AlfalfaGEDB | Msa1432910

M. sativa cultivar zhongmu-4 / Msa1432910

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432910	XP_003630638.1	92.883	281	12	4	1	274	1	280	3.43e-166	471

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432910	sp\|Q7XC57\|MYBS3_ORYSJ	52.047	171	63	5	4	169	3	159	1.62e-46	161

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432910	G7LJK1	92.883	281	12	4	1	274	1	280	1.64e-166	471

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TFs/TRs:

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Gene ID	Type	Classification
Msa1432910	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0134510	Msa1432910	0.914017	3.137984e-84	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432910	MtrunA17_Chr8g0389241	92.883	281	12	4	1	274	1	280	3.15e-170	471
Msa1432910	MtrunA17_Chr6g0488471	52.145	303	102	13	1	274	1	289	7.09e-75	230
Msa1432910	MtrunA17_Chr2g0331031	53.371	178	65	5	4	169	3	174	1.56e-46	159
Msa1432910	MtrunA17_Chr4g0055931	47.283	184	67	6	4	176	3	167	1.03e-43	151
Msa1432910	MtrunA17_Chr5g0415191	45.143	175	73	5	4	168	5	166	4.12e-38	136
Msa1432910	MtrunA17_Chr4g0062741	67.089	79	25	1	99	176	132	210	3.79e-33	122
Msa1432910	MtrunA17_Chr3g0135671	35.741	263	128	8	4	260	5	232	7.97e-32	117
Msa1432910	MtrunA17_Chr1g0162081	65.823	79	26	1	99	176	116	194	8.00e-32	119
Msa1432910	MtrunA17_Chr7g0241761	76.056	71	16	1	99	168	134	204	7.84e-31	117
Msa1432910	MtrunA17_Chr3g0104071	71.233	73	20	1	97	168	139	211	2.23e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432910	AT5G56840.1	54.891	184	51	5	1	174	1	162	5.82e-53	172
Msa1432910	AT5G61620.1	47.904	167	81	3	4	168	10	172	1.94e-44	153
Msa1432910	AT5G47390.1	43.062	209	96	5	4	208	3	192	1.10e-43	152
Msa1432910	AT1G70000.1	47.514	181	60	6	4	169	3	163	5.69e-40	140
Msa1432910	AT1G70000.2	47.514	181	60	6	4	169	3	163	5.69e-40	140
Msa1432910	AT3G16350.1	44.286	210	63	7	4	169	3	202	3.96e-36	133
Msa1432910	AT1G49010.1	69.737	76	22	1	99	173	128	203	1.44e-32	122
Msa1432910	AT5G08520.1	63.855	83	27	2	99	178	112	194	1.79e-31	118
Msa1432910	AT5G01200.1	68.293	82	23	2	90	168	129	210	4.99e-31	116
Msa1432910	AT2G38090.1	73.239	71	18	1	99	168	135	205	5.73e-30	114

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Find 74 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGACGAAGTCCTCCAA+GGG	0.643343	tig0027185:+16071	None:intergenic
AAATTTGGGTCATAAATTTG+AGG	0.527043	tig0027185:-14799	Msa1432910:CDS
AACACCAACACAAAAGAACA+AGG	0.589703	tig0027185:-14840	Msa1432910:CDS
AAGAAGGAATGAGCCAGCAG+GGG	0.613479	tig0027185:+14575	None:intergenic
AAGGAATGAGCCAGCAGGGG+AGG	0.519594	tig0027185:+14578	None:intergenic
AAGTCCTCCAAGGGTAGTGA+AGG	0.604978	tig0027185:+16080	None:intergenic
AATGAGGAAGATGGAGAGGA+TGG	0.441387	tig0027185:+15967	None:intergenic
ACACCAACACAAAAGAACAA+GGG	0.712802	tig0027185:-14839	Msa1432910:CDS
ACATCCTTCACTACCCTTGG+AGG	0.544075	tig0027185:-16084	Msa1432910:CDS
ACGAGGAGGATGATGATAGT+TGG	0.527221	tig0027185:+16043	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAGATAGGACATAATTGT+AGG	-	tig0027185:14549-14568	Msa1432910:exon	30.0%
TATACCTTTCTTTCTCTCTT+GGG	+	tig0027185:14816-14835	None:intergenic	30.0%
ATATACCTTTCTTTCTCTCT+TGG	+	tig0027185:14817-14836	None:intergenic	30.0%
AATATGATATATTTGGCTGC+AGG	-	tig0027185:15788-15807	Msa1432910:intron	30.0%
ATCATATCTTCTTGTACATG+AGG	+	tig0027185:16218-16237	None:intergenic	30.0%
GTACAAGAAGATATGATCAA+TGG	-	tig0027185:16221-16240	Msa1432910:five_prime_UTR	30.0%
GTAAGATAGGACATAATTGT+AGG	-	tig0027185:14549-14568	Msa1432910:exon	30.0%
TATACCTTTCTTTCTCTCTT+GGG	+	tig0027185:14816-14835	None:intergenic	30.0%
ATATACCTTTCTTTCTCTCT+TGG	+	tig0027185:14817-14836	None:intergenic	30.0%
AATATGATATATTTGGCTGC+AGG	-	tig0027185:15788-15807	Msa1432910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027185	gene	14429	16255	14429	ID=Msa1432910;Name=Msa1432910
tig0027185	mRNA	14429	16255	14429	ID=Msa1432910-mRNA-1;Parent=Msa1432910;Name=Msa1432910-mRNA-1;_AED=0.11;_eAED=0.11;_QI=92\|1\|1\|1\|1\|1\|3\|125\|274
tig0027185	exon	14429	14874	14429	ID=Msa1432910-mRNA-1:exon:8376;Parent=Msa1432910-mRNA-1
tig0027185	exon	15168	15361	15168	ID=Msa1432910-mRNA-1:exon:8375;Parent=Msa1432910-mRNA-1
tig0027185	exon	15854	16255	15854	ID=Msa1432910-mRNA-1:exon:8374;Parent=Msa1432910-mRNA-1
tig0027185	five_prime_UTR	16164	16255	16164	ID=Msa1432910-mRNA-1:five_prime_utr;Parent=Msa1432910-mRNA-1
tig0027185	CDS	15854	16163	15854	ID=Msa1432910-mRNA-1:cds;Parent=Msa1432910-mRNA-1
tig0027185	CDS	15168	15361	15168	ID=Msa1432910-mRNA-1:cds;Parent=Msa1432910-mRNA-1
tig0027185	CDS	14554	14874	14554	ID=Msa1432910-mRNA-1:cds;Parent=Msa1432910-mRNA-1
tig0027185	three_prime_UTR	14429	14553	14429	ID=Msa1432910-mRNA-1:three_prime_utr;Parent=Msa1432910-mRNA-1

Gene Sequence

>Msa1432910

ATGGGGAGAAGAAAGTGTTCGCATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACTACCCTTGGAGGACTTCGTCTCTTTGGGGTCCAACTATCATCATCCTCCTCGTCATCATCTAGTACCATGATCAAGAAAAGCTTTAGCATGGACACCTTTCCCTCACCATCCTCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATGAAAATTATTATCACAAACCCACTTCTAATATTTCATATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGAAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGATTAGAGAAGCTAGGAAAAGGAGACTGGAGAGGCATCTCTAAAAACTTTGTCACTTCAAGAACCCCTACACAAGTCGCTAGCCATGCTCAAAAATACTTTCTTAGATTGGCTACTATCAACAAGAAGCGACGTTCAAGTCTCTTCGACTTGGTTGGGAGCAAGAACACCAACACAAAAGAACAAGGGTATGCTAATTCAGTAGTAAATTTGGGTCATAAATTTGAGGATAAGTGTAAATGTGAAGTTGAGATGAATGATGGCACCACTTTGTCCTACTTTAAACAAGAAGAAGCAGCCAAATCAGAAAAGCAAGAAAATAATTACTCTACAGATAATTGGCTACATGACTCTTCAAATTGTGCAGCAGTGCCTAATTTGGACCTCACACTTTCAGTTGCATCCCCTAAGCTTGAACAAAATCAACCCTCCCCTGCTGGCTCATTCCTTCTTGGCCCAATTAGCGTCACTTAA

Protein sequence

>Msa1432910

MGRRKCSHCGKIGHNCRTCTSFTTLGGLRLFGVQLSSSSSSSSSTMIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDENYYHKPTSNISYLSDCFIGPPQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFLRLATINKKRRSSLFDLVGSKNTNTKEQGYANSVVNLGHKFEDKCKCEVEMNDGTTLSYFKQEEAAKSEKQENNYSTDNWLHDSSNCAAVPNLDLTLSVASPKLEQNQPSPAGSFLLGPISVT*