Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134510 | XP_003630638.1 | 92.527 | 281 | 13 | 4 | 1 | 274 | 1 | 280 | 2.28e-165 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134510 | sp|Q7XC57|MYBS3_ORYSJ | 52.047 | 171 | 63 | 5 | 4 | 169 | 3 | 159 | 1.35e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134510 | G7LJK1 | 92.527 | 281 | 13 | 4 | 1 | 274 | 1 | 280 | 1.09e-165 | 469 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0134510 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0134510 | Msa1432910 | 0.914017 | 3.137984e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134510 | MtrunA17_Chr8g0389241 | 92.527 | 281 | 13 | 4 | 1 | 274 | 1 | 280 | 2.10e-169 | 469 |
| Msa0134510 | MtrunA17_Chr6g0488471 | 52.145 | 303 | 102 | 13 | 1 | 274 | 1 | 289 | 5.01e-75 | 230 |
| Msa0134510 | MtrunA17_Chr2g0331031 | 53.371 | 178 | 65 | 5 | 4 | 169 | 3 | 174 | 1.63e-46 | 159 |
| Msa0134510 | MtrunA17_Chr4g0055931 | 47.283 | 184 | 67 | 6 | 4 | 176 | 3 | 167 | 8.32e-44 | 151 |
| Msa0134510 | MtrunA17_Chr5g0415191 | 45.143 | 175 | 73 | 5 | 4 | 168 | 5 | 166 | 3.99e-38 | 136 |
| Msa0134510 | MtrunA17_Chr4g0062741 | 67.089 | 79 | 25 | 1 | 99 | 176 | 132 | 210 | 2.97e-33 | 123 |
| Msa0134510 | MtrunA17_Chr3g0135671 | 35.741 | 263 | 128 | 8 | 4 | 260 | 5 | 232 | 6.52e-32 | 117 |
| Msa0134510 | MtrunA17_Chr1g0162081 | 65.823 | 79 | 26 | 1 | 99 | 176 | 116 | 194 | 7.83e-32 | 119 |
| Msa0134510 | MtrunA17_Chr7g0241761 | 76.056 | 71 | 16 | 1 | 99 | 168 | 134 | 204 | 6.99e-31 | 117 |
| Msa0134510 | MtrunA17_Chr3g0104071 | 71.233 | 73 | 20 | 1 | 97 | 168 | 139 | 211 | 2.05e-30 | 116 |
| Msa0134510 | MtrunA17_Chr5g0429521 | 70.270 | 74 | 21 | 1 | 96 | 168 | 123 | 196 | 2.39e-30 | 115 |
| Msa0134510 | MtrunA17_Chr1g0210471 | 62.791 | 86 | 31 | 1 | 84 | 168 | 103 | 188 | 8.26e-30 | 112 |
| Msa0134510 | MtrunA17_Chr5g0436501 | 64.474 | 76 | 24 | 1 | 96 | 168 | 116 | 191 | 4.25e-27 | 106 |
| Msa0134510 | MtrunA17_Chr4g0059701 | 79.245 | 53 | 11 | 0 | 99 | 151 | 78 | 130 | 7.51e-27 | 105 |
| Msa0134510 | MtrunA17_Chr3g0092621 | 62.319 | 69 | 25 | 1 | 105 | 172 | 84 | 152 | 9.55e-26 | 100 |
| Msa0134510 | MtrunA17_Chr6g0452791 | 75.000 | 48 | 12 | 0 | 105 | 152 | 80 | 127 | 2.02e-21 | 88.6 |
| Msa0134510 | MtrunA17_Chr5g0440731 | 49.383 | 81 | 37 | 2 | 97 | 173 | 97 | 177 | 8.67e-19 | 84.0 |
| Msa0134510 | MtrunA17_Chr5g0409841 | 52.632 | 76 | 33 | 2 | 101 | 173 | 88 | 163 | 9.10e-19 | 82.8 |
| Msa0134510 | MtrunA17_Chr5g0440741 | 54.930 | 71 | 28 | 2 | 107 | 173 | 102 | 172 | 7.09e-18 | 81.3 |
| Msa0134510 | MtrunA17_Chr5g0409831 | 57.143 | 56 | 24 | 0 | 101 | 156 | 73 | 128 | 4.17e-16 | 75.5 |
| Msa0134510 | MtrunA17_Chr8g0365011 | 46.341 | 82 | 29 | 2 | 107 | 173 | 94 | 175 | 2.82e-14 | 71.2 |
| Msa0134510 | MtrunA17_Chr8g0364731 | 56.452 | 62 | 24 | 1 | 115 | 173 | 11 | 72 | 1.15e-13 | 67.8 |
| Msa0134510 | MtrunA17_Chr1g0192061 | 51.562 | 64 | 26 | 3 | 107 | 166 | 63 | 125 | 1.12e-12 | 65.1 |
| Msa0134510 | MtrunA17_Chr5g0432921 | 63.830 | 47 | 16 | 1 | 107 | 153 | 115 | 160 | 9.55e-12 | 63.2 |
| Msa0134510 | MtrunA17_Chr5g0432941 | 61.702 | 47 | 17 | 1 | 107 | 153 | 115 | 160 | 3.04e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134510 | AT5G56840.1 | 54.891 | 184 | 51 | 5 | 1 | 174 | 1 | 162 | 6.42e-53 | 172 |
| Msa0134510 | AT5G61620.1 | 47.904 | 167 | 81 | 3 | 4 | 168 | 10 | 172 | 1.45e-44 | 153 |
| Msa0134510 | AT5G47390.1 | 43.062 | 209 | 96 | 5 | 4 | 208 | 3 | 192 | 1.10e-43 | 152 |
| Msa0134510 | AT1G70000.1 | 47.514 | 181 | 60 | 6 | 4 | 169 | 3 | 163 | 5.81e-40 | 140 |
| Msa0134510 | AT1G70000.2 | 47.514 | 181 | 60 | 6 | 4 | 169 | 3 | 163 | 5.81e-40 | 140 |
| Msa0134510 | AT3G16350.1 | 44.286 | 210 | 63 | 7 | 4 | 169 | 3 | 202 | 3.05e-36 | 133 |
| Msa0134510 | AT1G49010.1 | 69.737 | 76 | 22 | 1 | 99 | 173 | 128 | 203 | 1.29e-32 | 122 |
| Msa0134510 | AT5G08520.1 | 63.855 | 83 | 27 | 2 | 99 | 178 | 112 | 194 | 1.71e-31 | 119 |
| Msa0134510 | AT5G01200.1 | 68.293 | 82 | 23 | 2 | 90 | 168 | 129 | 210 | 5.04e-31 | 116 |
| Msa0134510 | AT2G38090.1 | 73.239 | 71 | 18 | 1 | 99 | 168 | 135 | 205 | 5.44e-30 | 114 |
| Msa0134510 | AT5G58900.1 | 69.863 | 73 | 21 | 1 | 97 | 168 | 133 | 205 | 1.90e-29 | 113 |
| Msa0134510 | AT3G11280.2 | 54.128 | 109 | 43 | 3 | 96 | 199 | 118 | 224 | 2.68e-28 | 109 |
| Msa0134510 | AT3G11280.1 | 54.128 | 109 | 43 | 3 | 96 | 199 | 118 | 224 | 2.68e-28 | 109 |
| Msa0134510 | AT5G04760.1 | 65.714 | 70 | 23 | 1 | 100 | 168 | 94 | 163 | 4.46e-27 | 105 |
| Msa0134510 | AT5G05790.2 | 67.568 | 74 | 23 | 1 | 96 | 168 | 122 | 195 | 5.09e-27 | 106 |
| Msa0134510 | AT5G05790.1 | 67.568 | 74 | 23 | 1 | 96 | 168 | 122 | 195 | 5.09e-27 | 106 |
| Msa0134510 | AT1G19000.2 | 80.392 | 51 | 10 | 0 | 101 | 151 | 98 | 148 | 2.39e-25 | 102 |
| Msa0134510 | AT1G19000.1 | 80.392 | 51 | 10 | 0 | 101 | 151 | 98 | 148 | 2.39e-25 | 102 |
| Msa0134510 | AT1G74840.2 | 76.923 | 52 | 12 | 0 | 100 | 151 | 91 | 142 | 1.76e-24 | 98.6 |
| Msa0134510 | AT1G74840.1 | 76.923 | 52 | 12 | 0 | 100 | 151 | 91 | 142 | 2.56e-24 | 99.0 |
| Msa0134510 | AT3G10580.2 | 61.765 | 68 | 25 | 1 | 101 | 168 | 91 | 157 | 1.99e-21 | 90.9 |
| Msa0134510 | AT3G10580.1 | 61.765 | 68 | 25 | 1 | 101 | 168 | 91 | 157 | 2.86e-21 | 91.3 |
| Msa0134510 | AT5G23650.1 | 56.579 | 76 | 32 | 1 | 99 | 173 | 114 | 189 | 2.89e-21 | 92.0 |
| Msa0134510 | AT4G09450.1 | 67.925 | 53 | 17 | 0 | 101 | 153 | 87 | 139 | 6.67e-18 | 80.1 |
| Msa0134510 | AT3G10590.1 | 54.930 | 71 | 28 | 3 | 101 | 168 | 105 | 174 | 1.47e-14 | 71.2 |
Find 72 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATTAAGTGACGCTAAT+TGG | 0.117960 | 1_3:-66027895 | None:intergenic |
| CCTGCTGGCTCATTCCTTCT+TGG | 0.142813 | 1_3:+66027871 | Msa0134510:CDS |
| TGCTAATTCAGTAGTAAATT+TGG | 0.198359 | 1_3:+66027630 | Msa0134510:CDS |
| TTGGAGGACTTCGTCTCTTC+GGG | 0.227891 | 1_3:+66026375 | Msa0134510:CDS |
| TTGTGCAGCAGTGCCTAATT+TGG | 0.253498 | 1_3:+66027798 | Msa0134510:CDS |
| TATACCTTTCTTTCTCTCTT+GGG | 0.282804 | 1_3:-66026594 | None:intergenic |
| TTTAATTGGTGGTTTGTAAT+GGG | 0.303409 | 1_3:+66026284 | Msa0134510:exon |
| ATATACCTTTCTTTCTCTCT+TGG | 0.345963 | 1_3:-66026595 | None:intergenic |
| CTTGGAGGACTTCGTCTCTT+CGG | 0.346467 | 1_3:+66026374 | Msa0134510:CDS |
| GAAAGTGTGAGGTCCAAATT+AGG | 0.360682 | 1_3:-66027811 | None:intergenic |
| CTTTAATTGGTGGTTTGTAA+TGG | 0.382037 | 1_3:+66026283 | Msa0134510:exon |
| TTAATTAAGTGACGCTAATT+GGG | 0.384534 | 1_3:-66027894 | None:intergenic |
| GAACAAACGAATTAGTTTAG+AGG | 0.384852 | 1_3:-66026218 | None:intergenic |
| CTGTGCTCTTCTTCTGTCCA+TGG | 0.393875 | 1_3:-66027110 | None:intergenic |
| GCTAATTCAGTAGTAAATTT+GGG | 0.397356 | 1_3:+66027631 | Msa0134510:CDS |
| GAGCACAGAACATTCCTTGT+TGG | 0.426067 | 1_3:+66027125 | Msa0134510:CDS |
| TGTTCGCATTGTGGTAAGAT+AGG | 0.440998 | 1_3:+66026317 | Msa0134510:CDS |
| AATGAGGAAGATGGAGAGGA+TGG | 0.441387 | 1_3:-66026476 | None:intergenic |
| CATGGCTAGCGACTTGTGTA+GGG | 0.443009 | 1_3:-66027211 | None:intergenic |
| ATCTTCTTGTACATGAGGTT+AGG | 0.445120 | 1_3:-66027992 | None:intergenic |
| GCATGGCTAGCGACTTGTGT+AGG | 0.465972 | 1_3:-66027212 | None:intergenic |
| ATACCTTTCTTTCTCTCTTG+GGG | 0.468820 | 1_3:-66026593 | None:intergenic |
| CCAAGAAGGAATGAGCCAGC+AGG | 0.469903 | 1_3:-66027871 | None:intergenic |
| CACACACACACTTTAATTGG+TGG | 0.471799 | 1_3:+66026273 | Msa0134510:five_prime_UTR |
| ATGAGGAGGAAGATGATAGT+TGG | 0.475244 | 1_3:-66026400 | None:intergenic |
| CAAAATCAACCCTCCCCTGC+TGG | 0.476253 | 1_3:+66027856 | Msa0134510:CDS |
| GGATTAGAGAAGCTAGGAAA+AGG | 0.476740 | 1_3:+66027146 | Msa0134510:CDS |
| TGCACATCCTTCACTACCCT+TGG | 0.478767 | 1_3:+66026356 | Msa0134510:CDS |
| ATAATTACTCTACAGATAGT+TGG | 0.480375 | 1_3:+66027758 | Msa0134510:CDS |
| AGAAGCTAGGAAAAGGAGAC+TGG | 0.482282 | 1_3:+66027153 | Msa0134510:CDS |
| CCTTTCTTTCTCTCTTGGGG+TGG | 0.484527 | 1_3:-66026590 | None:intergenic |
| TGGAGAGGATGGTGAGGGAA+AGG | 0.486578 | 1_3:-66026465 | None:intergenic |
| CAAGAAGGAATGAGCCAGCA+GGG | 0.487978 | 1_3:-66027870 | None:intergenic |
| ACTTAATTAATTAAGTACTC+TGG | 0.497298 | 1_3:+66027907 | Msa0134510:exon |
| TGCTTCTTCTTGTTTAAAGT+AGG | 0.502048 | 1_3:-66027713 | None:intergenic |
| GTAAGATAGGACATAATTGT+AGG | 0.502669 | 1_3:+66026330 | Msa0134510:CDS |
| CCACCCCAAGAGAGAAAGAA+AGG | 0.504684 | 1_3:+66026590 | Msa0134510:CDS |
| AGAGAATGAGGAAGATGGAG+AGG | 0.510998 | 1_3:-66026480 | None:intergenic |
| ATCATATCTTCTTGTACATG+AGG | 0.512407 | 1_3:-66027997 | None:intergenic |
| GTACAAGAAGATATGATCAA+TGG | 0.515773 | 1_3:+66028003 | Msa0134510:three_prime_UTR |
| AAGGAATGAGCCAGCAGGGG+AGG | 0.519594 | 1_3:-66027866 | None:intergenic |
| GATGAAGAGAATGAGGAAGA+TGG | 0.523435 | 1_3:-66026485 | None:intergenic |
| AAATTTGGGTCATAAATTTG+AGG | 0.527043 | 1_3:+66027645 | Msa0134510:CDS |
| CTTGTTGGATTAGAGAAGCT+AGG | 0.528666 | 1_3:+66027140 | Msa0134510:CDS |
| TTGATTGATCAGGAGTTCCA+TGG | 0.532260 | 1_3:+66027093 | Msa0134510:intron |
| ACATCCTTCACTACCCTTGG+AGG | 0.544075 | 1_3:+66026359 | Msa0134510:CDS |
| TGACGCTAATTGGGCCAAGA+AGG | 0.545277 | 1_3:-66027885 | None:intergenic |
| AGGAATGAGCCAGCAGGGGA+GGG | 0.549931 | 1_3:-66027865 | None:intergenic |
| GGAAGATGGAGAGGATGGTG+AGG | 0.553718 | 1_3:-66026471 | None:intergenic |
| TTAATTGGTGGTTTGTAATG+GGG | 0.554717 | 1_3:+66026285 | Msa0134510:exon |
| AGATATGAAATATTAGAAGT+GGG | 0.561423 | 1_3:-66026548 | None:intergenic |
| GATCAAGAAAAGCTTTAGCA+TGG | 0.562627 | 1_3:+66026439 | Msa0134510:CDS |
| TAGATATGAAATATTAGAAG+TGG | 0.562815 | 1_3:-66026549 | None:intergenic |
| GAAGATGGAGAGGATGGTGA+GGG | 0.564987 | 1_3:-66026470 | None:intergenic |
| CGAAGAGACGAAGTCCTCCA+AGG | 0.582973 | 1_3:-66026373 | None:intergenic |
| AACACCAACACAAAAGAACA+AGG | 0.589703 | 1_3:+66027604 | Msa0134510:CDS |
| TGATGTTGATGAAGAGAATG+AGG | 0.596418 | 1_3:-66026492 | None:intergenic |
| CTAGCTTCTCTAATCCAACA+AGG | 0.600496 | 1_3:-66027139 | None:intergenic |
| AGAAGAAAGTGTTCGCATTG+TGG | 0.603130 | 1_3:+66026308 | Msa0134510:CDS |
| AAGTCCTCCAAGGGTAGTGA+AGG | 0.604978 | 1_3:-66026363 | None:intergenic |
| ACGTTCAAGTCTCTTCGACT+TGG | 0.607278 | 1_3:+66027277 | Msa0134510:CDS |
| TTGTTTAAAGTAGGACAAAG+TGG | 0.607562 | 1_3:-66027704 | None:intergenic |
| TGTGAAGTTGAGATGAATGA+TGG | 0.607811 | 1_3:+66027679 | Msa0134510:CDS |
| AAGAAGGAATGAGCCAGCAG+GGG | 0.613479 | 1_3:-66027869 | None:intergenic |
| TGGAGGACTTCGTCTCTTCG+GGG | 0.623972 | 1_3:+66026376 | Msa0134510:CDS |
| GGTACTAGATGATGATGAGG+AGG | 0.625545 | 1_3:-66026414 | None:intergenic |
| CATGGTACTAGATGATGATG+AGG | 0.639951 | 1_3:-66026417 | None:intergenic |
| GAAGAGACGAAGTCCTCCAA+GGG | 0.651358 | 1_3:-66026372 | None:intergenic |
| ATGGCTAGCGACTTGTGTAG+GGG | 0.659705 | 1_3:-66027210 | None:intergenic |
| CTAGGAAAAGGAGACTGGAG+AGG | 0.661686 | 1_3:+66027158 | Msa0134510:CDS |
| GGGATGCAACTGAAAGTGTG+AGG | 0.693635 | 1_3:-66027822 | None:intergenic |
| ACACCAACACAAAAGAACAA+GGG | 0.712802 | 1_3:+66027605 | Msa0134510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAATATTTATTT+AGG | - | chr1_3:66027518-66027537 | None:intergenic | 0.0% |
| !!! | TTTTATTATTTTTATTTTTA+TGG | + | chr1_3:66027527-66027546 | Msa0134510:intron | 0.0% |
| !! | AAATAATAAAATATTTATTT+AGG | - | chr1_3:66027518-66027537 | None:intergenic | 0.0% |
| !!! | TTTTATTATTTTTATTTTTA+TGG | + | chr1_3:66027527-66027546 | Msa0134510:intron | 0.0% |
| !!! | ATAATAATTTTCATCAATAT+TGG | - | chr1_3:66026522-66026541 | None:intergenic | 10.0% |
| !! | ATAAATAAAAAAACAAATGA+AGG | - | chr1_3:66026835-66026854 | None:intergenic | 10.0% |
| !! | AAATAAAAAAAAGTTAAAAG+AGG | - | chr1_3:66027473-66027492 | None:intergenic | 10.0% |
| !!! | ATAATAATTTTCATCAATAT+TGG | - | chr1_3:66026522-66026541 | None:intergenic | 10.0% |
| !! | ATAAATAAAAAAACAAATGA+AGG | - | chr1_3:66026835-66026854 | None:intergenic | 10.0% |
| !! | AAATAAAAAAAAGTTAAAAG+AGG | - | chr1_3:66027473-66027492 | None:intergenic | 10.0% |
| !! | TATATTTATACATATGTTAG+CGG | + | chr1_3:66026613-66026632 | Msa0134510:intron | 15.0% |
| !!! | TATAAAGGAATATAAGATTT+TGG | - | chr1_3:66026919-66026938 | None:intergenic | 15.0% |
| !! | TCTTATATTCCTTTATATAT+TGG | + | chr1_3:66026922-66026941 | Msa0134510:intron | 15.0% |
| !!! | TAATTTTTATTTGTGGTTAT+GGG | - | chr1_3:66027422-66027441 | None:intergenic | 15.0% |
| !!! | ATAATTTTTATTTGTGGTTA+TGG | - | chr1_3:66027423-66027442 | None:intergenic | 15.0% |
| !! | ATATTATTAATTCAATGACA+AGG | - | chr1_3:66027555-66027574 | None:intergenic | 15.0% |
| !! | TATATTTATACATATGTTAG+CGG | + | chr1_3:66026613-66026632 | Msa0134510:intron | 15.0% |
| !!! | TATAAAGGAATATAAGATTT+TGG | - | chr1_3:66026919-66026938 | None:intergenic | 15.0% |
| !! | TCTTATATTCCTTTATATAT+TGG | + | chr1_3:66026922-66026941 | Msa0134510:intron | 15.0% |
| !!! | TAATTTTTATTTGTGGTTAT+GGG | - | chr1_3:66027422-66027441 | None:intergenic | 15.0% |
| !!! | ATAATTTTTATTTGTGGTTA+TGG | - | chr1_3:66027423-66027442 | None:intergenic | 15.0% |
| !! | ATATTATTAATTCAATGACA+AGG | - | chr1_3:66027555-66027574 | None:intergenic | 15.0% |
| !! | AGATATGAAATATTAGAAGT+GGG | - | chr1_3:66026551-66026570 | None:intergenic | 20.0% |
| !! | TAGATATGAAATATTAGAAG+TGG | - | chr1_3:66026552-66026571 | None:intergenic | 20.0% |
| !!! | TATCTATCAGATTGTTTTAT+AGG | + | chr1_3:66026566-66026585 | Msa0134510:CDS | 20.0% |
| !! | TCTTTCAATTCTATTCTTAT+TGG | - | chr1_3:66026885-66026904 | None:intergenic | 20.0% |
| !! | TATTCCTTTATATATTGGTA+TGG | + | chr1_3:66026927-66026946 | Msa0134510:intron | 20.0% |
| !! | TCAAAAATACTTTCTTAGAT+TGG | + | chr1_3:66027235-66027254 | Msa0134510:CDS | 20.0% |
| !! | AATATAAAGTAAGTCTTACA+TGG | + | chr1_3:66027389-66027408 | Msa0134510:intron | 20.0% |
| !! | ACTTAATTAATTAAGTACTC+TGG | + | chr1_3:66027907-66027926 | Msa0134510:exon | 20.0% |
| !! | AGATATGAAATATTAGAAGT+GGG | - | chr1_3:66026551-66026570 | None:intergenic | 20.0% |
| !! | TAGATATGAAATATTAGAAG+TGG | - | chr1_3:66026552-66026571 | None:intergenic | 20.0% |
| !!! | TATCTATCAGATTGTTTTAT+AGG | + | chr1_3:66026566-66026585 | Msa0134510:CDS | 20.0% |
| !! | TCTTTCAATTCTATTCTTAT+TGG | - | chr1_3:66026885-66026904 | None:intergenic | 20.0% |
| !! | TATTCCTTTATATATTGGTA+TGG | + | chr1_3:66026927-66026946 | Msa0134510:intron | 20.0% |
| !! | TCAAAAATACTTTCTTAGAT+TGG | + | chr1_3:66027235-66027254 | Msa0134510:CDS | 20.0% |
| !! | AATATAAAGTAAGTCTTACA+TGG | + | chr1_3:66027389-66027408 | Msa0134510:intron | 20.0% |
| !! | ACTTAATTAATTAAGTACTC+TGG | + | chr1_3:66027907-66027926 | Msa0134510:exon | 20.0% |
| !! | TTTAATTGGTGGTTTGTAAT+GGG | + | chr1_3:66026284-66026303 | Msa0134510:exon | 25.0% |
| ! | ACATCCATACCAATATATAA+AGG | - | chr1_3:66026934-66026953 | None:intergenic | 25.0% |
| ! | TATACTTCTAATTTGAGCTA+AGG | + | chr1_3:66026991-66027010 | Msa0134510:intron | 25.0% |
| ! | ATACTTCTAATTTGAGCTAA+GGG | + | chr1_3:66026992-66027011 | Msa0134510:intron | 25.0% |
| ! | ATGATGAATGAGAAAATACT+TGG | + | chr1_3:66027039-66027058 | Msa0134510:intron | 25.0% |
| ! | TGATGAATGAGAAAATACTT+GGG | + | chr1_3:66027040-66027059 | Msa0134510:intron | 25.0% |
| !! | TATATACTGATTGATTGATC+AGG | + | chr1_3:66027083-66027102 | Msa0134510:intron | 25.0% |
| !!! | TAAGAAAGTATTTTTGAGCA+TGG | - | chr1_3:66027232-66027251 | None:intergenic | 25.0% |
| ! | AAGACTTACTTTATATTCAG+TGG | - | chr1_3:66027386-66027405 | None:intergenic | 25.0% |
| ! | TGCTAATTCAGTAGTAAATT+TGG | + | chr1_3:66027630-66027649 | Msa0134510:CDS | 25.0% |
| ! | GCTAATTCAGTAGTAAATTT+GGG | + | chr1_3:66027631-66027650 | Msa0134510:CDS | 25.0% |
| ! | AAATTTGGGTCATAAATTTG+AGG | + | chr1_3:66027645-66027664 | Msa0134510:CDS | 25.0% |
| !!! | ATTTTCTTGCTTTTCTGATT+TGG | - | chr1_3:66027740-66027759 | None:intergenic | 25.0% |
| ! | ATAATTACTCTACAGATAGT+TGG | + | chr1_3:66027758-66027777 | Msa0134510:CDS | 25.0% |
| ! | TTAATTAAGTGACGCTAATT+GGG | - | chr1_3:66027897-66027916 | None:intergenic | 25.0% |
| ! | ATTAATTAAGTGACGCTAAT+TGG | - | chr1_3:66027898-66027917 | None:intergenic | 25.0% |
| !! | TTTAATTGGTGGTTTGTAAT+GGG | + | chr1_3:66026284-66026303 | Msa0134510:exon | 25.0% |
| ! | ACATCCATACCAATATATAA+AGG | - | chr1_3:66026934-66026953 | None:intergenic | 25.0% |
| ! | TATACTTCTAATTTGAGCTA+AGG | + | chr1_3:66026991-66027010 | Msa0134510:intron | 25.0% |
| ! | ATACTTCTAATTTGAGCTAA+GGG | + | chr1_3:66026992-66027011 | Msa0134510:intron | 25.0% |
| ! | ATGATGAATGAGAAAATACT+TGG | + | chr1_3:66027039-66027058 | Msa0134510:intron | 25.0% |
| ! | TGATGAATGAGAAAATACTT+GGG | + | chr1_3:66027040-66027059 | Msa0134510:intron | 25.0% |
| !! | TATATACTGATTGATTGATC+AGG | + | chr1_3:66027083-66027102 | Msa0134510:intron | 25.0% |
| !!! | TAAGAAAGTATTTTTGAGCA+TGG | - | chr1_3:66027232-66027251 | None:intergenic | 25.0% |
| ! | AAGACTTACTTTATATTCAG+TGG | - | chr1_3:66027386-66027405 | None:intergenic | 25.0% |
| ! | TGCTAATTCAGTAGTAAATT+TGG | + | chr1_3:66027630-66027649 | Msa0134510:CDS | 25.0% |
| ! | GCTAATTCAGTAGTAAATTT+GGG | + | chr1_3:66027631-66027650 | Msa0134510:CDS | 25.0% |
| ! | AAATTTGGGTCATAAATTTG+AGG | + | chr1_3:66027645-66027664 | Msa0134510:CDS | 25.0% |
| !!! | ATTTTCTTGCTTTTCTGATT+TGG | - | chr1_3:66027740-66027759 | None:intergenic | 25.0% |
| ! | ATAATTACTCTACAGATAGT+TGG | + | chr1_3:66027758-66027777 | Msa0134510:CDS | 25.0% |
| ! | TTAATTAAGTGACGCTAATT+GGG | - | chr1_3:66027897-66027916 | None:intergenic | 25.0% |
| ! | ATTAATTAAGTGACGCTAAT+TGG | - | chr1_3:66027898-66027917 | None:intergenic | 25.0% |
| ! | GAACAAACGAATTAGTTTAG+AGG | - | chr1_3:66026221-66026240 | None:intergenic | 30.0% |
| ! | CTTTAATTGGTGGTTTGTAA+TGG | + | chr1_3:66026283-66026302 | Msa0134510:exon | 30.0% |
| ! | TTAATTGGTGGTTTGTAATG+GGG | + | chr1_3:66026285-66026304 | Msa0134510:exon | 30.0% |
| GTAAGATAGGACATAATTGT+AGG | + | chr1_3:66026330-66026349 | Msa0134510:CDS | 30.0% | |
| TATACCTTTCTTTCTCTCTT+GGG | - | chr1_3:66026597-66026616 | None:intergenic | 30.0% | |
| ATATACCTTTCTTTCTCTCT+TGG | - | chr1_3:66026598-66026617 | None:intergenic | 30.0% | |
| AATATGATATATTTGGCTGC+AGG | + | chr1_3:66027570-66027589 | Msa0134510:intron | 30.0% | |
| ! | TTGTTTAAAGTAGGACAAAG+TGG | - | chr1_3:66027707-66027726 | None:intergenic | 30.0% |
| ! | TGCTTCTTCTTGTTTAAAGT+AGG | - | chr1_3:66027716-66027735 | None:intergenic | 30.0% |
| ! | TTGATTTTGTTCAAGCTTAG+GGG | - | chr1_3:66027845-66027864 | None:intergenic | 30.0% |
| !! | GTTGATTTTGTTCAAGCTTA+GGG | - | chr1_3:66027846-66027865 | None:intergenic | 30.0% |
| ATCATATCTTCTTGTACATG+AGG | - | chr1_3:66028000-66028019 | None:intergenic | 30.0% | |
| GTACAAGAAGATATGATCAA+TGG | + | chr1_3:66028003-66028022 | Msa0134510:three_prime_UTR | 30.0% | |
| ! | GAACAAACGAATTAGTTTAG+AGG | - | chr1_3:66026221-66026240 | None:intergenic | 30.0% |
| ! | CTTTAATTGGTGGTTTGTAA+TGG | + | chr1_3:66026283-66026302 | Msa0134510:exon | 30.0% |
| ! | TTAATTGGTGGTTTGTAATG+GGG | + | chr1_3:66026285-66026304 | Msa0134510:exon | 30.0% |
| GTAAGATAGGACATAATTGT+AGG | + | chr1_3:66026330-66026349 | Msa0134510:CDS | 30.0% | |
| TATACCTTTCTTTCTCTCTT+GGG | - | chr1_3:66026597-66026616 | None:intergenic | 30.0% | |
| ATATACCTTTCTTTCTCTCT+TGG | - | chr1_3:66026598-66026617 | None:intergenic | 30.0% | |
| AATATGATATATTTGGCTGC+AGG | + | chr1_3:66027570-66027589 | Msa0134510:intron | 30.0% | |
| ! | TTGTTTAAAGTAGGACAAAG+TGG | - | chr1_3:66027707-66027726 | None:intergenic | 30.0% |
| ! | TGCTTCTTCTTGTTTAAAGT+AGG | - | chr1_3:66027716-66027735 | None:intergenic | 30.0% |
| ! | TTGATTTTGTTCAAGCTTAG+GGG | - | chr1_3:66027845-66027864 | None:intergenic | 30.0% |
| !! | GTTGATTTTGTTCAAGCTTA+GGG | - | chr1_3:66027846-66027865 | None:intergenic | 30.0% |
| ATCATATCTTCTTGTACATG+AGG | - | chr1_3:66028000-66028019 | None:intergenic | 30.0% | |
| GTACAAGAAGATATGATCAA+TGG | + | chr1_3:66028003-66028022 | Msa0134510:three_prime_UTR | 30.0% | |
| ACACACACACACACTTTAAT+TGG | + | chr1_3:66026270-66026289 | Msa0134510:five_prime_UTR | 35.0% | |
| ! | GCTAAAGCTTTTCTTGATCA+TGG | - | chr1_3:66026438-66026457 | None:intergenic | 35.0% |
| ! | GATCAAGAAAAGCTTTAGCA+TGG | + | chr1_3:66026439-66026458 | Msa0134510:CDS | 35.0% |
| ! | TGATGTTGATGAAGAGAATG+AGG | - | chr1_3:66026495-66026514 | None:intergenic | 35.0% |
| ATACCTTTCTTTCTCTCTTG+GGG | - | chr1_3:66026596-66026615 | None:intergenic | 35.0% | |
| TACATATGTTAGCGGAAAGA+TGG | + | chr1_3:66026621-66026640 | Msa0134510:intron | 35.0% | |
| AAACAAATGAAGGAAGCTGT+TGG | - | chr1_3:66026825-66026844 | None:intergenic | 35.0% | |
| ATTTGAGCTAAGGGAGTTAA+TGG | + | chr1_3:66027001-66027020 | Msa0134510:intron | 35.0% | |
| AACACCAACACAAAAGAACA+AGG | + | chr1_3:66027604-66027623 | Msa0134510:CDS | 35.0% | |
| ACACCAACACAAAAGAACAA+GGG | + | chr1_3:66027605-66027624 | Msa0134510:CDS | 35.0% | |
| ! | ATACCCTTGTTCTTTTGTGT+TGG | - | chr1_3:66027611-66027630 | None:intergenic | 35.0% |
| TGTGAAGTTGAGATGAATGA+TGG | + | chr1_3:66027679-66027698 | Msa0134510:CDS | 35.0% | |
| !! | GGTTGATTTTGTTCAAGCTT+AGG | - | chr1_3:66027847-66027866 | None:intergenic | 35.0% |
| ATCTTCTTGTACATGAGGTT+AGG | - | chr1_3:66027995-66028014 | None:intergenic | 35.0% | |
| ACACACACACACACTTTAAT+TGG | + | chr1_3:66026270-66026289 | Msa0134510:five_prime_UTR | 35.0% | |
| ! | GCTAAAGCTTTTCTTGATCA+TGG | - | chr1_3:66026438-66026457 | None:intergenic | 35.0% |
| ! | GATCAAGAAAAGCTTTAGCA+TGG | + | chr1_3:66026439-66026458 | Msa0134510:CDS | 35.0% |
| ! | TGATGTTGATGAAGAGAATG+AGG | - | chr1_3:66026495-66026514 | None:intergenic | 35.0% |
| ATACCTTTCTTTCTCTCTTG+GGG | - | chr1_3:66026596-66026615 | None:intergenic | 35.0% | |
| TACATATGTTAGCGGAAAGA+TGG | + | chr1_3:66026621-66026640 | Msa0134510:intron | 35.0% | |
| AAACAAATGAAGGAAGCTGT+TGG | - | chr1_3:66026825-66026844 | None:intergenic | 35.0% | |
| ATTTGAGCTAAGGGAGTTAA+TGG | + | chr1_3:66027001-66027020 | Msa0134510:intron | 35.0% | |
| AACACCAACACAAAAGAACA+AGG | + | chr1_3:66027604-66027623 | Msa0134510:CDS | 35.0% | |
| ACACCAACACAAAAGAACAA+GGG | + | chr1_3:66027605-66027624 | Msa0134510:CDS | 35.0% | |
| ! | ATACCCTTGTTCTTTTGTGT+TGG | - | chr1_3:66027611-66027630 | None:intergenic | 35.0% |
| TGTGAAGTTGAGATGAATGA+TGG | + | chr1_3:66027679-66027698 | Msa0134510:CDS | 35.0% | |
| !! | GGTTGATTTTGTTCAAGCTT+AGG | - | chr1_3:66027847-66027866 | None:intergenic | 35.0% |
| ATCTTCTTGTACATGAGGTT+AGG | - | chr1_3:66027995-66028014 | None:intergenic | 35.0% | |
| CACACACACACTTTAATTGG+TGG | + | chr1_3:66026273-66026292 | Msa0134510:five_prime_UTR | 40.0% | |
| !! | AGAAGAAAGTGTTCGCATTG+TGG | + | chr1_3:66026308-66026327 | Msa0134510:CDS | 40.0% |
| TGTTCGCATTGTGGTAAGAT+AGG | + | chr1_3:66026317-66026336 | Msa0134510:CDS | 40.0% | |
| ATGAGGAGGAAGATGATAGT+TGG | - | chr1_3:66026403-66026422 | None:intergenic | 40.0% | |
| ! | CATGGTACTAGATGATGATG+AGG | - | chr1_3:66026420-66026439 | None:intergenic | 40.0% |
| GATGAAGAGAATGAGGAAGA+TGG | - | chr1_3:66026488-66026507 | None:intergenic | 40.0% | |
| TTGATTGATCAGGAGTTCCA+TGG | + | chr1_3:66027093-66027112 | Msa0134510:intron | 40.0% | |
| CTAGCTTCTCTAATCCAACA+AGG | - | chr1_3:66027142-66027161 | None:intergenic | 40.0% | |
| ! | CTTGTTGGATTAGAGAAGCT+AGG | + | chr1_3:66027140-66027159 | Msa0134510:CDS | 40.0% |
| GGATTAGAGAAGCTAGGAAA+AGG | + | chr1_3:66027146-66027165 | Msa0134510:CDS | 40.0% | |
| TATTTGTGGTTATGGGCTTG+TGG | - | chr1_3:66027415-66027434 | None:intergenic | 40.0% | |
| TGATATATTTGGCTGCAGGT+TGG | + | chr1_3:66027574-66027593 | Msa0134510:intron | 40.0% | |
| GATATATTTGGCTGCAGGTT+GGG | + | chr1_3:66027575-66027594 | Msa0134510:intron | 40.0% | |
| ! | GAAAGTGTGAGGTCCAAATT+AGG | - | chr1_3:66027814-66027833 | None:intergenic | 40.0% |
| CACACACACACTTTAATTGG+TGG | + | chr1_3:66026273-66026292 | Msa0134510:five_prime_UTR | 40.0% | |
| !! | AGAAGAAAGTGTTCGCATTG+TGG | + | chr1_3:66026308-66026327 | Msa0134510:CDS | 40.0% |
| TGTTCGCATTGTGGTAAGAT+AGG | + | chr1_3:66026317-66026336 | Msa0134510:CDS | 40.0% | |
| ATGAGGAGGAAGATGATAGT+TGG | - | chr1_3:66026403-66026422 | None:intergenic | 40.0% | |
| ! | CATGGTACTAGATGATGATG+AGG | - | chr1_3:66026420-66026439 | None:intergenic | 40.0% |
| GATGAAGAGAATGAGGAAGA+TGG | - | chr1_3:66026488-66026507 | None:intergenic | 40.0% | |
| TTGATTGATCAGGAGTTCCA+TGG | + | chr1_3:66027093-66027112 | Msa0134510:intron | 40.0% | |
| CTAGCTTCTCTAATCCAACA+AGG | - | chr1_3:66027142-66027161 | None:intergenic | 40.0% | |
| ! | CTTGTTGGATTAGAGAAGCT+AGG | + | chr1_3:66027140-66027159 | Msa0134510:CDS | 40.0% |
| GGATTAGAGAAGCTAGGAAA+AGG | + | chr1_3:66027146-66027165 | Msa0134510:CDS | 40.0% | |
| TATTTGTGGTTATGGGCTTG+TGG | - | chr1_3:66027415-66027434 | None:intergenic | 40.0% | |
| TGATATATTTGGCTGCAGGT+TGG | + | chr1_3:66027574-66027593 | Msa0134510:intron | 40.0% | |
| GATATATTTGGCTGCAGGTT+GGG | + | chr1_3:66027575-66027594 | Msa0134510:intron | 40.0% | |
| ! | GAAAGTGTGAGGTCCAAATT+AGG | - | chr1_3:66027814-66027833 | None:intergenic | 40.0% |
| GTGTGTGTGTGTGAGAGAAT+GGG | - | chr1_3:66026260-66026279 | None:intergenic | 45.0% | |
| TGTGTGTGTGTGTGAGAGAA+TGG | - | chr1_3:66026261-66026280 | None:intergenic | 45.0% | |
| ! | GGTACTAGATGATGATGAGG+AGG | - | chr1_3:66026417-66026436 | None:intergenic | 45.0% |
| AATGAGGAAGATGGAGAGGA+TGG | - | chr1_3:66026479-66026498 | None:intergenic | 45.0% | |
| AGAGAATGAGGAAGATGGAG+AGG | - | chr1_3:66026483-66026502 | None:intergenic | 45.0% | |
| GAGCACAGAACATTCCTTGT+TGG | + | chr1_3:66027125-66027144 | Msa0134510:CDS | 45.0% | |
| AGAAGCTAGGAAAAGGAGAC+TGG | + | chr1_3:66027153-66027172 | Msa0134510:CDS | 45.0% | |
| ACGTTCAAGTCTCTTCGACT+TGG | + | chr1_3:66027277-66027296 | Msa0134510:CDS | 45.0% | |
| TTGTGCAGCAGTGCCTAATT+TGG | + | chr1_3:66027798-66027817 | Msa0134510:CDS | 45.0% | |
| GTGTGTGTGTGTGAGAGAAT+GGG | - | chr1_3:66026260-66026279 | None:intergenic | 45.0% | |
| TGTGTGTGTGTGTGAGAGAA+TGG | - | chr1_3:66026261-66026280 | None:intergenic | 45.0% | |
| ! | GGTACTAGATGATGATGAGG+AGG | - | chr1_3:66026417-66026436 | None:intergenic | 45.0% |
| AATGAGGAAGATGGAGAGGA+TGG | - | chr1_3:66026479-66026498 | None:intergenic | 45.0% | |
| AGAGAATGAGGAAGATGGAG+AGG | - | chr1_3:66026483-66026502 | None:intergenic | 45.0% | |
| GAGCACAGAACATTCCTTGT+TGG | + | chr1_3:66027125-66027144 | Msa0134510:CDS | 45.0% | |
| AGAAGCTAGGAAAAGGAGAC+TGG | + | chr1_3:66027153-66027172 | Msa0134510:CDS | 45.0% | |
| ACGTTCAAGTCTCTTCGACT+TGG | + | chr1_3:66027277-66027296 | Msa0134510:CDS | 45.0% | |
| TTGTGCAGCAGTGCCTAATT+TGG | + | chr1_3:66027798-66027817 | Msa0134510:CDS | 45.0% | |
| !!! | AATTAAATAATTTTTATTTG+TGG | - | chr1_3:66027429-66027448 | None:intergenic | 5.0% |
| !! | AATTAATAATATGATATATT+TGG | + | chr1_3:66027563-66027582 | Msa0134510:intron | 5.0% |
| !!! | AATTAAATAATTTTTATTTG+TGG | - | chr1_3:66027429-66027448 | None:intergenic | 5.0% |
| !! | AATTAATAATATGATATATT+TGG | + | chr1_3:66027563-66027582 | Msa0134510:intron | 5.0% |
| TGCACATCCTTCACTACCCT+TGG | + | chr1_3:66026356-66026375 | Msa0134510:CDS | 50.0% | |
| ACATCCTTCACTACCCTTGG+AGG | + | chr1_3:66026359-66026378 | Msa0134510:CDS | 50.0% | |
| AAGTCCTCCAAGGGTAGTGA+AGG | - | chr1_3:66026366-66026385 | None:intergenic | 50.0% | |
| GAAGAGACGAAGTCCTCCAA+GGG | - | chr1_3:66026375-66026394 | None:intergenic | 50.0% | |
| CTTGGAGGACTTCGTCTCTT+CGG | + | chr1_3:66026374-66026393 | Msa0134510:CDS | 50.0% | |
| TTGGAGGACTTCGTCTCTTC+GGG | + | chr1_3:66026375-66026394 | Msa0134510:CDS | 50.0% | |
| GAAGATGGAGAGGATGGTGA+GGG | - | chr1_3:66026473-66026492 | None:intergenic | 50.0% | |
| CCTTTCTTTCTCTCTTGGGG+TGG | - | chr1_3:66026593-66026612 | None:intergenic | 50.0% | |
| CCACCCCAAGAGAGAAAGAA+AGG | + | chr1_3:66026590-66026609 | Msa0134510:CDS | 50.0% | |
| CTGTGCTCTTCTTCTGTCCA+TGG | - | chr1_3:66027113-66027132 | None:intergenic | 50.0% | |
| CTAGGAAAAGGAGACTGGAG+AGG | + | chr1_3:66027158-66027177 | Msa0134510:CDS | 50.0% | |
| ATGGCTAGCGACTTGTGTAG+GGG | - | chr1_3:66027213-66027232 | None:intergenic | 50.0% | |
| CATGGCTAGCGACTTGTGTA+GGG | - | chr1_3:66027214-66027233 | None:intergenic | 50.0% | |
| ! | GGGATGCAACTGAAAGTGTG+AGG | - | chr1_3:66027825-66027844 | None:intergenic | 50.0% |
| AAGAAGGAATGAGCCAGCAG+GGG | - | chr1_3:66027872-66027891 | None:intergenic | 50.0% | |
| CAAGAAGGAATGAGCCAGCA+GGG | - | chr1_3:66027873-66027892 | None:intergenic | 50.0% | |
| TGACGCTAATTGGGCCAAGA+AGG | - | chr1_3:66027888-66027907 | None:intergenic | 50.0% | |
| TGCACATCCTTCACTACCCT+TGG | + | chr1_3:66026356-66026375 | Msa0134510:CDS | 50.0% | |
| ACATCCTTCACTACCCTTGG+AGG | + | chr1_3:66026359-66026378 | Msa0134510:CDS | 50.0% | |
| AAGTCCTCCAAGGGTAGTGA+AGG | - | chr1_3:66026366-66026385 | None:intergenic | 50.0% | |
| GAAGAGACGAAGTCCTCCAA+GGG | - | chr1_3:66026375-66026394 | None:intergenic | 50.0% | |
| CTTGGAGGACTTCGTCTCTT+CGG | + | chr1_3:66026374-66026393 | Msa0134510:CDS | 50.0% | |
| TTGGAGGACTTCGTCTCTTC+GGG | + | chr1_3:66026375-66026394 | Msa0134510:CDS | 50.0% | |
| GAAGATGGAGAGGATGGTGA+GGG | - | chr1_3:66026473-66026492 | None:intergenic | 50.0% | |
| CCTTTCTTTCTCTCTTGGGG+TGG | - | chr1_3:66026593-66026612 | None:intergenic | 50.0% | |
| CCACCCCAAGAGAGAAAGAA+AGG | + | chr1_3:66026590-66026609 | Msa0134510:CDS | 50.0% | |
| CTGTGCTCTTCTTCTGTCCA+TGG | - | chr1_3:66027113-66027132 | None:intergenic | 50.0% | |
| CTAGGAAAAGGAGACTGGAG+AGG | + | chr1_3:66027158-66027177 | Msa0134510:CDS | 50.0% | |
| ATGGCTAGCGACTTGTGTAG+GGG | - | chr1_3:66027213-66027232 | None:intergenic | 50.0% | |
| CATGGCTAGCGACTTGTGTA+GGG | - | chr1_3:66027214-66027233 | None:intergenic | 50.0% | |
| ! | GGGATGCAACTGAAAGTGTG+AGG | - | chr1_3:66027825-66027844 | None:intergenic | 50.0% |
| AAGAAGGAATGAGCCAGCAG+GGG | - | chr1_3:66027872-66027891 | None:intergenic | 50.0% | |
| CAAGAAGGAATGAGCCAGCA+GGG | - | chr1_3:66027873-66027892 | None:intergenic | 50.0% | |
| TGACGCTAATTGGGCCAAGA+AGG | - | chr1_3:66027888-66027907 | None:intergenic | 50.0% | |
| CGAAGAGACGAAGTCCTCCA+AGG | - | chr1_3:66026376-66026395 | None:intergenic | 55.0% | |
| TGGAGGACTTCGTCTCTTCG+GGG | + | chr1_3:66026376-66026395 | Msa0134510:CDS | 55.0% | |
| TGGAGAGGATGGTGAGGGAA+AGG | - | chr1_3:66026468-66026487 | None:intergenic | 55.0% | |
| GGAAGATGGAGAGGATGGTG+AGG | - | chr1_3:66026474-66026493 | None:intergenic | 55.0% | |
| GCATGGCTAGCGACTTGTGT+AGG | - | chr1_3:66027215-66027234 | None:intergenic | 55.0% | |
| CAAAATCAACCCTCCCCTGC+TGG | + | chr1_3:66027856-66027875 | Msa0134510:CDS | 55.0% | |
| CCAAGAAGGAATGAGCCAGC+AGG | - | chr1_3:66027874-66027893 | None:intergenic | 55.0% | |
| !! | CCTGCTGGCTCATTCCTTCT+TGG | + | chr1_3:66027871-66027890 | Msa0134510:CDS | 55.0% |
| CGAAGAGACGAAGTCCTCCA+AGG | - | chr1_3:66026376-66026395 | None:intergenic | 55.0% | |
| TGGAGGACTTCGTCTCTTCG+GGG | + | chr1_3:66026376-66026395 | Msa0134510:CDS | 55.0% | |
| TGGAGAGGATGGTGAGGGAA+AGG | - | chr1_3:66026468-66026487 | None:intergenic | 55.0% | |
| GGAAGATGGAGAGGATGGTG+AGG | - | chr1_3:66026474-66026493 | None:intergenic | 55.0% | |
| GCATGGCTAGCGACTTGTGT+AGG | - | chr1_3:66027215-66027234 | None:intergenic | 55.0% | |
| CAAAATCAACCCTCCCCTGC+TGG | + | chr1_3:66027856-66027875 | Msa0134510:CDS | 55.0% | |
| CCAAGAAGGAATGAGCCAGC+AGG | - | chr1_3:66027874-66027893 | None:intergenic | 55.0% | |
| !! | CCTGCTGGCTCATTCCTTCT+TGG | + | chr1_3:66027871-66027890 | Msa0134510:CDS | 55.0% |
| AGGAATGAGCCAGCAGGGGA+GGG | - | chr1_3:66027868-66027887 | None:intergenic | 60.0% | |
| AAGGAATGAGCCAGCAGGGG+AGG | - | chr1_3:66027869-66027888 | None:intergenic | 60.0% | |
| AGGAATGAGCCAGCAGGGGA+GGG | - | chr1_3:66027868-66027887 | None:intergenic | 60.0% | |
| AAGGAATGAGCCAGCAGGGG+AGG | - | chr1_3:66027869-66027888 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66026214 | 66028037 | 66026214 | ID=Msa0134510;Name=Msa0134510 |
| chr1_3 | mRNA | 66026214 | 66028037 | 66026214 | ID=Msa0134510-mRNA-1;Parent=Msa0134510;Name=Msa0134510-mRNA-1;_AED=0.11;_eAED=0.11;_QI=88|1|1|1|1|1|3|125|274 |
| chr1_3 | exon | 66026214 | 66026611 | 66026214 | ID=Msa0134510-mRNA-1:exon:22490;Parent=Msa0134510-mRNA-1 |
| chr1_3 | exon | 66027105 | 66027298 | 66027105 | ID=Msa0134510-mRNA-1:exon:22491;Parent=Msa0134510-mRNA-1 |
| chr1_3 | exon | 66027592 | 66028037 | 66027592 | ID=Msa0134510-mRNA-1:exon:22492;Parent=Msa0134510-mRNA-1 |
| chr1_3 | five_prime_UTR | 66026214 | 66026301 | 66026214 | ID=Msa0134510-mRNA-1:five_prime_utr;Parent=Msa0134510-mRNA-1 |
| chr1_3 | CDS | 66026302 | 66026611 | 66026302 | ID=Msa0134510-mRNA-1:cds;Parent=Msa0134510-mRNA-1 |
| chr1_3 | CDS | 66027105 | 66027298 | 66027105 | ID=Msa0134510-mRNA-1:cds;Parent=Msa0134510-mRNA-1 |
| chr1_3 | CDS | 66027592 | 66027912 | 66027592 | ID=Msa0134510-mRNA-1:cds;Parent=Msa0134510-mRNA-1 |
| chr1_3 | three_prime_UTR | 66027913 | 66028037 | 66027913 | ID=Msa0134510-mRNA-1:three_prime_utr;Parent=Msa0134510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
