAACAT+CGG - chr1_3:64746228-64746247 Msa0133470:intron 40.0%
! TATGCTGCAGCTTTTAGTCT+TGG + chr1_3:64746310-64746329 None:intergenic 40.0%
GCCAATTAATTTATCCGCAG+AGG - chr1_3:64746399-64746418 Msa0133470:CDS 40.0%
! TTTACTGACGGTTTTCTGTC+AGG - chr1_3:64746430-64746449 Msa0133470:CDS 40.0%
TCTGTCAGGAAATTGAAGGT+AGG - chr1_3:64746444-64746463 Msa0133470:intron 40.0%
CCTATTTGAAGGAAAAGGAC+AGG + chr1_3:64746495-64746514 None:intergenic 40.0%
! CCTGTCCTTTTCCTTCAAAT+AGG - chr1_3:64746492-64746511 Msa0133470:intron 40.0%
CCGGAAAGAATTGAAATCGG+CGG + chr1_3:64740186-64740205 None:intergenic 45.0%
!! CCGCCGATTTCAATTCTTTC+CGG - chr1_3:64740183-64740202 Msa0133470:three_prime_UTR 45.0%
GAGGAAGAGATCGATTGGAA+GGG + chr1_3:64740214-64740233 None:intergenic 45.0%
AGAGGAAGAGATCGATTGGA+AGG + chr1_3:64740215-64740234 None:intergenic 45.0%
AATGAGATGACGTACGAGAG+AGG + chr1_3:64740233-64740252 None:intergenic 45.0%
GCGTGATCTAATCTAGATCG+AGG + chr1_3:64740271-64740290 None:intergenic 45.0%
GACCTATGTTGTAAGGATCG+CGG - chr1_3:64740690-64740709 Msa0133470:three_prime_UTR 45.0%
TTCCGCGATCCTTACAACAT+AGG + chr1_3:64740695-64740714 None:intergenic 45.0%
!! CATAAAATTGGGAGTACCGG+AGG + chr1_3:64740917-64740936 None:intergenic 45.0%
ATTTGGCAGAAATTCCAGGG+TGG - chr1_3:64741338-64741357 Msa0133470:three_prime_UTR 45.0%
GGCATAAACGTGTACACCAT+CGG - chr1_3:64741449-64741468 Msa0133470:three_prime_UTR 45.0%
!! GGGATCTTTTAGGGGCATAT+TGG - chr1_3:64741647-64741666 Msa0133470:intron 45.0%
! CACAAGTCTGTTTTCACCCT+TGG + chr1_3:64741836-64741855 None:intergenic 45.0%
TGTGTAGCTCTCTGTAGAAG+AGG - chr1_3:64741956-64741975 Msa0133470:intron 45.0%
GATTTGCCTTGCACACGTAA+TGG - chr1_3:64742076-64742095 Msa0133470:three_prime_UTR 45.0%
CTAAAAGACACCTTCATGGG+TGG + chr1_3:64742482-64742501 None:intergenic 45.0%
GACTACTATGTCTGTGTGTG+TGG + chr1_3:64742720-64742739 None:intergenic 45.0%
!!! TCCTGGAAAGCATTTTCGGT+GGG + chr1_3:64742899-64742918 None:intergenic 45.0%
GCTTGTACAATTGAAGACCC+TGG + chr1_3:64742926-64742945 None:intergenic 45.0%
!! CATGTTTTTGATGGAGAGGC+TGG - chr1_3:64743241-64743260 Msa0133470:three_prime_UTR 45.0%
ATGGAGAGGCTGGAAAGATT+GGG - chr1_3:64743251-64743270 Msa0133470:three_prime_UTR 45.0%
! TCTTCCCTTTGGCTTCTTCA+CGG - chr1_3:64743879-64743898 Msa0133470:intron 45.0%
CACGCCTTTACCTATGTGAA+AGG + chr1_3:64744362-64744381 None:intergenic 45.0%
CTTTCACATAGGTAAAGGCG+TGG - chr1_3:64744360-64744379 Msa0133470:intron 45.0%
ATTGAAATGCCAGAAGCTGC+TGG - chr1_3:64744406-64744425 Msa0133470:intron 45.0%
GTCCATTAAGTCAAGGTGAC+TGG + chr1_3:64744661-64744680 None:intergenic 45.0%
TTACAGACAAGCTGAGGCTT+TGG - chr1_3:64745034-64745053 Msa0133470:three_prime_UTR 45.0%
GGCTTAAAGAACAAAAGGCG+AGG - chr1_3:64745081-64745100 Msa0133470:three_prime_UTR 45.0%
! AAAGGGTGCATCAGAAACAC+AGG - chr1_3:64745131-64745150 Msa0133470:three_prime_UTR 45.0%
AAGTCACATGCAGCCAAAGA+TGG + chr1_3:64745179-64745198 None:intergenic 45.0%
! CTACACCTTCATTGGTGTCT+GGG + chr1_3:64745226-64745245 None:intergenic 45.0%
! TCTACACCTTCATTGGTGTC+TGG + chr1_3:64745227-64745246 None:intergenic 45.0%
TTGTGACACTGATCAGAACG+TGG - chr1_3:64745271-64745290 Msa0133470:intron 45.0%
TCATAATCCTCGACGCACAA+TGG - chr1_3:64745376-64745395 Msa0133470:intron 45.0%
AACTTTACCACTATCACGGC+TGG + chr1_3:64745516-64745535 None:intergenic 45.0%
!! GCCGTGATAGTGGTAAAGTT+TGG - chr1_3:64745516-64745535 Msa0133470:three_prime_UTR 45.0%
GGCAAACCAGAATATTGGTC+AGG - chr1_3:64745718-64745737 Msa0133470:intron 45.0%
GCTTCTCCTGACCAATATTC+TGG + chr1_3:64745727-64745746 None:intergenic 45.0%
AAACCTGACTCCTTTCATGG+AGG - chr1_3:64745752-64745771 Msa0133470:intron 45.0%
CTGATTGTTGCCTCCATGAA+AGG + chr1_3:64745765-64745784 None:intergenic 45.0%
!! TTAGTTTCATGCTGGCTCAC+TGG + chr1_3:64745809-64745828 None:intergenic 45.0%
!! GTCTCAACACTTTGAAGTGG+TGG + chr1_3:64745836-64745855 None:intergenic 45.0%
ACAGAAGTTGACGTAGTCCA+TGG - chr1_3:64745854-64745873 Msa0133470:intron 45.0%
! GATGGAGGCAATATGGGTTA+TGG - chr1_3:64745929-64745948 Msa0133470:intron 45.0%
ATGGGAACAAATCTCACGTC+GGG - chr1_3:64745948-64745967 Msa0133470:intron 45.0%
TCATGGGTTCAAACCAGTCA+AGG - chr1_3:64746213-64746232 Msa0133470:intron 45.0%
GATGTTGCACAATCCTTGAC+TGG + chr1_3:64746229-64746248 None:intergenic 45.0%
!!! ATTTAAATTAATCAATTTTT+AGG + chr1_3:64740024-64740043 None:intergenic 5.0%
!! ATTCAAAAATATAAAAATTA+TGG - chr1_3:64740614-64740633 Msa0133470:three_prime_UTR 5.0%
GAATTGAAATCGGCGGCGTA+GGG + chr1_3:64740179-64740198 None:intergenic 50.0%
AGAATTGAAATCGGCGGCGT+AGG + chr1_3:64740180-64740199 None:intergenic 50.0%
ATCGATTGGAAGGGACGATC+CGG + chr1_3:64740205-64740224 None:intergenic 50.0%
CGAGAGAGGAAGAGATCGAT+TGG + chr1_3:64740219-64740238 None:intergenic 50.0%
GTACTGTAGCGCTATTGCAG+TGG + chr1_3:64740738-64740757 None:intergenic 50.0%
GAGGCAGTAAGTTTCGCAAC+TGG + chr1_3:64740898-64740917 None:intergenic 50.0%
GTTGCGAAACTTACTGCCTC+CGG - chr1_3:64740898-64740917 Msa0133470:three_prime_UTR 50.0%
GCCCTAGGAAAGGAAAGGAA+TGG + chr1_3:64741000-64741019 None:intergenic 50.0%
TTCCTTTCCTTTCCTAGGGC+TGG - chr1_3:64741000-64741019 Msa0133470:three_prime_UTR 50.0%
ACCTTTGCAGGAGAGAACAG+AGG + chr1_3:64741364-64741383 None:intergenic 50.0%
GCTCTCTGTAGAAGAGGCAA+AGG - chr1_3:64741962-64741981 Msa0133470:intron 50.0%
GCATAAATGAAAGTGGGGGG+AGG - chr1_3:64742123-64742142 Msa0133470:three_prime_UTR 50.0%
CGTCCTTTGTCCTTCTTGTC+TGG - chr1_3:64742359-64742378 Msa0133470:intron 50.0%
TTGCTAGAAGCCACCCATGA+AGG - chr1_3:64742469-64742488 Msa0133470:intron 50.0%
GGAAATCACACCTTGAGGTG+TGG + chr1_3:64742509-64742528 None:intergenic 50.0%
!!! CTGGAAAGCATTTTCGGTGG+GGG + chr1_3:64742897-64742916 None:intergenic 50.0%
!!! CCTGGAAAGCATTTTCGGTG+GGG + chr1_3:64742898-64742917 None:intergenic 50.0%
!!! CTCCTGGAAAGCATTTTCGG+TGG + chr1_3:64742900-64742919 None:intergenic 50.0%
CACCGAAAATGCTTTCCAGG+AGG - chr1_3:64742898-64742917 Msa0133470:intron 50.0%
AATGCTTTCCAGGAGGTTCC+AGG - chr1_3:64742905-64742924 Msa0133470:intron 50.0%
ATGCTTTCCAGGAGGTTCCA+GGG - chr1_3:64742906-64742925 Msa0133470:intron 50.0%
CCAGCCCTGAGATAATACTG+TGG + chr1_3:64742989-64743008 None:intergenic 50.0%
CCACAGTATTATCTCAGGGC+TGG - chr1_3:64742986-64743005 Msa0133470:intron 50.0%
GATGGAGAGGCTGGAAAGAT+TGG - chr1_3:64743250-64743269 Msa0133470:three_prime_UTR 50.0%
AGAGAGAGAGAGAGACAGAG+AGG + chr1_3:64743388-64743407 None:intergenic 50.0%
TGCCACACTTCCCTCTTGTT+TGG - chr1_3:64743579-64743598 Msa0133470:three_prime_UTR 50.0%
! GCCACACTTCCCTCTTGTTT+GGG - chr1_3:64743580-64743599 Msa0133470:three_prime_UTR 50.0%
! CCACACTTCCCTCTTGTTTG+GGG - chr1_3:64743581-64743600 Msa0133470:three_prime_UTR 50.0%
ACTCGGCATGATATTGCACG+AGG - chr1_3:64743677-64743696 Msa0133470:intron 50.0%
CTCGGCATGATATTGCACGA+GGG - chr1_3:64743678-64743697 Msa0133470:intron 50.0%
TTCACCAAATAGCAGGCCAC+TGG - chr1_3:64743739-64743758 Msa0133470:intron 50.0%
! CTTCCCTTTGGCTTCTTCAC+GGG - chr1_3:64743880-64743899 Msa0133470:intron 50.0%
CTTCCCGTGAAGAAGCCAAA+GGG + chr1_3:64743886-64743905 None:intergenic 50.0%
AGGGCATGAAATGAACCCTG+AGG - chr1_3:64743914-64743933 Msa0133470:intron 50.0%
AGGAGGAAGCTGCTCAAAGA+AGG - chr1_3:64744435-64744454 Msa0133470:intron 50.0%
GCGAGGGACCAACTTGAAAA+TGG - chr1_3:64745098-64745117 Msa0133470:three_prime_UTR 50.0%
GTGCATCAGAAACACAGGAG+AGG - chr1_3:64745136-64745155 Msa0133470:three_prime_UTR 50.0%
ATCGCCAGAGGAACCATCTT+TGG - chr1_3:64745163-64745182 Msa0133470:intron 50.0%
CATTGCCCAGACACCAATGA+AGG - chr1_3:64745218-64745237 Msa0133470:intron 50.0%
GGAGCCACAGACATTCCAAT+CGG - chr1_3:64745292-64745311 Msa0133470:intron 50.0%
GCATCCGATTGGAATGTCTG+TGG + chr1_3:64745299-64745318 None:intergenic 50.0%
TTCCAATCGGATGCACAGTC+AGG - chr1_3:64745305-64745324 Msa0133470:intron 50.0%
AACCTGACTGTGCATCCGAT+TGG + chr1_3:64745310-64745329 None:intergenic 50.0%
AATGGAACCAGCCGTGATAG+TGG - chr1_3:64745506-64745525 Msa0133470:three_prime_UTR 50.0%
TTGCCTCCATGAAAGGAGTC+AGG + chr1_3:64745758-64745777 None:intergenic 50.0%
CATGGAGGCAACAATCAGTC+AGG - chr1_3:64745767-64745786 Msa0133470:intron 50.0%
GGGCCAAAAGCAGATTCAGA+AGG - chr1_3:64745968-64745987 Msa0133470:intron 50.0%
! AAAGGCTTTTGCAGCATCGC+TGG + chr1_3:64746005-64746024 None:intergenic 50.0%
CTCAGGCCTCATTCTAGGTT+TGG + chr1_3:64746263-64746282 None:intergenic 50.0%
CCTTTCTCAGGCCTCATTCT+AGG + chr1_3:64746268-64746287 None:intergenic 50.0%
CCTAGAATGAGGCCTGAGAA+AGG - chr1_3:64746265-64746284 Msa0133470:intron 50.0%
CTACAATAGGTGCAGCGTGC+AGG - chr1_3:64740094-64740113 Msa0133470:three_prime_UTR 55.0%
AATAGGTGCAGCGTGCAGGA+AGG - chr1_3:64740098-64740117 Msa0133470:three_prime_UTR 55.0%
CGGCGTAGGGATTGAGAAGA+AGG + chr1_3:64740166-64740185 None:intergenic 55.0%
CACCAGCCCTAGGAAAGGAA+AGG + chr1_3:64741005-64741024 None:intergenic 55.0%
CTTTCCTTTCCTAGGGCTGG+TGG - chr1_3:64741003-64741022 Msa0133470:three_prime_UTR 55.0%
GCCTCTGTTCTCTCCTGCAA+AGG - chr1_3:64741360-64741379 Msa0133470:three_prime_UTR 55.0%
CCCCACCGAAAATGCTTTCC+AGG - chr1_3:64742895-64742914 Msa0133470:intron 55.0%
TTGAAGACCCTGGAACCTCC+TGG + chr1_3:64742916-64742935 None:intergenic 55.0%
!!! CAGGGCTGGTTTCTCCCTTT+TGG - chr1_3:64743000-64743019 Msa0133470:intron 55.0%
CCCCAAACAAGAGGGAAGTG+TGG + chr1_3:64743584-64743603 None:intergenic 55.0%
CTAGCCAGTGGCCTGCTATT+TGG + chr1_3:64743746-64743765 None:intergenic 55.0%
CCTTCCCGTGAAGAAGCCAA+AGG + chr1_3:64743887-64743906 None:intergenic 55.0%
! CCTTTGGCTTCTTCACGGGA+AGG - chr1_3:64743884-64743903 Msa0133470:intron 55.0%
GAAATGCCAGAAGCTGCTGG+TGG - chr1_3:64744409-64744428 Msa0133470:intron 55.0%
AGGAGAGGAGATATCGCCAG+AGG - chr1_3:64745151-64745170 Msa0133470:three_prime_UTR 55.0%
GCAGCCAAAGATGGTTCCTC+TGG + chr1_3:64745170-64745189 None:intergenic 55.0%
GACGCACAATGGTTGCCAGA+CGG - chr1_3:64745387-64745406 Msa0133470:intron 55.0%
CAATGGTTGCCAGACGGCTA+AGG - chr1_3:64745393-64745412 Msa0133470:intron 55.0%
CTTAGGATGCCTTAGCCGTC+TGG + chr1_3:64745405-64745424 None:intergenic 55.0%
GTCACCACCAGCCCTAGGAA+AGG + chr1_3:64741010-64741029 None:intergenic 60.0%
! TTCCTAGGGCTGGTGGTGAC+AGG - chr1_3:64741010-64741029 Msa0133470:three_prime_UTR 60.0%
ATGCCAGAAGCTGCTGGTGG+AGG - chr1_3:64744412-64744431 Msa0133470:intron 60.0%
CTGGCAACCATTGTGCGTCG+AGG + chr1_3:64745386-64745405 None:intergenic 60.0%
GTGGTGACAGGCCAGCACAG+TGG - chr1_3:64741022-64741041 Msa0133470:three_prime_UTR 65.0%
GGAGAGAACAGAGGCCACCC+TGG + chr1_3:64741355-64741374 None:intergenic 65.0%
CCAGGGACAGAGTCGCCTCA+GGG + chr1_3:64743932-64743951 None:intergenic 65.0%
GGGGGCAGAAAGGGATGCCA+GGG + chr1_3:64743949-64743968 None:intergenic 65.0%
TGGGGGCAGAAAGGGATGCC+AGG + chr1_3:64743950-64743969 None:intergenic 65.0%
CCTCCTCCACCAGCAGCTTC+TGG + chr1_3:64744418-64744437 None:intergenic 65.0%
CCAGAAGCTGCTGGTGGAGG+AGG - chr1_3:64744415-64744434 Msa0133470:intron 65.0%
GAAGCTGCTGGTGGAGGAGG+AGG - chr1_3:64744418-64744437 Msa0133470:intron 65.0%
GGCCTGTCACCACCAGCCCT+AGG + chr1_3:64741015-64741034 None:intergenic 70.0%
CCCTGAGGCGACTCTGTCCC+TGG - chr1_3:64743929-64743948 Msa0133470:intron 70.0%
GCCAGGGACAGAGTCGCCTC+AGG + chr1_3:64743933-64743952 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64739913 64746605 64739913 ID=Msa0133470;Name=Msa0133470
chr1_3 mRNA 64739913 64746605 64739913 ID=Msa0133470-mRNA-1;Parent=Msa0133470;Name=Msa0133470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.9|0.81|0.90|0.8|0.72|11|2277|73
chr1_3 exon 64739913 64740366 64739913 ID=Msa0133470-mRNA-1:exon:21848;Parent=Msa0133470-mRNA-1
chr1_3 exon 64740484 64741478 64740484 ID=Msa0133470-mRNA-1:exon:21847;Parent=Msa0133470-mRNA-1
chr1_3 exon 64742062 64742147 64742062 ID=Msa0133470-mRNA-1:exon:21846;Parent=Msa0133470-mRNA-1
chr1_3 exon 64743191 64743394 64743191 ID=Msa0133470-mRNA-1:exon:21845;Parent=Msa0133470-mRNA-1
chr1_3 exon 64743497 64743601 64743497 ID=Msa0133470-mRNA-1:exon:21844;Parent=Msa0133470-mRNA-1
chr1_3 exon 64744502 64744555 64744502 ID=Msa0133470-mRNA-1:exon:21843;Parent=Msa0133470-mRNA-1
chr1_3 exon 64744843 64744887 64744843 ID=Msa0133470-mRNA-1:exon:21842;Parent=Msa0133470-mRNA-1
chr1_3 exon 64745029 64745171 64745029 ID=Msa0133470-mRNA-1:exon:21841;Parent=Msa0133470-mRNA-1
chr1_3 exon 64745440 64745668 64745440 ID=Msa0133470-mRNA-1:exon:21840;Parent=Msa0133470-mRNA-1
chr1_3 exon 64746281 64746457 64746281 ID=Msa0133470-mRNA-1:exon:21839;Parent=Msa0133470-mRNA-1
chr1_3 exon 64746599 64746605 64746599 ID=Msa0133470-mRNA-1:exon:21838;Parent=Msa0133470-mRNA-1
chr1_3 CDS 64746599 64746605 64746599 ID=Msa0133470-mRNA-1:cds;Parent=Msa0133470-mRNA-1
chr1_3 CDS 64746281 64746457 64746281 ID=Msa0133470-mRNA-1:cds;Parent=Msa0133470-mRNA-1
chr1_3 CDS 64745631 64745668 64745631 ID=Msa0133470-mRNA-1:cds;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64745440 64745630 64745440 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64745029 64745171 64745029 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64744843 64744887 64744843 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64744502 64744555 64744502 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64743497 64743601 64743497 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64743191 64743394 64743191 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64742062 64742147 64742062 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64740484 64741478 64740484 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
chr1_3 three_prime_UTR 64739913 64740366 64739913 ID=Msa0133470-mRNA-1:three_prime_utr;Parent=Msa0133470-mRNA-1
Gene Sequence

>Msa0133470

ATGAAAGAAACGTTGTTTTTTCGCCCTACTACTACGACTACTACAATAGGTGCAGCGTGCAGGAAGGAAGCAGAGTTCTCTCTTCTACCGCCATTTTCTCTATCGTTTTCCTTCTTCTCAATCCCTACGCCGCCGATTTCAATTCTTTCCGGATCGTCCCTTCCAATCGATCTCTTCCTCTCTCGGGAATCCTGTAAAGTTTCTTGGTTAGGTTTGGGCTGA
Protein sequence

>Msa0133470

MKETLFFRPTTTTTTIGAACRKEAEFSLLPPFSLSFSFFSIPTPPISILSGSSLPIDLFLSRESCKVSWLGLG*