Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135090 | XP_013469843.1 | 98.962 | 578 | 6 | 0 | 1 | 578 | 1 | 578 | 0.0 | 1191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135090 | sp|Q9STS3|CDC23_ARATH | 74.439 | 579 | 145 | 3 | 1 | 577 | 1 | 578 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135090 | A0A072VQG1 | 98.962 | 578 | 6 | 0 | 1 | 578 | 1 | 578 | 0.0 | 1191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040400 | Msa0135090 | 0.802012 | 6.865152e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135090 | MtrunA17_Chr1g0205411 | 98.962 | 578 | 6 | 0 | 1 | 578 | 1 | 578 | 0.0 | 1191 |
| Msa0135090 | MtrunA17_Chr8g0344341 | 86.528 | 579 | 73 | 4 | 1 | 577 | 1 | 576 | 0.0 | 1047 |
| Msa0135090 | MtrunA17_Chr8g0356451 | 75.862 | 87 | 21 | 0 | 418 | 504 | 1 | 87 | 1.26e-41 | 145 |
| Msa0135090 | MtrunA17_Chr6g0456451 | 30.035 | 283 | 189 | 3 | 213 | 495 | 411 | 684 | 6.27e-29 | 122 |
| Msa0135090 | MtrunA17_Chr7g0221321 | 29.221 | 308 | 200 | 5 | 240 | 545 | 434 | 725 | 9.54e-28 | 118 |
| Msa0135090 | MtrunA17_Chr8g0356461 | 76.562 | 64 | 14 | 1 | 516 | 578 | 1 | 64 | 3.11e-27 | 104 |
| Msa0135090 | MtrunA17_Chr2g0286231 | 25.095 | 263 | 194 | 3 | 233 | 495 | 211 | 470 | 7.59e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135090 | AT3G48150.1 | 74.439 | 579 | 145 | 3 | 1 | 577 | 1 | 578 | 0.0 | 917 |
| Msa0135090 | AT3G48150.2 | 75.269 | 465 | 114 | 1 | 114 | 577 | 1 | 465 | 0.0 | 752 |
| Msa0135090 | AT2G20000.1 | 27.476 | 313 | 216 | 3 | 254 | 564 | 434 | 737 | 2.56e-27 | 117 |
| Msa0135090 | AT3G16320.1 | 30.385 | 260 | 171 | 3 | 241 | 495 | 401 | 655 | 1.02e-24 | 109 |
| Msa0135090 | AT3G16320.2 | 30.385 | 260 | 171 | 3 | 241 | 495 | 390 | 644 | 1.03e-24 | 109 |
| Msa0135090 | AT2G20000.2 | 33.155 | 187 | 125 | 0 | 254 | 440 | 434 | 620 | 1.26e-24 | 108 |
| Msa0135090 | AT3G16320.3 | 32.639 | 144 | 95 | 1 | 241 | 382 | 390 | 533 | 9.97e-16 | 80.9 |
| Msa0135090 | AT3G16320.4 | 32.639 | 144 | 95 | 1 | 241 | 382 | 401 | 544 | 1.01e-15 | 80.9 |
Find 123 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAATCTTGTTGTATTAT+TGG | 0.082834 | 1_3:+66644971 | Msa0135090:CDS |
| CCTTTCTTCTATTCTATAAT+TGG | 0.134987 | 1_3:+66646050 | Msa0135090:three_prime_UTR |
| TCTCTCTGCTTGGACACTTA+TGG | 0.199975 | 1_3:+66645072 | Msa0135090:CDS |
| TGGGAATTATTACAGTTTAA+AGG | 0.204204 | 1_3:+66644991 | Msa0135090:CDS |
| CTGAATCTTGTTGTATTATT+GGG | 0.236148 | 1_3:+66644972 | Msa0135090:CDS |
| CTCTCTGCTTGGACACTTAT+GGG | 0.273049 | 1_3:+66645073 | Msa0135090:CDS |
| TTCTGCTCCAGCACAAAGTA+TGG | 0.276789 | 1_3:-66645871 | None:intergenic |
| TATCAGTCATGAATACTCTA+TGG | 0.285092 | 1_3:-66644940 | None:intergenic |
| GGGAATTATTACAGTTTAAA+GGG | 0.286813 | 1_3:+66644992 | Msa0135090:CDS |
| GAATATTTACTCGGAACTTT+TGG | 0.289586 | 1_3:+66644737 | Msa0135090:CDS |
| ACAGAAAGGCAATGATAATT+TGG | 0.300674 | 1_3:+66644523 | Msa0135090:CDS |
| TGCTTCATCAAAAGACATTA+TGG | 0.318712 | 1_3:-66645805 | None:intergenic |
| CATGTTCTTCGTGATCAAAT+TGG | 0.320943 | 1_3:+66642260 | Msa0135090:CDS |
| GTATATTGCTACTCCGGTTA+TGG | 0.327475 | 1_3:+66642157 | Msa0135090:CDS |
| ATAATTGGATAAACAGATTA+GGG | 0.332584 | 1_3:+66646065 | Msa0135090:three_prime_UTR |
| AAGATCTTATGCTCTCTATC+TGG | 0.346201 | 1_3:+66642301 | Msa0135090:CDS |
| TAAAAGTGATGCGGTGAATC+AGG | 0.366270 | 1_3:+66644409 | Msa0135090:CDS |
| CCAATAATACAACAAGATTC+AGG | 0.368422 | 1_3:-66644971 | None:intergenic |
| GATGATAGAACTTGAGGGTC+TGG | 0.368699 | 1_3:+66644385 | Msa0135090:CDS |
| ATCCACAGTCGGGAATCATT+TGG | 0.376499 | 1_3:-66645268 | None:intergenic |
| TATAATTGGATAAACAGATT+AGG | 0.376980 | 1_3:+66646064 | Msa0135090:three_prime_UTR |
| AAGTAATGAAGCGCGTATAA+AGG | 0.384843 | 1_3:-66645223 | None:intergenic |
| CAAACTCTTTCAAACTGTAC+TGG | 0.393647 | 1_3:-66644796 | None:intergenic |
| CCTCATCGAGCTTGCGAAGC+TGG | 0.400023 | 1_3:-66645318 | None:intergenic |
| ACAATGACAACGCCGATTGC+AGG | 0.406835 | 1_3:+66642128 | Msa0135090:CDS |
| GCAAAGCTGCATTCAGAGTT+GGG | 0.408786 | 1_3:+66645406 | Msa0135090:CDS |
| TGTGATTATCGTGCTTTGTA+TGG | 0.409421 | 1_3:+66645169 | Msa0135090:CDS |
| TCCACAGTCGGGAATCATTT+GGG | 0.420700 | 1_3:-66645267 | None:intergenic |
| ACCATATAAGTACAAACAAA+AGG | 0.420898 | 1_3:-66644489 | None:intergenic |
| GAGGATGGAATCTGAAGAGA+GGG | 0.426699 | 1_3:+66645471 | Msa0135090:CDS |
| TTCATTCCCATACTTTGTGC+TGG | 0.431667 | 1_3:+66645864 | Msa0135090:three_prime_UTR |
| TGATGCGGTGAATCAGGAAT+TGG | 0.435489 | 1_3:+66644415 | Msa0135090:CDS |
| AATATCAACTGAAGTGCATA+AGG | 0.439777 | 1_3:-66644615 | None:intergenic |
| GTCTCTATTCCGCTTCCAAA+TGG | 0.440463 | 1_3:+66641883 | Msa0135090:CDS |
| ACTTCATCCTCTTCCATAAC+CGG | 0.445613 | 1_3:-66642170 | None:intergenic |
| TAAATAGCTACCCTTGGAAC+TGG | 0.448123 | 1_3:+66644570 | Msa0135090:CDS |
| TGCAAAGCTGCATTCAGAGT+TGG | 0.452965 | 1_3:+66645405 | Msa0135090:CDS |
| GTCTTAATGTCAGTAGTCAT+TGG | 0.455741 | 1_3:+66644645 | Msa0135090:CDS |
| ACCCTTGGAACTGGAATGCC+TGG | 0.456175 | 1_3:+66644579 | Msa0135090:CDS |
| AGGAATTGGTTTCTTTAGAG+AGG | 0.470455 | 1_3:+66644429 | Msa0135090:CDS |
| AGGGCATCAAACTGTGATGA+TGG | 0.471291 | 1_3:+66645358 | Msa0135090:CDS |
| TTGTGCTGGAGCAGAACTAA+TGG | 0.471529 | 1_3:+66645878 | Msa0135090:three_prime_UTR |
| GGGCTTTAGCAATTTGAGCT+TGG | 0.481121 | 1_3:-66644775 | None:intergenic |
| AGCAAAGCCTCAATCATGTT+AGG | 0.482273 | 1_3:-66645499 | None:intergenic |
| TGCTACTCCGGTTATGGAAG+AGG | 0.488185 | 1_3:+66642163 | Msa0135090:CDS |
| TTGTCTACACTCCGCAAGAA+TGG | 0.490832 | 1_3:+66644455 | Msa0135090:CDS |
| CAGAAAGGATTTAGAGAGGA+TGG | 0.495031 | 1_3:+66645456 | Msa0135090:CDS |
| CCAATTATAGAATAGAAGAA+AGG | 0.496948 | 1_3:-66646050 | None:intergenic |
| CTGCTGTGAATGCCTATCGT+CGG | 0.496961 | 1_3:+66645128 | Msa0135090:CDS |
| ACACGTCTTCTCGATTATAC+TGG | 0.497476 | 1_3:+66645580 | Msa0135090:CDS |
| AGAGGATGGAATCTGAAGAG+AGG | 0.500780 | 1_3:+66645470 | Msa0135090:CDS |
| TCCATGTCTTCCACTCTGTA+AGG | 0.501402 | 1_3:-66644860 | None:intergenic |
| TGCTGTGAATGCCTATCGTC+GGG | 0.506475 | 1_3:+66645129 | Msa0135090:CDS |
| CTCCAATGTGCTTTATGCTA+AGG | 0.506539 | 1_3:+66644889 | Msa0135090:CDS |
| GAAGAGATGATAGAACTTGA+GGG | 0.512391 | 1_3:+66644380 | Msa0135090:CDS |
| GGAAGAGATGATAGAACTTG+AGG | 0.513786 | 1_3:+66644379 | Msa0135090:CDS |
| TGTCAGTAGTCATTGGATGA+AGG | 0.516391 | 1_3:+66644652 | Msa0135090:CDS |
| CCATATAAGTACAAACAAAA+GGG | 0.518291 | 1_3:-66644488 | None:intergenic |
| ATGATAGAACTTGAGGGTCT+GGG | 0.520445 | 1_3:+66644386 | Msa0135090:CDS |
| TGGACTAGGACAAGCTTATG+AGG | 0.520816 | 1_3:+66645189 | Msa0135090:CDS |
| GGGCATCAAACTGTGATGAT+GGG | 0.526275 | 1_3:+66645359 | Msa0135090:CDS |
| TAAGGATTGCAGCTCAGTCC+AGG | 0.528177 | 1_3:-66644597 | None:intergenic |
| TTCGAAGGCGTGAATTTCGA+TGG | 0.532573 | 1_3:-66642047 | None:intergenic |
| AAACTCTTTCAAACTGTACT+GGG | 0.534937 | 1_3:-66644795 | None:intergenic |
| TAAGGGATTAGACAGCATAA+AGG | 0.534939 | 1_3:+66646110 | Msa0135090:three_prime_UTR |
| AGGGCGGCGGAGCAATTGCT+AGG | 0.535249 | 1_3:+66642008 | Msa0135090:intron |
| AGCCATTGCTATCCACAGTC+GGG | 0.535467 | 1_3:-66645278 | None:intergenic |
| TTTGGCGCGTACAGTTCTTG+TGG | 0.535552 | 1_3:+66644541 | Msa0135090:CDS |
| CGATAGGCATTCACAGCAGC+GGG | 0.537165 | 1_3:-66645124 | None:intergenic |
| GTCCAGGCATTCCAGTTCCA+AGG | 0.545231 | 1_3:-66644581 | None:intergenic |
| GGAAAGTGCTCAACATCCGC+TGG | 0.547287 | 1_3:-66645781 | None:intergenic |
| GGAATTGGTTTCTTTAGAGA+GGG | 0.550127 | 1_3:+66644430 | Msa0135090:CDS |
| TATCGTGCTTTGTATGGACT+AGG | 0.552484 | 1_3:+66645175 | Msa0135090:CDS |
| GATCTATTGTTCCATTCTTG+CGG | 0.552490 | 1_3:-66644466 | None:intergenic |
| TGAAATATACCATTTGGAAG+CGG | 0.554816 | 1_3:-66641892 | None:intergenic |
| TGTTTCGTATATTGCTACTC+CGG | 0.555633 | 1_3:+66642151 | Msa0135090:CDS |
| AATCTGTAAATAGCTACCCT+TGG | 0.556259 | 1_3:+66644564 | Msa0135090:CDS |
| GGCAGGAGAAAAGCGAAAAG+AGG | 0.563435 | 1_3:+66644358 | Msa0135090:intron |
| GCAGAAGCAGATGAGTTCAA+AGG | 0.564871 | 1_3:+66641809 | Msa0135090:exon |
| ATCAGTCATGAATACTCTAT+GGG | 0.566494 | 1_3:-66644939 | None:intergenic |
| ATATACGAAACACCTGCAAT+CGG | 0.567580 | 1_3:-66642140 | None:intergenic |
| ACTCTGAATGCAGCTTTGCA+AGG | 0.569872 | 1_3:-66645402 | None:intergenic |
| GTCTACTAGTTAGTGCAGCA+TGG | 0.570197 | 1_3:-66645956 | None:intergenic |
| CGCTGAAACCTCGTATTCGA+AGG | 0.578774 | 1_3:-66642062 | None:intergenic |
| GGAATTATTACAGTTTAAAG+GGG | 0.578878 | 1_3:+66644993 | Msa0135090:CDS |
| GGTCTAATACTGAAACAGAA+AGG | 0.579233 | 1_3:+66644509 | Msa0135090:CDS |
| TATTTCAACAGCCCGACGAT+AGG | 0.582252 | 1_3:-66645140 | None:intergenic |
| AGAGTTGGGACGCACTGAAG+AGG | 0.583415 | 1_3:+66645420 | Msa0135090:CDS |
| GAGCCATTGCTATCCACAGT+CGG | 0.589081 | 1_3:-66645279 | None:intergenic |
| TCAAAATATGAATATTTACT+CGG | 0.590894 | 1_3:+66644728 | Msa0135090:CDS |
| TCCTTACAGAGTGGAAGACA+TGG | 0.592201 | 1_3:+66644859 | Msa0135090:CDS |
| TTCCTTAGCATAAAGCACAT+TGG | 0.592234 | 1_3:-66644891 | None:intergenic |
| TCTGCTCCAGCACAAAGTAT+GGG | 0.592889 | 1_3:-66645870 | None:intergenic |
| GAGAAGAACTGAAGAAGCAG+AGG | 0.594801 | 1_3:+66645549 | Msa0135090:CDS |
| GAAGAGGATGAAGTTGTTGA+CGG | 0.594806 | 1_3:+66642179 | Msa0135090:CDS |
| TCATTGTAATCTCATGAGTA+CGG | 0.594829 | 1_3:-66642112 | None:intergenic |
| AGGCAATAAAGTGTTACAGA+AGG | 0.600848 | 1_3:+66645338 | Msa0135090:CDS |
| TTGATGAAAATGCAGGGCGG+CGG | 0.604789 | 1_3:+66641995 | Msa0135090:intron |
| GGCAATAAAGTGTTACAGAA+GGG | 0.606652 | 1_3:+66645339 | Msa0135090:CDS |
| GGAAGGACCTAACATGATTG+AGG | 0.608692 | 1_3:+66645492 | Msa0135090:CDS |
| TCCAGGCATTCCAGTTCCAA+GGG | 0.610042 | 1_3:-66644580 | None:intergenic |
| GGCATCAAACTGTGATGATG+GGG | 0.611034 | 1_3:+66645360 | Msa0135090:CDS |
| AAGTGCTCAACATCCGCTGG+AGG | 0.612692 | 1_3:-66645778 | None:intergenic |
| ACTACAGAAAGGATTTAGAG+AGG | 0.616904 | 1_3:+66645452 | Msa0135090:CDS |
| ACAATCTAGTTTCCCTCCAG+CGG | 0.619234 | 1_3:+66645765 | Msa0135090:CDS |
| TTCCCGACTGTGGATAGCAA+TGG | 0.623157 | 1_3:+66645276 | Msa0135090:CDS |
| TCATGAATACTCTATGGGCA+AGG | 0.627413 | 1_3:-66644934 | None:intergenic |
| GAGCAGCTCTCTTATACTCA+CGG | 0.629368 | 1_3:-66642238 | None:intergenic |
| AGTGCTCAACATCCGCTGGA+GGG | 0.630408 | 1_3:-66645777 | None:intergenic |
| TACAAAGCACGATAATCACA+CGG | 0.635868 | 1_3:-66645166 | None:intergenic |
| CTATATTTGAAGAACTGCTG+AGG | 0.641049 | 1_3:+66644831 | Msa0135090:CDS |
| AATTCACGCCTTCGAATACG+AGG | 0.641925 | 1_3:+66642054 | Msa0135090:CDS |
| GTGGAAGTTCAAGTATTCGT+CGG | 0.649300 | 1_3:+66642084 | Msa0135090:CDS |
| CCAGCTTCGCAAGCTCGATG+AGG | 0.649439 | 1_3:+66645318 | Msa0135090:CDS |
| ATGGAATCTGAAGAGAGGGA+AGG | 0.651788 | 1_3:+66645475 | Msa0135090:CDS |
| GCTGGAGGGAAACTAGATTG+TGG | 0.669682 | 1_3:-66645763 | None:intergenic |
| TTCATCAAAAGACATTATGG+AGG | 0.673231 | 1_3:-66645802 | None:intergenic |
| ACGATAGGCATTCACAGCAG+CGG | 0.679646 | 1_3:-66645125 | None:intergenic |
| GAGGATTGATCCTTACAGAG+TGG | 0.688847 | 1_3:+66644850 | Msa0135090:CDS |
| ACCCAAATGATTCCCGACTG+TGG | 0.691891 | 1_3:+66645266 | Msa0135090:CDS |
| ACAAAGCACGATAATCACAC+GGG | 0.717331 | 1_3:-66645165 | None:intergenic |
| GGGTCTGGGTAAAAGTGATG+CGG | 0.758419 | 1_3:+66644400 | Msa0135090:CDS |
| TCGAATACGAGGTTTCAGCG+TGG | 0.759283 | 1_3:+66642065 | Msa0135090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAATAAATTATAATTAC+TGG | + | chr1_3:66642920-66642939 | Msa0135090:intron | 10.0% |
| !!! | TTTGAATTTTCTGTTTATAT+GGG | + | chr1_3:66642609-66642628 | Msa0135090:intron | 15.0% |
| !!! | TCAGATTTAATTTTAAAAGA+TGG | - | chr1_3:66643416-66643435 | None:intergenic | 15.0% |
| !!! | TATTAGAAATACCAATTTTA+AGG | - | chr1_3:66643548-66643567 | None:intergenic | 15.0% |
| !!! | CTTTTAAACAAAATGTTAAT+AGG | - | chr1_3:66643578-66643597 | None:intergenic | 15.0% |
| !!! | CTATTAACATTTTGTTTAAA+AGG | + | chr1_3:66643576-66643595 | Msa0135090:intron | 15.0% |
| !! | TTTCAAAAATAACTAAAAAG+CGG | - | chr1_3:66643849-66643868 | None:intergenic | 15.0% |
| !! | TCAAAATATGAATATTTACT+CGG | + | chr1_3:66644728-66644747 | Msa0135090:CDS | 15.0% |
| !! | ACTTTGATTATTAAATGATT+TGG | - | chr1_3:66645690-66645709 | None:intergenic | 15.0% |
| !!! | TACATTTTTACAAAATCAAA+CGG | - | chr1_3:66646092-66646111 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGTAAAAATGTA+AGG | + | chr1_3:66646092-66646111 | Msa0135090:three_prime_UTR | 15.0% |
| !!! | TTGATTTTGTAAAAATGTAA+GGG | + | chr1_3:66646093-66646112 | Msa0135090:three_prime_UTR | 15.0% |
| !! | AGGAATAGATATTTAGATTA+GGG | - | chr1_3:66641930-66641949 | None:intergenic | 20.0% |
| !! | AAGGAATAGATATTTAGATT+AGG | - | chr1_3:66641931-66641950 | None:intergenic | 20.0% |
| !!! | GAAATTATTTTTACCAACAT+TGG | + | chr1_3:66642364-66642383 | Msa0135090:intron | 20.0% |
| !!! | TTTTATAATGTCAAATGCAT+TGG | + | chr1_3:66642539-66642558 | Msa0135090:intron | 20.0% |
| !!! | GTTTGAATTTTCTGTTTATA+TGG | + | chr1_3:66642608-66642627 | Msa0135090:intron | 20.0% |
| !! | ATTAACACAAACTTTAGTAA+CGG | + | chr1_3:66642676-66642695 | Msa0135090:intron | 20.0% |
| !! | AAACGTTACTTGATATATTT+AGG | + | chr1_3:66642880-66642899 | Msa0135090:intron | 20.0% |
| !! | TCAAATCAAATAAAAGAGAA+TGG | - | chr1_3:66643222-66643241 | None:intergenic | 20.0% |
| !!! | TCTTTTATTTGATTTGAGTT+GGG | + | chr1_3:66643225-66643244 | Msa0135090:intron | 20.0% |
| !!! | TACTTTCCAAGTTTTATTTA+CGG | - | chr1_3:66643715-66643734 | None:intergenic | 20.0% |
| !!! | GAAAAAAATCTTTTCGAAAA+GGG | - | chr1_3:66644053-66644072 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATCTTTTCGAAA+AGG | - | chr1_3:66644054-66644073 | None:intergenic | 20.0% |
| !! | TCTAAATGAAGATAATACAT+TGG | + | chr1_3:66644175-66644194 | Msa0135090:intron | 20.0% |
| !! | CTAAATGAAGATAATACATT+GGG | + | chr1_3:66644176-66644195 | Msa0135090:intron | 20.0% |
| !!! | ATAATTTTTGTCCAGTTTAA+GGG | - | chr1_3:66645053-66645072 | None:intergenic | 20.0% |
| !!! | GTTAAATATTTTTTACTCAC+AGG | - | chr1_3:66645607-66645626 | None:intergenic | 20.0% |
| !! | TATAATTGGATAAACAGATT+AGG | + | chr1_3:66646064-66646083 | Msa0135090:three_prime_UTR | 20.0% |
| !! | ATAATTGGATAAACAGATTA+GGG | + | chr1_3:66646065-66646084 | Msa0135090:three_prime_UTR | 20.0% |
| !! | GAAGTTTGAAATATACCATT+TGG | - | chr1_3:66641901-66641920 | None:intergenic | 25.0% |
| !!! | TATTTTTACCAACATTGGAT+TGG | + | chr1_3:66642369-66642388 | Msa0135090:intron | 25.0% |
| !!! | ATTTGAATTTGATTTCTAGC+TGG | + | chr1_3:66642408-66642427 | Msa0135090:intron | 25.0% |
| ! | TTAACTCCTTAAATAGATCT+CGG | + | chr1_3:66642461-66642480 | Msa0135090:intron | 25.0% |
| ! | TACATTATACACGAAATTGT+TGG | + | chr1_3:66642506-66642525 | Msa0135090:intron | 25.0% |
| ! | ACTTTGATGTAGTAGTATTA+TGG | + | chr1_3:66642582-66642601 | Msa0135090:intron | 25.0% |
| !! | TGTGTTTACTTCAATTTTTG+TGG | + | chr1_3:66642736-66642755 | Msa0135090:intron | 25.0% |
| !! | GTGTTTACTTCAATTTTTGT+GGG | + | chr1_3:66642737-66642756 | Msa0135090:intron | 25.0% |
| !! | ATTTTGTTGAGTTCCATTTT+GGG | + | chr1_3:66642826-66642845 | Msa0135090:intron | 25.0% |
| ! | AAAGCATATGTTGTCAATAA+TGG | - | chr1_3:66643086-66643105 | None:intergenic | 25.0% |
| ! | AATTCCTATAATTGTTGAAG+TGG | + | chr1_3:66643135-66643154 | Msa0135090:intron | 25.0% |
| ! | ATTCCTATAATTGTTGAAGT+GGG | + | chr1_3:66643136-66643155 | Msa0135090:intron | 25.0% |
| !!! | CTCTTTTATTTGATTTGAGT+TGG | + | chr1_3:66643224-66643243 | Msa0135090:intron | 25.0% |
| !!! | TATGACCTTCTTTAATTTGA+AGG | - | chr1_3:66643392-66643411 | None:intergenic | 25.0% |
| ! | GTAAATAAAACTTGGAAAGT+AGG | + | chr1_3:66643714-66643733 | Msa0135090:intron | 25.0% |
| !! | TATATTCAAGTTAAAGCATG+AGG | + | chr1_3:66643823-66643842 | Msa0135090:intron | 25.0% |
| !!! | TTGAAAGAACTGAGTTTTTT+TGG | + | chr1_3:66644281-66644300 | Msa0135090:intron | 25.0% |
| !!! | TGAAAGAACTGAGTTTTTTT+GGG | + | chr1_3:66644282-66644301 | Msa0135090:intron | 25.0% |
| ! | CCATATAAGTACAAACAAAA+GGG | - | chr1_3:66644491-66644510 | None:intergenic | 25.0% |
| ! | ACCATATAAGTACAAACAAA+AGG | - | chr1_3:66644492-66644511 | None:intergenic | 25.0% |
| !! | CTGAATCTTGTTGTATTATT+GGG | + | chr1_3:66644972-66644991 | Msa0135090:CDS | 25.0% |
| ! | TGGGAATTATTACAGTTTAA+AGG | + | chr1_3:66644991-66645010 | Msa0135090:CDS | 25.0% |
| ! | GGGAATTATTACAGTTTAAA+GGG | + | chr1_3:66644992-66645011 | Msa0135090:CDS | 25.0% |
| ! | GGAATTATTACAGTTTAAAG+GGG | + | chr1_3:66644993-66645012 | Msa0135090:CDS | 25.0% |
| !! | GATAATTTTTGTCCAGTTTA+AGG | - | chr1_3:66645054-66645073 | None:intergenic | 25.0% |
| ! | CCAATTATAGAATAGAAGAA+AGG | - | chr1_3:66646053-66646072 | None:intergenic | 25.0% |
| ! | CCTTTCTTCTATTCTATAAT+TGG | + | chr1_3:66646050-66646069 | Msa0135090:three_prime_UTR | 25.0% |
| TGAAATATACCATTTGGAAG+CGG | - | chr1_3:66641895-66641914 | None:intergenic | 30.0% | |
| ! | TTTCGTATTGATGAAAATGC+AGG | + | chr1_3:66641988-66642007 | Msa0135090:intron | 30.0% |
| ! | TTCGTATTGATGAAAATGCA+GGG | + | chr1_3:66641989-66642008 | Msa0135090:intron | 30.0% |
| TCATTGTAATCTCATGAGTA+CGG | - | chr1_3:66642115-66642134 | None:intergenic | 30.0% | |
| ! | TGACGGTGATTTTTATCTTT+TGG | + | chr1_3:66642196-66642215 | Msa0135090:CDS | 30.0% |
| TTGGAAAAACATATGTTGTG+AGG | + | chr1_3:66642436-66642455 | Msa0135090:intron | 30.0% | |
| TGGAAAAACATATGTTGTGA+GGG | + | chr1_3:66642437-66642456 | Msa0135090:intron | 30.0% | |
| TAACTCCTTAAATAGATCTC+GGG | + | chr1_3:66642462-66642481 | Msa0135090:intron | 30.0% | |
| TGGAGTTCTTATGTTTATTG+TGG | + | chr1_3:66642559-66642578 | Msa0135090:intron | 30.0% | |
| ! | GATTTTGTTGAGTTCCATTT+TGG | + | chr1_3:66642825-66642844 | Msa0135090:intron | 30.0% |
| ! | TTTTGTTGAGTTCCATTTTG+GGG | + | chr1_3:66642827-66642846 | Msa0135090:intron | 30.0% |
| TTCCTATAATTGTTGAAGTG+GGG | + | chr1_3:66643137-66643156 | Msa0135090:intron | 30.0% | |
| TTAAATCTGATTAGTGCTGT+TGG | + | chr1_3:66643426-66643445 | Msa0135090:intron | 30.0% | |
| !!! | CCAGAGTTTTAACTTTTACT+GGG | - | chr1_3:66643514-66643533 | None:intergenic | 30.0% |
| ATATTACACACACAACTTCA+TGG | - | chr1_3:66643613-66643632 | None:intergenic | 30.0% | |
| TCTTAAAAACATTCTGCTTC+AGG | - | chr1_3:66643786-66643805 | None:intergenic | 30.0% | |
| !! | GAAATTACTGAGTTTGCTAT+TGG | - | chr1_3:66643939-66643958 | None:intergenic | 30.0% |
| !!! | AGATTTTTTTCTGCCTCTTA+TGG | + | chr1_3:66644062-66644081 | Msa0135090:intron | 30.0% |
| TTGACAAAACTAACCATAAG+AGG | - | chr1_3:66644078-66644097 | None:intergenic | 30.0% | |
| AGAAAACGTGAGAAGTTAAA+TGG | - | chr1_3:66644146-66644165 | None:intergenic | 30.0% | |
| !!! | GAAAGAACTGAGTTTTTTTG+GGG | + | chr1_3:66644283-66644302 | Msa0135090:intron | 30.0% |
| !! | CCCTTTTGTTTGTACTTATA+TGG | + | chr1_3:66644488-66644507 | Msa0135090:CDS | 30.0% |
| ACAGAAAGGCAATGATAATT+TGG | + | chr1_3:66644523-66644542 | Msa0135090:CDS | 30.0% | |
| AATATCAACTGAAGTGCATA+AGG | - | chr1_3:66644618-66644637 | None:intergenic | 30.0% | |
| !! | CATTATGCATCCTTAGTTTT+TGG | - | chr1_3:66644700-66644719 | None:intergenic | 30.0% |
| ! | GAATATTTACTCGGAACTTT+TGG | + | chr1_3:66644737-66644756 | Msa0135090:CDS | 30.0% |
| AAACTCTTTCAAACTGTACT+GGG | - | chr1_3:66644798-66644817 | None:intergenic | 30.0% | |
| ATCAGTCATGAATACTCTAT+GGG | - | chr1_3:66644942-66644961 | None:intergenic | 30.0% | |
| TATCAGTCATGAATACTCTA+TGG | - | chr1_3:66644943-66644962 | None:intergenic | 30.0% | |
| CCAATAATACAACAAGATTC+AGG | - | chr1_3:66644974-66644993 | None:intergenic | 30.0% | |
| ! | CCTGAATCTTGTTGTATTAT+TGG | + | chr1_3:66644971-66644990 | Msa0135090:CDS | 30.0% |
| ACAAAAATTATCTCTCTGCT+TGG | + | chr1_3:66645062-66645081 | Msa0135090:CDS | 30.0% | |
| ATAATCAAAGTCATGCTTTC+AGG | + | chr1_3:66645699-66645718 | Msa0135090:intron | 30.0% | |
| ACTGCAAAAAGTTTACTTAG+AGG | + | chr1_3:66645730-66645749 | Msa0135090:CDS | 30.0% | |
| TTCATCAAAAGACATTATGG+AGG | - | chr1_3:66645805-66645824 | None:intergenic | 30.0% | |
| TGCTTCATCAAAAGACATTA+TGG | - | chr1_3:66645808-66645827 | None:intergenic | 30.0% | |
| ! | TTTTGTTCAAAGTAGTGATC+TGG | + | chr1_3:66645994-66646013 | Msa0135090:three_prime_UTR | 30.0% |
| AAATGAAACGTCGTCGTTTA+AGG | - | chr1_3:66641971-66641990 | None:intergenic | 35.0% | |
| ATATACGAAACACCTGCAAT+CGG | - | chr1_3:66642143-66642162 | None:intergenic | 35.0% | |
| TGTTTCGTATATTGCTACTC+CGG | + | chr1_3:66642151-66642170 | Msa0135090:CDS | 35.0% | |
| CATGTTCTTCGTGATCAAAT+TGG | + | chr1_3:66642260-66642279 | Msa0135090:CDS | 35.0% | |
| AAGATCTTATGCTCTCTATC+TGG | + | chr1_3:66642301-66642320 | Msa0135090:CDS | 35.0% | |
| ACAATGTACCAATCCAATGT+TGG | - | chr1_3:66642380-66642399 | None:intergenic | 35.0% | |
| !! | AACATTGGATTGGTACATTG+TGG | + | chr1_3:66642379-66642398 | Msa0135090:intron | 35.0% |
| CTAATCCCGAGATCTATTTA+AGG | - | chr1_3:66642470-66642489 | None:intergenic | 35.0% | |
| ! | TTTTGTGGGAAAGTCTGTTT+TGG | + | chr1_3:66642751-66642770 | Msa0135090:intron | 35.0% |
| ! | TTTGTGGGAAAGTCTGTTTT+GGG | + | chr1_3:66642752-66642771 | Msa0135090:intron | 35.0% |
| ! | TTTGTTGAGTTCCATTTTGG+GGG | + | chr1_3:66642828-66642847 | Msa0135090:intron | 35.0% |
| AACCCCACTTCAACAATTAT+AGG | - | chr1_3:66643142-66643161 | None:intergenic | 35.0% | |
| ACATCTTAGACTTGACATGA+GGG | - | chr1_3:66643309-66643328 | None:intergenic | 35.0% | |
| TGCTGCCTTCAAATTAAAGA+AGG | + | chr1_3:66643384-66643403 | Msa0135090:intron | 35.0% | |
| CCCAGTAAAAGTTAAAACTC+TGG | + | chr1_3:66643511-66643530 | Msa0135090:intron | 35.0% | |
| !!! | GCCAGAGTTTTAACTTTTAC+TGG | - | chr1_3:66643515-66643534 | None:intergenic | 35.0% |
| GTAAAAGTTAAAACTCTGGC+TGG | + | chr1_3:66643515-66643534 | Msa0135090:intron | 35.0% | |
| CGTCTTCCGTAAATAAAACT+TGG | + | chr1_3:66643706-66643725 | Msa0135090:intron | 35.0% | |
| GACATGACTAATAGCATAAG+AGG | - | chr1_3:66644115-66644134 | None:intergenic | 35.0% | |
| CTAATAGCACAAACAACTCA+TGG | + | chr1_3:66644211-66644230 | Msa0135090:intron | 35.0% | |
| !!! | ACTGAGTTTTTTTGGGGTTT+TGG | + | chr1_3:66644289-66644308 | Msa0135090:intron | 35.0% |
| GAAGAGATGATAGAACTTGA+GGG | + | chr1_3:66644380-66644399 | Msa0135090:CDS | 35.0% | |
| ! | AGGAATTGGTTTCTTTAGAG+AGG | + | chr1_3:66644429-66644448 | Msa0135090:CDS | 35.0% |
| ! | GGAATTGGTTTCTTTAGAGA+GGG | + | chr1_3:66644430-66644449 | Msa0135090:CDS | 35.0% |
| GATCTATTGTTCCATTCTTG+CGG | - | chr1_3:66644469-66644488 | None:intergenic | 35.0% | |
| GGTCTAATACTGAAACAGAA+AGG | + | chr1_3:66644509-66644528 | Msa0135090:CDS | 35.0% | |
| AATCTGTAAATAGCTACCCT+TGG | + | chr1_3:66644564-66644583 | Msa0135090:CDS | 35.0% | |
| GTCTTAATGTCAGTAGTCAT+TGG | + | chr1_3:66644645-66644664 | Msa0135090:CDS | 35.0% | |
| CAAACTCTTTCAAACTGTAC+TGG | - | chr1_3:66644799-66644818 | None:intergenic | 35.0% | |
| CTATATTTGAAGAACTGCTG+AGG | + | chr1_3:66644831-66644850 | Msa0135090:CDS | 35.0% | |
| TTCCTTAGCATAAAGCACAT+TGG | - | chr1_3:66644894-66644913 | None:intergenic | 35.0% | |
| ! | TATGCTAAGGAATGCTTTTC+TGG | + | chr1_3:66644902-66644921 | Msa0135090:CDS | 35.0% |
| !! | TTTTAAGAGAGCCCTTAAAC+TGG | + | chr1_3:66645039-66645058 | Msa0135090:CDS | 35.0% |
| TACAAAGCACGATAATCACA+CGG | - | chr1_3:66645169-66645188 | None:intergenic | 35.0% | |
| TGTGATTATCGTGCTTTGTA+TGG | + | chr1_3:66645169-66645188 | Msa0135090:CDS | 35.0% | |
| AAGTAATGAAGCGCGTATAA+AGG | - | chr1_3:66645226-66645245 | None:intergenic | 35.0% | |
| ! | AGGCAATAAAGTGTTACAGA+AGG | + | chr1_3:66645338-66645357 | Msa0135090:CDS | 35.0% |
| ! | GGCAATAAAGTGTTACAGAA+GGG | + | chr1_3:66645339-66645358 | Msa0135090:CDS | 35.0% |
| ACTACAGAAAGGATTTAGAG+AGG | + | chr1_3:66645452-66645471 | Msa0135090:CDS | 35.0% | |
| ! | AATGTCTTTTGATGAAGCAC+TGG | + | chr1_3:66645809-66645828 | Msa0135090:exon | 35.0% |
| ! | TGTGCTGCAATTTTCAACTT+TGG | + | chr1_3:66645835-66645854 | Msa0135090:three_prime_UTR | 35.0% |
| GGAATAGGGAAAATGAGAGA+AGG | - | chr1_3:66641950-66641969 | None:intergenic | 40.0% | |
| ACGTCGTCGTTTAAGGAATA+GGG | - | chr1_3:66641964-66641983 | None:intergenic | 40.0% | |
| AACGTCGTCGTTTAAGGAAT+AGG | - | chr1_3:66641965-66641984 | None:intergenic | 40.0% | |
| ! | GTATTGATGAAAATGCAGGG+CGG | + | chr1_3:66641992-66642011 | Msa0135090:intron | 40.0% |
| GTGGAAGTTCAAGTATTCGT+CGG | + | chr1_3:66642084-66642103 | Msa0135090:CDS | 40.0% | |
| GTATATTGCTACTCCGGTTA+TGG | + | chr1_3:66642157-66642176 | Msa0135090:CDS | 40.0% | |
| ACTTCATCCTCTTCCATAAC+CGG | - | chr1_3:66642173-66642192 | None:intergenic | 40.0% | |
| GAAGAGGATGAAGTTGTTGA+CGG | + | chr1_3:66642179-66642198 | Msa0135090:CDS | 40.0% | |
| !! | TGGATTGGTACATTGTGGTT+AGG | + | chr1_3:66642384-66642403 | Msa0135090:intron | 40.0% |
| !! | TGATTTCTAGCTGGTTCGTT+TGG | + | chr1_3:66642417-66642436 | Msa0135090:intron | 40.0% |
| ! | GGTGTGTATGTTGTGTTGAT+GGG | + | chr1_3:66642630-66642649 | Msa0135090:intron | 40.0% |
| ! | TTGTTGAGTTCCATTTTGGG+GGG | + | chr1_3:66642829-66642848 | Msa0135090:intron | 40.0% |
| AATCGCAAAAAGCTCAACTC+TGG | + | chr1_3:66642988-66643007 | Msa0135090:intron | 40.0% | |
| ATCGCAAAAAGCTCAACTCT+GGG | + | chr1_3:66642989-66643008 | Msa0135090:intron | 40.0% | |
| ACTGAGCATGTAGCAACATT+AGG | + | chr1_3:66643171-66643190 | Msa0135090:intron | 40.0% | |
| ACATTAGGCCAGAACATAGA+AGG | + | chr1_3:66643186-66643205 | Msa0135090:intron | 40.0% | |
| ATAGACTGCCTTCTATGTTC+TGG | - | chr1_3:66643197-66643216 | None:intergenic | 40.0% | |
| !! | ATTTGATTTGAGTTGGGTGC+AGG | + | chr1_3:66643231-66643250 | Msa0135090:intron | 40.0% |
| !! | TTTGATTTGAGTTGGGTGCA+GGG | + | chr1_3:66643232-66643251 | Msa0135090:intron | 40.0% |
| TACAATGAACAAAGCACACC+AGG | + | chr1_3:66643256-66643275 | Msa0135090:intron | 40.0% | |
| ACTGACATGTCATCTCTTCA+TGG | + | chr1_3:66643281-66643300 | Msa0135090:intron | 40.0% | |
| CACATCTTAGACTTGACATG+AGG | - | chr1_3:66643310-66643329 | None:intergenic | 40.0% | |
| ! | AGTGCTGTTGGAAAGTAAGT+TGG | + | chr1_3:66643438-66643457 | Msa0135090:intron | 40.0% |
| AAAACTTGGAAAGTAGGCAC+AGG | + | chr1_3:66643720-66643739 | Msa0135090:intron | 40.0% | |
| ! | CTGTTACACAAACTGACTTC+AGG | + | chr1_3:66643993-66644012 | Msa0135090:intron | 40.0% |
| GGAAGAGATGATAGAACTTG+AGG | + | chr1_3:66644379-66644398 | Msa0135090:CDS | 40.0% | |
| ATGATAGAACTTGAGGGTCT+GGG | + | chr1_3:66644386-66644405 | Msa0135090:CDS | 40.0% | |
| TAAAAGTGATGCGGTGAATC+AGG | + | chr1_3:66644409-66644428 | Msa0135090:CDS | 40.0% | |
| TAAATAGCTACCCTTGGAAC+TGG | + | chr1_3:66644570-66644589 | Msa0135090:CDS | 40.0% | |
| TGTCAGTAGTCATTGGATGA+AGG | + | chr1_3:66644652-66644671 | Msa0135090:CDS | 40.0% | |
| !!! | CCTTAGTTTTTGGTAGAGAC+TGG | - | chr1_3:66644690-66644709 | None:intergenic | 40.0% |
| CCAGTCTCTACCAAAAACTA+AGG | + | chr1_3:66644687-66644706 | Msa0135090:CDS | 40.0% | |
| CTCCAATGTGCTTTATGCTA+AGG | + | chr1_3:66644889-66644908 | Msa0135090:CDS | 40.0% | |
| TCATGAATACTCTATGGGCA+AGG | - | chr1_3:66644937-66644956 | None:intergenic | 40.0% | |
| ACAAAGCACGATAATCACAC+GGG | - | chr1_3:66645168-66645187 | None:intergenic | 40.0% | |
| TATCGTGCTTTGTATGGACT+AGG | + | chr1_3:66645175-66645194 | Msa0135090:CDS | 40.0% | |
| ! | GGCAGCATTTTACTACAGAA+AGG | + | chr1_3:66645441-66645460 | Msa0135090:CDS | 40.0% |
| CAGAAAGGATTTAGAGAGGA+TGG | + | chr1_3:66645456-66645475 | Msa0135090:CDS | 40.0% | |
| AGCAAAGCCTCAATCATGTT+AGG | - | chr1_3:66645502-66645521 | None:intergenic | 40.0% | |
| ACACGTCTTCTCGATTATAC+TGG | + | chr1_3:66645580-66645599 | Msa0135090:CDS | 40.0% | |
| AAAGTCATGCTTTCAGGAGA+AGG | + | chr1_3:66645705-66645724 | Msa0135090:intron | 40.0% | |
| TTCATTCCCATACTTTGTGC+TGG | + | chr1_3:66645864-66645883 | Msa0135090:three_prime_UTR | 40.0% | |
| GCAGAAGCAGATGAGTTCAA+AGG | + | chr1_3:66641809-66641828 | Msa0135090:exon | 45.0% | |
| GTCTCTATTCCGCTTCCAAA+TGG | + | chr1_3:66641883-66641902 | Msa0135090:CDS | 45.0% | |
| ! | TTCGAAGGCGTGAATTTCGA+TGG | - | chr1_3:66642050-66642069 | None:intergenic | 45.0% |
| AATTCACGCCTTCGAATACG+AGG | + | chr1_3:66642054-66642073 | Msa0135090:CDS | 45.0% | |
| GAGCAGCTCTCTTATACTCA+CGG | - | chr1_3:66642241-66642260 | None:intergenic | 45.0% | |
| GGGTGTGTATGTTGTGTTGA+TGG | + | chr1_3:66642629-66642648 | Msa0135090:intron | 45.0% | |
| !! | TGGGAAAGTCTGTTTTGGGT+TGG | + | chr1_3:66642756-66642775 | Msa0135090:intron | 45.0% |
| !!! | GGGAAAGTCTGTTTTGGGTT+GGG | + | chr1_3:66642757-66642776 | Msa0135090:intron | 45.0% |
| !!! | GGAAAGTCTGTTTTGGGTTG+GGG | + | chr1_3:66642758-66642777 | Msa0135090:intron | 45.0% |
| !!! | GAAAGTCTGTTTTGGGTTGG+GGG | + | chr1_3:66642759-66642778 | Msa0135090:intron | 45.0% |
| !! | TGTTGAGTTCCATTTTGGGG+GGG | + | chr1_3:66642830-66642849 | Msa0135090:intron | 45.0% |
| ! | TTAAAACTCTGGCTGGCTGT+TGG | + | chr1_3:66643522-66643541 | Msa0135090:intron | 45.0% |
| !! | CTGGCTGTTGGCCTTAAAAT+TGG | + | chr1_3:66643534-66643553 | Msa0135090:intron | 45.0% |
| GCATAAGAGGCAGAAGACTA+GGG | - | chr1_3:66644102-66644121 | None:intergenic | 45.0% | |
| AGCATAAGAGGCAGAAGACT+AGG | - | chr1_3:66644103-66644122 | None:intergenic | 45.0% | |
| GATGATAGAACTTGAGGGTC+TGG | + | chr1_3:66644385-66644404 | Msa0135090:CDS | 45.0% | |
| TGATGCGGTGAATCAGGAAT+TGG | + | chr1_3:66644415-66644434 | Msa0135090:CDS | 45.0% | |
| TTGTCTACACTCCGCAAGAA+TGG | + | chr1_3:66644455-66644474 | Msa0135090:CDS | 45.0% | |
| ! | GGGCTTTAGCAATTTGAGCT+TGG | - | chr1_3:66644778-66644797 | None:intergenic | 45.0% |
| GAGGATTGATCCTTACAGAG+TGG | + | chr1_3:66644850-66644869 | Msa0135090:CDS | 45.0% | |
| TCCTTACAGAGTGGAAGACA+TGG | + | chr1_3:66644859-66644878 | Msa0135090:CDS | 45.0% | |
| TCCATGTCTTCCACTCTGTA+AGG | - | chr1_3:66644863-66644882 | None:intergenic | 45.0% | |
| TCTCTCTGCTTGGACACTTA+TGG | + | chr1_3:66645072-66645091 | Msa0135090:CDS | 45.0% | |
| CTCTCTGCTTGGACACTTAT+GGG | + | chr1_3:66645073-66645092 | Msa0135090:CDS | 45.0% | |
| TATTTCAACAGCCCGACGAT+AGG | - | chr1_3:66645143-66645162 | None:intergenic | 45.0% | |
| ! | TGGACTAGGACAAGCTTATG+AGG | + | chr1_3:66645189-66645208 | Msa0135090:CDS | 45.0% |
| TCCACAGTCGGGAATCATTT+GGG | - | chr1_3:66645270-66645289 | None:intergenic | 45.0% | |
| ATCCACAGTCGGGAATCATT+TGG | - | chr1_3:66645271-66645290 | None:intergenic | 45.0% | |
| ! | AGGGCATCAAACTGTGATGA+TGG | + | chr1_3:66645358-66645377 | Msa0135090:CDS | 45.0% |
| GGGCATCAAACTGTGATGAT+GGG | + | chr1_3:66645359-66645378 | Msa0135090:CDS | 45.0% | |
| ! | GGCATCAAACTGTGATGATG+GGG | + | chr1_3:66645360-66645379 | Msa0135090:CDS | 45.0% |
| ACTCTGAATGCAGCTTTGCA+AGG | - | chr1_3:66645405-66645424 | None:intergenic | 45.0% | |
| TGCAAAGCTGCATTCAGAGT+TGG | + | chr1_3:66645405-66645424 | Msa0135090:CDS | 45.0% | |
| GCAAAGCTGCATTCAGAGTT+GGG | + | chr1_3:66645406-66645425 | Msa0135090:CDS | 45.0% | |
| AGAGGATGGAATCTGAAGAG+AGG | + | chr1_3:66645470-66645489 | Msa0135090:CDS | 45.0% | |
| GAGGATGGAATCTGAAGAGA+GGG | + | chr1_3:66645471-66645490 | Msa0135090:CDS | 45.0% | |
| ATGGAATCTGAAGAGAGGGA+AGG | + | chr1_3:66645475-66645494 | Msa0135090:CDS | 45.0% | |
| GGAAGGACCTAACATGATTG+AGG | + | chr1_3:66645492-66645511 | Msa0135090:CDS | 45.0% | |
| GAGAAGAACTGAAGAAGCAG+AGG | + | chr1_3:66645549-66645568 | Msa0135090:CDS | 45.0% | |
| ! | ACAATCTAGTTTCCCTCCAG+CGG | + | chr1_3:66645765-66645784 | Msa0135090:CDS | 45.0% |
| TCTGCTCCAGCACAAAGTAT+GGG | - | chr1_3:66645873-66645892 | None:intergenic | 45.0% | |
| TTCTGCTCCAGCACAAAGTA+TGG | - | chr1_3:66645874-66645893 | None:intergenic | 45.0% | |
| TTGTGCTGGAGCAGAACTAA+TGG | + | chr1_3:66645878-66645897 | Msa0135090:three_prime_UTR | 45.0% | |
| GTCTACTAGTTAGTGCAGCA+TGG | - | chr1_3:66645959-66645978 | None:intergenic | 45.0% | |
| TTGATGAAAATGCAGGGCGG+CGG | + | chr1_3:66641995-66642014 | Msa0135090:intron | 50.0% | |
| CGCTGAAACCTCGTATTCGA+AGG | - | chr1_3:66642065-66642084 | None:intergenic | 50.0% | |
| TCGAATACGAGGTTTCAGCG+TGG | + | chr1_3:66642065-66642084 | Msa0135090:CDS | 50.0% | |
| ! | ACAATGACAACGCCGATTGC+AGG | + | chr1_3:66642128-66642147 | Msa0135090:CDS | 50.0% |
| TGCTACTCCGGTTATGGAAG+AGG | + | chr1_3:66642163-66642182 | Msa0135090:CDS | 50.0% | |
| !! | AGCTCAACTCTGGGATGCTA+TGG | + | chr1_3:66642998-66643017 | Msa0135090:intron | 50.0% |
| ACGACGAACTTCCGTGTTAG+CGG | + | chr1_3:66643050-66643069 | Msa0135090:intron | 50.0% | |
| GAGATGACATGTCAGTCACC+TGG | - | chr1_3:66643277-66643296 | None:intergenic | 50.0% | |
| !! | TTCGCTTTTCTCCTGCCTGT+AGG | - | chr1_3:66644355-66644374 | None:intergenic | 50.0% |
| GGCAGGAGAAAAGCGAAAAG+AGG | + | chr1_3:66644358-66644377 | Msa0135090:intron | 50.0% | |
| GGGTCTGGGTAAAAGTGATG+CGG | + | chr1_3:66644400-66644419 | Msa0135090:CDS | 50.0% | |
| TTTGGCGCGTACAGTTCTTG+TGG | + | chr1_3:66644541-66644560 | Msa0135090:CDS | 50.0% | |
| TCCAGGCATTCCAGTTCCAA+GGG | - | chr1_3:66644583-66644602 | None:intergenic | 50.0% | |
| TAAGGATTGCAGCTCAGTCC+AGG | - | chr1_3:66644600-66644619 | None:intergenic | 50.0% | |
| ACGATAGGCATTCACAGCAG+CGG | - | chr1_3:66645128-66645147 | None:intergenic | 50.0% | |
| CTGCTGTGAATGCCTATCGT+CGG | + | chr1_3:66645128-66645147 | Msa0135090:CDS | 50.0% | |
| TGCTGTGAATGCCTATCGTC+GGG | + | chr1_3:66645129-66645148 | Msa0135090:CDS | 50.0% | |
| ACCCAAATGATTCCCGACTG+TGG | + | chr1_3:66645266-66645285 | Msa0135090:CDS | 50.0% | |
| TTCCCGACTGTGGATAGCAA+TGG | + | chr1_3:66645276-66645295 | Msa0135090:CDS | 50.0% | |
| AGCCATTGCTATCCACAGTC+GGG | - | chr1_3:66645281-66645300 | None:intergenic | 50.0% | |
| GAGCCATTGCTATCCACAGT+CGG | - | chr1_3:66645282-66645301 | None:intergenic | 50.0% | |
| GCTGGAGGGAAACTAGATTG+TGG | - | chr1_3:66645766-66645785 | None:intergenic | 50.0% | |
| CATCTCAGTCCCCCCCAAAA+TGG | - | chr1_3:66642842-66642861 | None:intergenic | 55.0% | |
| GAAGTTCGTCGTGTCACGGT+GGG | - | chr1_3:66643042-66643061 | None:intergenic | 55.0% | |
| CACGGAAGTTCGTCGTGTCA+CGG | - | chr1_3:66643046-66643065 | None:intergenic | 55.0% | |
| ! | TCCGTGTTAGCGGTGCTAAC+TGG | + | chr1_3:66643060-66643079 | Msa0135090:intron | 55.0% |
| GCCAGTTAGCACCGCTAACA+CGG | - | chr1_3:66643064-66643083 | None:intergenic | 55.0% | |
| ! | CCTGTAGGAAGTGCAGAGCA+TGG | - | chr1_3:66644340-66644359 | None:intergenic | 55.0% |
| CCATGCTCTGCACTTCCTAC+AGG | + | chr1_3:66644337-66644356 | Msa0135090:intron | 55.0% | |
| ACCCTTGGAACTGGAATGCC+TGG | + | chr1_3:66644579-66644598 | Msa0135090:CDS | 55.0% | |
| GTCCAGGCATTCCAGTTCCA+AGG | - | chr1_3:66644584-66644603 | None:intergenic | 55.0% | |
| CGATAGGCATTCACAGCAGC+GGG | - | chr1_3:66645127-66645146 | None:intergenic | 55.0% | |
| AGAGTTGGGACGCACTGAAG+AGG | + | chr1_3:66645420-66645439 | Msa0135090:CDS | 55.0% | |
| AGTGCTCAACATCCGCTGGA+GGG | - | chr1_3:66645780-66645799 | None:intergenic | 55.0% | |
| AAGTGCTCAACATCCGCTGG+AGG | - | chr1_3:66645781-66645800 | None:intergenic | 55.0% | |
| !! | GGAAAGTGCTCAACATCCGC+TGG | - | chr1_3:66645784-66645803 | None:intergenic | 55.0% |
| CTGGGATGCTATGGCGTGTG+TGG | + | chr1_3:66643007-66643026 | Msa0135090:intron | 60.0% | |
| GGATGCTATGGCGTGTGTGG+AGG | + | chr1_3:66643010-66643029 | Msa0135090:intron | 60.0% | |
| GGAAGTTCGTCGTGTCACGG+TGG | - | chr1_3:66643043-66643062 | None:intergenic | 60.0% | |
| GCTCTGCACTTCCTACAGGC+AGG | + | chr1_3:66644341-66644360 | Msa0135090:intron | 60.0% | |
| CCTCATCGAGCTTGCGAAGC+TGG | - | chr1_3:66645321-66645340 | None:intergenic | 60.0% | |
| CCAGCTTCGCAAGCTCGATG+AGG | + | chr1_3:66645318-66645337 | Msa0135090:CDS | 60.0% | |
| AGGGCGGCGGAGCAATTGCT+AGG | + | chr1_3:66642008-66642027 | Msa0135090:intron | 65.0% | |
| GGGGGGACTGAGATGACTGC+AGG | + | chr1_3:66642847-66642866 | Msa0135090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66641809 | 66646131 | 66641809 | ID=Msa0135090;Name=Msa0135090 |
| chr1_3 | mRNA | 66641809 | 66646131 | 66641809 | ID=Msa0135090-mRNA-1;Parent=Msa0135090;Name=Msa0135090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=10|1|1|1|1|1|4|321|578 |
| chr1_3 | exon | 66641809 | 66641904 | 66641809 | ID=Msa0135090-mRNA-1:exon:22763;Parent=Msa0135090-mRNA-1 |
| chr1_3 | exon | 66642010 | 66642322 | 66642010 | ID=Msa0135090-mRNA-1:exon:22764;Parent=Msa0135090-mRNA-1 |
| chr1_3 | exon | 66644359 | 66645606 | 66644359 | ID=Msa0135090-mRNA-1:exon:22765;Parent=Msa0135090-mRNA-1 |
| chr1_3 | exon | 66645721 | 66646131 | 66645721 | ID=Msa0135090-mRNA-1:exon:22766;Parent=Msa0135090-mRNA-1 |
| chr1_3 | five_prime_UTR | 66641809 | 66641818 | 66641809 | ID=Msa0135090-mRNA-1:five_prime_utr;Parent=Msa0135090-mRNA-1 |
| chr1_3 | CDS | 66641819 | 66641904 | 66641819 | ID=Msa0135090-mRNA-1:cds;Parent=Msa0135090-mRNA-1 |
| chr1_3 | CDS | 66642010 | 66642322 | 66642010 | ID=Msa0135090-mRNA-1:cds;Parent=Msa0135090-mRNA-1 |
| chr1_3 | CDS | 66644359 | 66645606 | 66644359 | ID=Msa0135090-mRNA-1:cds;Parent=Msa0135090-mRNA-1 |
| chr1_3 | CDS | 66645721 | 66645810 | 66645721 | ID=Msa0135090-mRNA-1:cds;Parent=Msa0135090-mRNA-1 |
| chr1_3 | three_prime_UTR | 66645811 | 66646131 | 66645811 | ID=Msa0135090-mRNA-1:three_prime_utr;Parent=Msa0135090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
